AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028450 MtrunA17_Chr1g0184951 97.406 347 9 0 1 347 1 347 0.0 704
Msa0028450 MtrunA17_Chr1g0188121 76.286 350 70 3 1 347 1 340 0.0 520
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028450 AT3G63410.1 78.797 349 61 5 1 347 1 338 0.0 516

Find 94 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACTCCACGATACCATTT+TGG 0.111746 1_1:-53403359 None:intergenic
AACCAAACCCATTTCCATTT+TGG 0.136694 1_1:-53402039 None:intergenic
TCGATATACTCTTCTTCTTT+AGG 0.193738 1_1:-53403287 None:intergenic
CAAGAATCAATGCTAAAATT+AGG 0.196925 1_1:+53402107 Msa0028450:CDS
TCGCCGTCATGGCTTGATTA+TGG 0.203458 1_1:+53403379 Msa0028450:CDS
GTTTACGAAGGCAGGGTTTA+AGG 0.206012 1_1:+53403313 Msa0028450:CDS
CGATATACTCTTCTTCTTTA+GGG 0.222755 1_1:-53403286 None:intergenic
CTCTCAGATTGGCTGATCTT+TGG 0.227283 1_1:-53404878 None:intergenic
TACAATGTTTCTCTTCAAAT+TGG 0.240007 1_1:-53402134 None:intergenic
GTCCTGTCTACCCGACATTT+TGG 0.244718 1_1:+53403228 Msa0028450:CDS
TTGAATTGCAAAACCCAAAA+TGG 0.251263 1_1:+53402025 Msa0028450:CDS
CGCCGTCATGGCTTGATTAT+GGG 0.259408 1_1:+53403380 Msa0028450:CDS
ATCTGGGGATTCTCCTTTGC+AGG 0.267355 1_1:+53403430 Msa0028450:CDS
CGCGTTTCTTCGCAGATGTT+TGG 0.268470 1_1:+53403255 Msa0028450:CDS
TTAAGGATGTCCAGCTAAAA+AGG 0.270534 1_1:+53403330 Msa0028450:CDS
ACAAGTGGACTTATAAAATA+AGG 0.279635 1_1:-53405109 None:intergenic
TCTCAGATTGGCTGATCTTT+GGG 0.280706 1_1:-53404877 None:intergenic
AAGAAGACAAAGGGATTTAC+AGG 0.286308 1_1:-53404772 None:intergenic
TTCTTACTGCGCTTTGCCTT+GGG 0.316900 1_1:+53404790 Msa0028450:CDS
TCTTTGAGCCACATGTAAAT+AGG 0.317118 1_1:-53404844 None:intergenic
CTTCTTACTGCGCTTTGCCT+TGG 0.324170 1_1:+53404789 Msa0028450:CDS
AAGAATCAATGCTAAAATTA+GGG 0.329851 1_1:+53402108 Msa0028450:CDS
TGCAAAACCCAAAATGGAAA+TGG 0.342940 1_1:+53402031 Msa0028450:CDS
GTTGATGTTGGTGGTGGTAC+TGG 0.349346 1_1:+53402355 Msa0028450:CDS
ACTGGTGTTAAGCCTGCATC+TGG 0.356332 1_1:+53403413 Msa0028450:CDS
ACCCAAAATGGAAATGGGTT+TGG 0.363731 1_1:+53402037 Msa0028450:CDS
CCAATCTGAGAGAGATTTGT+AGG 0.373317 1_1:+53404889 Msa0028450:exon
TGTTTCTCAGCATTGAATAC+TGG 0.398556 1_1:+53403135 Msa0028450:intron
GGTACTGGTTTCACTACATT+GGG 0.400200 1_1:+53402370 Msa0028450:CDS
AAGGATTGTAAAATTGTTGA+AGG 0.409383 1_1:+53402481 Msa0028450:CDS
AAAGCAAAAGGAACCACTTA+AGG 0.411490 1_1:+53402462 Msa0028450:CDS
TGAAGATGATACACTAGAAC+TGG 0.417480 1_1:-53402164 None:intergenic
AATATGCTTGTTGTTGATGT+TGG 0.423767 1_1:+53402343 Msa0028450:CDS
ATAAACCTAGGTTGTGAACT+TGG 0.425109 1_1:-53402190 None:intergenic
ATCGAGTGGTTTACGAAGGC+AGG 0.431658 1_1:+53403305 Msa0028450:CDS
ATTATGGGTTGTTCTGTGAC+TGG 0.435412 1_1:+53403395 Msa0028450:CDS
TTGATGCCACGCTGTGGATC+CGG 0.441360 1_1:-53403158 None:intergenic
GCAAAACCCAAAATGGAAAT+GGG 0.445634 1_1:+53402032 Msa0028450:CDS
ATGTTATAAACCCTGGTCAT+TGG 0.460038 1_1:+53402269 Msa0028450:CDS
ATGCTTGTTGTTGATGTTGG+TGG 0.461058 1_1:+53402346 Msa0028450:CDS
GGAAATGGGTTTGGTTTCAC+AGG 0.462226 1_1:+53402046 Msa0028450:CDS
AACCAAAATGTCGGGTAGAC+AGG 0.473847 1_1:-53403230 None:intergenic
TGGGCGTCCTAGCAGCTTCG+TGG 0.475392 1_1:+53404809 Msa0028450:CDS
TTCCTATCAGTAAGTTCAGC+TGG 0.478104 1_1:-53402322 None:intergenic
TGGTACTGGTTTCACTACAT+TGG 0.488035 1_1:+53402369 Msa0028450:CDS
AGGATTGTAAAATTGTTGAA+GGG 0.496213 1_1:+53402482 Msa0028450:CDS
