AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1140940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140940 MtrunA17_Chr7g0241071 98.972 389 4 0 1 389 1 389 0.0 792
Msa1140940 MtrunA17_Chr2g0278581 51.562 320 137 2 71 389 11 313 3.73e-108 321
Msa1140940 MtrunA17_Chr6g0463901 51.250 320 138 2 71 389 11 313 4.16e-106 316
Msa1140940 MtrunA17_Chr4g0049821 44.340 318 154 7 73 389 70 365 2.58e-82 257
Msa1140940 MtrunA17_Chr3g0113101 29.008 262 151 9 125 383 115 344 2.90e-17 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140940 AT3G54050.2 81.501 373 61 3 21 389 27 395 0.0 616
Msa1140940 AT3G54050.1 81.501 373 61 3 21 389 27 395 0.0 616
Msa1140940 AT1G43670.1 50.000 320 142 3 71 389 11 313 2.19e-104 312
Msa1140940 AT5G64380.1 46.535 303 138 7 91 389 89 371 1.27e-79 251
Msa1140940 AT3G55800.1 29.967 307 158 15 89 383 90 351 3.91e-19 88.6

Find 93 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCTATGGTGGCATTTA+TGG 0.092703 7_4:+13530744 Msa1140940:CDS
CCAATATACCTTGCTGAATA+AGG 0.237180 7_4:-13530693 None:intergenic
ATGTAAACAGATTGCTTCTT+TGG 0.237903 7_4:+13528814 Msa1140940:CDS
GCTAATATTTCTAACCTTAC+TGG 0.275094 7_4:+13528845 Msa1140940:CDS
CCTTATTCAGCAAGGTATAT+TGG 0.303464 7_4:+13530693 Msa1140940:CDS
CATAGACGTGAGGGAGAATA+AGG 0.332492 7_4:-13528560 None:intergenic
GTTGTATTTGATCCACTTGA+TGG 0.344875 7_4:+13529549 Msa1140940:CDS
AGCTTATAACATTGACTAGT+TGG 0.352602 7_4:+13528720 Msa1140940:CDS
AGCAAGGTATATTGGTAGTT+TGG 0.355656 7_4:+13530701 Msa1140940:CDS
GCTGCTAGAAGGTTGCTTCC+TGG 0.357718 7_4:-13530441 None:intergenic
CATGGATGGATTGTGTTCTA+AGG 0.361431 7_4:-13528440 None:intergenic
AATGAGTTTCATTGTAGAAC+AGG 0.377561 7_4:+13530827 Msa1140940:CDS
AATCTCCAAATACCGAAATC+AGG 0.381783 7_4:+13530573 Msa1140940:CDS
TCTAACCTTACTGGTGTTCA+AGG 0.382052 7_4:+13528854 Msa1140940:CDS
GCGGTGGAAGAGAGTTATTC+AGG 0.384201 7_4:+13529516 Msa1140940:CDS
CTCAAGGAACCAGGTTCTAA+TGG 0.388835 7_4:+13530666 Msa1140940:CDS
AGAAAGCATGTGAGTGGCTC+TGG 0.395778 7_4:+13528635 Msa1140940:CDS
TTGAAGGAAAAGAGATTGTA+AGG 0.398053 7_4:-13528415 None:intergenic
TTCCATAGGACACTGCTCTA+TGG 0.398346 7_4:+13530732 Msa1140940:CDS
GTAATCTTTGTTCTAACAAT+CGG 0.407535 7_4:+13530489 Msa1140940:CDS
AAAATATATTCTTTCAATGA+AGG 0.413500 7_4:+13530597 Msa1140940:CDS
TCAGCAAGACACTCATCATT+GGG 0.420252 7_4:-13529627 None:intergenic
AGAGGATGTGCCGGTGGCGG+TGG 0.423979 7_4:+13529500 Msa1140940:CDS
GTCAGCAAGACACTCATCAT+TGG 0.424092 7_4:-13529628 None:intergenic
TTGTTGAAGCAAGAACAAAC+AGG 0.433134 7_4:+13528743 Msa1140940:CDS
GTAGAACAGGCTGGTGGAAA+AGG 0.450058 7_4:+13530840 Msa1140940:CDS
TGCAGTAACCAGCTGCTAGA+AGG 0.454204 7_4:-13530452 None:intergenic
TCAAATTGTTTGAGGTCAAG+TGG 0.463529 7_4:+13529450 Msa1140940:CDS
TTCACATTAGATCCAATGTA+TGG 0.463537 7_4:+13530528 Msa1140940:CDS
TTGAGGTCAAGTGGGAGGAC+AGG 0.467538 7_4:+13529459 Msa1140940:CDS
AGAGATTGTAAGGTTCGTAA+TGG 0.469758 7_4:-13528405 None:intergenic
