AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471090 MtrunA17_Chr3g0125821 98.286 175 3 0 1 175 1 175 6.19e-127 353
Msa0471090 MtrunA17_Chr2g0317731 69.167 120 36 1 55 173 54 173 7.53e-62 189
Msa0471090 MtrunA17_Chr8g0360031 63.077 130 48 0 44 173 47 176 4.22e-61 187
Msa0471090 MtrunA17_Chr4g0044731 47.573 103 54 0 73 175 68 170 2.17e-34 119
Msa0471090 MtrunA17_Chr2g0317721 47.222 108 57 0 64 171 35 142 3.18e-32 112
Msa0471090 MtrunA17_Chr2g0317701 39.568 139 81 2 35 170 9 147 1.88e-30 108
Msa0471090 MtrunA17_Chr2g0317711 42.593 108 61 1 64 171 35 141 1.06e-25 95.9
Msa0471090 MtrunA17_Chr1g0211871 39.640 111 55 3 70 175 70 173 1.41e-24 94.4
Msa0471090 MtrunA17_Chr1g0201781 38.144 97 60 0 74 170 66 162 3.95e-22 87.4
Msa0471090 MtrunA17_Chr2g0317691 53.125 64 30 0 110 173 3 66 2.03e-20 80.9
Msa0471090 MtrunA17_Chr5g0404831 39.252 107 60 3 70 173 11 115 4.23e-20 80.9
Msa0471090 MtrunA17_Chr1g0155721 35.780 109 65 3 70 175 9 115 1.04e-17 74.7
Msa0471090 MtrunA17_Chr7g0216481 36.905 84 51 2 89 172 51 132 2.93e-17 73.9
Msa0471090 MtrunA17_Chr3g0142051 34.513 113 69 3 63 172 2 112 4.25e-17 73.2
Msa0471090 MtrunA17_Chr4g0052481 36.275 102 52 4 61 159 64 155 1.11e-15 70.9
Msa0471090 MtrunA17_Chr7g0258871 27.564 156 95 4 15 159 21 169 5.19e-14 66.6
Msa0471090 MtrunA17_Chr8g0393201 38.750 80 47 2 93 172 256 333 6.96e-14 68.2
Msa0471090 MtrunA17_Chr1g0164481 32.558 86 56 1 88 171 94 179 1.12e-12 63.2
Msa0471090 MtrunA17_Chr1g0194961 34.831 89 56 1 66 152 145 233 2.45e-12 63.9
Msa0471090 MtrunA17_Chr5g0438731 40.000 70 42 0 82 151 74 143 7.36e-12 62.8
Msa0471090 MtrunA17_Chr7g0245141 33.803 71 46 1 89 159 49 118 4.28e-11 57.8
Msa0471090 MtrunA17_Chr7g0249461 30.147 136 82 5 29 159 44 171 6.22e-11 58.5
Msa0471090 MtrunA17_Chr8g0334481 31.461 89 57 2 74 159 33 120 9.94e-11 57.0
Msa0471090 MtrunA17_Chr1g0173181 34.409 93 59 1 83 173 422 514 9.98e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471090 AT3G15360.1 58.197 122 48 1 55 173 70 191 8.36e-51 162
Msa0471090 AT1G03680.1 47.020 151 80 0 23 173 29 179 4.42e-50 159
Msa0471090 AT4G03520.1 51.639 122 59 0 52 173 64 185 2.90e-49 157
Msa0471090 AT2G15570.1 52.427 103 49 0 73 175 71 173 1.05e-37 128
Msa0471090 AT2G15570.2 52.427 103 49 0 73 175 72 174 1.08e-37 128
Msa0471090 AT4G03520.2 54.930 71 32 0 103 173 1 71 9.94e-27 97.1
Msa0471090 AT1G76760.1 35.606 132 79 2 39 170 40 165 3.71e-23 90.5
Msa0471090 AT1G43560.1 39.175 97 59 0 74 170 64 160 7.33e-23 89.7
Msa0471090 AT1G50320.1 31.852 135 78 4 46 175 49 174 2.64e-19 80.9
Msa0471090 AT3G51030.1 36.842 114 67 3 63 173 2 113 1.05e-18 77.4
Msa0471090 AT1G19730.1 34.513 113 70 2 63 172 2 113 1.39e-18 77.4
Msa0471090 AT5G42980.1 37.500 88 53 2 85 172 26 111 6.55e-17 73.2
Msa0471090 AT2G35010.2 34.568 162 88 7 8 159 27 180 1.18e-16 74.3
Msa0471090 AT2G35010.1 34.568 162 88 7 8 159 27 180 1.18e-16 74.3
Msa0471090 AT4G12170.1 36.538 104 65 1 70 173 51 153 2.72e-16 72.4
Msa0471090 AT1G52990.1 42.391 92 51 2 83 173 223 313 8.71e-16 73.6
Msa0471090 AT5G39950.1 39.759 83 48 2 89 171 50 130 1.68e-15 69.7
Msa0471090 AT1G45145.1 35.294 85 51 2 78 159 16 99 7.07e-14 65.1
Msa0471090 AT1G31020.1 41.096 73 40 2 88 158 73 144 1.07e-13 65.5
Msa0471090 AT3G54960.2 30.097 103 71 1 69 171 100 201 1.16e-11 62.8
Msa0471090 AT3G54960.1 30.097 103 71 1 69 171 100 201 1.22e-11 62.4
Msa0471090 AT1G21750.2 37.975 79 47 1 70 146 376 454 2.70e-11 61.6
Msa0471090 AT1G21750.1 37.975 79 47 1 70 146 376 454 3.30e-11 61.2
Msa0471090 AT1G59730.1 30.108 93 63 2 80 172 37 127 3.68e-11 58.2
Msa0471090 AT2G32920.1 36.111 72 46 0 76 147 170 241 3.98e-11 60.8
Msa0471090 AT3G06730.1 29.885 87 59 1 86 170 94 180 4.18e-11 59.3
Msa0471090 AT5G16400.1 36.538 104 53 5 65 159 71 170 9.97e-11 58.2

Find 58 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTGGTTCTTGGAATTT+TGG 0.097044 3_3:-73309042 Msa0471090:five_prime_UTR
CACAACCGATTGTTATAATT+AGG 0.185482 3_3:+73310546 Msa0471080:three_prime_UTR
AAGGATTATCTTTCAATATA+TGG 0.206443 3_3:-73307194 Msa0471090:three_prime_UTR
TAAAACTCATTTCTGGTTCT+TGG 0.214172 3_3:-73309050 Msa0471090:five_prime_UTR
AAATGTGTAAAACTCATTTC+TGG 0.220442 3_3:-73309057 Msa0471090:five_prime_UTR
