AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0970160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970160 MtrunA17_Chr6g0449011 93.514 185 12 0 1 185 1 185 1.30e-130 363
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970160 AT1G78995.1 71.277 94 19 2 92 185 74 159 6.15e-39 131

Find 44 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAGTTTATATGCTTAAT+AGG 0.173323 6_4:-1625007 None:intergenic
CTATTGATATTATTAACTTT+AGG 0.227308 6_4:+1627190 Msa0970160:three_prime_UTR
TATTGATATTATTAACTTTA+GGG 0.285324 6_4:+1627191 Msa0970160:three_prime_UTR
CTTTAGCAATAAAATTTAGA+AGG 0.340200 6_4:+1624876 Msa0970160:five_prime_UTR
TAAAGTTTATATGCTTAATA+GGG 0.350274 6_4:-1625006 None:intergenic
CACTCGCCTGATAGAGTTTG+AGG 0.359156 6_4:-1625353 None:intergenic
AACATACCTCAAACTCTATC+AGG 0.361189 6_4:+1625347 Msa0970160:CDS
TCAAGTTTATTGCCACACTA+TGG 0.388806 6_4:+1625077 Msa0970160:CDS
GATTCTGCTTTCCTTGACTT+TGG 0.395114 6_4:-1625416 None:intergenic
ATGCCATTCCTACATGTTGG+AGG 0.449830 6_4:+1625107 Msa0970160:CDS
AGAGGTGGTGATGGCTCTCC+TGG 0.450651 6_4:+1625470 Msa0970160:CDS
AACTTTAAATGTATGAATGA+AGG 0.458604 6_4:+1625022 Msa0970160:five_prime_UTR
TGACATTACTCTCACTCTGC+AGG 0.459007 6_4:-1625205 None:intergenic
AGTGGTCCTATGATGTTAAG+AGG 0.471184 6_4:-1625500 None:intergenic
AGAAAGATAATGTTAATTTG+TGG 0.472379 6_4:+1625053 Msa0970160:exon
GCAATAAAATTTAGAAGGCA+AGG 0.474839 6_4:+1624881 Msa0970160:five_prime_UTR
GGTGATGGCTCTCCTGGTGA+AGG 0.481595 6_4:+1625476 Msa0970160:CDS
GAAGGCCCTCTTAACATCAT+AGG 0.486069 6_4:+1625494 Msa0970160:CDS
TACCACAGCAGTTGTGAGAA+AGG 0.498036 6_4:-1625264 None:intergenic
GATTGTTGAAGTGGTGGTTG+TGG 0.539051 6_4:+1624982 Msa0970160:five_prime_UTR
ACTTTAAATGTATGAATGAA+GGG 0.541386 6_4:+1625023 Msa0970160:five_prime_UTR
GACATTACTCTCACTCTGCA+GGG 0.543231 6_4:-1625204 None:intergenic
ACTTGCATCAGAGGTGGTGA+TGG 0.545114 6_4:+1625461 Msa0970160:CDS
TCCATGCCATTCCTACATGT+TGG 0.551983 6_4:+1625104 Msa0970160:CDS
ATGTTAAGAGGGCCTTCACC+AGG 0.552852 6_4:-1625488 None:intergenic
ACTTCAACTAACTATCAAGT+TGG 0.563862 6_4:-1627366 None:intergenic
ACTAGTACGAAGTTTATCAC+TGG 0.571255 6_4:+1624824 None:intergenic
ACAGTCACAGATTGTTGAAG+TGG 0.578388 6_4:+1624973 Msa0970160:five_prime_UTR
TGTGTCACTACTTGCATCAG+AGG 0.586797 6_4:+1625452 Msa0970160:CDS
AAACCTCCAACATGTAGGAA+TGG 0.587280 6_4:-1625110 None:intergenic
TCAATAGCAGTATAAACTCA+AGG 0.591268 6_4:-1627174 None:intergenic
TTTGAAAACCTCCAACATGT+AGG 0.601658 6_4:-1625115 None:intergenic
TCCAACATGTAGGAATGGCA+TGG 0.608402 6_4:-1625105 None:intergenic
