Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225210 | XP_031255383.1 | 98.214 | 56 | 1 | 0 | 1 | 56 | 4 | 59 | 8.21e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225210 | sp|Q4R7Y5|DNJB6_MACFA | 70.370 | 54 | 16 | 0 | 3 | 56 | 2 | 55 | 5.78e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225210 | A0A392P7S1 | 100.000 | 56 | 0 | 0 | 1 | 56 | 1 | 56 | 4.02e-32 | 117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017320 | Msa0225210 | 0.813382 | 2.633732e-51 | -8.615850e-47 |
| Msa0064920 | Msa0225210 | 0.815582 | 8.585695e-52 | -8.615850e-47 |
| Msa0074750 | Msa0225210 | 0.814933 | 1.197016e-51 | -8.615850e-47 |
| Msa0081650 | Msa0225210 | 0.805876 | 1.080387e-49 | -8.615850e-47 |
| Msa0084430 | Msa0225210 | 0.801387 | 9.221192e-49 | -8.615850e-47 |
| Msa0126230 | Msa0225210 | 0.816806 | 4.572434e-52 | -8.615850e-47 |
| Msa0142500 | Msa0225210 | 0.810938 | 8.988064e-51 | -8.615850e-47 |
| Msa0174260 | Msa0225210 | 0.804993 | 1.654158e-49 | -8.615850e-47 |
| Msa0176330 | Msa0225210 | 0.804408 | 2.191168e-49 | -8.615850e-47 |
| Msa0218350 | Msa0225210 | 0.801004 | 1.104664e-48 | -8.615850e-47 |
| Msa0225210 | Msa0229360 | 0.807226 | 5.607006e-50 | -8.615850e-47 |
| Msa0225210 | Msa0232340 | 0.809365 | 1.961229e-50 | -8.615850e-47 |
| Msa0225210 | Msa0241740 | 0.805023 | 1.630930e-49 | -8.615850e-47 |
| Msa0225210 | Msa0265160 | 0.805053 | 1.607137e-49 | -8.615850e-47 |
| Msa0225210 | Msa0269520 | 0.803925 | 2.761695e-49 | -8.615850e-47 |
| Msa0225210 | Msa0271790 | 0.808284 | 3.341127e-50 | -8.615850e-47 |
| Msa0225210 | Msa0304100 | 0.805607 | 1.230275e-49 | -8.615850e-47 |
| Msa0225210 | Msa0304840 | 0.800891 | 1.164848e-48 | -8.615850e-47 |
| Msa0225210 | Msa0310430 | 0.802434 | 5.621970e-49 | -8.615850e-47 |
| Msa0225210 | Msa0319290 | 0.801755 | 7.752463e-49 | -8.615850e-47 |
| Msa0225210 | Msa0320430 | 0.803529 | 3.338260e-49 | -8.615850e-47 |
| Msa0225210 | Msa0340690 | 0.809461 | 1.870909e-50 | -8.615850e-47 |
| Msa0225210 | Msa0340710 | 0.808023 | 3.795803e-50 | -8.615850e-47 |
| Msa0225210 | Msa0387370 | 0.804962 | 1.678884e-49 | -8.615850e-47 |
| Msa0225210 | Msa0394690 | 0.803314 | 3.698761e-49 | -8.615850e-47 |
| Msa0225210 | Msa0395980 | 0.815449 | 9.192918e-52 | -8.615850e-47 |
| Msa0225210 | Msa0442310 | 0.801415 | 9.100816e-49 | -8.615850e-47 |
| Msa0225210 | Msa0455740 | 0.802733 | 4.877259e-49 | -8.615850e-47 |
| Msa0225210 | Msa0491000 | 0.810186 | 1.306368e-50 | -8.615850e-47 |
| Msa0225210 | Msa0518960 | 0.804446 | 2.152113e-49 | -8.615850e-47 |
| Msa0225210 | Msa0537770 | 0.806244 | 9.036634e-50 | -8.615850e-47 |
| Msa0225210 | Msa0573040 | 0.803950 | 2.729447e-49 | -8.615850e-47 |
| Msa0225210 | Msa0582280 | 0.837314 | 5.592371e-57 | -8.615850e-47 |
| Msa0225210 | Msa0587190 | 0.815958 | 7.078921e-52 | -8.615850e-47 |
| Msa0225210 | Msa0588220 | 0.811666 | 6.246537e-51 | -8.615850e-47 |
| Msa0225210 | Msa0594200 | 0.818089 | 2.351361e-52 | -8.615850e-47 |
| Msa0225210 | Msa0597000 | 0.804566 | 2.031629e-49 | -8.615850e-47 |
| Msa0225210 | Msa0600450 | 0.801933 | 7.127435e-49 | -8.615850e-47 |
| Msa0225210 | Msa0615220 | 0.807507 | 4.886635e-50 | -8.615850e-47 |
| Msa0225210 | Msa0640940 | 0.815217 | 1.034967e-51 | -8.615850e-47 |
| Msa0225210 | Msa0679360 | 0.802158 | 6.407698e-49 | -8.615850e-47 |
| Msa0225210 | Msa0679550 | 0.812867 | 3.416202e-51 | -8.615850e-47 |
| Msa0225210 | Msa0686080 | 0.802161 | 6.397639e-49 | -8.615850e-47 |
| Msa0225210 | Msa0689420 | 0.807596 | 4.678805e-50 | -8.615850e-47 |
| Msa0225210 | Msa0689760 | 0.813766 | 2.167656e-51 | -8.615850e-47 |
| Msa0225210 | Msa0716860 | 0.815008 | 1.152048e-51 | -8.615850e-47 |
| Msa0225210 | Msa0743530 | 0.814496 | 1.495996e-51 | -8.615850e-47 |
| Msa0225210 | Msa0749400 | 0.807522 | 4.851591e-50 | -8.615850e-47 |
| Msa0225210 | Msa0756380 | 0.801724 | 7.867525e-49 | -8.615850e-47 |
| Msa0225210 | Msa0757800 | 0.804355 | 2.247674e-49 | -8.615850e-47 |
| Msa0225210 | Msa0789560 | 0.826278 | 2.961922e-54 | -8.615850e-47 |
| Msa0225210 | Msa0870650 | 0.808659 | 2.777897e-50 | -8.615850e-47 |
| Msa0225210 | Msa0892570 | 0.802640 | 5.096950e-49 | -8.615850e-47 |
| Msa0225210 | Msa1036740 | 0.800043 | 1.734322e-48 | -8.615850e-47 |
| Msa0225210 | Msa1077070 | 0.817449 | 3.278995e-52 | -8.615850e-47 |
| Msa0225210 | Msa1113590 | 0.812352 | 4.426852e-51 | -8.615850e-47 |
| Msa0225210 | Msa1122780 | 0.824468 | 7.939846e-54 | -8.615850e-47 |
| Msa0225210 | Msa1190970 | 0.827439 | 1.563754e-54 | -8.615850e-47 |
| Msa0225210 | Msa1201640 | 0.813965 | 1.959455e-51 | -8.615850e-47 |
| Msa0225210 | Msa1205480 | 0.825170 | 5.423725e-54 | -8.615850e-47 |
| Msa0225210 | Msa1205590 | 0.812898 | 3.363030e-51 | -8.615850e-47 |
| Msa0225210 | Msa1211340 | 0.817872 | 2.632064e-52 | -8.615850e-47 |
| Msa0225210 | Msa1244640 | 0.827208 | 1.776188e-54 | -8.615850e-47 |
| Msa0225210 | Msa1250110 | 0.801214 | 1.000513e-48 | -8.615850e-47 |
| Msa0225210 | Msa1250730 | 0.810544 | 1.093696e-50 | -8.615850e-47 |
| Msa0225210 | Msa1258370 | 0.803535 | 3.327704e-49 | -8.615850e-47 |
| Msa0225210 | Msa1259640 | 0.820317 | 7.310906e-53 | -8.615850e-47 |
| Msa0225210 | Msa1293590 | 0.831979 | 1.227529e-55 | -8.615850e-47 |
| Msa0225210 | Msa1296300 | 0.817114 | 3.900141e-52 | -8.615850e-47 |
| Msa0225210 | Msa1297530 | 0.818078 | 2.365000e-52 | -8.615850e-47 |
| Msa0225210 | Msa1304810 | 0.811822 | 5.777028e-51 | -8.615850e-47 |
| Msa0225210 | Msa1307550 | 0.807578 | 4.720182e-50 | -8.615850e-47 |
| Msa0225210 | Msa1329790 | 0.824690 | 7.041101e-54 | -8.615850e-47 |
| Msa0225210 | Msa1329800 | 0.803029 | 4.235851e-49 | -8.615850e-47 |
| Msa0225210 | Msa1336040 | 0.804489 | 2.108358e-49 | -8.615850e-47 |
| Msa0225210 | Msa1372290 | 0.807001 | 6.256601e-50 | -8.615850e-47 |
| Msa0225210 | Msa1385350 | 0.816560 | 5.192428e-52 | -8.615850e-47 |
| Msa0225210 | Msa1393800 | 0.808447 | 3.083835e-50 | -8.615850e-47 |
| Msa0225210 | Msa1416260 | 0.807084 | 6.008850e-50 | -8.615850e-47 |
| Msa0225210 | Msa1420250 | 0.812774 | 3.580125e-51 | -8.615850e-47 |
| Msa0225210 | Msa1426910 | 0.845744 | 3.354250e-59 | -8.615850e-47 |
| Msa0225210 | Msa1439710 | 0.811989 | 5.312168e-51 | -8.615850e-47 |
| Msa0225210 | Msa1446080 | 0.805936 | 1.049275e-49 | -8.615850e-47 |
| Msa0225210 | Msa1463600 | 0.803736 | 3.023647e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225210 | MtrunA17_Chr2g0324921 | 100.000 | 56 | 0 | 0 | 1 | 56 | 1 | 56 | 2.11e-32 | 115 |
| Msa0225210 | MtrunA17_Chr4g0006391 | 92.857 | 56 | 4 | 0 | 1 | 56 | 1 | 56 | 9.52e-30 | 108 |
| Msa0225210 | MtrunA17_Chr3g0138471 | 85.714 | 56 | 8 | 0 | 1 | 56 | 1 | 56 | 2.82e-29 | 106 |
| Msa0225210 | MtrunA17_Chr4g0040501 | 86.207 | 58 | 8 | 0 | 1 | 58 | 1 | 58 | 1.30e-28 | 105 |
| Msa0225210 | MtrunA17_Chr2g0282761 | 76.786 | 56 | 13 | 0 | 1 | 56 | 1 | 56 | 3.31e-26 | 99.0 |
| Msa0225210 | MtrunA17_Chr2g0282741 | 80.357 | 56 | 11 | 0 | 1 | 56 | 1 | 56 | 1.88e-25 | 97.1 |
| Msa0225210 | MtrunA17_Chr7g0263971 | 52.830 | 53 | 25 | 0 | 4 | 56 | 369 | 421 | 3.65e-16 | 72.0 |
| Msa0225210 | MtrunA17_Chr5g0415731 | 56.667 | 60 | 19 | 1 | 4 | 56 | 5 | 64 | 2.41e-15 | 66.6 |
| Msa0225210 | MtrunA17_Chr7g0271891 | 44.286 | 70 | 36 | 1 | 5 | 71 | 17 | 86 | 2.64e-15 | 67.0 |
| Msa0225210 | MtrunA17_Chr7g0269841 | 61.538 | 52 | 19 | 1 | 5 | 56 | 27 | 77 | 7.34e-15 | 68.2 |
| Msa0225210 | MtrunA17_Chr4g0021141 | 49.057 | 53 | 26 | 1 | 4 | 56 | 22 | 73 | 6.68e-13 | 60.1 |
| Msa0225210 | MtrunA17_Chr5g0427221 | 49.057 | 53 | 26 | 1 | 4 | 56 | 48 | 99 | 2.47e-11 | 56.2 |
| Msa0225210 | MtrunA17_Chr6g0478651 | 52.727 | 55 | 24 | 1 | 2 | 56 | 66 | 118 | 8.04e-11 | 57.0 |
| Msa0225210 | MtrunA17_Chr5g0414471 | 42.647 | 68 | 38 | 1 | 4 | 71 | 25 | 91 | 8.53e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225210 | AT3G08910.1 | 96.429 | 56 | 2 | 0 | 1 | 56 | 1 | 56 | 1.97e-33 | 117 |
| Msa0225210 | AT4G28480.2 | 92.857 | 56 | 4 | 0 | 1 | 56 | 1 | 56 | 8.84e-32 | 112 |
| Msa0225210 | AT5G01390.3 | 89.286 | 56 | 6 | 0 | 1 | 56 | 1 | 56 | 1.81e-31 | 110 |
| Msa0225210 | AT5G01390.4 | 89.286 | 56 | 6 | 0 | 1 | 56 | 1 | 56 | 2.23e-31 | 110 |
| Msa0225210 | AT4G28480.1 | 92.857 | 56 | 4 | 0 | 1 | 56 | 1 | 56 | 2.56e-31 | 112 |
| Msa0225210 | AT5G01390.2 | 89.286 | 56 | 6 | 0 | 1 | 56 | 1 | 56 | 4.75e-31 | 110 |
| Msa0225210 | AT5G01390.1 | 89.286 | 56 | 6 | 0 | 1 | 56 | 1 | 56 | 9.85e-31 | 111 |
| Msa0225210 | AT2G20560.1 | 89.286 | 56 | 6 | 0 | 1 | 56 | 1 | 56 | 2.98e-30 | 109 |
| Msa0225210 | AT5G25530.2 | 80.357 | 56 | 11 | 0 | 1 | 56 | 1 | 56 | 1.82e-27 | 102 |
| Msa0225210 | AT1G10350.1 | 80.357 | 56 | 11 | 0 | 1 | 56 | 1 | 56 | 2.11e-27 | 102 |
| Msa0225210 | AT5G25530.1 | 80.000 | 55 | 11 | 0 | 1 | 55 | 1 | 55 | 1.06e-26 | 100 |
| Msa0225210 | AT1G59725.1 | 75.439 | 57 | 13 | 1 | 1 | 56 | 1 | 57 | 1.23e-23 | 92.4 |
| Msa0225210 | AT3G47940.1 | 71.930 | 57 | 15 | 1 | 1 | 56 | 1 | 57 | 3.12e-21 | 85.9 |
| Msa0225210 | AT5G03160.1 | 52.830 | 53 | 25 | 0 | 4 | 56 | 370 | 422 | 3.27e-15 | 69.7 |
| Msa0225210 | AT1G56300.2 | 50.909 | 55 | 24 | 1 | 5 | 56 | 14 | 68 | 9.89e-14 | 62.4 |
| Msa0225210 | AT1G56300.1 | 50.909 | 55 | 24 | 1 | 5 | 56 | 14 | 68 | 1.19e-13 | 62.8 |
| Msa0225210 | AT3G62600.1 | 54.545 | 55 | 24 | 1 | 2 | 56 | 24 | 77 | 8.86e-13 | 62.8 |
| Msa0225210 | AT5G16650.1 | 50.943 | 53 | 25 | 1 | 4 | 56 | 11 | 62 | 1.96e-12 | 59.3 |
| Msa0225210 | AT5G16650.2 | 50.943 | 53 | 25 | 1 | 4 | 56 | 11 | 62 | 2.27e-12 | 59.7 |
| Msa0225210 | AT3G17830.1 | 56.364 | 55 | 22 | 1 | 2 | 56 | 61 | 113 | 1.32e-11 | 59.7 |
| Msa0225210 | AT2G41000.2 | 44.828 | 58 | 28 | 1 | 3 | 56 | 2 | 59 | 1.37e-11 | 58.5 |
| Msa0225210 | AT2G41000.1 | 44.828 | 58 | 28 | 1 | 3 | 56 | 2 | 59 | 2.14e-11 | 57.4 |
Find 19 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAGATTTGCTTAAATT+TGG | 0.199073 | 2_1:-75299996 | None:intergenic |
| TTTCTTCAAGTCATCGTCTT+TGG | 0.326757 | 2_1:-75299906 | None:intergenic |
| TTGTTATTAGGGTTCTTATC+AGG | 0.352145 | 2_1:-75299959 | None:intergenic |
| TGACTACTACAAGCTTCTTC+AGG | 0.376848 | 2_1:+75299871 | Msa0225210:CDS |
| GCCGCAAAATCGCAGAAAAT+CGG | 0.395524 | 2_1:+75299784 | Msa0225210:five_prime_UTR |
| CTTATCAGGATGCCACTTCA+TGG | 0.411951 | 2_1:-75299945 | None:intergenic |
| ACAAGCTTCTTCAGGTTGAT+CGG | 0.516804 | 2_1:+75299879 | Msa0225210:CDS |
| AGAAGGGCAACAACCAGCCA+TGG | 0.552284 | 2_1:+75299844 | Msa0225210:exon |
| TAGTAGTCAACACCCATGGC+TGG | 0.554236 | 2_1:-75299857 | None:intergenic |
| CTGTCGAAGAGAAAGAGAGA+AGG | 0.555619 | 2_1:+75299827 | Msa0225210:five_prime_UTR |
| ACAGAAAACTCGCCATGAAG+TGG | 0.563345 | 2_1:+75299933 | Msa0225210:CDS |
| TGTCGAAGAGAAAGAGAGAA+GGG | 0.570583 | 2_1:+75299828 | Msa0225210:five_prime_UTR |
| GAAGGGCAACAACCAGCCAT+GGG | 0.607689 | 2_1:+75299845 | Msa0225210:exon |
| GCTTAGGTACAATACAATCG+TGG | 0.609230 | 2_1:+75299704 | None:intergenic |
| GGAGCAGAAGACTCAACAGC+AGG | 0.615251 | 2_1:-75300546 | None:intergenic |
| CTTAGGTACAATACAATCGT+GGG | 0.615629 | 2_1:+75299705 | None:intergenic |
| TTGAGTCTTCTGCTCCTCAG+TGG | 0.624600 | 2_1:+75300553 | Msa0225210:CDS |
| CTTGTAGTAGTCAACACCCA+TGG | 0.649177 | 2_1:-75299861 | None:intergenic |
| AAGGGAGATGCAGACCACTG+AGG | 0.731299 | 2_1:-75300567 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATGTAAGTTTTTTTTAA+AGG | + | chr2_1:75300023-75300042 | Msa0225210:intron | 15.0% |
| !!! | TGATGTAAGTTTTTTTTAAA+GGG | + | chr2_1:75300024-75300043 | Msa0225210:intron | 15.0% |
| !!! | CTTAAATTTTCAATTTTTAG+TGG | + | chr2_1:75300050-75300069 | Msa0225210:intron | 15.0% |
| !!! | ATGATGTAAGTTTTTTTTAA+AGG | + | chr2_1:75300023-75300042 | Msa0225210:intron | 15.0% |
| !!! | TGATGTAAGTTTTTTTTAAA+GGG | + | chr2_1:75300024-75300043 | Msa0225210:intron | 15.0% |
| !!! | CTTAAATTTTCAATTTTTAG+TGG | + | chr2_1:75300050-75300069 | Msa0225210:intron | 15.0% |
| !!! | GGAATTTGTTTTTTGTTATT+AGG | + | chr2_1:75300138-75300157 | Msa0225210:intron | 20.0% |
| !! | AGAAAAAACTTGATGAAATT+TGG | - | chr2_1:75300329-75300348 | None:intergenic | 20.0% |
| !!! | CAATTTCTAGAAAAAGAAAA+GGG | - | chr2_1:75300588-75300607 | None:intergenic | 20.0% |
| !!! | ACAATTTCTAGAAAAAGAAA+AGG | - | chr2_1:75300589-75300608 | None:intergenic | 20.0% |
| !!! | GGAATTTGTTTTTTGTTATT+AGG | + | chr2_1:75300138-75300157 | Msa0225210:intron | 20.0% |
| !! | AGAAAAAACTTGATGAAATT+TGG | - | chr2_1:75300329-75300348 | None:intergenic | 20.0% |
| !!! | CAATTTCTAGAAAAAGAAAA+GGG | - | chr2_1:75300588-75300607 | None:intergenic | 20.0% |
| !!! | ACAATTTCTAGAAAAAGAAA+AGG | - | chr2_1:75300589-75300608 | None:intergenic | 20.0% |
| !!! | GTTCAAGAAATTTTAACGTT+GGG | - | chr2_1:75299745-75299764 | None:intergenic | 25.0% |
| !!! | AGTTCAAGAAATTTTAACGT+TGG | - | chr2_1:75299746-75299765 | None:intergenic | 25.0% |
| !!! | CAGCTTCTTTTTTGTTATTA+GGG | - | chr2_1:75299973-75299992 | None:intergenic | 25.0% |
| !!! | TCAGCTTCTTTTTTGTTATT+AGG | - | chr2_1:75299974-75299993 | None:intergenic | 25.0% |
| !!! | TTCTGAGATTTGCTTAAATT+TGG | - | chr2_1:75299999-75300018 | None:intergenic | 25.0% |
| !!! | AAAGTTTTGTTTTTTGCATC+TGG | + | chr2_1:75300095-75300114 | Msa0225210:intron | 25.0% |
| !!! | AAGTTTTGTTTTTTGCATCT+GGG | + | chr2_1:75300096-75300115 | Msa0225210:intron | 25.0% |
| ! | AAACAAACTAAGTAGTTCAA+TGG | + | chr2_1:75300401-75300420 | Msa0225210:intron | 25.0% |
| ! | AGAAGATATTACCATTTGTT+TGG | + | chr2_1:75300435-75300454 | Msa0225210:intron | 25.0% |
| !! | TTTTTGTGTTCTATCATTGT+TGG | - | chr2_1:75300613-75300632 | None:intergenic | 25.0% |
| !!! | GTTCAAGAAATTTTAACGTT+GGG | - | chr2_1:75299745-75299764 | None:intergenic | 25.0% |
| !!! | AGTTCAAGAAATTTTAACGT+TGG | - | chr2_1:75299746-75299765 | None:intergenic | 25.0% |
| !!! | CAGCTTCTTTTTTGTTATTA+GGG | - | chr2_1:75299973-75299992 | None:intergenic | 25.0% |
| !!! | TCAGCTTCTTTTTTGTTATT+AGG | - | chr2_1:75299974-75299993 | None:intergenic | 25.0% |
| !!! | TTCTGAGATTTGCTTAAATT+TGG | - | chr2_1:75299999-75300018 | None:intergenic | 25.0% |
| !!! | AAAGTTTTGTTTTTTGCATC+TGG | + | chr2_1:75300095-75300114 | Msa0225210:intron | 25.0% |
| !!! | AAGTTTTGTTTTTTGCATCT+GGG | + | chr2_1:75300096-75300115 | Msa0225210:intron | 25.0% |
| ! | AAACAAACTAAGTAGTTCAA+TGG | + | chr2_1:75300401-75300420 | Msa0225210:intron | 25.0% |
| ! | AGAAGATATTACCATTTGTT+TGG | + | chr2_1:75300435-75300454 | Msa0225210:intron | 25.0% |
| !! | TTTTTGTGTTCTATCATTGT+TGG | - | chr2_1:75300613-75300632 | None:intergenic | 25.0% |
| ! | TTGTTATTAGGGTTCTTATC+AGG | - | chr2_1:75299962-75299981 | None:intergenic | 30.0% |
| AGAGCTGTTTATGATCAATA+TGG | + | chr2_1:75300181-75300200 | Msa0225210:intron | 30.0% | |
| GAGCTGTTTATGATCAATAT+GGG | + | chr2_1:75300182-75300201 | Msa0225210:intron | 30.0% | |
| AGCTGTTTATGATCAATATG+GGG | + | chr2_1:75300183-75300202 | Msa0225210:intron | 30.0% | |
| CTAATACAATTCAGCAAGTA+GGG | - | chr2_1:75300499-75300518 | None:intergenic | 30.0% | |
| ! | TTGTTATTAGGGTTCTTATC+AGG | - | chr2_1:75299962-75299981 | None:intergenic | 30.0% |
| AGAGCTGTTTATGATCAATA+TGG | + | chr2_1:75300181-75300200 | Msa0225210:intron | 30.0% | |
| GAGCTGTTTATGATCAATAT+GGG | + | chr2_1:75300182-75300201 | Msa0225210:intron | 30.0% | |
| AGCTGTTTATGATCAATATG+GGG | + | chr2_1:75300183-75300202 | Msa0225210:intron | 30.0% | |
| CTAATACAATTCAGCAAGTA+GGG | - | chr2_1:75300499-75300518 | None:intergenic | 30.0% | |
| ! | CTTTCTCTTCGACAGTTTTA+CGG | - | chr2_1:75299822-75299841 | None:intergenic | 35.0% |
| TTTCTTCAAGTCATCGTCTT+TGG | - | chr2_1:75299909-75299928 | None:intergenic | 35.0% | |
| TATGATCAATATGGGGAAGA+TGG | + | chr2_1:75300190-75300209 | Msa0225210:intron | 35.0% | |
| TGTCATGAGAACCAAACAAA+TGG | - | chr2_1:75300449-75300468 | None:intergenic | 35.0% | |
| TCAAATAATCCAGTACTCCA+TGG | + | chr2_1:75300470-75300489 | Msa0225210:intron | 35.0% | |
| GCTAATACAATTCAGCAAGT+AGG | - | chr2_1:75300500-75300519 | None:intergenic | 35.0% | |
| ! | CTTTCTCTTCGACAGTTTTA+CGG | - | chr2_1:75299822-75299841 | None:intergenic | 35.0% |
| TTTCTTCAAGTCATCGTCTT+TGG | - | chr2_1:75299909-75299928 | None:intergenic | 35.0% | |
| TATGATCAATATGGGGAAGA+TGG | + | chr2_1:75300190-75300209 | Msa0225210:intron | 35.0% | |
| TGTCATGAGAACCAAACAAA+TGG | - | chr2_1:75300449-75300468 | None:intergenic | 35.0% | |
| TCAAATAATCCAGTACTCCA+TGG | + | chr2_1:75300470-75300489 | Msa0225210:intron | 35.0% | |
| GCTAATACAATTCAGCAAGT+AGG | - | chr2_1:75300500-75300519 | None:intergenic | 35.0% | |
| ! | TTTTGCGGCGAATTTGTGAA+GGG | - | chr2_1:75299773-75299792 | None:intergenic | 40.0% |
| ! | ATTTTGCGGCGAATTTGTGA+AGG | - | chr2_1:75299774-75299793 | None:intergenic | 40.0% |
| ! | TCCGATTTTCTGCGATTTTG+CGG | - | chr2_1:75299788-75299807 | None:intergenic | 40.0% |
| TGTCGAAGAGAAAGAGAGAA+GGG | + | chr2_1:75299828-75299847 | Msa0225210:five_prime_UTR | 40.0% | |
| TGACTACTACAAGCTTCTTC+AGG | + | chr2_1:75299871-75299890 | Msa0225210:CDS | 40.0% | |
| !! | ACAAGCTTCTTCAGGTTGAT+CGG | + | chr2_1:75299879-75299898 | Msa0225210:CDS | 40.0% |
| ! | TTTTGCGGCGAATTTGTGAA+GGG | - | chr2_1:75299773-75299792 | None:intergenic | 40.0% |
| ! | ATTTTGCGGCGAATTTGTGA+AGG | - | chr2_1:75299774-75299793 | None:intergenic | 40.0% |
| ! | TCCGATTTTCTGCGATTTTG+CGG | - | chr2_1:75299788-75299807 | None:intergenic | 40.0% |
| TGTCGAAGAGAAAGAGAGAA+GGG | + | chr2_1:75299828-75299847 | Msa0225210:five_prime_UTR | 40.0% | |
| TGACTACTACAAGCTTCTTC+AGG | + | chr2_1:75299871-75299890 | Msa0225210:CDS | 40.0% | |
| !! | ACAAGCTTCTTCAGGTTGAT+CGG | + | chr2_1:75299879-75299898 | Msa0225210:CDS | 40.0% |
| GCCGCAAAATCGCAGAAAAT+CGG | + | chr2_1:75299784-75299803 | Msa0225210:five_prime_UTR | 45.0% | |
| ! | GACAGTTTTACGGCACTTTC+TGG | - | chr2_1:75299812-75299831 | None:intergenic | 45.0% |
| CTGTCGAAGAGAAAGAGAGA+AGG | + | chr2_1:75299827-75299846 | Msa0225210:five_prime_UTR | 45.0% | |
| CTTGTAGTAGTCAACACCCA+TGG | - | chr2_1:75299864-75299883 | None:intergenic | 45.0% | |
| ACAGAAAACTCGCCATGAAG+TGG | + | chr2_1:75299933-75299952 | Msa0225210:CDS | 45.0% | |
| ! | CTTATCAGGATGCCACTTCA+TGG | - | chr2_1:75299948-75299967 | None:intergenic | 45.0% |
| !!! | TCTGGGTCATGCTGATTTTG+TGG | + | chr2_1:75300113-75300132 | Msa0225210:intron | 45.0% |
| !!! | GGTCATGCTGATTTTGTGGT+GGG | + | chr2_1:75300117-75300136 | Msa0225210:intron | 45.0% |
| TCATACCTTGAGCCAACAAC+AGG | + | chr2_1:75300521-75300540 | Msa0225210:intron | 45.0% | |
| GCCGCAAAATCGCAGAAAAT+CGG | + | chr2_1:75299784-75299803 | Msa0225210:five_prime_UTR | 45.0% | |
| ! | GACAGTTTTACGGCACTTTC+TGG | - | chr2_1:75299812-75299831 | None:intergenic | 45.0% |
| CTGTCGAAGAGAAAGAGAGA+AGG | + | chr2_1:75299827-75299846 | Msa0225210:five_prime_UTR | 45.0% | |
| CTTGTAGTAGTCAACACCCA+TGG | - | chr2_1:75299864-75299883 | None:intergenic | 45.0% | |
| ACAGAAAACTCGCCATGAAG+TGG | + | chr2_1:75299933-75299952 | Msa0225210:CDS | 45.0% | |
| ! | CTTATCAGGATGCCACTTCA+TGG | - | chr2_1:75299948-75299967 | None:intergenic | 45.0% |
| !!! | TCTGGGTCATGCTGATTTTG+TGG | + | chr2_1:75300113-75300132 | Msa0225210:intron | 45.0% |
| !!! | GGTCATGCTGATTTTGTGGT+GGG | + | chr2_1:75300117-75300136 | Msa0225210:intron | 45.0% |
| TCATACCTTGAGCCAACAAC+AGG | + | chr2_1:75300521-75300540 | Msa0225210:intron | 45.0% | |
| TAGTAGTCAACACCCATGGC+TGG | - | chr2_1:75299860-75299879 | None:intergenic | 50.0% | |
| !!! | GGGTCATGCTGATTTTGTGG+TGG | + | chr2_1:75300116-75300135 | Msa0225210:intron | 50.0% |
| TTCAGCAAGTAGGGAGTCCA+TGG | - | chr2_1:75300490-75300509 | None:intergenic | 50.0% | |
| !! | AGGAACCTGTTGTTGGCTCA+AGG | - | chr2_1:75300529-75300548 | None:intergenic | 50.0% |
| CAACAGCAGGAACCTGTTGT+TGG | - | chr2_1:75300536-75300555 | None:intergenic | 50.0% | |
| TTGAGTCTTCTGCTCCTCAG+TGG | + | chr2_1:75300553-75300572 | Msa0225210:CDS | 50.0% | |
| TAGTAGTCAACACCCATGGC+TGG | - | chr2_1:75299860-75299879 | None:intergenic | 50.0% | |
| !!! | GGGTCATGCTGATTTTGTGG+TGG | + | chr2_1:75300116-75300135 | Msa0225210:intron | 50.0% |
| TTCAGCAAGTAGGGAGTCCA+TGG | - | chr2_1:75300490-75300509 | None:intergenic | 50.0% | |
| !! | AGGAACCTGTTGTTGGCTCA+AGG | - | chr2_1:75300529-75300548 | None:intergenic | 50.0% |
| CAACAGCAGGAACCTGTTGT+TGG | - | chr2_1:75300536-75300555 | None:intergenic | 50.0% | |
| TTGAGTCTTCTGCTCCTCAG+TGG | + | chr2_1:75300553-75300572 | Msa0225210:CDS | 50.0% | |
| AGAAGGGCAACAACCAGCCA+TGG | + | chr2_1:75299844-75299863 | Msa0225210:exon | 55.0% | |
| GAAGGGCAACAACCAGCCAT+GGG | + | chr2_1:75299845-75299864 | Msa0225210:exon | 55.0% | |
| GTAGGGAGTCCATGGAGTAC+TGG | - | chr2_1:75300482-75300501 | None:intergenic | 55.0% | |
| GGAGCAGAAGACTCAACAGC+AGG | - | chr2_1:75300549-75300568 | None:intergenic | 55.0% | |
| AAGGGAGATGCAGACCACTG+AGG | - | chr2_1:75300570-75300589 | None:intergenic | 55.0% | |
| AGAAGGGCAACAACCAGCCA+TGG | + | chr2_1:75299844-75299863 | Msa0225210:exon | 55.0% | |
| GAAGGGCAACAACCAGCCAT+GGG | + | chr2_1:75299845-75299864 | Msa0225210:exon | 55.0% | |
| GTAGGGAGTCCATGGAGTAC+TGG | - | chr2_1:75300482-75300501 | None:intergenic | 55.0% | |
| GGAGCAGAAGACTCAACAGC+AGG | - | chr2_1:75300549-75300568 | None:intergenic | 55.0% | |
| AAGGGAGATGCAGACCACTG+AGG | - | chr2_1:75300570-75300589 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 75299707 | 75300674 | 75299707 | ID=Msa0225210;Name=Msa0225210 |
| chr2_1 | mRNA | 75299707 | 75300674 | 75299707 | ID=Msa0225210-mRNA-1;Parent=Msa0225210;Name=Msa0225210-mRNA-1;_AED=0.21;_eAED=0.21;_QI=156|0|0.5|0.5|1|1|2|0|98 |
| chr2_1 | exon | 75299707 | 75300027 | 75299707 | ID=Msa0225210-mRNA-1:exon:22505;Parent=Msa0225210-mRNA-1 |
| chr2_1 | exon | 75300543 | 75300674 | 75300543 | ID=Msa0225210-mRNA-1:exon:22506;Parent=Msa0225210-mRNA-1 |
| chr2_1 | five_prime_UTR | 75299707 | 75299862 | 75299707 | ID=Msa0225210-mRNA-1:five_prime_utr;Parent=Msa0225210-mRNA-1 |
| chr2_1 | CDS | 75299863 | 75300027 | 75299863 | ID=Msa0225210-mRNA-1:cds;Parent=Msa0225210-mRNA-1 |
| chr2_1 | CDS | 75300543 | 75300674 | 75300543 | ID=Msa0225210-mRNA-1:cds;Parent=Msa0225210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