GATAAACAGACCTCCTTCTT+TGG 0.252476 3_3:-73307105 Msa0471090:three_prime_UTR
CCTTAAAATCGATGATTGTT+TGG 0.302028 3_3:-73307072 Msa0471090:three_prime_UTR
TTGGCTAGCTCATCAATAAT+AGG 0.304078 3_3:+73307568 Msa0471080:three_prime_UTR
ACAACCGATTGTTATAATTA+GGG 0.308264 3_3:+73310547 Msa0471080:three_prime_UTR
CCGTACTTTGTTGCTATGTT+TGG 0.325721 3_3:+73307496 Msa0471080:three_prime_UTR
CTCCATTGTTTCCAACTTCA+AGG 0.326814 3_3:-73308705 Msa0471090:CDS
TTCTTCTACTCAATAGTTTG+TGG 0.358508 3_3:+73308801 Msa0471080:three_prime_UTR
CAACAACCAGTTACTATTGT+AGG 0.369089 3_3:-73307028 None:intergenic
ATCTTTATCATATCTATGTA+AGG 0.391983 3_3:-73307213 Msa0471090:three_prime_UTR
TAGATTGTGAGGTTCTTAGA+AGG 0.418643 3_3:+73308941 Msa0471080:three_prime_UTR
GTTTCCAACTTCAAGGGAAA+AGG 0.418825 3_3:-73308698 Msa0471090:CDS
TACAATAGTAACTGGTTGTT+GGG 0.430595 3_3:+73307030 Msa0471080:three_prime_UTR
ACAAAGTAGCAACATGGCTT+TGG 0.442578 3_3:-73308770 Msa0471090:exon
TGATCCCTAATTATAACAAT+CGG 0.467915 3_3:-73310551 Msa0471090:five_prime_UTR
CTACAATAGTAACTGGTTGT+TGG 0.470232 3_3:+73307029 Msa0471080:three_prime_UTR
AGTTTGTGGAAAGTGCACTA+TGG 0.478079 3_3:+73308815 Msa0471080:three_prime_UTR
TGGAGGAAGACACTGAGGTC+TGG 0.484266 3_3:+73308723 Msa0471080:three_prime_UTR
CACCATGGTGTGGTCCATGC+AGG 0.487978 3_3:-73307600 Msa0471090:CDS
TCCATGCCCTGCAAGGCAAA+AGG 0.493517 3_3:-73307244 Msa0471090:three_prime_UTR
TTGCAGGGCATGGAAAAGAA+TGG 0.497539 3_3:+73307253 Msa0471080:three_prime_UTR
AATAAAACTCATTAATCACT+TGG 0.500134 3_3:+73310605 Msa0471080:three_prime_UTR
AACAACCAGTTACTATTGTA+GGG 0.513311 3_3:-73307027 None:intergenic
TTTCTGTAGGCAACACCAGA+TGG 0.513750 3_3:+73308613 Msa0471080:three_prime_UTR
TGCAGGGCATGGAAAAGAAT+GGG 0.514634 3_3:+73307254 Msa0471080:three_prime_UTR
TGCAAGTGAAACCCCTGTGC+TGG 0.515943 3_3:-73307635 Msa0471090:CDS
GAGCAGTGACTGACTCAAGC+TGG 0.516226 3_3:-73307672 Msa0471090:CDS
TCCCTTGAAGTTGGAAACAA+TGG 0.517273 3_3:+73308703 Msa0471080:three_prime_UTR
GTGTTCTCAGCTCAAAGAGC+AGG 0.522900 3_3:-73308673 Msa0471090:CDS
TCCATTGTTTCCAACTTCAA+GGG 0.526913 3_3:-73308704 Msa0471090:CDS
GAGCTAGCCAAAGAATATGC+TGG 0.527432 3_3:-73307556 Msa0471090:CDS
TTGAAATAAAGTAATATACA+AGG 0.529581 3_3:+73307152 Msa0471080:three_prime_UTR
TGGATAAGCTTCTAGTGTTG+TGG 0.530759 3_3:+73308852 Msa0471080:three_prime_UTR
TCAACACTATCATTCCCATC+TGG 0.532444 3_3:-73308628 Msa0471090:CDS
GTTGTAGACAGAGTAGACTT+TGG 0.532653 3_3:+73307403 Msa0471080:three_prime_UTR
CCAAACATAGCAACAAAGTA+CGG 0.542679 3_3:-73307496 Msa0471090:CDS
AGGTAATCAACATCCAAAGA+AGG 0.551600 3_3:+73307092 Msa0471080:three_prime_UTR
GCTCGTGAAGCTGTAAATGA+AGG 0.553122 3_3:-73308571 Msa0471090:intron
GTCTACTCTGTCTACAACTG+TGG 0.556776 3_3:-73307398 Msa0471090:CDS
GGGTTTCACTTGCAAGAACA+AGG 0.564621 3_3:+73307644 Msa0471080:three_prime_UTR
GGATATTATTATAGATTGTG+AGG 0.572535 3_3:+73308930 Msa0471080:three_prime_UTR
AAGACACTGAGGTCTGGCTG+TGG 0.576209 3_3:+73308729 Msa0471080:three_prime_UTR
TTCTGTAGGCAACACCAGAT+GGG 0.579739 3_3:+73308614 Msa0471080:three_prime_UTR
ATAAGCTTCTAGTGTTGTGG+TGG 0.584014 3_3:+73308855 Msa0471080:three_prime_UTR
TGTGTGTATGTGTTTGCAAG+TGG 0.593815 3_3:+73308909 Msa0471080:three_prime_UTR
CTTGAAGTTGGAAACAATGG+AGG 0.602873 3_3:+73308706 Msa0471080:three_prime_UTR
ATAGGCGCTATCATCCTGCA+TGG 0.617910 3_3:+73307586 Msa0471080:three_prime_UTR
TTAGAAGGCTCGAATTCATG+TGG 0.637219 3_3:+73308956 Msa0471080:three_prime_UTR
TAATCAACATCCAAAGAAGG+AGG 0.649027 3_3:+73307095 Msa0471080:three_prime_UTR
GAAGGCTCGAATTCATGTGG+TGG 0.662721 3_3:+73308959 Msa0471080:three_prime_UTR
TTACACACAAAGTAGCAACA+TGG 0.681780 3_3:-73308776 Msa0471090:exon
ATCCTGCATGGACCACACCA+TGG 0.683330 3_3:+73307598 Msa0471080:three_prime_UTR
AACAATGGAGGAAGACACTG+AGG 0.723169 3_3:+73308718 Msa0471080:three_prime_UTR
TTAGTGGGACAAAAGCAGAG+AGG 0.733816 3_3:-73309002 Msa0471090:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAAATTTTTTAGTTTTTT+AGG - chr3_3:73308284-73308303 Msa0471090:intron 10.0%
!!! CAAAATTTTTTAGTTTTTTA+GGG - chr3_3:73308285-73308304 Msa0471090:intron 10.0%
!!! AAAATTTTTTAGTTTTTTAG+GGG - chr3_3:73308286-73308305 Msa0471090:intron 10.0%
!!! TGTTTTTATCTTTTTATTTC+TGG + chr3_3:73307340-73307359 Msa0471080:three_prime_UTR 15.0%
!!! CTAAAAAATTTTGAAGAAAA+TGG + chr3_3:73308278-73308297 Msa0471080:intron 15.0%