TACCTTTCTCACAACTGCTG+TGG 0.615363 6_4:+1625262 Msa0970160:CDS
AGGAAAGCAGAATCATGCAC+AGG 0.616667 6_4:+1625425 Msa0970160:CDS
AAATACAGAAACCAAAGTCA+AGG 0.616765 6_4:+1625405 Msa0970160:CDS
GTGGTCCTATGATGTTAAGA+GGG 0.627783 6_4:-1625499 None:intergenic
TGCTCACATAAACATTACAA+AGG 0.637572 6_4:-1627234 None:intergenic
GTCACAGATTGTTGAAGTGG+TGG 0.642771 6_4:+1624976 Msa0970160:five_prime_UTR
CCTTGTTTGAAAACAACGAG+TGG 0.655728 6_4:-1625518 None:intergenic
ATAAAATTTAGAAGGCAAGG+AGG 0.658672 6_4:+1624884 Msa0970160:five_prime_UTR
GGCATGGAGGATCCATAGTG+TGG 0.671482 6_4:-1625089 None:intergenic
GTCACTACTTGCATCAGAGG+TGG 0.688742 6_4:+1625455 Msa0970160:CDS
AACATGTAGGAATGGCATGG+AGG 0.710592 6_4:-1625102 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAATGAATTAAAAAAA+GGG + chr6_4:1626828-1626847 Msa0970160:intron 10.0%
!! TATTGATATTATTAACTTTA+GGG + chr6_4:1627191-1627210 Msa0970160:three_prime_UTR 10.0%
!!! AATTTTATTCTTTCAAATTT+CGG + chr6_4:1627308-1627327 Msa0970160:three_prime_UTR 10.0%
!! TAAAGTTTATATGCTTAATA+GGG - chr6_4:1625009-1625028 None:intergenic 15.0%
!! TTAAAGTTTATATGCTTAAT+AGG - chr6_4:1625010-1625029 None:intergenic 15.0%
!! TAAATTATAGCAAAAAGTTA+AGG - chr6_4:1625576-1625595 None:intergenic 15.0%
!!! CTTTTTTTAATTCATTAATC+TGG - chr6_4:1626829-1626848 None:intergenic 15.0%
!! CAGATTAATGAATTAAAAAA+AGG + chr6_4:1626827-1626846 Msa0970160:intron 15.0%
!!! AATATGAATTGCTTATTTTT+TGG + chr6_4:1626988-1627007 Msa0970160:intron 15.0%
!! CTATTGATATTATTAACTTT+AGG + chr6_4:1627190-1627209 Msa0970160:three_prime_UTR 15.0%
!!! AAATTTTATTGCTAAAGCAT+TGG - chr6_4:1624873-1624892 None:intergenic 20.0%
!! CTTTAGCAATAAAATTTAGA+AGG + chr6_4:1624876-1624895 Msa0970160:five_prime_UTR 20.0%
!! AACTTTAAATGTATGAATGA+AGG + chr6_4:1625022-1625041 Msa0970160:five_prime_UTR 20.0%
!! ACTTTAAATGTATGAATGAA+GGG + chr6_4:1625023-1625042 Msa0970160:five_prime_UTR 20.0%
!!! AGAAAGATAATGTTAATTTG+TGG + chr6_4:1625053-1625072 Msa0970160:exon 20.0%
!!! ACAAAGTTATTTTTCAAGAA+GGG - chr6_4:1625833-1625852 None:intergenic 20.0%
!!! ATGGAAAAAGTATTTCATTT+TGG - chr6_4:1626500-1626519 None:intergenic 20.0%
!! TTTAAATATGAATTTGAGCT+GGG - chr6_4:1626620-1626639 None:intergenic 20.0%
!! ATTTAAATATGAATTTGAGC+TGG - chr6_4:1626621-1626640 None:intergenic 20.0%
!! AGCTCAAATTCATATTTAAA+TGG + chr6_4:1626620-1626639 Msa0970160:intron 20.0%
!!! AGTTTTAAAGAAAACGATAA+GGG - chr6_4:1626744-1626763 None:intergenic 20.0%
!! TCAATTGAAAGATAATAACT+TGG - chr6_4:1627074-1627093 None:intergenic 20.0%
