AlfalfaGEDB | Msa1432350

M. sativa cultivar zhongmu-4 / Msa1432350

KEGG: K09839
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0010028 GO:0015994 GO:0016108 GO:0016116 GO:0016122 GO:0016491 GO:0019752 GO:0019904 GO:0031976 GO:0031977 GO:0031984 GO:0032787 GO:0033013 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046422 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564
PFAM: PF07137.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432350	XP_003626506.2	88.454	485	29	5	1	483	1	460	0.0	834

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432350	sp\|Q9SM43\|VDE_SPIOL	76.423	369	87	0	115	483	104	472	0.0	628

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432350	G7L300	88.454	485	29	5	1	483	1	460	0.0	834

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1432350	0.807689	4.470626e-50	-8.615850e-47
Msa0000220	Msa1432350	0.929098	1.130087e-92	-8.615850e-47
Msa0001040	Msa1432350	0.825713	4.035162e-54	-8.615850e-47
Msa0001460	Msa1432350	0.828753	7.543927e-55	-8.615850e-47
Msa0001510	Msa1432350	0.853970	1.680224e-61	-8.615850e-47
Msa0001540	Msa1432350	0.826082	3.297798e-54	-8.615850e-47
Msa0002060	Msa1432350	0.801984	6.957943e-49	-8.615850e-47
Msa0002690	Msa1432350	0.818223	2.192430e-52	-8.615850e-47
Msa0002700	Msa1432350	0.819094	1.390865e-52	-8.615850e-47
Msa0003340	Msa1432350	0.802611	5.166639e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432350	MtrunA17_Chr7g0275111	88.454	485	29	5	1	483	1	460	0.0	834

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1432350	AT1G08550.2	78.862	369	77	1	116	483	94	462	602
Msa1432350	AT1G08550.1	78.862	369	77	1	116	483	94	462	602
Msa1432350	AT1G08550.3	78.862	369	77	1	116	483	94	462	602

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Find 120 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAATATGGCAGCTACT+TGG	0.458398	tig0027080:-49781	None:intergenic
AAAGAAGGTGTCAAAGAATG+TGG	0.601671	tig0027080:+53128	Msa1432350:three_prime_UTR
AACGATGCCTGGGATGGCTA+TGG	0.580936	tig0027080:+52509	Msa1432350:CDS
AACTTGTTGGTAATATAACA+TGG	0.607222	tig0027080:+51650	Msa1432350:CDS
AAGATTCTCCTCTCCCTTTG+TGG	0.398745	tig0027080:-49538	None:intergenic
AAGCTCTTCACAAGGACATC+CGG	0.409378	tig0027080:-51523	None:intergenic
AAGGAGAGAAAACCATTGTG+AGG	0.639539	tig0027080:+52699	Msa1432350:CDS
AATAATAATAATTATGTATA+TGG	0.253753	tig0027080:+49289	Msa1432350:exon
AATATTATCTTTAGAAGTGA+TGG	0.453607	tig0027080:+49332	Msa1432350:CDS
AATCCAAGTAGCTGCCATAT+TGG	0.365045	tig0027080:+49778	Msa1432350:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGACAGGTATTACAAAATG+GGG	+	tig0027080:49709-49728	Msa1432350:intron	30.0%
TATTACAAAATGGGGTGAAT+AGG	+	tig0027080:49717-49736	Msa1432350:CDS	30.0%
CAAACATGCACTTATATCAT+CGG	-	tig0027080:50034-50053	None:intergenic	30.0%
GATGATATAAGTGCATGTTT+GGG	+	tig0027080:50033-50052	Msa1432350:intron	30.0%
GCGGTGATAAAAAATGATAT+AGG	+	tig0027080:50057-50076	Msa1432350:intron	30.0%
GTAACGAAACAAACACTTAT+TGG	-	tig0027080:50098-50117	None:intergenic	30.0%
AGATGGGTCAAAATTGATTA+TGG	+	tig0027080:50124-50143	Msa1432350:intron	30.0%
GAAGTTAGAATCAATTATGG+AGG	+	tig0027080:50446-50465	Msa1432350:intron	30.0%
CATTGCAAATTTGCAATACA+TGG	-	tig0027080:50592-50611	None:intergenic	30.0%
CATTGAAGAGAAATTGAACA+GGG	-	tig0027080:50629-50648	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027080	gene	49151	53205	49151	ID=Msa1432350;Name=Msa1432350
tig0027080	mRNA	49151	53205	49151	ID=Msa1432350-mRNA-1;Parent=Msa1432350;Name=Msa1432350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=151\|1\|1\|1\|1\|1\|5\|250\|483
tig0027080	exon	49151	49586	49151	ID=Msa1432350-mRNA-1:exon:8025;Parent=Msa1432350-mRNA-1
tig0027080	exon	49716	49879	49716	ID=Msa1432350-mRNA-1:exon:8026;Parent=Msa1432350-mRNA-1
tig0027080	exon	51186	51282	51186	ID=Msa1432350-mRNA-1:exon:8027;Parent=Msa1432350-mRNA-1
tig0027080	exon	51406	51797	51406	ID=Msa1432350-mRNA-1:exon:8028;Parent=Msa1432350-mRNA-1
tig0027080	exon	52442	53205	52442	ID=Msa1432350-mRNA-1:exon:8029;Parent=Msa1432350-mRNA-1
tig0027080	five_prime_UTR	49151	49301	49151	ID=Msa1432350-mRNA-1:five_prime_utr;Parent=Msa1432350-mRNA-1
tig0027080	CDS	49302	49586	49302	ID=Msa1432350-mRNA-1:cds;Parent=Msa1432350-mRNA-1
tig0027080	CDS	49716	49879	49716	ID=Msa1432350-mRNA-1:cds;Parent=Msa1432350-mRNA-1
tig0027080	CDS	51186	51282	51186	ID=Msa1432350-mRNA-1:cds;Parent=Msa1432350-mRNA-1
tig0027080	CDS	51406	51797	51406	ID=Msa1432350-mRNA-1:cds;Parent=Msa1432350-mRNA-1
tig0027080	CDS	52442	52955	52442	ID=Msa1432350-mRNA-1:cds;Parent=Msa1432350-mRNA-1
tig0027080	three_prime_UTR	52956	53205	52956	ID=Msa1432350-mRNA-1:three_prime_utr;Parent=Msa1432350-mRNA-1

Gene Sequence

>Msa1432350

ATGTATATGGCAACTTTGGGTGCAAACTCAAATATTATCTTTAGAAGTGATGGAAGGTTTCATAGAACAACAACAACAGCAACAGCAAGGTTTCAATATTCTTCTCCTACTAGTAGTAGTAGTAGTACTGTGGCAGTGTTCAAAGTATTGTCTACAACTAGAAAACAACCTACACGATTGCATTTCTTAAGACATCATCGTAATTCTCGCGGTTCGGTATGCCAATGTCAACAACACCACAAAGGGAGAGGAGAATCTTCTCCCAATCCTTCAAACATCCCACGGGTATTACAAAATGGGGTGAATAGGATGCTTGTTGTTCTTGAAGATTGGAGAAATTCACGCATAATCCAAGTAGCTGCCATATTGGTTTCCATTTTAATGATTGTTCCATCAGCTGATGCTGTTGATGCACTCAAAACTTGTGCTTGTTTGCTCAAAGAATGCAGGGTAGAATTGGCTAAGTGTCTTGCAAACCCATCATGTGCTGCCAACATTGCTTGTCTCCAAACTTGCAACAATAGACCAGATGAGACTGAATGCCAAATCAAATGTGGGGATGTGTTTGAAAACAAAGTGGTTGATGAATTCAATGAGTGCGCTGTATCGAGGAAGAAATGTGTACCTAAGAAATCTGATGTGGGAGAATTTCCTGTTCCAAACCCGGATGTCCTTGTGAAGAGCTTTAATATTGCAGATTTTAGTGGCAAGTGGTTCATCACCAGTGGCTTAAATCCTACATTCGATGCCTTTGACTGCCAATTACATGAATTTCACACAGAATCAAATAAACTTGTTGGTAATATAACATGGAGGATACCAACTCCAGATGGTGGATTTCTTACAAGGTCAGCCGTGCAGAAATTTGTTCAAGATCCTTCAAATCCAGGAATCCTCTATAATCATGATAATGAGTACCTTAACTATCAAGATGACTGGTATGTCGTGTCATCTCAAATCGAGAATAAACCAGATGATTATATATTTATATACTACCGAGGCAGAAACGATGCCTGGGATGGCTATGGTGGTGCCGTTGTGTACACAAGGAGTGCAGTTTTACCTGAATCTATTATTCCTGAACTTGATAGAGCGGCAAAGAGTGTAGGAAGAGACTTTAGCAAGTTCATCAGAACAGATAACACATGTGGACCAGAGCCTTCCATTGTGGAAAGGCTGGAGAAAAAGGTAGAGGAAGGAGAGAAAACCATTGTGAGGGAAGTTGAAGAGTTAGAAGAGGAGGTGGAGAAGGAGGTAGAGAAGGTTGGTAAAACAGAAATGACCTTGTTAGAAAGGCTGGCAGAAGGGTTTAAAGTGTTTCAAGAAGATGAGGAAAATTTCTTAAGAGGGTTATCTAAAGAAGAAATGGAGATACTGGACAGTCTCAAATTGGAAGCTGAGGAAGTAGAAGAGCTCTTTGGACGTGCCTTGCCGCTAAGGAAACTAAGATAA

Protein sequence

>Msa1432350

MYMATLGANSNIIFRSDGRFHRTTTTATARFQYSSPTSSSSSTVAVFKVLSTTRKQPTRLHFLRHHRNSRGSVCQCQQHHKGRGESSPNPSNIPRVLQNGVNRMLVVLEDWRNSRIIQVAAILVSILMIVPSADAVDALKTCACLLKECRVELAKCLANPSCAANIACLQTCNNRPDETECQIKCGDVFENKVVDEFNECAVSRKKCVPKKSDVGEFPVPNPDVLVKSFNIADFSGKWFITSGLNPTFDAFDCQLHEFHTESNKLVGNITWRIPTPDGGFLTRSAVQKFVQDPSNPGILYNHDNEYLNYQDDWYVVSSQIENKPDDYIFIYYRGRNDAWDGYGGAVVYTRSAVLPESIIPELDRAAKSVGRDFSKFIRTDNTCGPEPSIVERLEKKVEEGEKTIVREVEELEEEVEKEVEKVGKTEMTLLERLAEGFKVFQEDEENFLRGLSKEEMEILDSLKLEAEEVEELFGRALPLRKLR*