!!! GAGATTATTTAAGATATTTT+CGG - chr3_3:73309357-73309376 Msa0471090:intron 15.0%
!! TTGAAATAAAGTAATATACA+AGG + chr3_3:73310507-73310526 Msa0471080:intron 15.0%
!! AATAAAACTCATTAATCACT+TGG + chr3_3:73307054-73307073 Msa0471080:three_prime_UTR 20.0%
!! ATAAATCTGACAATTTATTC+CGG + chr3_3:73307226-73307245 Msa0471080:three_prime_UTR 20.0%
!! AATAAATTGTCAGATTTATC+CGG - chr3_3:73307227-73307246 Msa0471090:three_prime_UTR 20.0%
!!! ATATTTTTGGATATTTTGCA+GGG - chr3_3:73308506-73308525 Msa0471090:intron 20.0%
!! AAAGACTCATAACAAAATAT+AGG + chr3_3:73309190-73309209 Msa0471080:intron 20.0%
!! TCAATTATAATGTGAAGATA+AGG + chr3_3:73309539-73309558 Msa0471080:intron 20.0%
!! AAAATTCAGAATACATTACA+AGG + chr3_3:73309690-73309709 Msa0471080:intron 20.0%
!!! TGAATTTTATTTTCTCATTG+AGG - chr3_3:73309702-73309721 Msa0471090:intron 20.0%
!! ATCTTTATCATATCTATGTA+AGG - chr3_3:73310443-73310462 Msa0471090:intron 20.0%
!! AAGGATTATCTTTCAATATA+TGG - chr3_3:73310462-73310481 Msa0471090:intron 20.0%
!!! CATTTTGTAAAGTTTTACAT+TGG - chr3_3:73310529-73310548 Msa0471090:intron 20.0%
! TGATCCCTAATTATAACAAT+CGG - chr3_3:73307105-73307124 Msa0471090:three_prime_UTR 25.0%
! ACAACCGATTGTTATAATTA+GGG + chr3_3:73307112-73307131 Msa0471080:three_prime_UTR 25.0%
! AGGAGATTAGAAATAGATTT+AGG + chr3_3:73307432-73307451 Msa0471080:three_prime_UTR 25.0%
! TAAATGTAGTCAAAAAAACG+TGG - chr3_3:73307878-73307897 Msa0471090:intron 25.0%
! AAATATATTCCGGAAAACAA+AGG + chr3_3:73308002-73308021 Msa0471080:intron 25.0%
! TTAATCCGGAAAATATATTC+CGG + chr3_3:73308012-73308031 Msa0471080:intron 25.0%
!!! ACTTGTTTTAGGCTATAAAT+AGG - chr3_3:73308204-73308223 Msa0471090:intron 25.0%
! AAAATATCCAAAAATATCCC+TGG + chr3_3:73308503-73308522 Msa0471080:intron 25.0%
!!! GATATTTTTGGATATTTTGC+AGG - chr3_3:73308505-73308524 Msa0471090:intron 25.0%
!! TTTTCTTCTTCTTAATTGAG+AGG + chr3_3:73308580-73308599 Msa0471080:three_prime_UTR 25.0%
! AAATGTGTAAAACTCATTTC+TGG - chr3_3:73308599-73308618 Msa0471090:CDS 25.0%
! GGATATTATTATAGATTGTG+AGG + chr3_3:73308729-73308748 Msa0471080:three_prime_UTR 25.0%
!! AATAAAACGAGATTTTCTGT+AGG + chr3_3:73309059-73309078 Msa0471080:three_prime_UTR 25.0%
!!! CATTAAGTTTTAACCTGTTT+AGG + chr3_3:73309598-73309617 Msa0471080:intron 25.0%
!! CAAATTAACTTTTGCATGTT+TGG + chr3_3:73309893-73309912 Msa0471080:intron 25.0%
!! AATTTTTCCAGCATATTCTT+TGG + chr3_3:73310110-73310129 Msa0471080:intron 25.0%
! TTCTTGAAAAATAGAACAGT+TGG + chr3_3:73310199-73310218 Msa0471080:intron 25.0%
!!! ACTGTTCTATTTTTCAAGAA+TGG - chr3_3:73310199-73310218 Msa0471090:intron 25.0%
!! GAGAAAAAAGAAAGTGTAAT+TGG - chr3_3:73310223-73310242 Msa0471090:intron 25.0%
! ATGCATTATAACACCAAAAA+TGG - chr3_3:73310327-73310346 Msa0471090:intron 25.0%
CACAACCGATTGTTATAATT+AGG + chr3_3:73307113-73307132 Msa0471080:three_prime_UTR 30.0%
GGGGTAAAAATGGAAAAAAT+AGG + chr3_3:73307185-73307204 Msa0471080:three_prime_UTR 30.0%
!!! ATTTTTTCCATTTTTACCCC+TGG - chr3_3:73307185-73307204 Msa0471090:three_prime_UTR 30.0%
CCATTCAGGAATTTATAATC+CGG + chr3_3:73307249-73307268 Msa0471080:three_prime_UTR 30.0%
! GAGATTAGAATTAGGCTTTT+AGG + chr3_3:73307452-73307471 Msa0471080:three_prime_UTR 30.0%
! GTTTTCCGGAATATATTTTC+CGG - chr3_3:73308004-73308023 Msa0471090:intron 30.0%
TTTCCGGATTAATACAATAC+TGG - chr3_3:73308020-73308039 Msa0471090:intron 30.0%
TCACCAGTATTGTATTAATC+CGG + chr3_3:73308026-73308045 Msa0471080:intron 30.0%
AAAAGTTGACACTTCTTGTA+GGG - chr3_3:73308053-73308072 Msa0471090:intron 30.0%
!! AATGACCTAAGACTTGTTTT+AGG - chr3_3:73308193-73308212 Msa0471090:intron 30.0%
TATAGCCTAAAACAAGTCTT+AGG + chr3_3:73308201-73308220 Msa0471080:intron 30.0%
!! ATGAAGGTATTTGTTGAAGA+TGG + chr3_3:73308233-73308252 Msa0471080:intron 30.0%
TGAAGAAAATGGAAGAAAAG+AGG + chr3_3:73308267-73308286 Msa0471080:intron 30.0%
!!! TTTTAGTTTTTTAGGGGTGT+CGG - chr3_3:73308292-73308311 Msa0471090:intron 30.0%
! ACACAAAAGCACATAACATA+TGG - chr3_3:73308420-73308439 Msa0471090:intron 30.0%
!! TAAAACTCATTTCTGGTTCT+TGG - chr3_3:73308606-73308625 Msa0471090:CDS 30.0%
!!! ATTTCTGGTTCTTGGAATTT+TGG - chr3_3:73308614-73308633 Msa0471090:CDS 30.0%
!!! GTGGTGGTTTTTAATTTGTT+TGG + chr3_3:73308788-73308807 Msa0471080:three_prime_UTR 30.0%
