AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428990 MtrunA17_Chr3g0144291 98.340 241 4 0 1 241 1 241 0.0 496
Msa1428990 MtrunA17_Chr6g0463171 95.775 71 3 0 148 218 9 79 1.02e-45 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428990 AT1G76450.1 56.048 248 101 4 1 241 1 247 4.00e-94 276

Find 86 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATTAGATTCCTCTTT+TGG 0.168788 tig0026425:+23474 None:intergenic
GAAGTTAACCTTCTGAATTT+TGG 0.181807 tig0026425:+22596 None:intergenic
GAGAGAGAAGCTGATCTTAA+AGG 0.213636 tig0026425:-24301 Msa1428990:five_prime_UTR
GGTTTGTTGCTTACGGAAAA+TGG 0.261563 tig0026425:-22168 Msa1428990:three_prime_UTR
GCTATGCATTTATACTGTTT+TGG 0.274479 tig0026425:+22238 None:intergenic
AAACATCTATATTCAGCTAT+TGG 0.276276 tig0026425:-22851 Msa1428990:CDS
TTTATGATGTTCCACGGTTA+TGG 0.286936 tig0026425:+24113 None:intergenic
TAAGAAAATATTCATTCTTC+AGG 0.297077 tig0026425:-21846 None:intergenic
TTTGGATCAGAGTGGCAAAT+TGG 0.331290 tig0026425:-23540 Msa1428990:intron
AAGGAATGGCATCCATTTCA+TGG 0.346543 tig0026425:-24282 Msa1428990:exon
ATAGGAAAGAATGATGAAAA+AGG 0.359605 tig0026425:-22145 Msa1428990:three_prime_UTR
CTCTCTCTCCTCTCATCCTT+CGG 0.362366 tig0026425:+24319 None:intergenic
AACATCTATATTCAGCTATT+GGG 0.365323 tig0026425:-22850 Msa1428990:CDS
GATTCCATCTTAGTGAAATC+TGG 0.369687 tig0026425:+23341 None:intergenic
CCCTTGTGGTTTGTTGCTTA+CGG 0.388072 tig0026425:-22175 Msa1428990:three_prime_UTR
TGTAATTAAACAGATAATAA+AGG 0.393288 tig0026425:-24344 Msa1428990:five_prime_UTR
TTATGATGTTCCACGGTTAT+GGG 0.420864 tig0026425:+24114 None:intergenic
AGGACCTTTGTCGCCGGCAG+TGG 0.426577 tig0026425:+24231 None:intergenic
AACTGCTTTCTACCCAAAAG+AGG 0.462382 tig0026425:-23487 Msa1428990:CDS
AAGGGATTACTCCATCCGTC+AGG 0.475210 tig0026425:-22048 Msa1428990:three_prime_UTR
TCAGAGTGGCAAATTGGAAC+AGG 0.480833 tig0026425:-23534 Msa1428990:intron
GGGTCCAGATTTCACTAAGA+TGG 0.482457 tig0026425:-23345 Msa1428990:CDS
TTTGACAAACATTTCTAGCA+TGG 0.489768 tig0026425:+22310 None:intergenic
TTAGTGGGTTGGACAGAAGC+TGG 0.491375 tig0026425:-23187 Msa1428990:CDS
ATCCGACCAACTGCCACTGC+CGG 0.492198 tig0026425:-24244 Msa1428990:CDS
CTACATGCAGTATGGGGAAG+AGG 0.496030 tig0026425:-22637 Msa1428990:intron
GCTATTGGGATGTTAACAAA+TGG 0.498373 tig0026425:-22836 Msa1428990:CDS
GCGATGTAGGATCTTCTTGA+TGG 0.498530 tig0026425:+21995 None:intergenic
TTCACTAAGATGGAATCATT+CGG 0.500644 tig0026425:-23335 Msa1428990:CDS
TTCAACTTACGTTGCGATGT+AGG 0.502534 tig0026425:+21982 None:intergenic
TATGAATATGACAGGTTAGT+GGG 0.511045 tig0026425:-23202 Msa1428990:intron