!!! ATTTATTTTGAAGTTCCAAC+TGG + chr6_4:1625677-1625696 Msa0970160:intron 25.0%
! TCAAATTAAAATGGTGTCTT+GGG - chr6_4:1625784-1625803 None:intergenic 25.0%
!!! CAAAGTTATTTTTCAAGAAG+GGG - chr6_4:1625832-1625851 None:intergenic 25.0%
!!! CACAAAGTTATTTTTCAAGA+AGG - chr6_4:1625834-1625853 None:intergenic 25.0%
! CTTCTTGAAAAATAACTTTG+TGG + chr6_4:1625832-1625851 Msa0970160:intron 25.0%
! TAATTAGACGGATATTCAAA+AGG - chr6_4:1625974-1625993 None:intergenic 25.0%
! TTTGAATATCCGTCTAATTA+TGG + chr6_4:1625974-1625993 Msa0970160:intron 25.0%
! AACATAAGACATATCATGAA+AGG + chr6_4:1626070-1626089 Msa0970160:intron 25.0%
! AAAGATTGATGTTCTGTATA+AGG - chr6_4:1626175-1626194 None:intergenic 25.0%
!! CATTTCTTGTTATAAACACT+TGG - chr6_4:1626258-1626277 None:intergenic 25.0%
! TATATAACTCTGTATCAAAG+TGG - chr6_4:1626673-1626692 None:intergenic 25.0%
!!! GTAGTGAGTTTTAATTTTGT+TGG - chr6_4:1626700-1626719 None:intergenic 25.0%
!!! TTTTAAAGAAAACGATAAGG+GGG - chr6_4:1626742-1626761 None:intergenic 25.0%
!!! GTTTTAAAGAAAACGATAAG+GGG - chr6_4:1626743-1626762 None:intergenic 25.0%
!!! CAGTTTTAAAGAAAACGATA+AGG - chr6_4:1626745-1626764 None:intergenic 25.0%
! TTCAGATTGATGAATTCAAA+GGG - chr6_4:1626770-1626789 None:intergenic 25.0%
!! ATATCTTTTTCTTCTAACGT+AGG - chr6_4:1626895-1626914 None:intergenic 25.0%
!!! AGTTGCTTATTTTGATTCTT+TGG + chr6_4:1626947-1626966 Msa0970160:intron 25.0%
! TTGTATAACTATTTACCTAC+AGG + chr6_4:1627015-1627034 Msa0970160:intron 25.0%
!!! ATAACTTGGTGCATTTTTTT+TGG - chr6_4:1627060-1627079 None:intergenic 25.0%
! ACTGCACAAAAAATTACATA+AGG - chr6_4:1627103-1627122 None:intergenic 25.0%
!!! ATGTAATTTTTTGTGCAGTT+TGG + chr6_4:1627104-1627123 Msa0970160:intron 25.0%
GCAATAAAATTTAGAAGGCA+AGG + chr6_4:1624881-1624900 Msa0970160:five_prime_UTR 30.0%
ATAAAATTTAGAAGGCAAGG+AGG + chr6_4:1624884-1624903 Msa0970160:five_prime_UTR 30.0%
!! GACTTTGGTTTCTGTATTTT+AGG - chr6_4:1625404-1625423 None:intergenic 30.0%
AAATACAGAAACCAAAGTCA+AGG + chr6_4:1625405-1625424 Msa0970160:CDS 30.0%
CAAATTAAAATGGTGTCTTG+GGG - chr6_4:1625783-1625802 None:intergenic 30.0%
CTCAAATTAAAATGGTGTCT+TGG - chr6_4:1625785-1625804 None:intergenic 30.0%
GACGATCTCTCAAATTAAAA+TGG - chr6_4:1625793-1625812 None:intergenic 30.0%
TAAGACATATCATGAAAGGT+AGG + chr6_4:1626074-1626093 Msa0970160:intron 30.0%
GAATTGAAAGTTAATGTTGC+CGG - chr6_4:1626309-1626328 None:intergenic 30.0%
TTCAGATACTGTTGTTAAAG+AGG - chr6_4:1626424-1626443 None:intergenic 30.0%
GATGTGGTTAGAAGAAAATT+GGG - chr6_4:1626525-1626544 None:intergenic 30.0%
TGATGTGGTTAGAAGAAAAT+TGG - chr6_4:1626526-1626545 None:intergenic 30.0%
! ATTTTCTTCTAACCACATCA+TGG + chr6_4:1626526-1626545 Msa0970160:intron 30.0%
GTTCAGATTGATGAATTCAA+AGG - chr6_4:1626771-1626790 None:intergenic 30.0%
TTGCTTATCTACTAAGTGAA+AGG + chr6_4:1626861-1626880 Msa0970160:intron 30.0%
!!! TAATTTTTTGTGCAGTTTGG+TGG + chr6_4:1627107-1627126 Msa0970160:intron 30.0%
TCAATAGCAGTATAAACTCA+AGG - chr6_4:1627177-1627196 None:intergenic 30.0%
TGCTCACATAAACATTACAA+AGG - chr6_4:1627237-1627256 None:intergenic 30.0%
ACTTCAACTAACTATCAAGT+TGG - chr6_4:1627369-1627388 None:intergenic 30.0%
TCAAGTTTATTGCCACACTA+TGG + chr6_4:1625077-1625096 Msa0970160:CDS 35.0%
TTTGAAAACCTCCAACATGT+AGG - chr6_4:1625118-1625137 None:intergenic 35.0%
! GTTTTCAAAGTGAGAGGAAT+TGG + chr6_4:1625129-1625148 Msa0970160:CDS 35.0%
AACATACCTCAAACTCTATC+AGG + chr6_4:1625347-1625366 Msa0970160:CDS 35.0%
CAACTAGATAGACATCATAG+AGG + chr6_4:1625700-1625719 Msa0970160:intron 35.0%
!!! TATTTTTCAAGAAGGGGTTG+CGG - chr6_4:1625826-1625845 None:intergenic 35.0%
! TCAAAAGGTGTAAACCATGA+AGG - chr6_4:1625959-1625978 None:intergenic 35.0%
AATATCCGTCTAATTATGGC+AGG + chr6_4:1625978-1625997 Msa0970160:intron 35.0%
GTCCTTTCTCTTATAATGCA+TGG - chr6_4:1626004-1626023 None:intergenic 35.0%
TTGGTTTCGAGATTACATCA+AGG - chr6_4:1626144-1626163 None:intergenic 35.0%
TAATCTCGAAACCAAAACCT+TGG + chr6_4:1626149-1626168 Msa0970160:intron 35.0%
!! ATCGATTTTGACAAAGGCTT+TGG - chr6_4:1626208-1626227 None:intergenic 35.0%
!! CTAGTGATCGATTTTGACAA+AGG - chr6_4:1626214-1626233 None:intergenic 35.0%
ATGGTTATTTGGTATGGAGT+TGG - chr6_4:1626377-1626396 None:intergenic 35.0%
!! GTGTTGATGGTTATTTGGTA+TGG - chr6_4:1626383-1626402 None:intergenic 35.0%
!! TATGGGTGTTGATGGTTATT+TGG - chr6_4:1626388-1626407 None:intergenic 35.0%
CTAAGAAAGACATCCTTAAG+AGG + chr6_4:1626450-1626469 Msa0970160:intron 35.0%
!! TTCATTTTGGCATGATCTGT+GGG - chr6_4:1626487-1626506 None:intergenic 35.0%
!! TTTCATTTTGGCATGATCTG+TGG - chr6_4:1626488-1626507 None:intergenic 35.0%
GTTAGAAGAAAATTGGGAGA+TGG - chr6_4:1626519-1626538 None:intergenic 35.0%
TTATTAGTGGTTCCATGATG+TGG - chr6_4:1626541-1626560 None:intergenic 35.0%
GTGAGAGGACTATTTATTAG+TGG - chr6_4:1626554-1626573 None:intergenic 35.0%
AAATGGTGTCTCTATCTTGA+AGG + chr6_4:1626637-1626656 Msa0970160:intron 35.0%
! TCTGTATCAAAGTGGATTTG+GGG - chr6_4:1626665-1626684 None:intergenic 35.0%
! CTCTGTATCAAAGTGGATTT+GGG - chr6_4:1626666-1626685 None:intergenic 35.0%
! ACTCTGTATCAAAGTGGATT+TGG - chr6_4:1626667-1626686 None:intergenic 35.0%
! CTACTAAGTGAAAGGTCTTT+TGG + chr6_4:1626869-1626888 Msa0970160:intron 35.0%
! TTTGAGACTTAATCTCCTGT+AGG - chr6_4:1627033-1627052 None:intergenic 35.0%
ACAGTCACAGATTGTTGAAG+TGG + chr6_4:1624973-1624992 Msa0970160:five_prime_UTR 40.0%
AAACCTCCAACATGTAGGAA+TGG - chr6_4:1625113-1625132 None:intergenic 40.0%
! TTGGAGGTTTTCAAAGTGAG+AGG + chr6_4:1625123-1625142 Msa0970160:CDS 40.0%
GATTCTGCTTTCCTTGACTT+TGG - chr6_4:1625419-1625438 None:intergenic 40.0%
GTGGTCCTATGATGTTAAGA+GGG - chr6_4:1625502-1625521 None:intergenic 40.0%
AGTGGTCCTATGATGTTAAG+AGG - chr6_4:1625503-1625522 None:intergenic 40.0%
! CCTTGTTTGAAAACAACGAG+TGG - chr6_4:1625521-1625540 None:intergenic 40.0%
!! CCACTCGTTGTTTTCAAACA+AGG + chr6_4:1625518-1625537 Msa0970160:CDS 40.0%
! GTTTTCGATCTCGTCATTAC+TGG + chr6_4:1625540-1625559 Msa0970160:CDS 40.0%
ATGTCTATCTAGTTGCCAGT+TGG - chr6_4:1625695-1625714 None:intergenic 40.0%
TTAAAATGGTGTCTTGGGGA+TGG - chr6_4:1625779-1625798 None:intergenic 40.0%
!!! GAGAACCGGCTTTCTTTTTT+GGG - chr6_4:1625885-1625904 None:intergenic 40.0%
!!! AGAGAACCGGCTTTCTTTTT+TGG - chr6_4:1625886-1625905 None:intergenic 40.0%
CATAAGCGTTTGAAGAGAAC+CGG - chr6_4:1625899-1625918 None:intergenic 40.0%
TCTCTTCTTGCATGCAAACT+CGG - chr6_4:1625927-1625946 None:intergenic 40.0%
AGAGATGTTGAACACCTTCA+TGG + chr6_4:1625942-1625961 Msa0970160:intron 40.0%
GGCCATGCATTATAAGAGAA+AGG + chr6_4:1625999-1626018 Msa0970160:intron 40.0%
AAGGACAAGAGAAGAAGAGA+TGG + chr6_4:1626018-1626037 Msa0970160:intron 40.0%
AGGAAGACTAGCAACTAAAG+AGG - chr6_4:1626124-1626143 None:intergenic 40.0%
! TCTGTATAAGGCCAAGGTTT+TGG - chr6_4:1626163-1626182 None:intergenic 40.0%
TGATGTTCTGTATAAGGCCA+AGG - chr6_4:1626169-1626188 None:intergenic 40.0%
GTTATTTGGTATGGAGTTGG+TGG - chr6_4:1626374-1626393 None:intergenic 40.0%
TAGGTGAAAACTAGTGTGAG+AGG - chr6_4:1626569-1626588 None:intergenic 40.0%
ATGAATTTGAGCTGGGAAGT+AGG - chr6_4:1626613-1626632 None:intergenic 40.0%
GTCACAGATTGTTGAAGTGG+TGG + chr6_4:1624976-1624995 Msa0970160:five_prime_UTR 45.0%
GATTGTTGAAGTGGTGGTTG+TGG + chr6_4:1624982-1625001 Msa0970160:five_prime_UTR 45.0%
AACATGTAGGAATGGCATGG+AGG - chr6_4:1625105-1625124 None:intergenic 45.0%
TCCATGCCATTCCTACATGT+TGG + chr6_4:1625104-1625123 Msa0970160:CDS 45.0%
TCCAACATGTAGGAATGGCA+TGG - chr6_4:1625108-1625127 None:intergenic 45.0%
ATGCCATTCCTACATGTTGG+AGG + chr6_4:1625107-1625126 Msa0970160:CDS 45.0%
GACATTACTCTCACTCTGCA+GGG - chr6_4:1625207-1625226 None:intergenic 45.0%
TGACATTACTCTCACTCTGC+AGG - chr6_4:1625208-1625227 None:intergenic 45.0%
TACCTTTCTCACAACTGCTG+TGG + chr6_4:1625262-1625281 Msa0970160:CDS 45.0%
TACCACAGCAGTTGTGAGAA+AGG - chr6_4:1625267-1625286 None:intergenic 45.0%
AGGAAAGCAGAATCATGCAC+AGG + chr6_4:1625425-1625444 Msa0970160:CDS 45.0%
! TGTGTCACTACTTGCATCAG+AGG + chr6_4:1625452-1625471 Msa0970160:CDS 45.0%
GAAGGCCCTCTTAACATCAT+AGG + chr6_4:1625494-1625513 Msa0970160:CDS 45.0%
CAACCAAAGACACCAAACCA+CGG + chr6_4:1625856-1625875 Msa0970160:intron 45.0%
!!! AACCGGCTTTCTTTTTTGGG+TGG - chr6_4:1625882-1625901 None:intergenic 45.0%
CATGGCCTGCCATAATTAGA+CGG - chr6_4:1625986-1626005 None:intergenic 45.0%
TCCCCAACATTGTTCAACAC+CGG + chr6_4:1626287-1626306 Msa0970160:intron 45.0%
! TGCCGGTGTTGAACAATGTT+GGG - chr6_4:1626292-1626311 None:intergenic 45.0%
! TTGCCGGTGTTGAACAATGT+TGG - chr6_4:1626293-1626312 None:intergenic 45.0%
!! ATTTGGTATGGAGTTGGTGG+TGG - chr6_4:1626371-1626390 None:intergenic 45.0%
TGTTGTTAAAGAGGCCAGCA+CGG - chr6_4:1626415-1626434 None:intergenic 45.0%
!! GGTTGGTTGGTTTCCTCTTA+AGG - chr6_4:1626466-1626485 None:intergenic 45.0%
! TTTTGGCATGATCTGTGGGT+TGG - chr6_4:1626483-1626502 None:intergenic 45.0%
! TTCTTTGTGGTGGAGAGACT+AGG - chr6_4:1626588-1626607 None:intergenic 45.0%
GAAGTAGGAGTTCTTTGTGG+TGG - chr6_4:1626598-1626617 None:intergenic 45.0%
TGGGAAGTAGGAGTTCTTTG+TGG - chr6_4:1626601-1626620 None:intergenic 45.0%
CACTCGCCTGATAGAGTTTG+AGG - chr6_4:1625356-1625375 None:intergenic 50.0%
GTCACTACTTGCATCAGAGG+TGG + chr6_4:1625455-1625474 Msa0970160:CDS 50.0%
ACTTGCATCAGAGGTGGTGA+TGG + chr6_4:1625461-1625480 Msa0970160:CDS 50.0%
ATGTTAAGAGGGCCTTCACC+AGG - chr6_4:1625491-1625510 None:intergenic 50.0%
! GTTTGTTGGTGAAGGCTGGT+AGG - chr6_4:1625757-1625776 None:intergenic 50.0%
!! GATGGTTTGTTGGTGAAGGC+TGG - chr6_4:1625761-1625780 None:intergenic 50.0%
!! TGGGGATGGTTTGTTGGTGA+AGG - chr6_4:1625765-1625784 None:intergenic 50.0%
! GTGTCTTGGGGATGGTTTGT+TGG - chr6_4:1625771-1625790 None:intergenic 50.0%
!! CGTGGTTTGGTGTCTTTGGT+TGG - chr6_4:1625858-1625877 None:intergenic 50.0%
!!! TTTTTTGGGTGGCCGTGGTT+TGG - chr6_4:1625871-1625890 None:intergenic 50.0%
!!! CTTTCTTTTTTGGGTGGCCG+TGG - chr6_4:1625876-1625895 None:intergenic 50.0%
GGCCACCCAAAAAAGAAAGC+CGG + chr6_4:1625877-1625896 Msa0970160:intron 50.0%
AAGAGGCTTTCGCTAGCAGA+GGG - chr6_4:1626107-1626126 None:intergenic 50.0%
AAAGAGGCTTTCGCTAGCAG+AGG - chr6_4:1626108-1626127 None:intergenic 50.0%
! GCCGGTGTTGAACAATGTTG+GGG - chr6_4:1626291-1626310 None:intergenic 50.0%
GGCATGGAGGATCCATAGTG+TGG - chr6_4:1625092-1625111 None:intergenic 55.0%
!! TGGCCGTGGTTTGGTGTCTT+TGG - chr6_4:1625862-1625881 None:intergenic 55.0%
AGAGGCTTTCGCTAGCAGAG+GGG - chr6_4:1626106-1626125 None:intergenic 55.0%
!! TATGGAGTTGGTGGTGGAGG+AGG - chr6_4:1626365-1626384 None:intergenic 55.0%
!! TGGTATGGAGTTGGTGGTGG+AGG - chr6_4:1626368-1626387 None:intergenic 55.0%
!! ACGGCGGATATGGGTGTTGA+TGG - chr6_4:1626396-1626415 None:intergenic 55.0%
TGTTAAAGAGGCCAGCACGG+CGG - chr6_4:1626412-1626431 None:intergenic 55.0%
!! GGCATGATCTGTGGGTTGGT+TGG - chr6_4:1626479-1626498 None:intergenic 55.0%
!! AGAGGTGGTGATGGCTCTCC+TGG + chr6_4:1625470-1625489 Msa0970160:CDS 60.0%
! GGTGATGGCTCTCCTGGTGA+AGG + chr6_4:1625476-1625495 Msa0970160:CDS 60.0%
GAGGCTTTCGCTAGCAGAGG+GGG - chr6_4:1626105-1626124 None:intergenic 60.0%
AACACCCATATCCGCCGTGC+TGG + chr6_4:1626398-1626417 Msa0970160:intron 60.0%
GAGGCCAGCACGGCGGATAT+GGG - chr6_4:1626405-1626424 None:intergenic 65.0%
AGAGGCCAGCACGGCGGATA+TGG - chr6_4:1626406-1626425 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 1624831 1627391 1624831 ID=Msa0970160;Name=Msa0970160
chr6_4 mRNA 1624831 1627391 1624831 ID=Msa0970160-mRNA-1;Parent=Msa0970160;Name=Msa0970160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=231|1|1|1|0|0|2|212|185
chr6_4 exon 1624831 1625561 1624831 ID=Msa0970160-mRNA-1:exon:803;Parent=Msa0970160-mRNA-1
chr6_4 exon 1627122 1627391 1627122 ID=Msa0970160-mRNA-1:exon:804;Parent=Msa0970160-mRNA-1
chr6_4 five_prime_UTR 1624831 1625061 1624831 ID=Msa0970160-mRNA-1:five_prime_utr;Parent=Msa0970160-mRNA-1
chr6_4 CDS 1625062 1625561 1625062 ID=Msa0970160-mRNA-1:cds;Parent=Msa0970160-mRNA-1
chr6_4 CDS 1627122 1627179 1627122 ID=Msa0970160-mRNA-1:cds;Parent=Msa0970160-mRNA-1
chr6_4 three_prime_UTR 1627180 1627391 1627180 ID=Msa0970160-mRNA-1:three_prime_utr;Parent=Msa0970160-mRNA-1
Gene Sequence

>Msa0970160

ATGTTAATTTGTGGCTCAAGTTTATTGCCACACTATGGATCCTCCATGCCATTCCTACATGTTGGAGGTTTTCAAAGTGAGAGGAATTGGCACAGCAAGAACAACAATTCAAGTAGAAGAAGCATCATCATCACTTGTAAATCCCTGCAGAGTGAGAGTAATGTCAAAAGAGTATGCAACAAATACAGTGTTACACTTGCTACCTTTCTCACAACTGCTGTGGTAATAGCATCAATTGCAACAGTTGATGCAGCAACATATGATGAACAAGAAGAGACTTTATCAAACATACCTCAAACTCTATCAGGCGAGTGCAAAACAGCTCAAGATTGCAAGAAACCTAAAATACAGAAACCAAAGTCAAGGAAAGCAGAATCATGCACAGGTAAGTGTGTCACTACTTGCATCAGAGGTGGTGATGGCTCTCCTGGTGAAGGCCCTCTTAACATCATAGGACCACTCGTTGTTTTCAAACAAGGTTTTCGATCTCGTCATTACTGTTTGGTGGAATGTTCAGATATCTGTAATTTGATAAGCAGTGCTGACAACGTGCCTTGA

Protein sequence

>Msa0970160

MLICGSSLLPHYGSSMPFLHVGGFQSERNWHSKNNNSSRRSIIITCKSLQSESNVKRVCNKYSVTLATFLTTAVVIASIATVDAATYDEQEETLSNIPQTLSGECKTAQDCKKPKIQKPKSRKAESCTGKCVTTCIRGGDGSPGEGPLNIIGPLVVFKQGFRSRHYCLVECSDICNLISSADNVP*