GTGGCATCAAGGAAGCATAC+AGG 0.498940 1_1:+53403171 Msa0028450:CDS
TTCACAGGTTCAGATTTCAA+TGG 0.502460 1_1:+53402061 Msa0028450:CDS
CCTACAAATCTCTCTCAGAT+TGG 0.504843 1_1:-53404889 None:intergenic
CTTGTTGTTGATGTTGGTGG+TGG 0.511570 1_1:+53402349 Msa0028450:CDS
AACCAGCTGAACTTACTGAT+AGG 0.522090 1_1:+53402320 Msa0028450:CDS
TTTGCTGCAGCTTGGTCCAA+AGG 0.523778 1_1:+53404732 Msa0028450:intron
CTGGTGTTAAGCCTGCATCT+GGG 0.528996 1_1:+53403414 Msa0028450:CDS
AACGCGACAACCAAAATGTC+GGG 0.531908 1_1:-53403238 None:intergenic
GCTTGCTAAAGCAAAGCAAA+AGG 0.534201 1_1:+53402450 Msa0028450:CDS
TATTGATTCCTATTTACATG+TGG 0.537530 1_1:+53404836 Msa0028450:CDS
AAAGGAGAATCCCCAGATGC+AGG 0.539061 1_1:-53403425 None:intergenic
GGATCCACAGCGTGGCATCA+AGG 0.541356 1_1:+53403160 Msa0028450:CDS
CAAGACCAAGTTCACAACCT+AGG 0.556920 1_1:+53402185 Msa0028450:CDS
TATCGTGGAGTTCGCCGTCA+TGG 0.558525 1_1:+53403368 Msa0028450:CDS
GGATTGTAAAATTGTTGAAG+GGG 0.558559 1_1:+53402483 Msa0028450:CDS
AAGCGCAGTAAGAAGACAAA+GGG 0.559888 1_1:-53404781 None:intergenic
TGGTGTTAAGCCTGCATCTG+GGG 0.564309 1_1:+53403415 Msa0028450:CDS
ATACAAACCACGAAGCTGCT+AGG 0.565899 1_1:-53404816 None:intergenic
ATATCTTCAGTCCAATGACC+AGG 0.572070 1_1:-53402280 None:intergenic
TCTCAGCATTGAATACTGGC+CGG 0.576769 1_1:+53403139 Msa0028450:intron
AAGATGACAAATACCTGCAA+AGG 0.577073 1_1:-53403443 None:intergenic
GCTGATAGATATGTGTCCGC+TGG 0.579059 1_1:+53402538 Msa0028450:CDS
TCAGCATAATCAGTTCGAAA+GGG 0.581535 1_1:-53402520 None:intergenic
ATCAGCATAATCAGTTCGAA+AGG 0.586784 1_1:-53402521 None:intergenic
TCGAGTGGTTTACGAAGGCA+GGG 0.588098 1_1:+53403306 Msa0028450:CDS
GAATTGAGGTTACCGAGTAG+TGG 0.589175 1_1:-53401839 None:intergenic
TTTGCTTTAGCAAGCTGATG+AGG 0.594550 1_1:-53402442 None:intergenic
ATAGATATGTGTCCGCTGGA+AGG 0.594629 1_1:+53402542 Msa0028450:CDS
TGGCATCAAGGAAGCATACA+GGG 0.598551 1_1:+53403172 Msa0028450:CDS
AAAGCGCAGTAAGAAGACAA+AGG 0.601046 1_1:-53404782 None:intergenic
CGAAGCTGCTAGGACGCCCA+AGG 0.601692 1_1:-53404806 None:intergenic
AACCCATAATCAAGCCATGA+CGG 0.615385 1_1:-53403382 None:intergenic
AAACGCGACAACCAAAATGT+CGG 0.616259 1_1:-53403239 None:intergenic
GTGTAAGATTATTACATATG+CGG 0.628265 1_1:+53404961 Msa0028450:three_prime_UTR
GCAGAAGATTGAAACGAAGG+TGG 0.638476 1_1:-53401782 None:intergenic
GCTTCCTTGATGCCACGCTG+TGG 0.644008 1_1:-53403164 None:intergenic
ACTCTCTCTCTACCACTACT+CGG 0.650592 1_1:+53401827 Msa0028450:five_prime_UTR
GTAGTGGTAGAGAGAGAGTG+AGG 0.655128 1_1:-53401823 None:intergenic
TATCTTCAGTCCAATGACCA+GGG 0.655879 1_1:-53402279 None:intergenic
AATGACCAGGGTTTATAACA+TGG 0.658874 1_1:-53402267 None:intergenic
ATTGGCCCAAAATGGTATCG+TGG 0.672762 1_1:+53403353 Msa0028450:CDS
GTAGCAGAAGATTGAAACGA+AGG 0.677715 1_1:-53401785 None:intergenic
GTATATCGAGTGGTTTACGA+AGG 0.686187 1_1:+53403301 Msa0028450:CDS
ATGGCTTCACTAATGCTCAG+TGG 0.694171 1_1:+53401983 Msa0028450:CDS
TATGACCATGTTATAAACCC+TGG 0.696580 1_1:+53402262 Msa0028450:CDS
TACTGGCCGGATCCACAGCG+TGG 0.700858 1_1:+53403152 Msa0028450:CDS
AAGAAGAAGAGTATATCGAG+TGG 0.708626 1_1:+53403291 Msa0028450:CDS
GACATCGATATACCTTCCAG+CGG 0.718494 1_1:-53402554 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTATTTTCAATTG+CGG + chr1_1:53404372-53404391 Msa0028450:intron 10.0%
!! ATAAAATTAAAAAACATACC+TGG - chr1_1:53404363-53404382 None:intergenic 15.0%