CAAGGTGCAGTAAATATTCA+AGG 0.470496 7_4:+13528872 Msa1140940:CDS
ATTGTGTTCTAAGGTATTGA+AGG 0.476399 7_4:-13528431 None:intergenic
AGGTATTCTCAAATTGTTTG+AGG 0.481726 7_4:+13529442 Msa1140940:intron
AGAGACAAGAAAAGTAAGAA+TGG 0.483894 7_4:+13530774 Msa1140940:CDS
ATGAAGGGAATTACAAGTTG+TGG 0.487692 7_4:+13530613 Msa1140940:CDS
TGTTCTACAATGAAACTCAT+TGG 0.490655 7_4:-13530825 None:intergenic
CTAGAAGGTTGCTTCCTGGT+TGG 0.494022 7_4:-13530437 None:intergenic
AGGTATATTGGTAGTTTGGT+AGG 0.501227 7_4:+13530705 Msa1140940:CDS
TGAAGGGAATTACAAGTTGT+GGG 0.501292 7_4:+13530614 Msa1140940:CDS
GTTTGGTAGGTGATTTCCAT+AGG 0.501579 7_4:+13530718 Msa1140940:CDS
GATAATAGCATCAGAGGAAG+AGG 0.504250 7_4:+13529482 Msa1140940:CDS
AAAGTAAGAATGGAAAGCTT+AGG 0.504829 7_4:+13530784 Msa1140940:CDS
CTGCACCTTGAACACCAGTA+AGG 0.504963 7_4:-13528859 None:intergenic
GGAAGAGGATGTGCCGGTGG+CGG 0.506709 7_4:+13529497 Msa1140940:CDS
CACCATAGAGCAGTGTCCTA+TGG 0.514948 7_4:-13530734 None:intergenic
AAATATATTCTTTCAATGAA+GGG 0.518944 7_4:+13530598 Msa1140940:CDS
GGAAGCAACCTTCTAGCAGC+TGG 0.536054 7_4:+13530444 Msa1140940:CDS
CAAATTGTTTGAGGTCAAGT+GGG 0.545156 7_4:+13529451 Msa1140940:CDS
TAAGGTTTGCCATTAGAACC+TGG 0.547362 7_4:-13530675 None:intergenic
AAAACAAATTCTCCATACAT+TGG 0.548772 7_4:-13530540 None:intergenic
ATCTCCAAATACCGAAATCA+GGG 0.551752 7_4:+13530574 Msa1140940:CDS
TGAGGTCAAGTGGGAGGACA+GGG 0.559786 7_4:+13529460 Msa1140940:CDS
ACTTGATGTTGTCTCAAATG+AGG 0.561343 7_4:+13528910 Msa1140940:CDS
ATCAGAGGAAGAGGATGTGC+CGG 0.561455 7_4:+13529491 Msa1140940:CDS
GTCGAAGACACAAAGTTGGA+AGG 0.567894 7_4:-13528585 None:intergenic
AGTTTCATTGTAGAACAGGC+TGG 0.569307 7_4:+13530831 Msa1140940:CDS
GACAGGGATAATAGCATCAG+AGG 0.573560 7_4:+13529476 Msa1140940:CDS
TAACTCTCTTCCACCGCCAC+CGG 0.575436 7_4:-13529510 None:intergenic
GCTGGTGGAAAAGGTTCAGA+TGG 0.579726 7_4:+13530849 Msa1140940:CDS
ATTGTGAATGTGTGCCAACC+AGG 0.580359 7_4:+13530423 Msa1140940:CDS
CATTCGACACTTACTTCGGT+GGG 0.582856 7_4:-13530897 None:intergenic
TCATTCGACACTTACTTCGG+TGG 0.583933 7_4:-13530898 None:intergenic
ATCGATGATCTCAAGGAACC+AGG 0.584338 7_4:+13530657 Msa1140940:CDS
ATATTTGATGAACCATCAAG+TGG 0.584623 7_4:-13529561 None:intergenic
TGGTGAATGAGTTGCATGGA+TGG 0.585150 7_4:-13528454 None:intergenic
ATTGATGCTGCAGTGTCCAC+TGG 0.587571 7_4:+13529582 Msa1140940:CDS
GAAATACATCGATGATCTCA+AGG 0.591810 7_4:+13530650 Msa1140940:CDS
CTCTGGAGGAGTGAGATGCA+TGG 0.594547 7_4:+13528652 Msa1140940:CDS
AAGCATGTGAGTGGCTCTGG+AGG 0.594581 7_4:+13528638 Msa1140940:CDS
AAGGTGCAGTAAATATTCAA+GGG 0.595137 7_4:+13528873 Msa1140940:CDS
TTTGTTCTAACAATCGGCAA+AGG 0.598066 7_4:+13530495 Msa1140940:CDS
TGCAGTAAATATTCAAGGGG+AGG 0.598825 7_4:+13528877 Msa1140940:CDS
TCGTGTCGAAGACACAAAGT+TGG 0.599445 7_4:-13528589 None:intergenic
AAGTCATTCGACACTTACTT+CGG 0.606507 7_4:-13530901 None:intergenic
TTCATTGTAGAACAGGCTGG+TGG 0.611027 7_4:+13530834 Msa1140940:CDS