TTCTTCTACTCAATAGTTTG+TGG + chr3_3:73308858-73308877 Msa0471080:three_prime_UTR 30.0%
TTCAAGAAAAACAGTTCACA+AGG + chr3_3:73309125-73309144 Msa0471080:intron 30.0%
! GGTTATAAACACTCATTTTC+AGG + chr3_3:73309264-73309283 Msa0471080:intron 30.0%
! ACATTTTTCGTCTTACAAGT+TGG - chr3_3:73309289-73309308 Msa0471090:intron 30.0%
TGAAACCTTAAGATAGTTTG+TGG - chr3_3:73309502-73309521 Msa0471090:intron 30.0%
TTTAGTCATCACTTACAAGA+TGG + chr3_3:73309648-73309667 Msa0471080:intron 30.0%
! TAAATGCATGTATGGATTGA+CGG - chr3_3:73309760-73309779 Msa0471090:intron 30.0%
!! TGCAAAAGTTAATTTGCCTT+AGG - chr3_3:73309897-73309916 Msa0471090:intron 30.0%
CACTATAGTGAATAAACCTA+AGG + chr3_3:73309916-73309935 Msa0471080:intron 30.0%
!!! CCAAACAATCATCGATTTTA+AGG + chr3_3:73310587-73310606 Msa0471080:three_prime_UTR 30.0%
CCTTAAAATCGATGATTGTT+TGG - chr3_3:73310584-73310603 Msa0471090:five_prime_UTR 30.0%
TACAATAGTAACTGGTTGTT+GGG + chr3_3:73310629-73310648 Msa0471080:three_prime_UTR 30.0%
CCGGATTATAAATTCCTGAA+TGG - chr3_3:73307246-73307265 Msa0471090:three_prime_UTR 35.0%
GCTTGAAACTGAAAAAGTTC+TGG + chr3_3:73307279-73307298 Msa0471080:three_prime_UTR 35.0%
GCTCTTAGGAGATTAGAATT+AGG + chr3_3:73307460-73307479 Msa0471080:three_prime_UTR 35.0%
ACTTTCAGGGTTTGTATGAA+CGG + chr3_3:73307701-73307720 Msa0471080:intron 35.0%
GGTTTAGGAGGCTATTTATA+GGG - chr3_3:73307825-73307844 Msa0471090:intron 35.0%
!! TTTGCACCACATGTTTTTGT+TGG + chr3_3:73307930-73307949 Msa0471080:intron 35.0%
GAAAAGTTGACACTTCTTGT+AGG - chr3_3:73308052-73308071 Msa0471090:intron 35.0%
GCCATTAATGTAGGTTTGAA+CGG - chr3_3:73308136-73308155 Msa0471090:intron 35.0%
ACCGTTCAAACCTACATTAA+TGG + chr3_3:73308140-73308159 Msa0471080:intron 35.0%
AATTGCAGGGTTCATATGAA+TGG + chr3_3:73308339-73308358 Msa0471080:intron 35.0%
GTGTCTTTCTTTGATGTCAA+GGG + chr3_3:73308404-73308423 Msa0471080:intron 35.0%
TGTGTCTTTCTTTGATGTCA+AGG + chr3_3:73308405-73308424 Msa0471080:intron 35.0%
AAAGCACATAACATATGGTC+CGG - chr3_3:73308425-73308444 Msa0471090:intron 35.0%
ACCAGATTGTTAGTGATATC+CGG + chr3_3:73308461-73308480 Msa0471080:intron 35.0%
ATATCACTAACAATCTGGTC+CGG - chr3_3:73308462-73308481 Msa0471090:intron 35.0%
!!! TGATGTGTACCACTTTTTAG+TGG - chr3_3:73308638-73308657 Msa0471090:CDS 35.0%
!!! GATGTGTACCACTTTTTAGT+GGG - chr3_3:73308639-73308658 Msa0471090:CDS 35.0%
TAGATTGTGAGGTTCTTAGA+AGG + chr3_3:73308718-73308737 Msa0471080:three_prime_UTR 35.0%
TTACACACAAAGTAGCAACA+TGG - chr3_3:73308880-73308899 Msa0471090:five_prime_UTR 35.0%
TCCATTGTTTCCAACTTCAA+GGG - chr3_3:73308952-73308971 Msa0471090:five_prime_UTR 35.0%
TCTAGCCACAAACTATCTTA+AGG + chr3_3:73309510-73309529 Msa0471080:intron 35.0%
TGAACTTAATTTCCACAGCT+AGG - chr3_3:73309556-73309575 Msa0471090:intron 35.0%
GAACTTAATTTCCACAGCTA+GGG - chr3_3:73309557-73309576 Msa0471090:intron 35.0%
AACTTAATTTCCACAGCTAG+GGG - chr3_3:73309558-73309577 Msa0471090:intron 35.0%
GAATACATTACAAGGAAACC+AGG + chr3_3:73309682-73309701 Msa0471080:intron 35.0%
TTGAGCATAAGAGAGGATTT+AGG - chr3_3:73309726-73309745 Msa0471090:intron 35.0%
AGCACTTCTAAATGCATGTA+TGG - chr3_3:73309752-73309771 Msa0471090:intron 35.0%
! ACTGTGTGTCAATGTGATTT+TGG - chr3_3:73309802-73309821 Msa0471090:intron 35.0%
TTTGGATTGACTGTGAGTAT+GGG + chr3_3:73309875-73309894 Msa0471080:intron 35.0%
AACACATACATGCTCAAACT+TGG - chr3_3:73309955-73309974 Msa0471090:intron 35.0%
! TTGGCTAGCTCATCAATAAT+AGG + chr3_3:73310091-73310110 Msa0471080:intron 35.0%
CCAAACATAGCAACAAAGTA+CGG - chr3_3:73310160-73310179 Msa0471090:intron 35.0%
AACACCAAAAATGGATGAAC+TGG - chr3_3:73310336-73310355 Msa0471090:intron 35.0%
ACACCAAAAATGGATGAACT+GGG - chr3_3:73310337-73310356 Msa0471090:intron 35.0%
! AATCCCAGTTCATCCATTTT+TGG + chr3_3:73310343-73310362 Msa0471080:intron 35.0%
TAATCAACATCCAAAGAAGG+AGG + chr3_3:73310564-73310583 Msa0471080:three_prime_UTR 35.0%
AGGTAATCAACATCCAAAGA+AGG + chr3_3:73310567-73310586 Msa0471080:three_prime_UTR 35.0%
CTACAATAGTAACTGGTTGT+TGG + chr3_3:73310630-73310649 Msa0471080:three_prime_UTR 35.0%
!! GAATGACTTTTTCCACCCTA+TGG - chr3_3:73307145-73307164 Msa0471090:three_prime_UTR 40.0%
TATGTCCTATCACATACCAG+TGG + chr3_3:73307487-73307506 Msa0471080:three_prime_UTR 40.0%
!! GTTCTTAGCTTGACTTGTCT+GGG + chr3_3:73307613-73307632 Msa0471080:three_prime_UTR 40.0%