!!! TTAATTTTATTTTCAATTGC+GGG + chr1_1:53404373-53404392 Msa0028450:intron 15.0%
!!! TATTTTATCAAATTTCACAA+TGG + chr1_1:53404992-53405011 Msa0028450:three_prime_UTR 15.0%
!!! TGAATTTTTCACATTAGAAT+GGG - chr1_1:53401921-53401940 None:intergenic 20.0%
!!! GATTTTGTAGATTAATTCAA+TGG + chr1_1:53401964-53401983 Msa0028450:intron 20.0%
!! AAGAATCAATGCTAAAATTA+GGG + chr1_1:53402108-53402127 Msa0028450:CDS 20.0%
!! AACCATGCATAATTATTTAA+AGG - chr1_1:53402611-53402630 None:intergenic 20.0%
!! CTATAACAAGAGAAAAATAA+AGG - chr1_1:53402832-53402851 None:intergenic 20.0%
!! TTTGATTAAGCATAAAAGAA+GGG - chr1_1:53403499-53403518 None:intergenic 20.0%
!! ATTTGATTAAGCATAAAAGA+AGG - chr1_1:53403500-53403519 None:intergenic 20.0%
!! TTTATGCTTAATCAAATCAA+AGG + chr1_1:53403503-53403522 Msa0028450:intron 20.0%
!! GAATAATAGATAGAAAAAAG+AGG - chr1_1:53403840-53403859 None:intergenic 20.0%
!!! ATTTTTACATGAAATGACTA+TGG + chr1_1:53403975-53403994 Msa0028450:intron 20.0%
!! AAGTTTAACCATATTAAATG+TGG + chr1_1:53404116-53404135 Msa0028450:intron 20.0%
!! ATCATGTTTGATATTTAAGT+TGG + chr1_1:53404156-53404175 Msa0028450:intron 20.0%
!! TGATTTATTATTGTTAAGTG+TGG + chr1_1:53404257-53404276 Msa0028450:intron 20.0%
!!! GAATATAGAGATTTTGATTT+AGG - chr1_1:53404548-53404567 None:intergenic 20.0%
!!! AAAACTGAATTTGAGTTGAA+AGG - chr1_1:53401883-53401902 None:intergenic 25.0%
!! GTGAATTTTTCACATTAGAA+TGG - chr1_1:53401922-53401941 None:intergenic 25.0%
!!! TAGCATTGATTCTTGTTTTT+GGG - chr1_1:53402102-53402121 None:intergenic 25.0%
!!! TTAGCATTGATTCTTGTTTT+TGG - chr1_1:53402103-53402122 None:intergenic 25.0%
! CAAGAATCAATGCTAAAATT+AGG + chr1_1:53402107-53402126 Msa0028450:CDS 25.0%
! TACAATGTTTCTCTTCAAAT+TGG - chr1_1:53402137-53402156 None:intergenic 25.0%
!! TTTTTGTGTTGTATAAACCT+AGG - chr1_1:53402205-53402224 None:intergenic 25.0%
!!! AACACAAAAAAGAAGCATTT+TGG + chr1_1:53402215-53402234 Msa0028450:CDS 25.0%
!!! AAGAAGCATTTTGGTTTTAT+AGG + chr1_1:53402224-53402243 Msa0028450:CDS 25.0%
!! ACAATTTTACAATCCTTAAG+TGG - chr1_1:53402478-53402497 None:intergenic 25.0%
! AAGGATTGTAAAATTGTTGA+AGG + chr1_1:53402481-53402500 Msa0028450:CDS 25.0%
! AGGATTGTAAAATTGTTGAA+GGG + chr1_1:53402482-53402501 Msa0028450:CDS 25.0%
! AAGTGTACATAGATATAAAG+TGG + chr1_1:53402997-53403016 Msa0028450:intron 25.0%
!! AATCAAAGGTATGTTGTATA+AGG + chr1_1:53403517-53403536 Msa0028450:intron 25.0%
! CATAAACACTATATGCTTTA+CGG + chr1_1:53403620-53403639 Msa0028450:intron 25.0%
! GAAAAAAGAGGTAAACTTAA+AGG - chr1_1:53403828-53403847 None:intergenic 25.0%
! TCAGTAAGCATATAGATATA+GGG - chr1_1:53403956-53403975 None:intergenic 25.0%
! ATCAGTAAGCATATAGATAT+AGG - chr1_1:53403957-53403976 None:intergenic 25.0%
!!! ATGTTTGATATTTAAGTTGG+AGG + chr1_1:53404159-53404178 Msa0028450:intron 25.0%
!! AGTTGATATCAATGTAGATA+TGG + chr1_1:53404335-53404354 Msa0028450:intron 25.0%
! GTTGATATCAATGTAGATAT+GGG + chr1_1:53404336-53404355 Msa0028450:intron 25.0%
!!! TATTGATTCCTATTTACATG+TGG + chr1_1:53404836-53404855 Msa0028450:CDS 25.0%
! AAAACGTTGAAAAAAAGACA+CGG - chr1_1:53404936-53404955 None:intergenic 25.0%
! GTGTAAGATTATTACATATG+CGG + chr1_1:53404961-53404980 Msa0028450:three_prime_UTR 25.0%
!! GAATTTGAGTTGAAAGGAAT+GGG - chr1_1:53401877-53401896 None:intergenic 30.0%
!! TGAATTTGAGTTGAAAGGAA+TGG - chr1_1:53401878-53401897 None:intergenic 30.0%
TTGAATTGCAAAACCCAAAA+TGG + chr1_1:53402025-53402044 Msa0028450:CDS 30.0%
!!! AGCATTGATTCTTGTTTTTG+GGG - chr1_1:53402101-53402120 None:intergenic 30.0%
!! AATATGCTTGTTGTTGATGT+TGG + chr1_1:53402343-53402362 Msa0028450:CDS 30.0%
GGATTGTAAAATTGTTGAAG+GGG + chr1_1:53402483-53402502 Msa0028450:CDS 30.0%
CGCCTTTAAATAATTATGCA+TGG + chr1_1:53402606-53402625 Msa0028450:intron 30.0%
TCAAATAAGCCAATCCAAAT+AGG - chr1_1:53402691-53402710 None:intergenic 30.0%
! TGTTTTCGTATAAGCTATCT+TGG - chr1_1:53402804-53402823 None:intergenic 30.0%
!! AAAGTAGATTGCTTTGAAAG+AGG + chr1_1:53403093-53403112 Msa0028450:intron 30.0%
!!! CATACAGGGTTTTGAAATTT+GGG + chr1_1:53403186-53403205 Msa0028450:CDS 30.0%
!!! ATACAGGGTTTTGAAATTTG+GGG + chr1_1:53403187-53403206 Msa0028450:CDS 30.0%
CGATATACTCTTCTTCTTTA+GGG - chr1_1:53403289-53403308 None:intergenic 30.0%
TCGATATACTCTTCTTCTTT+AGG - chr1_1:53403290-53403309 None:intergenic 30.0%
!! TATAAGGTTGTTTCTCCTTA+TGG + chr1_1:53403533-53403552 Msa0028450:intron 30.0%
CGTAAAGCATATAGTGTTTA+TGG - chr1_1:53403622-53403641 None:intergenic 30.0%
TTGAAATAGTCATCAGTTGA+GGG - chr1_1:53403673-53403692 None:intergenic 30.0%
! TTTGAAATAGTCATCAGTTG+AGG - chr1_1:53403674-53403693 None:intergenic 30.0%
GTTCCTAAAATATTGCAAGT+AGG - chr1_1:53403735-53403754 None:intergenic 30.0%
!!! TGTAAATCCCCTTTTTTATC+CGG + chr1_1:53403770-53403789 Msa0028450:intron 30.0%
AAGAGGTAAACTTAAAGGAT+GGG - chr1_1:53403823-53403842 None:intergenic 30.0%
AAAGAGGTAAACTTAAAGGA+TGG - chr1_1:53403824-53403843 None:intergenic 30.0%
CCAACAAAAAAACATGTACA+GGG - chr1_1:53403908-53403927 None:intergenic 30.0%
TCCAACAAAAAAACATGTAC+AGG - chr1_1:53403909-53403928 None:intergenic 30.0%
GGAAGTTTCCACATTTAATA+TGG - chr1_1:53404127-53404146 None:intergenic 30.0%
ATCAAACATGATCACTTCAA+TGG - chr1_1:53404148-53404167 None:intergenic 30.0%
CATAAGGATTACAATTGGTA+GGG - chr1_1:53404432-53404451 None:intergenic 30.0%
ACATAAGGATTACAATTGGT+AGG - chr1_1:53404433-53404452 None:intergenic 30.0%
CAAGACATAAGGATTACAAT+TGG - chr1_1:53404437-53404456 None:intergenic 30.0%
CAATTGTAATCCTTATGTCT+TGG + chr1_1:53404435-53404454 Msa0028450:intron 30.0%
GAGTTATGAACAAAACACTA+CGG + chr1_1:53404474-53404493 Msa0028450:intron 30.0%
ATTCAGCTTAACAAAGCTAT+AGG + chr1_1:53404564-53404583 Msa0028450:intron 30.0%
TAACAAAGCTATAGGATTTG+AGG + chr1_1:53404572-53404591 Msa0028450:intron 30.0%
! TTTTCAACATCTTCTTCCTT+TGG - chr1_1:53404751-53404770 None:intergenic 30.0%
! TTTTTCTGCAAGCTTTTTAC+AGG + chr1_1:53405050-53405069 Msa0028450:three_prime_UTR 30.0%
!!! GGTTTTATTAGACATTTCCA+GGG - chr1_1:53405091-53405110 None:intergenic 30.0%
!!! AGGTTTTATTAGACATTTCC+AGG - chr1_1:53405092-53405111 None:intergenic 30.0%
GGAAATTTAGCAGAGAATTG+AGG - chr1_1:53401856-53401875 None:intergenic 35.0%
TGCAAAACCCAAAATGGAAA+TGG + chr1_1:53402031-53402050 Msa0028450:CDS 35.0%
GCAAAACCCAAAATGGAAAT+GGG + chr1_1:53402032-53402051 Msa0028450:CDS 35.0%
! ACCAAACCCATTTCCATTTT+GGG - chr1_1:53402041-53402060 None:intergenic 35.0%
! AACCAAACCCATTTCCATTT+TGG - chr1_1:53402042-53402061 None:intergenic 35.0%
TTCACAGGTTCAGATTTCAA+TGG + chr1_1:53402061-53402080 Msa0028450:CDS 35.0%
TGAAGATGATACACTAGAAC+TGG - chr1_1:53402167-53402186 None:intergenic 35.0%
ATAAACCTAGGTTGTGAACT+TGG - chr1_1:53402193-53402212 None:intergenic 35.0%
TATGACCATGTTATAAACCC+TGG + chr1_1:53402262-53402281 Msa0028450:CDS 35.0%
AATGACCAGGGTTTATAACA+TGG - chr1_1:53402270-53402289 None:intergenic 35.0%
ATGTTATAAACCCTGGTCAT+TGG + chr1_1:53402269-53402288 Msa0028450:CDS 35.0%
AAAGCAAAAGGAACCACTTA+AGG + chr1_1:53402462-53402481 Msa0028450:CDS 35.0%
TCAGCATAATCAGTTCGAAA+GGG - chr1_1:53402523-53402542 None:intergenic 35.0%
ATCAGCATAATCAGTTCGAA+AGG - chr1_1:53402524-53402543 None:intergenic 35.0%
! TGTTCTTCTTGATGACTGTT+AGG + chr1_1:53402664-53402683 Msa0028450:intron 35.0%
! GTTCTTCTTGATGACTGTTA+GGG + chr1_1:53402665-53402684 Msa0028450:intron 35.0%
GCTTATTTGAGCTCATTTAC+TGG + chr1_1:53402701-53402720 Msa0028450:intron 35.0%
AAAAAAACTAAGCCACTGCT+TGG - chr1_1:53402924-53402943 None:intergenic 35.0%
TGCAAATACACCTCTTTCAA+AGG - chr1_1:53403026-53403045 None:intergenic 35.0%
! TGTTTCTCAGCATTGAATAC+TGG + chr1_1:53403135-53403154 Msa0028450:intron 35.0%
!!! GCATACAGGGTTTTGAAATT+TGG + chr1_1:53403185-53403204 Msa0028450:CDS 35.0%
!!! TACAGGGTTTTGAAATTTGG+GGG + chr1_1:53403188-53403207 Msa0028450:CDS 35.0%
! AAGAAGAAGAGTATATCGAG+TGG + chr1_1:53403291-53403310 Msa0028450:CDS 35.0%
TTAAGGATGTCCAGCTAAAA+AGG + chr1_1:53403330-53403349 Msa0028450:CDS 35.0%
!! TAAAAAGGATTGGCCCAAAA+TGG + chr1_1:53403345-53403364 Msa0028450:CDS 35.0%
AAGATGACAAATACCTGCAA+AGG - chr1_1:53403446-53403465 None:intergenic 35.0%
TCAGTAAGTCATAACATGGT+AGG - chr1_1:53403599-53403618 None:intergenic 35.0%
ATGGTCAGTAAGTCATAACA+TGG - chr1_1:53403603-53403622 None:intergenic 35.0%
AAACACTATATGCTTTACGG+TGG + chr1_1:53403623-53403642 Msa0028450:intron 35.0%
AACACTATATGCTTTACGGT+GGG + chr1_1:53403624-53403643 Msa0028450:intron 35.0%
GTAGGCACATCTAATCTAAA+AGG - chr1_1:53403717-53403736 None:intergenic 35.0%
! GTGCCTACTTGCAATATTTT+AGG + chr1_1:53403729-53403748 Msa0028450:intron 35.0%
GTAAACTTAAAGGATGGGAT+AGG - chr1_1:53403818-53403837 None:intergenic 35.0%
!!! CCCTGTACATGTTTTTTTGT+TGG + chr1_1:53403905-53403924 Msa0028450:intron 35.0%
AGTTTAGTACCCAACAAGTA+TGG + chr1_1:53404305-53404324 Msa0028450:intron 35.0%
GTTTAGTACCCAACAAGTAT+GGG + chr1_1:53404306-53404325 Msa0028450:intron 35.0%
CTTCAATACCCATACTTGTT+GGG - chr1_1:53404317-53404336 None:intergenic 35.0%
ACTTCAATACCCATACTTGT+TGG - chr1_1:53404318-53404337 None:intergenic 35.0%
!! TTTATTTTCAATTGCGGGCA+TGG + chr1_1:53404378-53404397 Msa0028450:intron 35.0%
ACTTACACTTCCAAGACATA+AGG - chr1_1:53404448-53404467 None:intergenic 35.0%
CAATAGCCTTCAATGTTAAC+TGG + chr1_1:53404501-53404520 Msa0028450:intron 35.0%
CACTTATTACTTCCTTGCAT+TGG + chr1_1:53404629-53404648 Msa0028450:intron 35.0%
AAGAAGACAAAGGGATTTAC+AGG - chr1_1:53404775-53404794 None:intergenic 35.0%
TCTTTGAGCCACATGTAAAT+AGG - chr1_1:53404847-53404866 None:intergenic 35.0%
ATGAAAAACTGATCTCAACG+AGG - chr1_1:53405030-53405049 None:intergenic 35.0%
! GGTCATACTAATTTTATCCC+TGG + chr1_1:53405071-53405090 Msa0028450:three_prime_UTR 35.0%
!!! TGGAAATGTCGTTTTGAGTG+GGG - chr1_1:53401765-53401784 None:intergenic 40.0%
!!! GTGGAAATGTCGTTTTGAGT+GGG - chr1_1:53401766-53401785 None:intergenic 40.0%
GTAGCAGAAGATTGAAACGA+AGG - chr1_1:53401788-53401807 None:intergenic 40.0%
! ACCCAAAATGGAAATGGGTT+TGG + chr1_1:53402037-53402056 Msa0028450:CDS 40.0%
TATCTTCAGTCCAATGACCA+GGG - chr1_1:53402282-53402301 None:intergenic 40.0%
ATATCTTCAGTCCAATGACC+AGG - chr1_1:53402283-53402302 None:intergenic 40.0%
AACCAGCTGAACTTACTGAT+AGG + chr1_1:53402320-53402339 Msa0028450:CDS 40.0%
TTCCTATCAGTAAGTTCAGC+TGG - chr1_1:53402325-53402344 None:intergenic 40.0%
!! ATGCTTGTTGTTGATGTTGG+TGG + chr1_1:53402346-53402365 Msa0028450:CDS 40.0%
!! TGGTACTGGTTTCACTACAT+TGG + chr1_1:53402369-53402388 Msa0028450:CDS 40.0%
!! GGTACTGGTTTCACTACATT+GGG + chr1_1:53402370-53402389 Msa0028450:CDS 40.0%
TTTGCTTTAGCAAGCTGATG+AGG - chr1_1:53402445-53402464 None:intergenic 40.0%
! GCTTGCTAAAGCAAAGCAAA+AGG + chr1_1:53402450-53402469 Msa0028450:CDS 40.0%
! TAAAGGCGTATGAAACAGCA+TGG - chr1_1:53402594-53402613 None:intergenic 40.0%
CAGCTACAAGATTGCAACAA+AGG - chr1_1:53402968-53402987 None:intergenic 40.0%
! AAAGTGGCTTCCTTTGAAAG+AGG + chr1_1:53403013-53403032 Msa0028450:intron 40.0%
AAACGCGACAACCAAAATGT+CGG - chr1_1:53403242-53403261 None:intergenic 40.0%
GTATATCGAGTGGTTTACGA+AGG + chr1_1:53403301-53403320 Msa0028450:CDS 40.0%
GATGTCCAGCTAAAAAGGAT+TGG + chr1_1:53403335-53403354 Msa0028450:CDS 40.0%
! GAACTCCACGATACCATTTT+GGG - chr1_1:53403361-53403380 None:intergenic 40.0%
AACCCATAATCAAGCCATGA+CGG - chr1_1:53403385-53403404 None:intergenic 40.0%
! ATTATGGGTTGTTCTGTGAC+TGG + chr1_1:53403395-53403414 Msa0028450:CDS 40.0%
TGAAAAAACAGACACACACC+AGG - chr1_1:53403562-53403581 None:intergenic 40.0%
!!! GGTGTGTGTCTGTTTTTTCA+AGG + chr1_1:53403562-53403581 Msa0028450:intron 40.0%
GTCATAACATGGTAGGTATC+AGG - chr1_1:53403592-53403611 None:intergenic 40.0%
AGGTACTCCGGATAAAAAAG+GGG - chr1_1:53403780-53403799 None:intergenic 40.0%
CAGGTACTCCGGATAAAAAA+GGG - chr1_1:53403781-53403800 None:intergenic 40.0%
TCAGGTACTCCGGATAAAAA+AGG - chr1_1:53403782-53403801 None:intergenic 40.0%
ATAGGTTCTCAAATGTGCTC+AGG - chr1_1:53403800-53403819 None:intergenic 40.0%
CACACACAGACACTACAAAA+AGG - chr1_1:53404049-53404068 None:intergenic 40.0%
TTGGAGGAAAACTAGTTCCT+GGG + chr1_1:53404175-53404194 Msa0028450:intron 40.0%
ATCAATGTAGATATGGGTCC+AGG + chr1_1:53404342-53404361 Msa0028450:intron 40.0%
! TCTTGGAAGTGTAAGTAGCA+TGG + chr1_1:53404452-53404471 Msa0028450:intron 40.0%
AAGCGCAGTAAGAAGACAAA+GGG - chr1_1:53404784-53404803 None:intergenic 40.0%
AAAGCGCAGTAAGAAGACAA+AGG - chr1_1:53404785-53404804 None:intergenic 40.0%
! TCTCAGATTGGCTGATCTTT+GGG - chr1_1:53404880-53404899 None:intergenic 40.0%
CCTACAAATCTCTCTCAGAT+TGG - chr1_1:53404892-53404911 None:intergenic 40.0%
CCAATCTGAGAGAGATTTGT+AGG + chr1_1:53404889-53404908 Msa0028450:exon 40.0%
!!! GGTGGAAATGTCGTTTTGAG+TGG - chr1_1:53401767-53401786 None:intergenic 45.0%
GCAGAAGATTGAAACGAAGG+TGG - chr1_1:53401785-53401804 None:intergenic 45.0%
ACTCTCTCTCTACCACTACT+CGG + chr1_1:53401827-53401846 Msa0028450:five_prime_UTR 45.0%
GAATTGAGGTTACCGAGTAG+TGG - chr1_1:53401842-53401861 None:intergenic 45.0%
ATGGCTTCACTAATGCTCAG+TGG + chr1_1:53401983-53402002 Msa0028450:CDS 45.0%
! GGAAATGGGTTTGGTTTCAC+AGG + chr1_1:53402046-53402065 Msa0028450:CDS 45.0%
CAAGACCAAGTTCACAACCT+AGG + chr1_1:53402185-53402204 Msa0028450:CDS 45.0%
!! CTTGTTGTTGATGTTGGTGG+TGG + chr1_1:53402349-53402368 Msa0028450:CDS 45.0%
ATAGATATGTGTCCGCTGGA+AGG + chr1_1:53402542-53402561 Msa0028450:CDS 45.0%
GACATCGATATACCTTCCAG+CGG - chr1_1:53402557-53402576 None:intergenic 45.0%
GATGACTGTTAGGGCCTATT+TGG + chr1_1:53402674-53402693 Msa0028450:intron 45.0%
CTGTTAGGGCCTATTTGGAT+TGG + chr1_1:53402679-53402698 Msa0028450:intron 45.0%
TAAGCTGTTTAGCCAAGCAG+TGG + chr1_1:53402909-53402928 Msa0028450:intron 45.0%
! TCTCAGCATTGAATACTGGC+CGG + chr1_1:53403139-53403158 Msa0028450:intron 45.0%
! TGGCATCAAGGAAGCATACA+GGG + chr1_1:53403172-53403191 Msa0028450:CDS 45.0%
GGGGGCAAAGCATGTTTAAT+TGG + chr1_1:53403206-53403225 Msa0028450:CDS 45.0%
AACCAAAATGTCGGGTAGAC+AGG - chr1_1:53403233-53403252 None:intergenic 45.0%
AACGCGACAACCAAAATGTC+GGG - chr1_1:53403241-53403260 None:intergenic 45.0%
GTTTACGAAGGCAGGGTTTA+AGG + chr1_1:53403313-53403332 Msa0028450:CDS 45.0%
!! TTGGGCCAATCCTTTTTAGC+TGG - chr1_1:53403343-53403362 None:intergenic 45.0%
ATTGGCCCAAAATGGTATCG+TGG + chr1_1:53403353-53403372 Msa0028450:CDS 45.0%
! CGAACTCCACGATACCATTT+TGG - chr1_1:53403362-53403381 None:intergenic 45.0%
TGTTTCTCCTTATGGTGTCC+TGG + chr1_1:53403541-53403560 Msa0028450:intron 45.0%
TCAAATGTGCTCAGGTACTC+CGG - chr1_1:53403792-53403811 None:intergenic 45.0%
GTTGGAGGAAAACTAGTTCC+TGG + chr1_1:53404174-53404193 Msa0028450:intron 45.0%
! CCATTTTCTTTACCATGCCC+AGG - chr1_1:53404195-53404214 None:intergenic 45.0%
CCTGGGCATGGTAAAGAAAA+TGG + chr1_1:53404192-53404211 Msa0028450:intron 45.0%
GCCTTCAATGTTAACTGGTC+AGG + chr1_1:53404506-53404525 Msa0028450:intron 45.0%
GCCTGACCAGTTAACATTGA+AGG - chr1_1:53404510-53404529 None:intergenic 45.0%
! ACTGCAGTTTTGCCAATGCA+AGG - chr1_1:53404644-53404663 None:intergenic 45.0%
!! TTCTGCAATTTGCTGCAGCT+TGG + chr1_1:53404724-53404743 Msa0028450:intron 45.0%
TTCTTACTGCGCTTTGCCTT+GGG + chr1_1:53404790-53404809 Msa0028450:CDS 45.0%
ATACAAACCACGAAGCTGCT+AGG - chr1_1:53404819-53404838 None:intergenic 45.0%
! CTCTCAGATTGGCTGATCTT+TGG - chr1_1:53404881-53404900 None:intergenic 45.0%
!!! TTAGTTTTTTTTTTTTTTTT+TGG + chr1_1:53402933-53402952 Msa0028450:intron 5.0%
GTAGTGGTAGAGAGAGAGTG+AGG - chr1_1:53401826-53401845 None:intergenic 50.0%
!! GTTGATGTTGGTGGTGGTAC+TGG + chr1_1:53402355-53402374 Msa0028450:CDS 50.0%
GCTGATAGATATGTGTCCGC+TGG + chr1_1:53402538-53402557 Msa0028450:CDS 50.0%
! GTGGCATCAAGGAAGCATAC+AGG + chr1_1:53403171-53403190 Msa0028450:CDS 50.0%
! GTCCTGTCTACCCGACATTT+TGG + chr1_1:53403228-53403247 Msa0028450:CDS 50.0%
CGCGTTTCTTCGCAGATGTT+TGG + chr1_1:53403255-53403274 Msa0028450:CDS 50.0%
ATCGAGTGGTTTACGAAGGC+AGG + chr1_1:53403305-53403324 Msa0028450:CDS 50.0%
TCGAGTGGTTTACGAAGGCA+GGG + chr1_1:53403306-53403325 Msa0028450:CDS 50.0%
TCGCCGTCATGGCTTGATTA+TGG + chr1_1:53403379-53403398 Msa0028450:CDS 50.0%
CGCCGTCATGGCTTGATTAT+GGG + chr1_1:53403380-53403399 Msa0028450:CDS 50.0%
! ACTGGTGTTAAGCCTGCATC+TGG + chr1_1:53403413-53403432 Msa0028450:CDS 50.0%
! CTGGTGTTAAGCCTGCATCT+GGG + chr1_1:53403414-53403433 Msa0028450:CDS 50.0%
! TGGTGTTAAGCCTGCATCTG+GGG + chr1_1:53403415-53403434 Msa0028450:CDS 50.0%
AAAGGAGAATCCCCAGATGC+AGG - chr1_1:53403428-53403447 None:intergenic 50.0%
ATCTGGGGATTCTCCTTTGC+AGG + chr1_1:53403430-53403449 Msa0028450:CDS 50.0%
ACACACACCAGGACACCATA+AGG - chr1_1:53403551-53403570 None:intergenic 50.0%
GGAAAACTAGTTCCTGGGCA+TGG + chr1_1:53404180-53404199 Msa0028450:intron 50.0%
TTTGCTGCAGCTTGGTCCAA+AGG + chr1_1:53404732-53404751 Msa0028450:intron 50.0%
CTTCTTACTGCGCTTTGCCT+TGG + chr1_1:53404789-53404808 Msa0028450:CDS 50.0%
TTGATGCCACGCTGTGGATC+CGG - chr1_1:53403161-53403180 None:intergenic 55.0%
TATCGTGGAGTTCGCCGTCA+TGG + chr1_1:53403368-53403387 Msa0028450:CDS 55.0%
GGATCCACAGCGTGGCATCA+AGG + chr1_1:53403160-53403179 Msa0028450:CDS 60.0%
GCTTCCTTGATGCCACGCTG+TGG - chr1_1:53403167-53403186 None:intergenic 60.0%
TACTGGCCGGATCCACAGCG+TGG + chr1_1:53403152-53403171 Msa0028450:CDS 65.0%
CGAAGCTGCTAGGACGCCCA+AGG - chr1_1:53404809-53404828 None:intergenic 65.0%
TGGGCGTCCTAGCAGCTTCG+TGG + chr1_1:53404809-53404828 Msa0028450:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 53401755 53405126 53401755 ID=Msa0028450;Name=Msa0028450
chr1_1 mRNA 53401755 53405126 53401755 ID=Msa0028450-mRNA-1;Parent=Msa0028450;Name=Msa0028450-mRNA-1;_AED=0.04;_eAED=0.04;_QI=103|1|1|1|0.66|0.5|4|229|347
chr1_1 exon 53401755 53401848 53401755 ID=Msa0028450-mRNA-1:exon:15718;Parent=Msa0028450-mRNA-1
chr1_1 exon 53401974 53402563 53401974 ID=Msa0028450-mRNA-1:exon:15719;Parent=Msa0028450-mRNA-1
chr1_1 exon 53403145 53403451 53403145 ID=Msa0028450-mRNA-1:exon:15720;Parent=Msa0028450-mRNA-1
chr1_1 exon 53404742 53405126 53404742 ID=Msa0028450-mRNA-1:exon:15721;Parent=Msa0028450-mRNA-1
chr1_1 five_prime_UTR 53401755 53401848 53401755 ID=Msa0028450-mRNA-1:five_prime_utr;Parent=Msa0028450-mRNA-1
chr1_1 five_prime_UTR 53401974 53401982 53401974 ID=Msa0028450-mRNA-1:five_prime_utr;Parent=Msa0028450-mRNA-1
chr1_1 CDS 53401983 53402563 53401983 ID=Msa0028450-mRNA-1:cds;Parent=Msa0028450-mRNA-1
chr1_1 CDS 53403145 53403451 53403145 ID=Msa0028450-mRNA-1:cds;Parent=Msa0028450-mRNA-1
chr1_1 CDS 53404742 53404897 53404742 ID=Msa0028450-mRNA-1:cds;Parent=Msa0028450-mRNA-1
chr1_1 three_prime_UTR 53404898 53405126 53404898 ID=Msa0028450-mRNA-1:three_prime_utr;Parent=Msa0028450-mRNA-1
Gene Sequence

>Msa0028450

ATGGCTTCACTAATGCTCAGTGGAACTCAAAAGCTTACATTTTTGAATTGCAAAACCCAAAATGGAAATGGGTTTGGTTTCACAGGTTCAGATTTCAATGGTAAGAGCTTAATTTCCCCAAAAACAAGAATCAATGCTAAAATTAGGGTTTCCAATTTGAAGAGAAACATTGTAGTACGTTCCAGTTCTAGTGTATCATCTTCAAGACCAAGTTCACAACCTAGGTTTATACAACACAAAAAAGAAGCATTTTGGTTTTATAGGTTTCTTTCAATTGTGTATGACCATGTTATAAACCCTGGTCATTGGACTGAAGATATGAGAGATGAAGCTCTTGAACCAGCTGAACTTACTGATAGGAATATGCTTGTTGTTGATGTTGGTGGTGGTACTGGTTTCACTACATTGGGTATTGTTAAGCATGTCGATGCTAAGAATGTAACTATTCTTGATCAGTCACCTCATCAGCTTGCTAAAGCAAAGCAAAAGGAACCACTTAAGGATTGTAAAATTGTTGAAGGGGATGCTGAAGATTTACCCTTTCGAACTGATTATGCTGATAGATATGTGTCCGCTGGAAGCATTGAATACTGGCCGGATCCACAGCGTGGCATCAAGGAAGCATACAGGGTTTTGAAATTTGGGGGCAAAGCATGTTTAATTGGTCCTGTCTACCCGACATTTTGGTTGTCGCGTTTCTTCGCAGATGTTTGGATGCTTTTCCCTAAAGAAGAAGAGTATATCGAGTGGTTTACGAAGGCAGGGTTTAAGGATGTCCAGCTAAAAAGGATTGGCCCAAAATGGTATCGTGGAGTTCGCCGTCATGGCTTGATTATGGGTTGTTCTGTGACTGGTGTTAAGCCTGCATCTGGGGATTCTCCTTTGCAGCTTGGTCCAAAGGAAGAAGATGTTGAAAAGCCTGTAAATCCCTTTGTCTTCTTACTGCGCTTTGCCTTGGGCGTCCTAGCAGCTTCGTGGTTTGTATTGATTCCTATTTACATGTGGCTCAAAGATCAAATTGTTCCCAAAGATCAGCCAATCTGA

Protein sequence

>Msa0028450

MASLMLSGTQKLTFLNCKTQNGNGFGFTGSDFNGKSLISPKTRINAKIRVSNLKRNIVVRSSSSVSSSRPSSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAELTDRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIVEGDAEDLPFRTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKFGGKACLIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDVEKPVNPFVFLLRFALGVLAASWFVLIPIYMWLKDQIVPKDQPI*