TTGCACTAGTGTGTTTCTAG+TGG 0.613499 7_4:-13528474 None:intergenic
TGTTGAAGCAAGAACAAACA+GGG 0.616718 7_4:+13528744 Msa1140940:CDS
CATAGGACACTGCTCTATGG+TGG 0.623379 7_4:+13530735 Msa1140940:CDS
TGGAAGGGACATAGACGTGA+GGG 0.625401 7_4:-13528569 None:intergenic
GGCTGTTGGTGAAGTAGCTG+CGG 0.625568 7_4:+13528673 Msa1140940:CDS
TCGAAGACACAAAGTTGGAA+GGG 0.631419 7_4:-13528584 None:intergenic
ATGGCAAACCTTATTCAGCA+AGG 0.633183 7_4:+13530685 Msa1140940:CDS
AGAGGAAGAGGATGTGCCGG+TGG 0.636345 7_4:+13529494 Msa1140940:CDS
TCAAGAAGAAAGCATGTGAG+TGG 0.640509 7_4:+13528629 Msa1140940:CDS
ATTGTTTGAGGTCAAGTGGG+AGG 0.641340 7_4:+13529454 Msa1140940:CDS
GGAGTGAGATGCATGGCTGT+TGG 0.653986 7_4:+13528659 Msa1140940:CDS
CTAGTGGTGAATGAGTTGCA+TGG 0.667648 7_4:-13528458 None:intergenic
AGGTGCAGTAAATATTCAAG+GGG 0.670231 7_4:+13528874 Msa1140940:CDS
TTGGAAGGGACATAGACGTG+AGG 0.678821 7_4:-13528570 None:intergenic
CAGCAAGACACTCATCATTG+GGG 0.711192 7_4:-13529626 None:intergenic
GATGAGTGTCTTGCTGACGT+TGG 0.721138 7_4:+13529633 Msa1140940:CDS
GTTGAAGCAAGAACAAACAG+GGG 0.727918 7_4:+13528745 Msa1140940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAATTAGTTTTGAACT+AGG + chr7_4:13528947-13528966 Msa1140940:intron 15.0%
!!! ATTTAATTAGTTTTGAACTA+GGG + chr7_4:13528948-13528967 Msa1140940:intron 15.0%
!!! TGTTTTATATTTTTTTGTTC+AGG + chr7_4:13529422-13529441 Msa1140940:intron 15.0%
!! NNNNNNACAAAAAGTAAGAA+CGG - chr7_4:13530149-13530168 None:intergenic 15.0%
!!! TTAAACAGTGTTTTAAAAAT+CGG - chr7_4:13530356-13530375 None:intergenic 15.0%
!! AAAATATATTCTTTCAATGA+AGG + chr7_4:13530597-13530616 Msa1140940:CDS 15.0%
!! AAATATATTCTTTCAATGAA+GGG + chr7_4:13530598-13530617 Msa1140940:CDS 15.0%
!! AATATCAATTATTTCAACCT+CGG - chr7_4:13529043-13529062 None:intergenic 20.0%
!!! TTAAACTTAAAGGTTTTCTT+AGG + chr7_4:13529371-13529390 Msa1140940:intron 20.0%
!!! GATTGTTTTCATTTATGATT+AGG + chr7_4:13529699-13529718 Msa1140940:intron 20.0%
!! TTATAGTAGCAAATAAACAT+AGG + chr7_4:13530036-13530055 Msa1140940:intron 20.0%
!! NNNNNACAAAAAGTAAGAAC+GGG - chr7_4:13530148-13530167 None:intergenic 20.0%
! AGTGCAAAATTCAACAAAAA+TGG + chr7_4:13528490-13528509 Msa1140940:exon 25.0%
!!! TGTTTTGAATAGTATTTCGT+TGG + chr7_4:13528790-13528809 Msa1140940:CDS 25.0%
! ATTATCTTCGGTGATAATTT+AGG + chr7_4:13529166-13529185 Msa1140940:intron 25.0%
! ATGTAGGTACTTAAACTTAA+AGG + chr7_4:13529361-13529380 Msa1140940:intron 25.0%
! AGTAACTTAGAAACCTAATT+AGG + chr7_4:13529916-13529935 Msa1140940:intron 25.0%
! TAATTGAACCAATCCTAATT+AGG - chr7_4:13529932-13529951 None:intergenic 25.0%
! CTACTATAAGTTTCAAATGA+AGG - chr7_4:13530025-13530044 None:intergenic 25.0%
! GTAATCTTTGTTCTAACAAT+CGG + chr7_4:13530489-13530508 Msa1140940:CDS 25.0%
! AAAACAAATTCTCCATACAT+TGG - chr7_4:13530543-13530562 None:intergenic 25.0%
!! GAATATATTTTCCCTGATTT+CGG - chr7_4:13530588-13530607 None:intergenic 25.0%