!! AGTTCTTAGCTTGACTTGTC+TGG + chr3_3:73307614-73307633 Msa0471080:three_prime_UTR 40.0%
GTTTGTATGAACGGTCAATG+AGG + chr3_3:73307692-73307711 Msa0471080:intron 40.0%
! AACCCTGAAAGTTTTCAACG+AGG - chr3_3:73307709-73307728 Msa0471090:intron 40.0%
!! CGTTGGCCTTTCATAGATAA+GGG + chr3_3:73307735-73307754 Msa0471080:intron 40.0%
!! TCGTTGGCCTTTCATAGATA+AGG + chr3_3:73307736-73307755 Msa0471080:intron 40.0%
TATCTATGAAAGGCCAACGA+TGG - chr3_3:73307736-73307755 Msa0471090:intron 40.0%
TGGAAAACCATGGTTGTAGA+AGG - chr3_3:73307756-73307775 Msa0471090:intron 40.0%
TCTTCTTCCTTCTACAACCA+TGG + chr3_3:73307766-73307785 Msa0471080:intron 40.0%
ATGGTTGTAGAAGGAAGAAG+AGG - chr3_3:73307765-73307784 Msa0471090:intron 40.0%
TGTGAGAAATGGTAGGGTTT+AGG - chr3_3:73307810-73307829 Msa0471090:intron 40.0%
GGGTTTAGGAGGCTATTTAT+AGG - chr3_3:73307824-73307843 Msa0471090:intron 40.0%
AGGCTATTTATAGGGAGAGT+GGG - chr3_3:73307833-73307852 Msa0471090:intron 40.0%
AGAGTGGGTCAAAAAATGGT+TGG - chr3_3:73307848-73307867 Msa0471090:intron 40.0%
GAGTGGGTCAAAAAATGGTT+GGG - chr3_3:73307849-73307868 Msa0471090:intron 40.0%
TGACCACCAACAAAAACATG+TGG - chr3_3:73307921-73307940 Msa0471090:intron 40.0%
ACATTCCGGATTGTAGTTTC+CGG + chr3_3:73307978-73307997 Msa0471080:intron 40.0%
! CGGAAAACAAAGGTACATTC+CGG + chr3_3:73307992-73308011 Msa0471080:intron 40.0%
!!! CGGAATGTACCTTTGTTTTC+CGG - chr3_3:73307990-73308009 Msa0471090:intron 40.0%
TGACACTTCTTGTAGGGTTA+AGG - chr3_3:73308059-73308078 Msa0471090:intron 40.0%
TTGTAGGGTTAAGGAAGTTC+TGG - chr3_3:73308068-73308087 Msa0471090:intron 40.0%
AATCCAGAAAGCTTCAGCAT+TGG - chr3_3:73308098-73308117 Msa0471090:intron 40.0%
AATCCAATGCTGAAGCTTTC+TGG + chr3_3:73308104-73308123 Msa0471080:intron 40.0%
!! CAGCATTGGATTCTTTTGTG+TGG - chr3_3:73308112-73308131 Msa0471090:intron 40.0%
TTGTGTGGAGCCATTAATGT+AGG - chr3_3:73308127-73308146 Msa0471090:intron 40.0%
AGAGGTGAAGTGAAGAATGA+AGG + chr3_3:73308249-73308268 Msa0471080:intron 40.0%
AATTGCATTGCAGCTTGTGT+GGG - chr3_3:73308355-73308374 Msa0471090:intron 40.0%
CTTGTGTGGGGTTCATATAA+CGG - chr3_3:73308368-73308387 Msa0471090:intron 40.0%
GATATCCGGAAAACGAAATC+CGG + chr3_3:73308447-73308466 Msa0471080:intron 40.0%
TCCGGATATCACTAACAATC+TGG - chr3_3:73308457-73308476 Msa0471090:intron 40.0%
CTGGTCCGGATTATATAATC+CGG - chr3_3:73308476-73308495 Msa0471090:intron 40.0%
CTGGTCCGGATTATATAATC+CGG + chr3_3:73308476-73308495 Msa0471080:intron 40.0%
GGATTATATAATCCGGACCA+GGG - chr3_3:73308483-73308502 Msa0471090:intron 40.0%
ATCCAAAAATATCCCTGGTC+CGG + chr3_3:73308498-73308517 Msa0471080:intron 40.0%
! GCTTTTGTCCCACTAAAAAG+TGG + chr3_3:73308650-73308669 Msa0471080:three_prime_UTR 40.0%
TTAGAAGGCTCGAATTCATG+TGG + chr3_3:73308703-73308722 Msa0471080:three_prime_UTR 40.0%
TGTGTGTATGTGTTTGCAAG+TGG + chr3_3:73308750-73308769 Msa0471080:three_prime_UTR 40.0%
ATAAGCTTCTAGTGTTGTGG+TGG + chr3_3:73308804-73308823 Msa0471080:three_prime_UTR 40.0%
TGGATAAGCTTCTAGTGTTG+TGG + chr3_3:73308807-73308826 Msa0471080:three_prime_UTR 40.0%
!! CTATGGTTTTTCAGCACTTG+TGG + chr3_3:73308827-73308846 Msa0471080:three_prime_UTR 40.0%
! AGTTTGTGGAAAGTGCACTA+TGG + chr3_3:73308844-73308863 Msa0471080:three_prime_UTR 40.0%
ACAAAGTAGCAACATGGCTT+TGG - chr3_3:73308886-73308905 Msa0471090:five_prime_UTR 40.0%
CTTGAAGTTGGAAACAATGG+AGG + chr3_3:73308953-73308972 Msa0471080:three_prime_UTR 40.0%
CTCCATTGTTTCCAACTTCA+AGG - chr3_3:73308951-73308970 Msa0471090:five_prime_UTR 40.0%
TCCCTTGAAGTTGGAAACAA+TGG + chr3_3:73308956-73308975 Msa0471080:three_prime_UTR 40.0%
GTTTCCAACTTCAAGGGAAA+AGG - chr3_3:73308958-73308977 Msa0471090:five_prime_UTR 40.0%
! ACAACCTTTTCCCTTGAAGT+TGG + chr3_3:73308965-73308984 Msa0471080:three_prime_UTR 40.0%
TCAACACTATCATTCCCATC+TGG - chr3_3:73309028-73309047 Msa0471090:five_prime_UTR 40.0%
GTAAGACGAAAAATGTCTGC+AGG + chr3_3:73309285-73309304 Msa0471080:intron 40.0%
AACCACATCTCATCCAATGT+GGG + chr3_3:73309430-73309449 Msa0471080:intron 40.0%
AAACCACATCTCATCCAATG+TGG + chr3_3:73309431-73309450 Msa0471080:intron 40.0%
CTTGGGAAGAATTCCTAAAC+AGG - chr3_3:73309582-73309601 Msa0471090:intron 40.0%
TTGAGGATTGAGCATAAGAG+AGG - chr3_3:73309719-73309738 Msa0471090:intron 40.0%