GTTGCTTACGGAAAATGGAT+AGG 0.512749 tig0026425:-22163 Msa1428990:three_prime_UTR
GAAGTGAATACAAGTACCTT+CGG 0.514178 tig0026425:-22208 Msa1428990:three_prime_UTR
CGCCGGCAGTGGCAGTTGGT+CGG 0.516601 tig0026425:+24242 None:intergenic
TTCTTATATTCGAGACTGGA+GGG 0.518993 tig0026425:+21863 None:intergenic
ATCAGCTCATCCTCACAAGA+AGG 0.525102 tig0026425:-23921 Msa1428990:intron
AACAGACTGTATACAGTGAC+AGG 0.526154 tig0026425:-22806 Msa1428990:CDS
ATAGATTGTAAATCATCTAA+AGG 0.527370 tig0026425:-23134 Msa1428990:intron
TAGACAGCTGAACCATGAAA+TGG 0.530629 tig0026425:+24270 None:intergenic
TTATGAATATGACAGGTTAG+TGG 0.533288 tig0026425:-23203 Msa1428990:intron
ATTGGAACAGGAGAATCTGC+AGG 0.533573 tig0026425:-23522 Msa1428990:CDS
TTGTCGCCGGCAGTGGCAGT+TGG 0.534455 tig0026425:+24238 None:intergenic
GAGTATACACTGCAAAGTCC+TGG 0.539737 tig0026425:-22884 Msa1428990:CDS
ACTGCCACTGCCGGCGACAA+AGG 0.540659 tig0026425:-24235 Msa1428990:intron
CTATTGAATGTTGACTCGGT+TGG 0.547055 tig0026425:+21929 None:intergenic
ATCTACTGACTCAAATGCAT+TGG 0.548024 tig0026425:-23838 Msa1428990:CDS
TTGGGATGTTAACAAATGGC+TGG 0.548862 tig0026425:-22832 Msa1428990:CDS
CTCTGTAAACGCATCCCTGA+CGG 0.553705 tig0026425:+22033 None:intergenic
AGATGTTTGCGACCCTCACC+AGG 0.558500 tig0026425:+22866 None:intergenic
TCAAATGCATTGGCACTCAA+TGG 0.559351 tig0026425:-23828 Msa1428990:intron
AGAAGCTGATCTTAAAGGAA+TGG 0.566145 tig0026425:-24296 Msa1428990:exon
TGAAGAATTTGCTGACACTC+TGG 0.569769 tig0026425:-23306 Msa1428990:intron
GTTGATTCATCTTAAGACTG+TGG 0.571726 tig0026425:+21958 None:intergenic
TGGTGAAGGACCTTTGTCGC+CGG 0.574688 tig0026425:+24225 None:intergenic
TTTCTTATATTCGAGACTGG+AGG 0.577897 tig0026425:+21862 None:intergenic
AATATGACAGGTTAGTGGGT+TGG 0.579569 tig0026425:-23198 Msa1428990:intron
AAAGAGGAATCTAATTCCAA+TGG 0.583004 tig0026425:-23471 Msa1428990:intron
GCAGTGAGCGTTGTGATCAC+AGG 0.585258 tig0026425:-23371 Msa1428990:intron
ATGAGTTTAGCAGCCACACC+AGG 0.586123 tig0026425:+23155 None:intergenic
TAAAGGAACCGAAGGATGAG+AGG 0.588015 tig0026425:-24327 Msa1428990:five_prime_UTR
TAAGCTATTGAATGTTGACT+CGG 0.592204 tig0026425:+21925 None:intergenic
TGAAGCTGCAATTGCTGCGG+TGG 0.592489 tig0026425:+23860 None:intergenic
TACACTGCAAAGTCCTGGTG+AGG 0.595200 tig0026425:-22879 Msa1428990:CDS
GTATGCTTCCAAAATTCAGA+AGG 0.596845 tig0026425:-22604 Msa1428990:intron
AGCGTTGTGATCACAGGAGT+GGG 0.598156 tig0026425:-23365 Msa1428990:CDS
ACAGATAATAAAGGAACCGA+AGG 0.598767 tig0026425:-24335 Msa1428990:five_prime_UTR
AACCGCAAGTCCTTCTTGTG+AGG 0.610452 tig0026425:+23911 None:intergenic
ACTGTATACAGTGACAGGAC+AGG 0.614449 tig0026425:-22801 Msa1428990:intron
AATGTAATGAAAACATCATG+AGG 0.616777 tig0026425:+22337 None:intergenic
GAGCGTTGTGATCACAGGAG+TGG 0.623369 tig0026425:-23366 Msa1428990:CDS
GTAAACGCATCCCTGACGGA+TGG 0.625811 tig0026425:+22037 None:intergenic
ATGTAATGAAAACATCATGA+GGG 0.634868 tig0026425:+22338 None:intergenic
TCCGTAAGCAACAAACCACA+AGG 0.635610 tig0026425:+22174 None:intergenic
AGGGATTACTCCATCCGTCA+GGG 0.639880 tig0026425:-22047 Msa1428990:three_prime_UTR
TCGGTTAAACATTACCCTTG+TGG 0.650079 tig0026425:-22189 Msa1428990:three_prime_UTR
CAAGGGTAATGTTTAACCGA+AGG 0.654529 tig0026425:+22192 None:intergenic
CGTCAGGGATGCGTTTACAG+AGG 0.673387 tig0026425:-22032 Msa1428990:three_prime_UTR
TTGGAACAGGAGAATCTGCA+GGG 0.677070 tig0026425:-23521 Msa1428990:CDS
ATCCTCACAAGAAGGACTTG+CGG 0.678162 tig0026425:-23913 Msa1428990:CDS
AGTTTAGCAGCCACACCAGG+TGG 0.683789 tig0026425:+23158 None:intergenic
TTTATCATCTCCCATAACCG+TGG 0.686526 tig0026425:-24124 Msa1428990:CDS
ACACTGCAAAGTCCTGGTGA+GGG 0.688636 tig0026425:-22878 Msa1428990:CDS
TTCAAGATAGATATTCCACA+AGG 0.719102 tig0026425:-23657 Msa1428990:intron
CCGTAAGCAACAAACCACAA+GGG 0.722121 tig0026425:+22175 None:intergenic
AGATGAAGCTGCAATTGCTG+CGG 0.735552 tig0026425:+23857 None:intergenic
GTGTGTCGCAGATGTGACTG+AGG 0.758838 tig0026425:-23712 Msa1428990:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAATTAAACAGATAATAA+AGG - tig0026425:21853-21872 Msa1428990:three_prime_UTR 15.0%
!!! ACTTTTTTGTTTTAATGATT+TGG - tig0026425:22639-22658 Msa1428990:intron 15.0%
!! TAATATATTATGAATATGAC+AGG - tig0026425:22987-23006 Msa1428990:intron 15.0%
!!! ATAGTAAATATCATACTTTT+AGG + tig0026425:23915-23934 None:intergenic 15.0%
!! AAAAAAAAAAAAGAGAAAGT+AGG - tig0026425:24081-24100 Msa1428990:intron 15.0%
!!! TATATAGTTTTGAATTTTGA+AGG - tig0026425:24113-24132 Msa1428990:CDS 15.0%
!!! ATACTGTTCAATATTTCTAA+TGG - tig0026425:22026-22045 Msa1428990:three_prime_UTR 20.0%
!!! TTTTCTTACAGTAAATTTTG+TGG + tig0026425:22116-22135 None:intergenic 20.0%
!! ATAGATTGTAAATCATCTAA+AGG - tig0026425:23063-23082 Msa1428990:intron 20.0%
!!! TACTAAGCAACATTATTTTT+TGG + tig0026425:23517-23536 None:intergenic 20.0%
!! TAAAATATTTGACAGAACAA+AGG - tig0026425:23642-23661 Msa1428990:intron 20.0%
!!! TTTGAATTTTGAAGGAAAAA+AGG - tig0026425:24121-24140 Msa1428990:CDS 20.0%
!!! TTGAATTTTGAAGGAAAAAA+GGG - tig0026425:24122-24141 Msa1428990:CDS 20.0%
! ATTTAGTATACAAATGAGGA+AGG + tig0026425:22002-22021 None:intergenic 25.0%
! GCAAATTTAGTATACAAATG+AGG + tig0026425:22006-22025 None:intergenic 25.0%
! TTGTATTGTTACTACTACAT+CGG - tig0026425:22425-22444 Msa1428990:intron 25.0%
! TTTCAATTAAATTCACCTTG+TGG + tig0026425:22558-22577 None:intergenic 25.0%
! GGTGAATTTAATTGAAAGTT+TGG - tig0026425:22561-22580 Msa1428990:intron 25.0%
!! TTTGAGTTTGATTATACCAT+TGG + tig0026425:22745-22764 None:intergenic 25.0%
! GATTCATAACTATTATTTGC+TGG - tig0026425:22930-22949 Msa1428990:intron 25.0%
! AAGCAAAATAGTTATGAATC+TGG + tig0026425:22968-22987 None:intergenic 25.0%
! AGGGAAAGAAAATATGTTAT+AGG - tig0026425:23162-23181 Msa1428990:CDS 25.0%
! ACTTCTCAAAACTGAAATTA+TGG - tig0026425:23226-23245 Msa1428990:intron 25.0%
! CTTCTCAAAACTGAAATTAT+GGG - tig0026425:23227-23246 Msa1428990:intron 25.0%
! AAACATCTATATTCAGCTAT+TGG - tig0026425:23346-23365 Msa1428990:CDS 25.0%
! AACATCTATATTCAGCTATT+GGG - tig0026425:23347-23366 Msa1428990:CDS 25.0%
! ATACTCAAAGATATTCATTC+TGG - tig0026425:23670-23689 Msa1428990:CDS 25.0%
!! TTTTTCTTTGCTTTCTTTCA+TGG - tig0026425:23833-23852 Msa1428990:CDS 25.0%
!! TTTTCTTTGCTTTCTTTCAT+GGG - tig0026425:23834-23853 Msa1428990:CDS 25.0%
! ATGTAATGAAAACATCATGA+GGG + tig0026425:23862-23881 None:intergenic 25.0%
! AATGTAATGAAAACATCATG+AGG + tig0026425:23863-23882 None:intergenic 25.0%
!!! TTTTGGTTTATCAGTTTTGA+AGG + tig0026425:23945-23964 None:intergenic 25.0%
! ATAGGAAAGAATGATGAAAA+AGG - tig0026425:24052-24071 Msa1428990:intron 25.0%
!!! TGAATTTTGAAGGAAAAAAG+GGG - tig0026425:24123-24142 Msa1428990:CDS 25.0%
!! TATTTTCTTATATTCGAGAC+TGG + tig0026425:24341-24360 None:intergenic 25.0%
!!! TTTGCGTAAGTTTTTTGTTC+AGG - tig0026425:22050-22069 Msa1428990:three_prime_UTR 30.0%
!!! TCTTGTTTTATGATGTTCCA+CGG + tig0026425:22093-22112 None:intergenic 30.0%
TTCAATGTTTAAGCATGATG+AGG + tig0026425:22177-22196 None:intergenic 30.0%
TTCAAGATAGATATTCCACA+AGG - tig0026425:22540-22559 Msa1428990:intron 30.0%
! TTTAATGATTTGGATCAGAG+TGG - tig0026425:22649-22668 Msa1428990:intron 30.0%
! TGGAATTAGATTCCTCTTTT+GGG + tig0026425:22725-22744 None:intergenic 30.0%
! TTGGAATTAGATTCCTCTTT+TGG + tig0026425:22726-22745 None:intergenic 30.0%
AAAGAGGAATCTAATTCCAA+TGG - tig0026425:22726-22745 Msa1428990:intron 30.0%
TTCACTAAGATGGAATCATT+CGG - tig0026425:22862-22881 Msa1428990:CDS 30.0%
TTATGAATATGACAGGTTAG+TGG - tig0026425:22994-23013 Msa1428990:intron 30.0%
TATGAATATGACAGGTTAGT+GGG - tig0026425:22995-23014 Msa1428990:intron 30.0%
ACATTGCAGTACATGTTATA+AGG - tig0026425:23128-23147 Msa1428990:intron 30.0%
TTATAAGGTTGCAACTGTAA+GGG - tig0026425:23143-23162 Msa1428990:CDS 30.0%
! CTAAATGTTCGTTAGTCTAA+TGG - tig0026425:23469-23488 Msa1428990:intron 30.0%
! GAAGTTAACCTTCTGAATTT+TGG + tig0026425:23604-23623 None:intergenic 30.0%
! AGAAGGTTAACTTCTTTTCA+TGG - tig0026425:23610-23629 Msa1428990:intron 30.0%
AAGATATTCATTCTGGCATT+TGG - tig0026425:23677-23696 Msa1428990:CDS 30.0%
!! TTTGACAAACATTTCTAGCA+TGG + tig0026425:23890-23909 None:intergenic 30.0%
! GCTATGCATTTATACTGTTT+TGG + tig0026425:23962-23981 None:intergenic 30.0%
GAAAGAATGATGAAAAAGGA+AGG - tig0026425:24056-24075 Msa1428990:intron 30.0%
!! GAATTTTGAAGGAAAAAAGG+GGG - tig0026425:24124-24143 Msa1428990:CDS 30.0%
! TAAGCTATTGAATGTTGACT+CGG + tig0026425:24275-24294 None:intergenic 30.0%
ACAGATAATAAAGGAACCGA+AGG - tig0026425:21862-21881 Msa1428990:three_prime_UTR 35.0%
AGAAGCTGATCTTAAAGGAA+TGG - tig0026425:21901-21920 Msa1428990:three_prime_UTR 35.0%
TTATGATGTTCCACGGTTAT+GGG + tig0026425:22086-22105 None:intergenic 35.0%
TTTATGATGTTCCACGGTTA+TGG + tig0026425:22087-22106 None:intergenic 35.0%
TGATGAGGCACAAGAAATAA+TGG + tig0026425:22162-22181 None:intergenic 35.0%
!! ATCTACTGACTCAAATGCAT+TGG - tig0026425:22359-22378 Msa1428990:three_prime_UTR 35.0%
TGTTACTACTACATCGGAAA+TGG - tig0026425:22431-22450 Msa1428990:intron 35.0%
GATTCCATCTTAGTGAAATC+TGG + tig0026425:22859-22878 None:intergenic 35.0%
GTTATAAGGTTGCAACTGTA+AGG - tig0026425:23142-23161 Msa1428990:CDS 35.0%
! GCTAGTTTGCCTTGAAAAAA+CGG - tig0026425:23271-23290 Msa1428990:intron 35.0%
!!! AATCCTGAACCGTTTTTTCA+AGG + tig0026425:23283-23302 None:intergenic 35.0%
GCTATTGGGATGTTAACAAA+TGG - tig0026425:23361-23380 Msa1428990:CDS 35.0%
GTATGCTTCCAAAATTCAGA+AGG - tig0026425:23593-23612 Msa1428990:intron 35.0%
ACAGCATAGTTCATTGAAGT+AGG - tig0026425:23710-23729 Msa1428990:intron 35.0%
GAAGTGAATACAAGTACCTT+CGG - tig0026425:23989-24008 Msa1428990:intron 35.0%
! GTTGATTCATCTTAAGACTG+TGG + tig0026425:24242-24261 None:intergenic 35.0%
TTCTTATATTCGAGACTGGA+GGG + tig0026425:24337-24356 None:intergenic 35.0%
TTTCTTATATTCGAGACTGG+AGG + tig0026425:24338-24357 None:intergenic 35.0%
GAGAGAGAAGCTGATCTTAA+AGG - tig0026425:21896-21915 Msa1428990:three_prime_UTR 40.0%
AAGGAATGGCATCCATTTCA+TGG - tig0026425:21915-21934 Msa1428990:three_prime_UTR 40.0%
TAGACAGCTGAACCATGAAA+TGG + tig0026425:21930-21949 None:intergenic 40.0%
ATACAAATGAGGAAGGTGAG+TGG + tig0026425:21995-22014 None:intergenic 40.0%
TTTATCATCTCCCATAACCG+TGG - tig0026425:22073-22092 Msa1428990:three_prime_UTR 40.0%
! TCAAATGCATTGGCACTCAA+TGG - tig0026425:22369-22388 Msa1428990:three_prime_UTR 40.0%
TTTGGATCAGAGTGGCAAAT+TGG - tig0026425:22657-22676 Msa1428990:intron 40.0%
AACTGCTTTCTACCCAAAAG+AGG - tig0026425:22710-22729 Msa1428990:intron 40.0%
!! TGAAGAATTTGCTGACACTC+TGG - tig0026425:22891-22910 Msa1428990:CDS 40.0%
! AATATGACAGGTTAGTGGGT+TGG - tig0026425:22999-23018 Msa1428990:intron 40.0%
TTGCCTTGAAAAAACGGTTC+AGG - tig0026425:23277-23296 Msa1428990:intron 40.0%
TTGGGATGTTAACAAATGGC+TGG - tig0026425:23365-23384 Msa1428990:CDS 40.0%
AACAGACTGTATACAGTGAC+AGG - tig0026425:23391-23410 Msa1428990:intron 40.0%
AGCTTCCACTTGAAATTTGC+AGG - tig0026425:23760-23779 Msa1428990:intron 40.0%
AACTGCCTGCAAATTTCAAG+TGG + tig0026425:23768-23787 None:intergenic 40.0%
CAAGGGTAATGTTTAACCGA+AGG + tig0026425:24008-24027 None:intergenic 40.0%
TCGGTTAAACATTACCCTTG+TGG - tig0026425:24008-24027 Msa1428990:intron 40.0%
!! GGTTTGTTGCTTACGGAAAA+TGG - tig0026425:24029-24048 Msa1428990:intron 40.0%
GTTGCTTACGGAAAATGGAT+AGG - tig0026425:24034-24053 Msa1428990:intron 40.0%
TGAAGGAAAAAAGGGGGAAA+AGG - tig0026425:24130-24149 Msa1428990:intron 40.0%
GAAGGAAAAAAGGGGGAAAA+GGG - tig0026425:24131-24150 Msa1428990:intron 40.0%
TTCAACTTACGTTGCGATGT+AGG + tig0026425:24218-24237 None:intergenic 40.0%
!! CTATTGAATGTTGACTCGGT+TGG + tig0026425:24271-24290 None:intergenic 40.0%
TAAAGGAACCGAAGGATGAG+AGG - tig0026425:21870-21889 Msa1428990:three_prime_UTR 45.0%
ATCAGCTCATCCTCACAAGA+AGG - tig0026425:22276-22295 Msa1428990:three_prime_UTR 45.0%
ATCCTCACAAGAAGGACTTG+CGG - tig0026425:22284-22303 Msa1428990:three_prime_UTR 45.0%
AGATGAAGCTGCAATTGCTG+CGG + tig0026425:22343-22362 None:intergenic 45.0%
TCAGAGTGGCAAATTGGAAC+AGG - tig0026425:22663-22682 Msa1428990:intron 45.0%
ATTGGAACAGGAGAATCTGC+AGG - tig0026425:22675-22694 Msa1428990:intron 45.0%
TTGGAACAGGAGAATCTGCA+GGG - tig0026425:22676-22695 Msa1428990:intron 45.0%
GGGTCCAGATTTCACTAAGA+TGG - tig0026425:22852-22871 Msa1428990:CDS 45.0%
AGAAGCTGGAAAAAACCACC+TGG - tig0026425:23024-23043 Msa1428990:intron 45.0%
GAGTATACACTGCAAAGTCC+TGG - tig0026425:23313-23332 Msa1428990:CDS 45.0%
ACTGTATACAGTGACAGGAC+AGG - tig0026425:23396-23415 Msa1428990:intron 45.0%
TTTCCTGCCTACATGCAGTA+TGG - tig0026425:23552-23571 Msa1428990:intron 45.0%
TTCCTGCCTACATGCAGTAT+GGG - tig0026425:23553-23572 Msa1428990:intron 45.0%
CCGTAAGCAACAAACCACAA+GGG + tig0026425:24025-24044 None:intergenic 45.0%
!! CCCTTGTGGTTTGTTGCTTA+CGG - tig0026425:24022-24041 Msa1428990:intron 45.0%
TCCGTAAGCAACAAACCACA+AGG + tig0026425:24026-24045 None:intergenic 45.0%
GCGATGTAGGATCTTCTTGA+TGG + tig0026425:24205-24224 None:intergenic 45.0%
CTCTCTCTCCTCTCATCCTT+CGG + tig0026425:21881-21900 None:intergenic 50.0%
ATGAGGAAGGTGAGTGGTGA+AGG + tig0026425:21989-22008 None:intergenic 50.0%
AACCGCAAGTCCTTCTTGTG+AGG + tig0026425:22289-22308 None:intergenic 50.0%
AGCGTTGTGATCACAGGAGT+GGG - tig0026425:22832-22851 Msa1428990:CDS 50.0%
!! TTAGTGGGTTGGACAGAAGC+TGG - tig0026425:23010-23029 Msa1428990:intron 50.0%
CTGGAAAAAACCACCTGGTG+TGG - tig0026425:23029-23048 Msa1428990:intron 50.0%
ATGAGTTTAGCAGCCACACC+AGG + tig0026425:23045-23064 None:intergenic 50.0%
TACACTGCAAAGTCCTGGTG+AGG - tig0026425:23318-23337 Msa1428990:CDS 50.0%
ACACTGCAAAGTCCTGGTGA+GGG - tig0026425:23319-23338 Msa1428990:CDS 50.0%
TCCTGCCTACATGCAGTATG+GGG - tig0026425:23554-23573 Msa1428990:intron 50.0%
CTCTTCCCCATACTGCATGT+AGG + tig0026425:23562-23581 None:intergenic 50.0%
CTACATGCAGTATGGGGAAG+AGG - tig0026425:23560-23579 Msa1428990:intron 50.0%
AAGGGATTACTCCATCCGTC+AGG - tig0026425:24149-24168 Msa1428990:intron 50.0%
AGGGATTACTCCATCCGTCA+GGG - tig0026425:24150-24169 Msa1428990:intron 50.0%
CTCTGTAAACGCATCCCTGA+CGG + tig0026425:24167-24186 None:intergenic 50.0%
TGGTGAAGGACCTTTGTCGC+CGG + tig0026425:21975-21994 None:intergenic 55.0%
TGAAGCTGCAATTGCTGCGG+TGG + tig0026425:22340-22359 None:intergenic 55.0%
GTGTGTCGCAGATGTGACTG+AGG - tig0026425:22485-22504 Msa1428990:intron 55.0%
! GCAGTGAGCGTTGTGATCAC+AGG - tig0026425:22826-22845 Msa1428990:CDS 55.0%
! GAGCGTTGTGATCACAGGAG+TGG - tig0026425:22831-22850 Msa1428990:CDS 55.0%
AGTTTAGCAGCCACACCAGG+TGG + tig0026425:23042-23061 None:intergenic 55.0%
AGATGTTTGCGACCCTCACC+AGG + tig0026425:23334-23353 None:intergenic 55.0%
CTGCAGTGTCTGTGTGTGTC+AGG - tig0026425:23433-23452 Msa1428990:intron 55.0%
TCCCCATACTGCATGTAGGC+AGG + tig0026425:23558-23577 None:intergenic 55.0%
GTAAACGCATCCCTGACGGA+TGG + tig0026425:24163-24182 None:intergenic 55.0%
CGTCAGGGATGCGTTTACAG+AGG - tig0026425:24165-24184 Msa1428990:intron 55.0%
ATCCGACCAACTGCCACTGC+CGG - tig0026425:21953-21972 Msa1428990:three_prime_UTR 60.0%
TTGTCGCCGGCAGTGGCAGT+TGG + tig0026425:21962-21981 None:intergenic 65.0%
ACTGCCACTGCCGGCGACAA+AGG - tig0026425:21962-21981 Msa1428990:three_prime_UTR 65.0%
AGGACCTTTGTCGCCGGCAG+TGG + tig0026425:21969-21988 None:intergenic 65.0%
CGCCGGCAGTGGCAGTTGGT+CGG + tig0026425:21958-21977 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0026425 gene 21849 24370 21849 ID=Msa1428990;Name=Msa1428990
tig0026425 mRNA 21849 24370 21849 ID=Msa1428990-mRNA-1;Parent=Msa1428990;Name=Msa1428990-mRNA-1;_AED=0.10;_eAED=0.10;_QI=71|1|1|1|0.77|0.8|10|562|241
tig0026425 exon 21849 22437 21849 ID=Msa1428990-mRNA-1:exon:6278;Parent=Msa1428990-mRNA-1
tig0026425 exon 22605 22649 22605 ID=Msa1428990-mRNA-1:exon:6277;Parent=Msa1428990-mRNA-1
tig0026425 exon 22802 22920 22802 ID=Msa1428990-mRNA-1:exon:6276;Parent=Msa1428990-mRNA-1
tig0026425 exon 23135 23210 23135 ID=Msa1428990-mRNA-1:exon:6275;Parent=Msa1428990-mRNA-1
tig0026425 exon 23307 23389 23307 ID=Msa1428990-mRNA-1:exon:6274;Parent=Msa1428990-mRNA-1
tig0026425 exon 23472 23552 23472 ID=Msa1428990-mRNA-1:exon:6273;Parent=Msa1428990-mRNA-1
tig0026425 exon 23658 23723 23658 ID=Msa1428990-mRNA-1:exon:6272;Parent=Msa1428990-mRNA-1
tig0026425 exon 23829 23938 23829 ID=Msa1428990-mRNA-1:exon:6271;Parent=Msa1428990-mRNA-1
tig0026425 exon 24093 24147 24093 ID=Msa1428990-mRNA-1:exon:6270;Parent=Msa1428990-mRNA-1
tig0026425 exon 24236 24370 24236 ID=Msa1428990-mRNA-1:exon:6269;Parent=Msa1428990-mRNA-1
tig0026425 five_prime_UTR 24300 24370 24300 ID=Msa1428990-mRNA-1:five_prime_utr;Parent=Msa1428990-mRNA-1
tig0026425 CDS 24236 24299 24236 ID=Msa1428990-mRNA-1:cds;Parent=Msa1428990-mRNA-1
tig0026425 CDS 24093 24147 24093 ID=Msa1428990-mRNA-1:cds;Parent=Msa1428990-mRNA-1
tig0026425 CDS 23829 23938 23829 ID=Msa1428990-mRNA-1:cds;Parent=Msa1428990-mRNA-1
tig0026425 CDS 23658 23723 23658 ID=Msa1428990-mRNA-1:cds;Parent=Msa1428990-mRNA-1
tig0026425 CDS 23472 23552 23472 ID=Msa1428990-mRNA-1:cds;Parent=Msa1428990-mRNA-1
tig0026425 CDS 23307 23389 23307 ID=Msa1428990-mRNA-1:cds;Parent=Msa1428990-mRNA-1
tig0026425 CDS 23135 23210 23135 ID=Msa1428990-mRNA-1:cds;Parent=Msa1428990-mRNA-1
tig0026425 CDS 22802 22920 22802 ID=Msa1428990-mRNA-1:cds;Parent=Msa1428990-mRNA-1
tig0026425 CDS 22605 22649 22605 ID=Msa1428990-mRNA-1:cds;Parent=Msa1428990-mRNA-1
tig0026425 CDS 22411 22437 22411 ID=Msa1428990-mRNA-1:cds;Parent=Msa1428990-mRNA-1
tig0026425 three_prime_UTR 21849 22410 21849 ID=Msa1428990-mRNA-1:three_prime_utr;Parent=Msa1428990-mRNA-1
Gene Sequence

>Msa1428990

ATGGCATCCATTTCATGGTTCAGCTGTCTACACATCCGACCAACTGCCACTGCCGGCGACAAAGGTTTATCATCTCCCATAACCGTGGAACATCATAAAACAAGACCACAAAATTTACTCTCATCCTCACAAGAAGGACTTGCGGTTAATAGAAGACAACTGATTCTTTACACATCCACCGCAGCAATTGCAGCTTCATCTACTGACTCAAATGCATTGGCACTCAATGATGTGACTGAGGATTTCAGTATCTACACTGATGATGAGAACAAGTTCAAGATAGATATTCCACAAGAGTGGCAAATTGGAACAGGAGAATCTGCAGGGTTCAAATCATTAACTGCTTTCTACCCAAAAGAGGAATCTAATTCCAATGTGAGCGTTGTGATCACAGGAGTGGGTCCAGATTTCACTAAGATGGAATCATTCGGCAAAGTTGAAGAATTTGCTGACACTCTGGTTAGTGGGTTGGACAGAAGCTGGAAAAAACCACCTGGTGTGGCTGCTAAACTCATAGATTGTAAATCATCTAAAGGATTTTATTTCATTGAGTATACACTGCAAAGTCCTGGTGAGGGTCGCAAACATCTATATTCAGCTATTGGGATGTTAACAAATGGCTGGTATAACAGACTGTATACAGTGACAGGACAGTATGGGGAAGAGGAAACAGACAAGTATGCTTCCAAAATTCAGAAGGCAGTTCGATCGTTTAAGTTCATATAA

Protein sequence

>Msa1428990

MASISWFSCLHIRPTATAGDKGLSSPITVEHHKTRPQNLLSSSQEGLAVNRRQLILYTSTAAIAASSTDSNALALNDVTEDFSIYTDDENKFKIDIPQEWQIGTGESAGFKSLTAFYPKEESNSNVSVVITGVGPDFTKMESFGKVEEFADTLVSGLDRSWKKPPGVAAKLIDCKSSKGFYFIEYTLQSPGEGRKHLYSAIGMLTNGWYNRLYTVTGQYGEEETDKYASKIQKAVRSFKFI*