TTGAAGGAAAAGAGATTGTA+AGG - chr7_4:13528418-13528437 None:intergenic 30.0%
!! ATTGTGTTCTAAGGTATTGA+AGG - chr7_4:13528434-13528453 None:intergenic 30.0%
TTCAACAAAAATGGTTGCAA+TGG + chr7_4:13528499-13528518 Msa1140940:exon 30.0%
! AGCTTATAACATTGACTAGT+TGG + chr7_4:13528720-13528739 Msa1140940:CDS 30.0%
ATGTAAACAGATTGCTTCTT+TGG + chr7_4:13528814-13528833 Msa1140940:CDS 30.0%
! GCTAATATTTCTAACCTTAC+TGG + chr7_4:13528845-13528864 Msa1140940:CDS 30.0%
AAGGTGCAGTAAATATTCAA+GGG + chr7_4:13528873-13528892 Msa1140940:CDS 30.0%
TTGAGACCTAAAAAGTTTCA+TGG + chr7_4:13529017-13529036 Msa1140940:intron 30.0%
CAGAGAATCACAATTAAATG+CGG + chr7_4:13529064-13529083 Msa1140940:intron 30.0%
TAGCTTCTTCAAAAACAATG+CGG + chr7_4:13529199-13529218 Msa1140940:intron 30.0%
ACATTTATGACCAAGTATGT+AGG + chr7_4:13529345-13529364 Msa1140940:intron 30.0%
AGTTTAAGTACCTACATACT+TGG - chr7_4:13529358-13529377 None:intergenic 30.0%
AGGTATTCTCAAATTGTTTG+AGG + chr7_4:13529442-13529461 Msa1140940:intron 30.0%
ATATTTGATGAACCATCAAG+TGG - chr7_4:13529564-13529583 None:intergenic 30.0%
TTATGATTAGGAATCGAACT+CGG + chr7_4:13529711-13529730 Msa1140940:intron 30.0%
ATAAGTGTGAATGATTCAAG+TGG + chr7_4:13529813-13529832 Msa1140940:intron 30.0%
CTTAGAAACCTAATTAGGAT+TGG + chr7_4:13529921-13529940 Msa1140940:intron 30.0%
! AACCAGATTAAGGTATCATT+GGG - chr7_4:13530097-13530116 None:intergenic 30.0%
! TAACCAGATTAAGGTATCAT+TGG - chr7_4:13530098-13530117 None:intergenic 30.0%
TACATATGTAAATTGCAGCT+TGG + chr7_4:13530381-13530400 Msa1140940:intron 30.0%
TTCACATTAGATCCAATGTA+TGG + chr7_4:13530528-13530547 Msa1140940:CDS 30.0%
!! TCTTACTTTTCTTGTCTCTA+GGG - chr7_4:13530773-13530792 None:intergenic 30.0%
!! TTCTTACTTTTCTTGTCTCT+AGG - chr7_4:13530774-13530793 None:intergenic 30.0%
AGAGACAAGAAAAGTAAGAA+TGG + chr7_4:13530774-13530793 Msa1140940:CDS 30.0%
AAAGTAAGAATGGAAAGCTT+AGG + chr7_4:13530784-13530803 Msa1140940:CDS 30.0%
TGTTCTACAATGAAACTCAT+TGG - chr7_4:13530828-13530847 None:intergenic 30.0%
AATGAGTTTCATTGTAGAAC+AGG + chr7_4:13530827-13530846 Msa1140940:CDS 30.0%
AGAGATTGTAAGGTTCGTAA+TGG - chr7_4:13528408-13528427 None:intergenic 35.0%
TTGTTGAAGCAAGAACAAAC+AGG + chr7_4:13528743-13528762 Msa1140940:CDS 35.0%
TGTTGAAGCAAGAACAAACA+GGG + chr7_4:13528744-13528763 Msa1140940:CDS 35.0%
CAAGGTGCAGTAAATATTCA+AGG + chr7_4:13528872-13528891 Msa1140940:CDS 35.0%
AGGTGCAGTAAATATTCAAG+GGG + chr7_4:13528874-13528893 Msa1140940:CDS 35.0%
ACTTGATGTTGTCTCAAATG+AGG + chr7_4:13528910-13528929 Msa1140940:CDS 35.0%
ATCTTCGGTGATAATTTAGG+TGG + chr7_4:13529169-13529188 Msa1140940:intron 35.0%
TCTTCGGTGATAATTTAGGT+GGG + chr7_4:13529170-13529189 Msa1140940:intron 35.0%
ATTCAAAGCGACTCTAATTG+AGG - chr7_4:13529234-13529253 None:intergenic 35.0%
! TGCTAAAGGAGTGTATTAGA+AGG + chr7_4:13529308-13529327 Msa1140940:intron 35.0%
! GCTAAAGGAGTGTATTAGAA+GGG + chr7_4:13529309-13529328 Msa1140940:intron 35.0%
GTATTAGAAGGGTTTACTCT+TGG + chr7_4:13529320-13529339 Msa1140940:intron 35.0%
! TCAAATTGTTTGAGGTCAAG+TGG + chr7_4:13529450-13529469 Msa1140940:CDS 35.0%
! CAAATTGTTTGAGGTCAAGT+GGG + chr7_4:13529451-13529470 Msa1140940:CDS 35.0%
GTTGTATTTGATCCACTTGA+TGG + chr7_4:13529549-13529568 Msa1140940:CDS 35.0%
ATCCCAATGATACCTTAATC+TGG + chr7_4:13530092-13530111 Msa1140940:intron 35.0%
ACCTTAATCTGGTTAAACAG+TGG + chr7_4:13530103-13530122 Msa1140940:intron 35.0%
ACCACTGTTTAACCAGATTA+AGG - chr7_4:13530107-13530126 None:intergenic 35.0%
!!! CAGTGTTTTAAAAATCGGAC+TGG - chr7_4:13530351-13530370 None:intergenic 35.0%
TTTGTTCTAACAATCGGCAA+AGG + chr7_4:13530495-13530514 Msa1140940:CDS 35.0%
AATCTCCAAATACCGAAATC+AGG + chr7_4:13530573-13530592 Msa1140940:CDS 35.0%
ATCTCCAAATACCGAAATCA+GGG + chr7_4:13530574-13530593 Msa1140940:CDS 35.0%
! TTTTCCCTGATTTCGGTATT+TGG - chr7_4:13530581-13530600 None:intergenic 35.0%
ATGAAGGGAATTACAAGTTG+TGG + chr7_4:13530613-13530632 Msa1140940:CDS 35.0%
TGAAGGGAATTACAAGTTGT+GGG + chr7_4:13530614-13530633 Msa1140940:CDS 35.0%
GAAATACATCGATGATCTCA+AGG + chr7_4:13530650-13530669 Msa1140940:CDS 35.0%
CCAATATACCTTGCTGAATA+AGG - chr7_4:13530696-13530715 None:intergenic 35.0%
CCTTATTCAGCAAGGTATAT+TGG + chr7_4:13530693-13530712 Msa1140940:CDS 35.0%
! AGCAAGGTATATTGGTAGTT+TGG + chr7_4:13530701-13530720 Msa1140940:CDS 35.0%
! AGGTATATTGGTAGTTTGGT+AGG + chr7_4:13530705-13530724 Msa1140940:CDS 35.0%
!! CATGGATGGATTGTGTTCTA+AGG - chr7_4:13528443-13528462 None:intergenic 40.0%
!! TTGCACTAGTGTGTTTCTAG+TGG - chr7_4:13528477-13528496 None:intergenic 40.0%
TCGAAGACACAAAGTTGGAA+GGG - chr7_4:13528587-13528606 None:intergenic 40.0%
! TCAAGAAGAAAGCATGTGAG+TGG + chr7_4:13528629-13528648 Msa1140940:CDS 40.0%
GTTGAAGCAAGAACAAACAG+GGG + chr7_4:13528745-13528764 Msa1140940:CDS 40.0%
TCTAACCTTACTGGTGTTCA+AGG + chr7_4:13528854-13528873 Msa1140940:CDS 40.0%
TGCAGTAAATATTCAAGGGG+AGG + chr7_4:13528877-13528896 Msa1140940:CDS 40.0%
GACCTCTTTCTGTTAGAAAC+CGG + chr7_4:13528990-13529009 Msa1140940:intron 40.0%
!!! CTTTTTAGGTCTCAATCCTC+CGG - chr7_4:13529012-13529031 None:intergenic 40.0%
GGCTAATGTTAAACCCACTT+GGG + chr7_4:13529085-13529104 Msa1140940:intron 40.0%
AATGTTAAACCCACTTGGGT+TGG + chr7_4:13529089-13529108 Msa1140940:intron 40.0%
!! TTGGCCTACTGTATTGGTTA+GGG + chr7_4:13529108-13529127 Msa1140940:intron 40.0%
GTGTCAGGTTCGATTATCTT+CGG + chr7_4:13529154-13529173 Msa1140940:intron 40.0%
TATTATCCGCAGTCGTGATT+TGG - chr7_4:13529288-13529307 None:intergenic 40.0%
GACTGCGGATAATATGCTAA+AGG + chr7_4:13529294-13529313 Msa1140940:intron 40.0%
GATAATAGCATCAGAGGAAG+AGG + chr7_4:13529482-13529501 Msa1140940:CDS 40.0%
!!! TGTCCACTGGTTCGATTTTT+GGG + chr7_4:13529595-13529614 Msa1140940:CDS 40.0%
AATCCCAAAAATCGAACCAG+TGG - chr7_4:13529601-13529620 None:intergenic 40.0%
TCAGCAAGACACTCATCATT+GGG - chr7_4:13529630-13529649 None:intergenic 40.0%
TCCAAGCATTCACTTACTGT+GGG - chr7_4:13529675-13529694 None:intergenic 40.0%
TTCCAAGCATTCACTTACTG+TGG - chr7_4:13529676-13529695 None:intergenic 40.0%
AGGAATCGAACTCGGTAATT+TGG + chr7_4:13529719-13529738 Msa1140940:intron 40.0%
GGAATCGAACTCGGTAATTT+GGG + chr7_4:13529720-13529739 Msa1140940:intron 40.0%
GAATCGAACTCGGTAATTTG+GGG + chr7_4:13529721-13529740 Msa1140940:intron 40.0%
TGAACCGATTAAATCGCGAT+CGG + chr7_4:13530304-13530323 Msa1140940:intron 40.0%
CTTTCCGATCGCGATTTAAT+CGG - chr7_4:13530311-13530330 None:intergenic 40.0%
! AATCGGACTGGAGATCAAAT+TGG - chr7_4:13530339-13530358 None:intergenic 40.0%
TAAGGTTTGCCATTAGAACC+TGG - chr7_4:13530678-13530697 None:intergenic 40.0%
ATGGCAAACCTTATTCAGCA+AGG + chr7_4:13530685-13530704 Msa1140940:CDS 40.0%
GTTTGGTAGGTGATTTCCAT+AGG + chr7_4:13530718-13530737 Msa1140940:CDS 40.0%
AGTTTCATTGTAGAACAGGC+TGG + chr7_4:13530831-13530850 Msa1140940:CDS 40.0%
TGGTGAATGAGTTGCATGGA+TGG - chr7_4:13528457-13528476 None:intergenic 45.0%
CTAGTGGTGAATGAGTTGCA+TGG - chr7_4:13528461-13528480 None:intergenic 45.0%
CATAGACGTGAGGGAGAATA+AGG - chr7_4:13528563-13528582 None:intergenic 45.0%
GTCGAAGACACAAAGTTGGA+AGG - chr7_4:13528588-13528607 None:intergenic 45.0%
TCGTGTCGAAGACACAAAGT+TGG - chr7_4:13528592-13528611 None:intergenic 45.0%
TTTGAACTAGGGTCGAACTC+TGG + chr7_4:13528959-13528978 Msa1140940:intron 45.0%
CTCCGGTTTCTAACAGAAAG+AGG - chr7_4:13528995-13529014 None:intergenic 45.0%
CTCTTTCTGTTAGAAACCGG+AGG + chr7_4:13528993-13529012 Msa1140940:intron 45.0%
! CCTCGGCCATGAAACTTTTT+AGG - chr7_4:13529026-13529045 None:intergenic 45.0%
CCTAAAAAGTTTCATGGCCG+AGG + chr7_4:13529023-13529042 Msa1140940:intron 45.0%
CGGCTAATGTTAAACCCACT+TGG + chr7_4:13529084-13529103 Msa1140940:intron 45.0%
!! GTTGGCCTACTGTATTGGTT+AGG + chr7_4:13529107-13529126 Msa1140940:intron 45.0%
AGGTCCCTAACCAATACAGT+AGG - chr7_4:13529115-13529134 None:intergenic 45.0%
!! TACTGTATTGGTTAGGGACC+TGG + chr7_4:13529114-13529133 Msa1140940:intron 45.0%
!! ACTGTATTGGTTAGGGACCT+GGG + chr7_4:13529115-13529134 Msa1140940:intron 45.0%
GATAATCGAACCTGACACCT+AGG - chr7_4:13529152-13529171 None:intergenic 45.0%
TGCAATCCAAATCACGACTG+CGG + chr7_4:13529279-13529298 Msa1140940:intron 45.0%
! ATTGTTTGAGGTCAAGTGGG+AGG + chr7_4:13529454-13529473 Msa1140940:CDS 45.0%
GACAGGGATAATAGCATCAG+AGG + chr7_4:13529476-13529495 Msa1140940:CDS 45.0%
!!! GTGTCCACTGGTTCGATTTT+TGG + chr7_4:13529594-13529613 Msa1140940:CDS 45.0%
CAGCAAGACACTCATCATTG+GGG - chr7_4:13529629-13529648 None:intergenic 45.0%
GTCAGCAAGACACTCATCAT+TGG - chr7_4:13529631-13529650 None:intergenic 45.0%
CCAAGCATTCACTTACTGTG+GGG - chr7_4:13529674-13529693 None:intergenic 45.0%
CATTGGGATCAAACCAACTG+AGG - chr7_4:13530081-13530100 None:intergenic 45.0%
ATTGTGAATGTGTGCCAACC+AGG + chr7_4:13530423-13530442 Msa1140940:CDS 45.0%
ATCGATGATCTCAAGGAACC+AGG + chr7_4:13530657-13530676 Msa1140940:CDS 45.0%
! CTCAAGGAACCAGGTTCTAA+TGG + chr7_4:13530666-13530685 Msa1140940:CDS 45.0%
TTCCATAGGACACTGCTCTA+TGG + chr7_4:13530732-13530751 Msa1140940:CDS 45.0%
CTGCTCTATGGTGGCATTTA+TGG + chr7_4:13530744-13530763 Msa1140940:CDS 45.0%
TTCATTGTAGAACAGGCTGG+TGG + chr7_4:13530834-13530853 Msa1140940:CDS 45.0%
CATTCGACACTTACTTCGGT+GGG - chr7_4:13530900-13530919 None:intergenic 45.0%
TCATTCGACACTTACTTCGG+TGG - chr7_4:13530901-13530920 None:intergenic 45.0%
TGGAAGGGACATAGACGTGA+GGG - chr7_4:13528572-13528591 None:intergenic 50.0%
TTGGAAGGGACATAGACGTG+AGG - chr7_4:13528573-13528592 None:intergenic 50.0%
! AGAAAGCATGTGAGTGGCTC+TGG + chr7_4:13528635-13528654 Msa1140940:CDS 50.0%
CTGCACCTTGAACACCAGTA+AGG - chr7_4:13528862-13528881 None:intergenic 50.0%
TACAGTAGGCCAACCCAAGT+GGG - chr7_4:13529101-13529120 None:intergenic 50.0%
ATACAGTAGGCCAACCCAAG+TGG - chr7_4:13529102-13529121 None:intergenic 50.0%
!! CTTGGGTTGGCCTACTGTAT+TGG + chr7_4:13529102-13529121 Msa1140940:intron 50.0%
ATCAGAGGAAGAGGATGTGC+CGG + chr7_4:13529491-13529510 Msa1140940:CDS 50.0%
GCGGTGGAAGAGAGTTATTC+AGG + chr7_4:13529516-13529535 Msa1140940:CDS 50.0%
ATTGATGCTGCAGTGTCCAC+TGG + chr7_4:13529582-13529601 Msa1140940:CDS 50.0%
GATGAGTGTCTTGCTGACGT+TGG + chr7_4:13529633-13529652 Msa1140940:CDS 50.0%
CCCCACAGTAAGTGAATGCT+TGG + chr7_4:13529671-13529690 Msa1140940:intron 50.0%
! CGAACTCGGTAATTTGGGGT+TGG + chr7_4:13529725-13529744 Msa1140940:intron 50.0%
GTAAACGAGCCTACGTCATC+AGG - chr7_4:13529751-13529770 None:intergenic 50.0%
CTGAGGAACTTGTCTGCTCT+CGG - chr7_4:13530064-13530083 None:intergenic 50.0%
GAGCAGACAAGTTCCTCAGT+TGG + chr7_4:13530065-13530084 Msa1140940:intron 50.0%
CTAGAAGGTTGCTTCCTGGT+TGG - chr7_4:13530440-13530459 None:intergenic 50.0%
TGCAGTAACCAGCTGCTAGA+AGG - chr7_4:13530455-13530474 None:intergenic 50.0%
CACCATAGAGCAGTGTCCTA+TGG - chr7_4:13530737-13530756 None:intergenic 50.0%
CATAGGACACTGCTCTATGG+TGG + chr7_4:13530735-13530754 Msa1140940:CDS 50.0%
GTAGAACAGGCTGGTGGAAA+AGG + chr7_4:13530840-13530859 Msa1140940:CDS 50.0%
GCTGGTGGAAAAGGTTCAGA+TGG + chr7_4:13530849-13530868 Msa1140940:CDS 50.0%
!! AAGCATGTGAGTGGCTCTGG+AGG + chr7_4:13528638-13528657 Msa1140940:CDS 55.0%
! CTCTGGAGGAGTGAGATGCA+TGG + chr7_4:13528652-13528671 Msa1140940:CDS 55.0%
GGAGTGAGATGCATGGCTGT+TGG + chr7_4:13528659-13528678 Msa1140940:CDS 55.0%
! GGCTGTTGGTGAAGTAGCTG+CGG + chr7_4:13528673-13528692 Msa1140940:CDS 55.0%
! GTGTGCTACTCCTAGGTGTC+AGG + chr7_4:13529139-13529158 Msa1140940:intron 55.0%
TTGAGGTCAAGTGGGAGGAC+AGG + chr7_4:13529459-13529478 Msa1140940:CDS 55.0%
TGAGGTCAAGTGGGAGGACA+GGG + chr7_4:13529460-13529479 Msa1140940:CDS 55.0%
TAACTCTCTTCCACCGCCAC+CGG - chr7_4:13529513-13529532 None:intergenic 55.0%
GCTGCTAGAAGGTTGCTTCC+TGG - chr7_4:13530444-13530463 None:intergenic 55.0%
GGAAGCAACCTTCTAGCAGC+TGG + chr7_4:13530444-13530463 Msa1140940:CDS 55.0%
CCTAGGAGTAGCACACTCCC+AGG - chr7_4:13529135-13529154 None:intergenic 60.0%
! CCTGGGAGTGTGCTACTCCT+AGG + chr7_4:13529132-13529151 Msa1140940:intron 60.0%
AGAGGAAGAGGATGTGCCGG+TGG + chr7_4:13529494-13529513 Msa1140940:CDS 60.0%
!! TGGGGTTGGCCTGATGACGT+AGG + chr7_4:13529739-13529758 Msa1140940:intron 60.0%
! GGAAGAGGATGTGCCGGTGG+CGG + chr7_4:13529497-13529516 Msa1140940:CDS 65.0%
! AGAGGATGTGCCGGTGGCGG+TGG + chr7_4:13529500-13529519 Msa1140940:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 13528401 13530920 13528401 ID=Msa1140940;Name=Msa1140940
chr7_4 mRNA 13528401 13530920 13528401 ID=Msa1140940-mRNA-1;Parent=Msa1140940;Name=Msa1140940-mRNA-1;_AED=0.11;_eAED=0.11;_QI=108|1|0.66|1|1|1|3|0|392
chr7_4 exon 13528401 13528931 13528401 ID=Msa1140940-mRNA-1:exon:3195;Parent=Msa1140940-mRNA-1
chr7_4 exon 13529444 13529677 13529444 ID=Msa1140940-mRNA-1:exon:3196;Parent=Msa1140940-mRNA-1
chr7_4 exon 13530399 13530920 13530399 ID=Msa1140940-mRNA-1:exon:3197;Parent=Msa1140940-mRNA-1
chr7_4 five_prime_UTR 13528401 13528508 13528401 ID=Msa1140940-mRNA-1:five_prime_utr;Parent=Msa1140940-mRNA-1
chr7_4 CDS 13528509 13528931 13528509 ID=Msa1140940-mRNA-1:cds;Parent=Msa1140940-mRNA-1
chr7_4 CDS 13529444 13529677 13529444 ID=Msa1140940-mRNA-1:cds;Parent=Msa1140940-mRNA-1
chr7_4 CDS 13530399 13530920 13530399 ID=Msa1140940-mRNA-1:cds;Parent=Msa1140940-mRNA-1
Gene Sequence

>Msa1140940

ATGGTTGCAATGGCAGCAGCAACAGCATCATCACAATTGATATTCTCAAAACCTTATTCTCCCTCACGTCTATGTCCCTTCCAACTTTGTGTCTTCGACACGAAATCTGTGTTATCAAGTTCAAGAAGAAAGCATGTGAGTGGCTCTGGAGGAGTGAGATGCATGGCTGTTGGTGAAGTAGCTGCGGAGACGAAGAAAAGAAGTAGTTATGAGCTTATAACATTGACTAGTTGGTTGTTGAAGCAAGAACAAACAGGGGTTATTGATGCTGAACTTACTATTGTTTTGAATAGTATTTCGTTGGCATGTAAACAGATTGCTTCTTTGGTTCAAAGAGCTAATATTTCTAACCTTACTGGTGTTCAAGGTGCAGTAAATATTCAAGGGGAGGATCAGAAAAAACTTGATGTTGTCTCAAATGAGGTATTCTCAAATTGTTTGAGGTCAAGTGGGAGGACAGGGATAATAGCATCAGAGGAAGAGGATGTGCCGGTGGCGGTGGAAGAGAGTTATTCAGGAAACTACATTGTTGTATTTGATCCACTTGATGGTTCATCAAATATTGATGCTGCAGTGTCCACTGGTTCGATTTTTGGGATTTACAGCCCCAATGATGAGTGTCTTGCTGACGTTGGTGATGAGTCTGATGACCCCACACTTGGCACAGAAGAACAAAGATGCATTGTGAATGTGTGCCAACCAGGAAGCAACCTTCTAGCAGCTGGTTACTGCATGTATTCTAGCTCAGTAATCTTTGTTCTAACAATCGGCAAAGGAGTGTTTGTATTCACATTAGATCCAATGTATGGAGAATTTGTTTTGACTCAAGAAAATCTCCAAATACCGAAATCAGGGAAAATATATTCTTTCAATGAAGGGAATTACAAGTTGTGGGATGACAACTTGAAGAAATACATCGATGATCTCAAGGAACCAGGTTCTAATGGCAAACCTTATTCAGCAAGGTATATTGGTAGTTTGGTAGGTGATTTCCATAGGACACTGCTCTATGGTGGCATTTATGGTTACCCTAGAGACAAGAAAAGTAAGAATGGAAAGCTTAGGCTTTTATATGAGTGTGCTCCAATGAGTTTCATTGTAGAACAGGCTGGTGGAAAAGGTTCAGATGGTCATCAAAGAGTACTTGACATTCAACCCACCGAAGTAAGTGTCGAATGA

Protein sequence

>Msa1140940

MVAMAAATASSQLIFSKPYSPSRLCPFQLCVFDTKSVLSSSRRKHVSGSGGVRCMAVGEVAAETKKRSSYELITLTSWLLKQEQTGVIDAELTIVLNSISLACKQIASLVQRANISNLTGVQGAVNIQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADVGDESDDPTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPMYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDDNLKKYIDDLKEPGSNGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEVSVE*