AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356500 MtrunA17_Chr6g0449011 93.514 185 12 0 1 185 1 185 1.30e-130 363
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356500 AT1G78995.1 71.277 94 19 2 92 185 74 159 6.15e-39 131

Find 44 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAGTTTATATGCTTAAT+AGG 0.173323 tig0015629:-7314 None:intergenic
CTATTGATATTATTAACTTT+AGG 0.227308 tig0015629:+9497 Msa1356500:three_prime_UTR
TATTGATATTATTAACTTTA+GGG 0.285324 tig0015629:+9498 Msa1356500:three_prime_UTR
CTTTAGCAATAAAATTTAGA+AGG 0.340200 tig0015629:+7183 Msa1356500:five_prime_UTR
TAAAGTTTATATGCTTAATA+GGG 0.350274 tig0015629:-7313 None:intergenic
CACTCGCCTGATAGAGTTTG+AGG 0.359156 tig0015629:-7660 None:intergenic
AACATACCTCAAACTCTATC+AGG 0.361189 tig0015629:+7654 Msa1356500:CDS
TCAAGTTTATTGCCACACTA+TGG 0.388806 tig0015629:+7384 Msa1356500:CDS
GATTCTGCTTTCCTTGACTT+TGG 0.395114 tig0015629:-7723 None:intergenic
ATGCCATTCCTACATGTTGG+AGG 0.449830 tig0015629:+7414 Msa1356500:CDS
AGAGGTGGTGATGGCTCTCC+TGG 0.450651 tig0015629:+7777 Msa1356500:CDS
AACTTTAAATGTATGAATGA+AGG 0.458604 tig0015629:+7329 Msa1356500:five_prime_UTR
TGACATTACTCTCACTCTGC+AGG 0.459007 tig0015629:-7512 None:intergenic
AGTGGTCCTATGATGTTAAG+AGG 0.471184 tig0015629:-7807 None:intergenic
AGAAAGATAATGTTAATTTG+TGG 0.472379 tig0015629:+7360 Msa1356500:exon
GCAATAAAATTTAGAAGGCA+AGG 0.474839 tig0015629:+7188 Msa1356500:five_prime_UTR
GGTGATGGCTCTCCTGGTGA+AGG 0.481595 tig0015629:+7783 Msa1356500:CDS
GAAGGCCCTCTTAACATCAT+AGG 0.486069 tig0015629:+7801 Msa1356500:CDS
TACCACAGCAGTTGTGAGAA+AGG 0.498036 tig0015629:-7571 None:intergenic
GATTGTTGAAGTGGTGGTTG+TGG 0.539051 tig0015629:+7289 Msa1356500:five_prime_UTR
ACTTTAAATGTATGAATGAA+GGG 0.541386 tig0015629:+7330 Msa1356500:five_prime_UTR
GACATTACTCTCACTCTGCA+GGG 0.543231 tig0015629:-7511 None:intergenic
ACTTGCATCAGAGGTGGTGA+TGG 0.545114 tig0015629:+7768 Msa1356500:CDS
TCCATGCCATTCCTACATGT+TGG 0.551983 tig0015629:+7411 Msa1356500:CDS
ATGTTAAGAGGGCCTTCACC+AGG 0.552852 tig0015629:-7795 None:intergenic
ACTTCAACTAACTATCAAGT+TGG 0.563862 tig0015629:-9673 None:intergenic
ACTAGTACGAAGTTTATCAC+TGG 0.571255 tig0015629:+7131 None:intergenic
ACAGTCACAGATTGTTGAAG+TGG 0.578388 tig0015629:+7280 Msa1356500:five_prime_UTR
TGTGTCACTACTTGCATCAG+AGG 0.586797 tig0015629:+7759 Msa1356500:CDS
AAACCTCCAACATGTAGGAA+TGG 0.587280 tig0015629:-7417 None:intergenic
TCAATAGCAGTATAAACTCA+AGG 0.591268 tig0015629:-9481 None:intergenic
TTTGAAAACCTCCAACATGT+AGG 0.601658 tig0015629:-7422 None:intergenic
TCCAACATGTAGGAATGGCA+TGG 0.608402 tig0015629:-7412 None:intergenic
TACCTTTCTCACAACTGCTG+TGG 0.615363 tig0015629:+7569 Msa1356500:CDS
AGGAAAGCAGAATCATGCAC+AGG 0.616667 tig0015629:+7732 Msa1356500:CDS
AAATACAGAAACCAAAGTCA+AGG 0.616765 tig0015629:+7712 Msa1356500:CDS
GTGGTCCTATGATGTTAAGA+GGG 0.627783 tig0015629:-7806 None:intergenic
TGCTCACATAAACATTACAA+AGG 0.637572 tig0015629:-9541 None:intergenic
GTCACAGATTGTTGAAGTGG+TGG 0.642771 tig0015629:+7283 Msa1356500:five_prime_UTR
CCTTGTTTGAAAACAACGAG+TGG 0.655728 tig0015629:-7825 None:intergenic
ATAAAATTTAGAAGGCAAGG+AGG 0.658672 tig0015629:+7191 Msa1356500:five_prime_UTR
GGCATGGAGGATCCATAGTG+TGG 0.671482 tig0015629:-7396 None:intergenic
GTCACTACTTGCATCAGAGG+TGG 0.688742 tig0015629:+7762 Msa1356500:CDS
AACATGTAGGAATGGCATGG+AGG 0.710592 tig0015629:-7409 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAATGAATTAAAAAAA+GGG + tig0015629:9135-9154 Msa1356500:intron 10.0%
!! TATTGATATTATTAACTTTA+GGG + tig0015629:9498-9517 Msa1356500:three_prime_UTR 10.0%
!!! AATTTTATTCTTTCAAATTT+CGG + tig0015629:9615-9634 Msa1356500:three_prime_UTR 10.0%
!! TAAAGTTTATATGCTTAATA+GGG - tig0015629:7316-7335 None:intergenic 15.0%
!! TTAAAGTTTATATGCTTAAT+AGG - tig0015629:7317-7336 None:intergenic 15.0%
!! TAAATTATAGCAAAAAGTTA+AGG - tig0015629:7883-7902 None:intergenic 15.0%
!!! CTTTTTTTAATTCATTAATC+TGG - tig0015629:9136-9155 None:intergenic 15.0%
!! CAGATTAATGAATTAAAAAA+AGG + tig0015629:9134-9153 Msa1356500:intron 15.0%
!!! AATATGAATTGCTTATTTTT+TGG + tig0015629:9295-9314 Msa1356500:intron 15.0%
!! CTATTGATATTATTAACTTT+AGG + tig0015629:9497-9516 Msa1356500:three_prime_UTR 15.0%
!!! AAATTTTATTGCTAAAGCAT+TGG - tig0015629:7180-7199 None:intergenic 20.0%
!! CTTTAGCAATAAAATTTAGA+AGG + tig0015629:7183-7202 Msa1356500:five_prime_UTR 20.0%
!! AACTTTAAATGTATGAATGA+AGG + tig0015629:7329-7348 Msa1356500:five_prime_UTR 20.0%
!! ACTTTAAATGTATGAATGAA+GGG + tig0015629:7330-7349 Msa1356500:five_prime_UTR 20.0%
!!! AGAAAGATAATGTTAATTTG+TGG + tig0015629:7360-7379 Msa1356500:exon 20.0%
!!! ACAAAGTTATTTTTCAAGAA+GGG - tig0015629:8140-8159 None:intergenic 20.0%
!!! ATGGAAAAAGTATTTCATTT+TGG - tig0015629:8807-8826 None:intergenic 20.0%
!! TTTAAATATGAATTTGAGCT+GGG - tig0015629:8927-8946 None:intergenic 20.0%
!! ATTTAAATATGAATTTGAGC+TGG - tig0015629:8928-8947 None:intergenic 20.0%
!! AGCTCAAATTCATATTTAAA+TGG + tig0015629:8927-8946 Msa1356500:intron 20.0%
!!! AGTTTTAAAGAAAACGATAA+GGG - tig0015629:9051-9070 None:intergenic 20.0%
!! TCAATTGAAAGATAATAACT+TGG - tig0015629:9381-9400 None:intergenic 20.0%
!!! ATTTATTTTGAAGTTCCAAC+TGG + tig0015629:7984-8003 Msa1356500:intron 25.0%
! TCAAATTAAAATGGTGTCTT+GGG - tig0015629:8091-8110 None:intergenic 25.0%
!!! CAAAGTTATTTTTCAAGAAG+GGG - tig0015629:8139-8158 None:intergenic 25.0%
!!! CACAAAGTTATTTTTCAAGA+AGG - tig0015629:8141-8160 None:intergenic 25.0%
! CTTCTTGAAAAATAACTTTG+TGG + tig0015629:8139-8158 Msa1356500:intron 25.0%
! AACATAAGACATATCATGAA+AGG + tig0015629:8377-8396 Msa1356500:intron 25.0%
! AAAGATTGATGTTCTGTATA+AGG - tig0015629:8482-8501 None:intergenic 25.0%
!! CATTTCTTGTTATAAACACT+TGG - tig0015629:8565-8584 None:intergenic 25.0%
! TATATAACTCTGTATCAAAG+TGG - tig0015629:8980-8999 None:intergenic 25.0%
!!! GTAGTGAGTTTTAATTTTGT+TGG - tig0015629:9007-9026 None:intergenic 25.0%
!!! TTTTAAAGAAAACGATAAGG+GGG - tig0015629:9049-9068 None:intergenic 25.0%
!!! GTTTTAAAGAAAACGATAAG+GGG - tig0015629:9050-9069 None:intergenic 25.0%
!!! CAGTTTTAAAGAAAACGATA+AGG - tig0015629:9052-9071 None:intergenic 25.0%
! TTCAGATTGATGAATTCAAA+GGG - tig0015629:9077-9096 None:intergenic 25.0%
!! ATATCTTTTTCTTCTAACGT+AGG - tig0015629:9202-9221 None:intergenic 25.0%
!!! AGTTGCTTATTTTGATTCTT+TGG + tig0015629:9254-9273 Msa1356500:intron 25.0%
! TTGTATAACTATTTACCTAC+AGG + tig0015629:9322-9341 Msa1356500:intron 25.0%
!!! ATAACTTGGTGCATTTTTTT+TGG - tig0015629:9367-9386 None:intergenic 25.0%
! ACTGCACAAAAAATTACATA+AGG - tig0015629:9410-9429 None:intergenic 25.0%
!!! ATGTAATTTTTTGTGCAGTT+TGG + tig0015629:9411-9430 Msa1356500:intron 25.0%
GCAATAAAATTTAGAAGGCA+AGG + tig0015629:7188-7207 Msa1356500:five_prime_UTR 30.0%
ATAAAATTTAGAAGGCAAGG+AGG + tig0015629:7191-7210 Msa1356500:five_prime_UTR 30.0%
!! GACTTTGGTTTCTGTATTTT+AGG - tig0015629:7711-7730 None:intergenic 30.0%
AAATACAGAAACCAAAGTCA+AGG + tig0015629:7712-7731 Msa1356500:CDS 30.0%
CAAATTAAAATGGTGTCTTG+GGG - tig0015629:8090-8109 None:intergenic 30.0%
CTCAAATTAAAATGGTGTCT+TGG - tig0015629:8092-8111 None:intergenic 30.0%
GACGATCTCTCAAATTAAAA+TGG - tig0015629:8100-8119 None:intergenic 30.0%
TAATTGGACGGATATTCAAA+AGG - tig0015629:8281-8300 None:intergenic 30.0%
TTTGAATATCCGTCCAATTA+TGG + tig0015629:8281-8300 Msa1356500:intron 30.0%
TAAGACATATCATGAAAGGT+AGG + tig0015629:8381-8400 Msa1356500:intron 30.0%
GAATTGAAAGTTAATGTTGC+CGG - tig0015629:8616-8635 None:intergenic 30.0%
TTCAGATACTGTTGTTAAAG+AGG - tig0015629:8731-8750 None:intergenic 30.0%
GATGTGGTTAGAAGAAAATT+GGG - tig0015629:8832-8851 None:intergenic 30.0%
TGATGTGGTTAGAAGAAAAT+TGG - tig0015629:8833-8852 None:intergenic 30.0%
! ATTTTCTTCTAACCACATCA+TGG + tig0015629:8833-8852 Msa1356500:intron 30.0%
GTTCAGATTGATGAATTCAA+AGG - tig0015629:9078-9097 None:intergenic 30.0%
TTGCTTATCTACTAAGTGAA+AGG + tig0015629:9168-9187 Msa1356500:intron 30.0%
!!! TAATTTTTTGTGCAGTTTGG+TGG + tig0015629:9414-9433 Msa1356500:intron 30.0%
TCAATAGCAGTATAAACTCA+AGG - tig0015629:9484-9503 None:intergenic 30.0%
TGCTCACATAAACATTACAA+AGG - tig0015629:9544-9563 None:intergenic 30.0%
ACTTCAACTAACTATCAAGT+TGG - tig0015629:9676-9695 None:intergenic 30.0%
TCAAGTTTATTGCCACACTA+TGG + tig0015629:7384-7403 Msa1356500:CDS 35.0%
TTTGAAAACCTCCAACATGT+AGG - tig0015629:7425-7444 None:intergenic 35.0%
! GTTTTCAAAGTGAGAGGAAT+TGG + tig0015629:7436-7455 Msa1356500:CDS 35.0%
AACATACCTCAAACTCTATC+AGG + tig0015629:7654-7673 Msa1356500:CDS 35.0%
CAACTAGATAGACATCATAG+AGG + tig0015629:8007-8026 Msa1356500:intron 35.0%
!!! TATTTTTCAAGAAGGGGTTG+CGG - tig0015629:8133-8152 None:intergenic 35.0%
! TCAAAAGGTGTAAACCATGA+AGG - tig0015629:8266-8285 None:intergenic 35.0%
GTCCTTTCTCTTATAATGCA+TGG - tig0015629:8311-8330 None:intergenic 35.0%
TTGGTTTCGAGATTACATCA+AGG - tig0015629:8451-8470 None:intergenic 35.0%
TAATCTCGAAACCAAAACCT+TGG + tig0015629:8456-8475 Msa1356500:intron 35.0%
!! ATCGATTTTGACAAAGGCTT+TGG - tig0015629:8515-8534 None:intergenic 35.0%
!! CTAGTGATCGATTTTGACAA+AGG - tig0015629:8521-8540 None:intergenic 35.0%
ATGGTTATTTGGTATGGAGT+TGG - tig0015629:8684-8703 None:intergenic 35.0%
!! GTGTTGATGGTTATTTGGTA+TGG - tig0015629:8690-8709 None:intergenic 35.0%
!! TATGGGTGTTGATGGTTATT+TGG - tig0015629:8695-8714 None:intergenic 35.0%
CTAAGAAAGACATCCTTAAG+AGG + tig0015629:8757-8776 Msa1356500:intron 35.0%
!! TTCATTTTGGCATGATCTGT+GGG - tig0015629:8794-8813 None:intergenic 35.0%
!! TTTCATTTTGGCATGATCTG+TGG - tig0015629:8795-8814 None:intergenic 35.0%
GTTAGAAGAAAATTGGGAGA+TGG - tig0015629:8826-8845 None:intergenic 35.0%
TTATTAGTGGTTCCATGATG+TGG - tig0015629:8848-8867 None:intergenic 35.0%
GTGAGAGGACTATTTATTAG+TGG - tig0015629:8861-8880 None:intergenic 35.0%
AAATGGTGTCTCTATCTTGA+AGG + tig0015629:8944-8963 Msa1356500:intron 35.0%
! TCTGTATCAAAGTGGATTTG+GGG - tig0015629:8972-8991 None:intergenic 35.0%
! CTCTGTATCAAAGTGGATTT+GGG - tig0015629:8973-8992 None:intergenic 35.0%
! ACTCTGTATCAAAGTGGATT+TGG - tig0015629:8974-8993 None:intergenic 35.0%
! CTACTAAGTGAAAGGTCTTT+TGG + tig0015629:9176-9195 Msa1356500:intron 35.0%
! TTTGAGACTTAATCTCCTGT+AGG - tig0015629:9340-9359 None:intergenic 35.0%
ACAGTCACAGATTGTTGAAG+TGG + tig0015629:7280-7299 Msa1356500:five_prime_UTR 40.0%
AAACCTCCAACATGTAGGAA+TGG - tig0015629:7420-7439 None:intergenic 40.0%
! TTGGAGGTTTTCAAAGTGAG+AGG + tig0015629:7430-7449 Msa1356500:CDS 40.0%
GATTCTGCTTTCCTTGACTT+TGG - tig0015629:7726-7745 None:intergenic 40.0%
GTGGTCCTATGATGTTAAGA+GGG - tig0015629:7809-7828 None:intergenic 40.0%
AGTGGTCCTATGATGTTAAG+AGG - tig0015629:7810-7829 None:intergenic 40.0%
! CCTTGTTTGAAAACAACGAG+TGG - tig0015629:7828-7847 None:intergenic 40.0%
!! CCACTCGTTGTTTTCAAACA+AGG + tig0015629:7825-7844 Msa1356500:CDS 40.0%
! GTTTTCGATCTCGTCATTAC+TGG + tig0015629:7847-7866 Msa1356500:CDS 40.0%
ATGTCTATCTAGTTGCCAGT+TGG - tig0015629:8002-8021 None:intergenic 40.0%
TTAAAATGGTGTCTTGGGGA+TGG - tig0015629:8086-8105 None:intergenic 40.0%
!!! GAGAACCGGCTTTCTTTTTT+GGG - tig0015629:8192-8211 None:intergenic 40.0%
!!! AGAGAACCGGCTTTCTTTTT+TGG - tig0015629:8193-8212 None:intergenic 40.0%
CATAAGCGTTTGAAGAGAAC+CGG - tig0015629:8206-8225 None:intergenic 40.0%
TCTCTTCTTGCATGCAAACT+CGG - tig0015629:8234-8253 None:intergenic 40.0%
AGAGATGTTGAACACCTTCA+TGG + tig0015629:8249-8268 Msa1356500:intron 40.0%
AATATCCGTCCAATTATGGC+AGG + tig0015629:8285-8304 Msa1356500:intron 40.0%
GGCCATGCATTATAAGAGAA+AGG + tig0015629:8306-8325 Msa1356500:intron 40.0%
AAGGACAAGAGAAGAAGAGA+TGG + tig0015629:8325-8344 Msa1356500:intron 40.0%
AGGAAGACTAGCAACTAAAG+AGG - tig0015629:8431-8450 None:intergenic 40.0%
! TCTGTATAAGGCCAAGGTTT+TGG - tig0015629:8470-8489 None:intergenic 40.0%
TGATGTTCTGTATAAGGCCA+AGG - tig0015629:8476-8495 None:intergenic 40.0%
GTTATTTGGTATGGAGTTGG+TGG - tig0015629:8681-8700 None:intergenic 40.0%
TAGGTGAAAACTAGTGTGAG+AGG - tig0015629:8876-8895 None:intergenic 40.0%
ATGAATTTGAGCTGGGAAGT+AGG - tig0015629:8920-8939 None:intergenic 40.0%
GTCACAGATTGTTGAAGTGG+TGG + tig0015629:7283-7302 Msa1356500:five_prime_UTR 45.0%
GATTGTTGAAGTGGTGGTTG+TGG + tig0015629:7289-7308 Msa1356500:five_prime_UTR 45.0%
AACATGTAGGAATGGCATGG+AGG - tig0015629:7412-7431 None:intergenic 45.0%
TCCATGCCATTCCTACATGT+TGG + tig0015629:7411-7430 Msa1356500:CDS 45.0%
TCCAACATGTAGGAATGGCA+TGG - tig0015629:7415-7434 None:intergenic 45.0%
ATGCCATTCCTACATGTTGG+AGG + tig0015629:7414-7433 Msa1356500:CDS 45.0%
GACATTACTCTCACTCTGCA+GGG - tig0015629:7514-7533 None:intergenic 45.0%
TGACATTACTCTCACTCTGC+AGG - tig0015629:7515-7534 None:intergenic 45.0%
TACCTTTCTCACAACTGCTG+TGG + tig0015629:7569-7588 Msa1356500:CDS 45.0%
TACCACAGCAGTTGTGAGAA+AGG - tig0015629:7574-7593 None:intergenic 45.0%
AGGAAAGCAGAATCATGCAC+AGG + tig0015629:7732-7751 Msa1356500:CDS 45.0%
! TGTGTCACTACTTGCATCAG+AGG + tig0015629:7759-7778 Msa1356500:CDS 45.0%
GAAGGCCCTCTTAACATCAT+AGG + tig0015629:7801-7820 Msa1356500:CDS 45.0%
CAACCAAAGACACCAAACCA+CGG + tig0015629:8163-8182 Msa1356500:intron 45.0%
!!! AACCGGCTTTCTTTTTTGGG+TGG - tig0015629:8189-8208 None:intergenic 45.0%
AATGCATGGCCTGCCATAAT+TGG - tig0015629:8297-8316 None:intergenic 45.0%
TCCCCAACATTGTTCAACAC+CGG + tig0015629:8594-8613 Msa1356500:intron 45.0%
! TGCCGGTGTTGAACAATGTT+GGG - tig0015629:8599-8618 None:intergenic 45.0%
! TTGCCGGTGTTGAACAATGT+TGG - tig0015629:8600-8619 None:intergenic 45.0%
!! ATTTGGTATGGAGTTGGTGG+TGG - tig0015629:8678-8697 None:intergenic 45.0%
TGTTGTTAAAGAGGCCAGCA+CGG - tig0015629:8722-8741 None:intergenic 45.0%
!! GGTTGGTTGGTTTCCTCTTA+AGG - tig0015629:8773-8792 None:intergenic 45.0%
! TTTTGGCATGATCTGTGGGT+TGG - tig0015629:8790-8809 None:intergenic 45.0%
! TTCTTTGTGGTGGAGAGACT+AGG - tig0015629:8895-8914 None:intergenic 45.0%
GAAGTAGGAGTTCTTTGTGG+TGG - tig0015629:8905-8924 None:intergenic 45.0%
TGGGAAGTAGGAGTTCTTTG+TGG - tig0015629:8908-8927 None:intergenic 45.0%
CACTCGCCTGATAGAGTTTG+AGG - tig0015629:7663-7682 None:intergenic 50.0%
GTCACTACTTGCATCAGAGG+TGG + tig0015629:7762-7781 Msa1356500:CDS 50.0%
ACTTGCATCAGAGGTGGTGA+TGG + tig0015629:7768-7787 Msa1356500:CDS 50.0%
ATGTTAAGAGGGCCTTCACC+AGG - tig0015629:7798-7817 None:intergenic 50.0%
! GTTTGTTGGTGAAGGCTGGT+AGG - tig0015629:8064-8083 None:intergenic 50.0%
!! GATGGTTTGTTGGTGAAGGC+TGG - tig0015629:8068-8087 None:intergenic 50.0%
!! TGGGGATGGTTTGTTGGTGA+AGG - tig0015629:8072-8091 None:intergenic 50.0%
! GTGTCTTGGGGATGGTTTGT+TGG - tig0015629:8078-8097 None:intergenic 50.0%
!! CGTGGTTTGGTGTCTTTGGT+TGG - tig0015629:8165-8184 None:intergenic 50.0%
!!! TTTTTTGGGTGGCCGTGGTT+TGG - tig0015629:8178-8197 None:intergenic 50.0%
!!! CTTTCTTTTTTGGGTGGCCG+TGG - tig0015629:8183-8202 None:intergenic 50.0%
GGCCACCCAAAAAAGAAAGC+CGG + tig0015629:8184-8203 Msa1356500:intron 50.0%
CATGGCCTGCCATAATTGGA+CGG - tig0015629:8293-8312 None:intergenic 50.0%
AAGAGGCTTTCGCTAGCAGA+GGG - tig0015629:8414-8433 None:intergenic 50.0%
AAAGAGGCTTTCGCTAGCAG+AGG - tig0015629:8415-8434 None:intergenic 50.0%
! GCCGGTGTTGAACAATGTTG+GGG - tig0015629:8598-8617 None:intergenic 50.0%
GGCATGGAGGATCCATAGTG+TGG - tig0015629:7399-7418 None:intergenic 55.0%
!! TGGCCGTGGTTTGGTGTCTT+TGG - tig0015629:8169-8188 None:intergenic 55.0%
AGAGGCTTTCGCTAGCAGAG+GGG - tig0015629:8413-8432 None:intergenic 55.0%
!! TATGGAGTTGGTGGTGGAGG+AGG - tig0015629:8672-8691 None:intergenic 55.0%
!! TGGTATGGAGTTGGTGGTGG+AGG - tig0015629:8675-8694 None:intergenic 55.0%
!! ACGGCGGATATGGGTGTTGA+TGG - tig0015629:8703-8722 None:intergenic 55.0%
TGTTAAAGAGGCCAGCACGG+CGG - tig0015629:8719-8738 None:intergenic 55.0%
!! GGCATGATCTGTGGGTTGGT+TGG - tig0015629:8786-8805 None:intergenic 55.0%
!! AGAGGTGGTGATGGCTCTCC+TGG + tig0015629:7777-7796 Msa1356500:CDS 60.0%
! GGTGATGGCTCTCCTGGTGA+AGG + tig0015629:7783-7802 Msa1356500:CDS 60.0%
GAGGCTTTCGCTAGCAGAGG+GGG - tig0015629:8412-8431 None:intergenic 60.0%
AACACCCATATCCGCCGTGC+TGG + tig0015629:8705-8724 Msa1356500:intron 60.0%
GAGGCCAGCACGGCGGATAT+GGG - tig0015629:8712-8731 None:intergenic 65.0%
AGAGGCCAGCACGGCGGATA+TGG - tig0015629:8713-8732 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0015629 gene 7138 9698 7138 ID=Msa1356500;Name=Msa1356500
tig0015629 mRNA 7138 9698 7138 ID=Msa1356500-mRNA-1;Parent=Msa1356500;Name=Msa1356500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=231|1|1|1|0|0|2|212|185
tig0015629 exon 7138 7868 7138 ID=Msa1356500-mRNA-1:exon:9944;Parent=Msa1356500-mRNA-1
tig0015629 exon 9429 9698 9429 ID=Msa1356500-mRNA-1:exon:9945;Parent=Msa1356500-mRNA-1
tig0015629 five_prime_UTR 7138 7368 7138 ID=Msa1356500-mRNA-1:five_prime_utr;Parent=Msa1356500-mRNA-1
tig0015629 CDS 7369 7868 7369 ID=Msa1356500-mRNA-1:cds;Parent=Msa1356500-mRNA-1
tig0015629 CDS 9429 9486 9429 ID=Msa1356500-mRNA-1:cds;Parent=Msa1356500-mRNA-1
tig0015629 three_prime_UTR 9487 9698 9487 ID=Msa1356500-mRNA-1:three_prime_utr;Parent=Msa1356500-mRNA-1
Gene Sequence

>Msa1356500

ATGTTAATTTGTGGCTCAAGTTTATTGCCACACTATGGATCCTCCATGCCATTCCTACATGTTGGAGGTTTTCAAAGTGAGAGGAATTGGCACAGCAAGAACAACAATTCAAGTAGAAGAAGCATCATCATCACTTGTAAATCCCTGCAGAGTGAGAGTAATGTCAAAAGAGTATGCAACAAATACAGTGTTACACTTGCTACCTTTCTCACAACTGCTGTGGTAATAGCATCAATTGCAACAGTTGATGCAGCAACATATGATGAACAAGAAGAGACTTTATCAAACATACCTCAAACTCTATCAGGCGAGTGCAAAACAGCTCAAGATTGCAAGAAACCTAAAATACAGAAACCAAAGTCAAGGAAAGCAGAATCATGCACAGGTAAGTGTGTCACTACTTGCATCAGAGGTGGTGATGGCTCTCCTGGTGAAGGCCCTCTTAACATCATAGGACCACTCGTTGTTTTCAAACAAGGTTTTCGATCTCGTCATTACTGTTTGGTGGAATGTTCAGATATCTGTAATTTGATAAGCAGTGCTGACAACGTGCCTTGA

Protein sequence

>Msa1356500

MLICGSSLLPHYGSSMPFLHVGGFQSERNWHSKNNNSSRRSIIITCKSLQSESNVKRVCNKYSVTLATFLTTAVVIASIATVDAATYDEQEETLSNIPQTLSGECKTAQDCKKPKIQKPKSRKAESCTGKCVTTCIRGGDGSPGEGPLNIIGPLVVFKQGFRSRHYCLVECSDICNLISSADNVP*