! ATGTATGGATTGACGGTAGT+AGG - chr3_3:73309767-73309786 Msa0471090:intron 40.0%
TTGGATTGACTGTGAGTATG+GGG + chr3_3:73309874-73309893 Msa0471080:intron 40.0%
GTTTGGATTGACTGTGAGTA+TGG + chr3_3:73309876-73309895 Msa0471080:intron 40.0%
CCGTACTTTGTTGCTATGTT+TGG + chr3_3:73310163-73310182 Msa0471080:intron 40.0%
GTTGTAGACAGAGTAGACTT+TGG + chr3_3:73310256-73310275 Msa0471080:intron 40.0%
! AAACTACCTTTTGCCTTGCA+GGG + chr3_3:73310421-73310440 Msa0471080:intron 40.0%
GATAAACAGACCTCCTTCTT+TGG - chr3_3:73310551-73310570 Msa0471090:five_prime_UTR 40.0%
!! TTCCATTTTTACCCCTGGTC+TGG - chr3_3:73307190-73307209 Msa0471090:three_prime_UTR 45.0%
TTCCAGACCAGGGGTAAAAA+TGG + chr3_3:73307195-73307214 Msa0471080:three_prime_UTR 45.0%
GAAAACGAATTCCAGACCAG+GGG + chr3_3:73307204-73307223 Msa0471080:three_prime_UTR 45.0%
GGAAAACGAATTCCAGACCA+GGG + chr3_3:73307205-73307224 Msa0471080:three_prime_UTR 45.0%
!! CTGGTCTGGAATTCGTTTTC+CGG - chr3_3:73307204-73307223 Msa0471090:three_prime_UTR 45.0%
! GTTCTGGACAAAGACCATTC+AGG + chr3_3:73307263-73307282 Msa0471080:three_prime_UTR 45.0%
ATACCAGTGGTTAGGCTCTT+AGG + chr3_3:73307474-73307493 Msa0471080:three_prime_UTR 45.0%
CCTATCACATACCAGTGGTT+AGG + chr3_3:73307482-73307501 Msa0471080:three_prime_UTR 45.0%
CCTAACCACTGGTATGTGAT+AGG - chr3_3:73307479-73307498 Msa0471090:CDS 45.0%
CATATCAGTAGCTTCCCTGT+TGG - chr3_3:73307503-73307522 Msa0471090:CDS 45.0%
! AAGAAGTGTGGTTCATCTGG+AGG + chr3_3:73307653-73307672 Msa0471080:three_prime_UTR 45.0%
! GCAAAGAAGTGTGGTTCATC+TGG + chr3_3:73307656-73307675 Msa0471080:three_prime_UTR 45.0%
AACTGCACTGCAAAGAAGTG+TGG + chr3_3:73307665-73307684 Msa0471080:three_prime_UTR 45.0%
GTATGAACGGTCAATGAGGA+TGG + chr3_3:73307688-73307707 Msa0471080:intron 45.0%
GGCCTCGTTGAAAACTTTCA+GGG + chr3_3:73307714-73307733 Msa0471080:intron 45.0%
ACGAGGCCCTTATCTATGAA+AGG - chr3_3:73307726-73307745 Msa0471090:intron 45.0%
! CAACCATGGTTTTCCATCGT+TGG + chr3_3:73307752-73307771 Msa0471080:intron 45.0%
GTTGTAGAAGGAAGAAGAGG+AGG - chr3_3:73307768-73307787 Msa0471090:intron 45.0%
AGGATGGTGTGAGAAATGGT+AGG - chr3_3:73307803-73307822 Msa0471090:intron 45.0%
GGATGGTGTGAGAAATGGTA+GGG - chr3_3:73307804-73307823 Msa0471090:intron 45.0%
GAGAAATGGTAGGGTTTAGG+AGG - chr3_3:73307813-73307832 Msa0471090:intron 45.0%
GAGGCTATTTATAGGGAGAG+TGG - chr3_3:73307832-73307851 Msa0471090:intron 45.0%
AGGGAGAGTGGGTCAAAAAA+TGG - chr3_3:73307844-73307863 Msa0471090:intron 45.0%
TGGGTCAAAAAATGGTTGGG+AGG - chr3_3:73307852-73307871 Msa0471090:intron 45.0%
!! GCACCACATGTTTTTGTTGG+TGG + chr3_3:73307927-73307946 Msa0471080:intron 45.0%
AAACATGTGGTGCAAACCAC+CGG - chr3_3:73307934-73307953 Msa0471090:intron 45.0%
!!! TAGTTTTTTAGGGGTGTCGG+TGG - chr3_3:73308295-73308314 Msa0471090:intron 45.0%
CAAGCTGCAATGCAATTGCA+GGG + chr3_3:73308352-73308371 Msa0471080:intron 45.0%
ACAAGCTGCAATGCAATTGC+AGG + chr3_3:73308353-73308372 Msa0471080:intron 45.0%
CAATTGCATTGCAGCTTGTG+TGG - chr3_3:73308354-73308373 Msa0471090:intron 45.0%
ATTGCATTGCAGCTTGTGTG+GGG - chr3_3:73308356-73308375 Msa0471090:intron 45.0%
! ATGGTCCGGATTTCGTTTTC+CGG - chr3_3:73308439-73308458 Msa0471090:intron 45.0%
CGGATTATATAATCCGGACC+AGG - chr3_3:73308482-73308501 Msa0471090:intron 45.0%
! ATCCGGACCAGGGATATTTT+TGG - chr3_3:73308493-73308512 Msa0471090:intron 45.0%
TTAGTGGGACAAAAGCAGAG+AGG - chr3_3:73308654-73308673 Msa0471090:CDS 45.0%
AACAATGGAGGAAGACACTG+AGG + chr3_3:73308941-73308960 Msa0471080:three_prime_UTR 45.0%
TTCTGTAGGCAACACCAGAT+GGG + chr3_3:73309045-73309064 Msa0471080:three_prime_UTR 45.0%
TTTCTGTAGGCAACACCAGA+TGG + chr3_3:73309046-73309065 Msa0471080:three_prime_UTR 45.0%
GCTCGTGAAGCTGTAAATGA+AGG - chr3_3:73309085-73309104 Msa0471090:intron 45.0%
CTCATCCAATGTGGGATTCT+TGG + chr3_3:73309422-73309441 Msa0471080:intron 45.0%
ATCCCACATTGGATGAGATG+TGG - chr3_3:73309425-73309444 Msa0471090:intron 45.0%
GACTAAACATGCTTGCTTCC+TGG - chr3_3:73309661-73309680 Msa0471090:intron 45.0%
TGGATTGACGGTAGTAGGTT+AGG - chr3_3:73309772-73309791 Msa0471090:intron 45.0%
CTGTGAGTATGGGGGAATTA+TGG + chr3_3:73309865-73309884 Msa0471080:intron 45.0%
TGGATTGACTGTGAGTATGG+GGG + chr3_3:73309873-73309892 Msa0471080:intron 45.0%
ACATGCTCAAACTTGGCAGT+TGG - chr3_3:73309962-73309981 Msa0471090:intron 45.0%
GGGTTTCACTTGCAAGAACA+AGG + chr3_3:73310015-73310034 Msa0471080:intron 45.0%
CCAAAAATCTACCAGCACAG+GGG + chr3_3:73310035-73310054 Msa0471080:intron 45.0%
CCCAAAAATCTACCAGCACA+GGG + chr3_3:73310036-73310055 Msa0471080:intron 45.0%
!! CCCTGTGCTGGTAGATTTTT+GGG - chr3_3:73310033-73310052 Msa0471090:intron 45.0%
!! TGGTAGATTTTTGGGCACCA+TGG - chr3_3:73310041-73310060 Msa0471090:intron 45.0%
GAGCTAGCCAAAGAATATGC+TGG - chr3_3:73310100-73310119 Msa0471090:intron 45.0%
GTCTACTCTGTCTACAACTG+TGG - chr3_3:73310258-73310277 Msa0471090:intron 45.0%
TGCAGGGCATGGAAAAGAAT+GGG + chr3_3:73310405-73310424 Msa0471080:intron 45.0%
TTGCAGGGCATGGAAAAGAA+TGG + chr3_3:73310406-73310425 Msa0471080:intron 45.0%
! ATTCTTTTCCATGCCCTGCA+AGG - chr3_3:73310405-73310424 Msa0471090:intron 45.0%
! CAAACTACCTTTTGCCTTGC+AGG + chr3_3:73310422-73310441 Msa0471080:intron 45.0%
CGGAAAACGAATTCCAGACC+AGG + chr3_3:73307206-73307225 Msa0471080:three_prime_UTR 50.0%
TCTCCTAAGAGCCTAACCAC+TGG - chr3_3:73307468-73307487 Msa0471090:CDS 50.0%
ATCAGTAGCTTCCCTGTTGG+AGG - chr3_3:73307506-73307525 Msa0471090:CDS 50.0%
TCAGTAGCTTCCCTGTTGGA+GGG - chr3_3:73307507-73307526 Msa0471090:CDS 50.0%
AGTAGAAACCAATGCCGCTG+AGG - chr3_3:73307562-73307581 Msa0471090:CDS 50.0%
GTAGAAACCAATGCCGCTGA+GGG - chr3_3:73307563-73307582 Msa0471090:CDS 50.0%
GGTTCATCTGGAGGTCATGT+GGG + chr3_3:73307644-73307663 Msa0471080:three_prime_UTR 50.0%
TGGTTCATCTGGAGGTCATG+TGG + chr3_3:73307645-73307664 Msa0471080:three_prime_UTR 50.0%
GGGCCTCGTTGAAAACTTTC+AGG + chr3_3:73307715-73307734 Msa0471080:intron 50.0%
AGGCCAACGATGGAAAACCA+TGG - chr3_3:73307746-73307765 Msa0471090:intron 50.0%
AGAAGGAAGAAGAGGAGGAG+AGG - chr3_3:73307773-73307792 Msa0471090:intron 50.0%
GAAGGAAGAAGAGGAGGAGA+GGG - chr3_3:73307774-73307793 Msa0471090:intron 50.0%
GGAGAGGATGGTGTGAGAAA+TGG - chr3_3:73307799-73307818 Msa0471090:intron 50.0%
GACTGCATCAGTGTTATGGC+CGG + chr3_3:73307956-73307975 Msa0471080:intron 50.0%
GCCATAACACTGATGCAGTC+CGG - chr3_3:73307956-73307975 Msa0471090:intron 50.0%
TCCGGACTGCATCAGTGTTA+TGG + chr3_3:73307960-73307979 Msa0471080:intron 50.0%
GCAGTCCGGAAACTACAATC+CGG - chr3_3:73307970-73307989 Msa0471090:intron 50.0%
GAAGGCTCGAATTCATGTGG+TGG + chr3_3:73308700-73308719 Msa0471080:three_prime_UTR 50.0%
GTGTTCTCAGCTCAAAGAGC+AGG - chr3_3:73308983-73309002 Msa0471090:five_prime_UTR 50.0%
CATCTCAAGCGTGACTTGAG+TGG + chr3_3:73309383-73309402 Msa0471080:intron 50.0%
ATTTCCACAGCTAGGGGACT+TGG - chr3_3:73309564-73309583 Msa0471090:intron 50.0%
TTTCCACAGCTAGGGGACTT+GGG - chr3_3:73309565-73309584 Msa0471090:intron 50.0%
!! CCCCTGTGCTGGTAGATTTT+TGG - chr3_3:73310032-73310051 Msa0471090:intron 50.0%
GCCCAAAAATCTACCAGCAC+AGG + chr3_3:73310037-73310056 Msa0471080:intron 50.0%
!! GATTTTTGGGCACCATGGTG+TGG - chr3_3:73310046-73310065 Msa0471090:intron 50.0%
ATAGGCGCTATCATCCTGCA+TGG + chr3_3:73310073-73310092 Msa0471080:intron 50.0%
GACGCGCGAGAAAAGCCATA+GGG + chr3_3:73307163-73307182 Msa0471080:three_prime_UTR 55.0%
TTCCCTGTTGGAGGGTAACC+AGG - chr3_3:73307515-73307534 Msa0471090:CDS 55.0%
TCCCTGTTGGAGGGTAACCA+GGG - chr3_3:73307516-73307535 Msa0471090:CDS 55.0%
GAAGAAGAGGAGGAGAGGGT+GGG - chr3_3:73307778-73307797 Msa0471090:intron 55.0%
TGCATCAGTGTTATGGCCGG+TGG + chr3_3:73307953-73307972 Msa0471080:intron 55.0%
! ATTTTGCAGGGCACGCGAGA+AGG - chr3_3:73308518-73308537 Msa0471090:intron 55.0%
AAGACACTGAGGTCTGGCTG+TGG + chr3_3:73308930-73308949 Msa0471080:three_prime_UTR 55.0%
TGGAGGAAGACACTGAGGTC+TGG + chr3_3:73308936-73308955 Msa0471080:three_prime_UTR 55.0%
GTGCGCCAAGAATCCCACAT+TGG - chr3_3:73309414-73309433 Msa0471090:intron 55.0%
! GAGCAGTGACTGACTCAAGC+TGG - chr3_3:73309984-73310003 Msa0471090:intron 55.0%
TGCAAGTGAAACCCCTGTGC+TGG - chr3_3:73310021-73310040 Msa0471090:intron 55.0%
ATCCTGCATGGACCACACCA+TGG + chr3_3:73310061-73310080 Msa0471080:intron 55.0%
TCCATGCCCTGCAAGGCAAA+AGG - chr3_3:73310412-73310431 Msa0471090:intron 55.0%
! ACCTTTTGCCTTGCAGGGCA+TGG + chr3_3:73310416-73310435 Msa0471080:intron 55.0%
GCGCGAGAAAAGCCATAGGG+TGG + chr3_3:73307160-73307179 Msa0471080:three_prime_UTR 60.0%
GGACGCGCGAGAAAAGCCAT+AGG + chr3_3:73307164-73307183 Msa0471080:three_prime_UTR 60.0%
CCCCTGGTTACCCTCCAACA+GGG + chr3_3:73307520-73307539 Msa0471080:three_prime_UTR 60.0%
CCCTGTTGGAGGGTAACCAG+GGG - chr3_3:73307517-73307536 Msa0471090:CDS 60.0%
TCCCCTGGTTACCCTCCAAC+AGG + chr3_3:73307521-73307540 Msa0471080:three_prime_UTR 60.0%
TGTTGGAGGGTAACCAGGGG+AGG - chr3_3:73307520-73307539 Msa0471090:CDS 60.0%
GAAACCAATGCCGCTGAGGG+AGG - chr3_3:73307566-73307585 Msa0471090:CDS 60.0%
CAATGCCGCTGAGGGAGGTA+GGG - chr3_3:73307571-73307590 Msa0471090:CDS 60.0%
AATGCCGCTGAGGGAGGTAG+GGG - chr3_3:73307572-73307591 Msa0471090:CDS 60.0%
GGAAGAAGAGGAGGAGAGGG+TGG - chr3_3:73307777-73307796 Msa0471090:intron 60.0%
!! TAGGGGTGTCGGTGGTGTCA+TGG - chr3_3:73308303-73308322 Msa0471090:intron 60.0%
GTGGGATTCTTGGCGCACAC+AGG + chr3_3:73309412-73309431 Msa0471080:intron 60.0%
CTTCCCAAGTCCCCTAGCTG+TGG + chr3_3:73309571-73309590 Msa0471080:intron 60.0%
CACCATGGTGTGGTCCATGC+AGG - chr3_3:73310056-73310075 Msa0471090:intron 60.0%
TGGAGGGTAACCAGGGGAGG+AGG - chr3_3:73307523-73307542 Msa0471090:CDS 65.0%
GGAGGGTAACCAGGGGAGGA+GGG - chr3_3:73307524-73307543 Msa0471090:CDS 65.0%
GAGGGTAACCAGGGGAGGAG+GGG - chr3_3:73307525-73307544 Msa0471090:CDS 65.0%
TAACCAGGGGAGGAGGGGAG+AGG - chr3_3:73307530-73307549 Msa0471090:CDS 65.0%
CCTACCTCCCTCAGCGGCAT+TGG + chr3_3:73307573-73307592 Msa0471080:three_prime_UTR 65.0%
CCAATGCCGCTGAGGGAGGT+AGG - chr3_3:73307570-73307589 Msa0471090:CDS 65.0%
ATGCCGCTGAGGGAGGTAGG+GGG - chr3_3:73307573-73307592 Msa0471090:CDS 65.0%
AGAGGAGGAGAGGGTGGGAG+AGG - chr3_3:73307783-73307802 Msa0471090:intron 65.0%
GAGGAGAGGGTGGGAGAGGA+TGG - chr3_3:73307787-73307806 Msa0471090:intron 65.0%
ACGCGAGAAGGCAGCAGGGT+GGG - chr3_3:73308530-73308549 Msa0471090:intron 65.0%
CAGGGGAGGAGGGGAGAGGA+GGG - chr3_3:73307534-73307553 Msa0471090:CDS 70.0%
GCACCCCCTACCTCCCTCAG+CGG + chr3_3:73307579-73307598 Msa0471080:three_prime_UTR 70.0%
AGGGCACGCGAGAAGGCAGC+AGG - chr3_3:73308525-73308544 Msa0471090:intron 70.0%
GGGCACGCGAGAAGGCAGCA+GGG - chr3_3:73308526-73308545 Msa0471090:intron 70.0%
CACGCGAGAAGGCAGCAGGG+TGG - chr3_3:73308529-73308548 Msa0471090:intron 70.0%
CCTCCTCTCCCCTCCTCCCC+TGG + chr3_3:73307536-73307555 Msa0471080:three_prime_UTR 75.0%
CCAGGGGAGGAGGGGAGAGG+AGG - chr3_3:73307533-73307552 Msa0471090:CDS 75.0%
GGGAGGAGGGGAGAGGAGGG+CGG - chr3_3:73307537-73307556 Msa0471090:CDS 75.0%
GGAGGAGGGGAGAGGAGGGC+GGG - chr3_3:73307538-73307557 Msa0471090:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 73307029 73310649 73307029 ID=Msa0471090;Name=Msa0471090
chr3_3 mRNA 73307029 73310649 73307029 ID=Msa0471090-mRNA-1;Parent=Msa0471090;Name=Msa0471090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=432|1|1|1|0.5|0.33|3|349|175
chr3_3 exon 73307029 73307697 73307029 ID=Msa0471090-mRNA-1:exon:18573;Parent=Msa0471090-mRNA-1
chr3_3 exon 73308572 73309100 73308572 ID=Msa0471090-mRNA-1:exon:18572;Parent=Msa0471090-mRNA-1
chr3_3 exon 73310539 73310649 73310539 ID=Msa0471090-mRNA-1:exon:18571;Parent=Msa0471090-mRNA-1
chr3_3 five_prime_UTR 73310539 73310649 73310539 ID=Msa0471090-mRNA-1:five_prime_utr;Parent=Msa0471090-mRNA-1
chr3_3 five_prime_UTR 73308780 73309100 73308780 ID=Msa0471090-mRNA-1:five_prime_utr;Parent=Msa0471090-mRNA-1
chr3_3 CDS 73308572 73308779 73308572 ID=Msa0471090-mRNA-1:cds;Parent=Msa0471090-mRNA-1
chr3_3 CDS 73307378 73307697 73307378 ID=Msa0471090-mRNA-1:cds;Parent=Msa0471090-mRNA-1
chr3_3 three_prime_UTR 73307029 73307377 73307029 ID=Msa0471090-mRNA-1:three_prime_utr;Parent=Msa0471090-mRNA-1
Gene Sequence

>Msa0471090

ATGGCTTTGGAGAATTGTTTAAGAGTATCCACAGCCAGACCTCAGTGTCTTCCTCCATTGTTTCCAACTTCAAGGGAAAAGGTTGTGTTCTCAGCTCAAAGAGCAGGATTCAAGAAATCTGTGCTGAACTCAACACTATCATTCCCATCTGGTGTTGCCTACAGAAAATCTCGTTTTATTTGCAATGCTCGTGAAGCTGTAAATGAAGTTGGAGCAGTGACTGACTCAAGCTGGAATGACCTTGTTCTTGCAAGTGAAACCCCTGTGCTGGTAGATTTTTGGGCACCATGGTGTGGTCCATGCAGGATGATAGCGCCTATTATTGATGAGCTAGCCAAAGAATATGCTGGAAAAATTTCGTGCTACAAGCTCAACACAGATGAGAATCCAAACATAGCAACAAAGTACGGCATCAGAAGCATACCAACTGTTCTATTTTTCAAGAATGGAGAGAAAAAAGAAAGTGTAATTGGTGCAGTTCCAAAGTCTACTCTGTCTACAACTGTGGAAAAATATATTGATGCATGA

Protein sequence

>Msa0471090

MALENCLRVSTARPQCLPPLFPTSREKVVFSAQRAGFKKSVLNSTLSFPSGVAYRKSRFICNAREAVNEVGAVTDSSWNDLVLASETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKISCYKLNTDENPNIATKYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSTTVEKYIDA*