Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416630 | sp|Q6PGS5|TLC4B_XENLA | 28.922 | 204 | 131 | 7 | 1 | 198 | 54 | 249 | 6.23e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416630 | G7K374 | 100.000 | 198 | 0 | 0 | 1 | 198 | 77 | 274 | 1.39e-140 | 402 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa1416630 | 0.810289 | 1.241096e-50 | -8.615850e-47 |
| Msa0026910 | Msa1416630 | 0.805139 | 1.541953e-49 | -8.615850e-47 |
| Msa0084720 | Msa1416630 | 0.819287 | 1.257198e-52 | -8.615850e-47 |
| Msa0095560 | Msa1416630 | 0.809365 | 1.961797e-50 | -8.615850e-47 |
| Msa1353470 | Msa1416630 | 0.821965 | 3.049226e-53 | -8.615850e-47 |
| Msa1359040 | Msa1416630 | 0.800363 | 1.492766e-48 | -8.615850e-47 |
| Msa1372760 | Msa1416630 | 0.806662 | 7.376183e-50 | -8.615850e-47 |
| Msa1379850 | Msa1416630 | 0.813652 | 2.296090e-51 | -8.615850e-47 |
| Msa1392260 | Msa1416630 | 0.804157 | 2.472212e-49 | -8.615850e-47 |
| Msa1416630 | Msa1451620 | -0.804492 | 2.104804e-49 | -8.615850e-47 |
| Msa1416630 | Msa1466540 | 0.812266 | 4.623433e-51 | -8.615850e-47 |
| Msa0607540 | Msa1416630 | 0.810149 | 1.330717e-50 | -8.615850e-47 |
| Msa0626090 | Msa1416630 | 0.810343 | 1.208110e-50 | -8.615850e-47 |
| Msa0726040 | Msa1416630 | 0.801945 | 7.087083e-49 | -8.615850e-47 |
| Msa0750240 | Msa1416630 | 0.803741 | 3.015806e-49 | -8.615850e-47 |
| Msa0766630 | Msa1416630 | 0.820124 | 8.095604e-53 | -8.615850e-47 |
| Msa0786990 | Msa1416630 | 0.826291 | 2.940148e-54 | -8.615850e-47 |
| Msa0800210 | Msa1416630 | 0.802721 | 4.903551e-49 | -8.615850e-47 |
| Msa0807030 | Msa1416630 | 0.804475 | 2.122588e-49 | -8.615850e-47 |
| Msa0830510 | Msa1416630 | 0.800774 | 1.230655e-48 | -8.615850e-47 |
| Msa0131770 | Msa1416630 | 0.814710 | 1.341007e-51 | -8.615850e-47 |
| Msa0206010 | Msa1416630 | 0.807685 | 4.479541e-50 | -8.615850e-47 |
| Msa0210450 | Msa1416630 | 0.810368 | 1.193602e-50 | -8.615850e-47 |
| Msa0220740 | Msa1416630 | 0.828673 | 7.888574e-55 | -8.615850e-47 |
| Msa0233300 | Msa1416630 | 0.802860 | 4.591391e-49 | -8.615850e-47 |
| Msa0237310 | Msa1416630 | 0.808563 | 2.912797e-50 | -8.615850e-47 |
| Msa1284680 | Msa1416630 | 0.800320 | 1.522920e-48 | -8.615850e-47 |
| Msa1291660 | Msa1416630 | 0.810662 | 1.030853e-50 | -8.615850e-47 |
| Msa1318990 | Msa1416630 | 0.809066 | 2.273606e-50 | -8.615850e-47 |
| Msa0376590 | Msa1416630 | 0.811251 | 7.688570e-51 | -8.615850e-47 |
| Msa0379640 | Msa1416630 | 0.804037 | 2.618230e-49 | -8.615850e-47 |
| Msa0436370 | Msa1416630 | 0.812712 | 3.693665e-51 | -8.615850e-47 |
| Msa0439970 | Msa1416630 | 0.803801 | 2.930993e-49 | -8.615850e-47 |
| Msa0458440 | Msa1416630 | 0.814516 | 1.480538e-51 | -8.615850e-47 |
| Msa1030970 | Msa1416630 | 0.811733 | 6.040994e-51 | -8.615850e-47 |
| Msa1075220 | Msa1416630 | -0.809983 | 1.444931e-50 | -8.615850e-47 |
| Msa1082500 | Msa1416630 | 0.813087 | 3.055954e-51 | -8.615850e-47 |
| Msa0264780 | Msa1416630 | 0.802687 | 4.983390e-49 | -8.615850e-47 |
| Msa0274730 | Msa1416630 | 0.811296 | 7.517599e-51 | -8.615850e-47 |
| Msa0287410 | Msa1416630 | 0.808613 | 2.841963e-50 | -8.615850e-47 |
| Msa0292930 | Msa1416630 | 0.806655 | 7.404288e-50 | -8.615850e-47 |
| Msa0315530 | Msa1416630 | 0.809438 | 1.892166e-50 | -8.615850e-47 |
| Msa0326110 | Msa1416630 | 0.821360 | 4.208084e-53 | -8.615850e-47 |
| Msa1121490 | Msa1416630 | 0.811269 | 7.617314e-51 | -8.615850e-47 |
| Msa1188710 | Msa1416630 | 0.816878 | 4.405861e-52 | -8.615850e-47 |
| Msa1192990 | Msa1416630 | 0.803724 | 3.040424e-49 | -8.615850e-47 |
| Msa0484780 | Msa1416630 | 0.827489 | 1.521269e-54 | -8.615850e-47 |
| Msa0516370 | Msa1416630 | 0.809364 | 1.962804e-50 | -8.615850e-47 |
| Msa0572480 | Msa1416630 | 0.823191 | 1.581708e-53 | -8.615850e-47 |
| Msa0903700 | Msa1416630 | 0.802102 | 6.577887e-49 | -8.615850e-47 |
| Msa0925870 | Msa1416630 | 0.809124 | 2.209481e-50 | -8.615850e-47 |
| Msa0969450 | Msa1416630 | 0.814131 | 1.800932e-51 | -8.615850e-47 |
| Msa0969520 | Msa1416630 | 0.816934 | 4.279997e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416630 | MtrunA17_Chr5g0442461 | 100.000 | 198 | 0 | 0 | 1 | 198 | 77 | 274 | 2.69e-144 | 402 |
| Msa1416630 | MtrunA17_Chr3g0095631 | 87.200 | 125 | 13 | 2 | 35 | 157 | 5 | 128 | 6.86e-73 | 216 |
| Msa1416630 | MtrunA17_Chr3g0108871 | 51.777 | 197 | 95 | 0 | 2 | 198 | 65 | 261 | 7.30e-70 | 213 |
| Msa1416630 | MtrunA17_Chr3g0095641 | 78.261 | 46 | 10 | 0 | 1 | 46 | 77 | 122 | 1.01e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1416630 | AT4G19645.2 | 70.854 | 199 | 57 | 1 | 1 | 198 | 70 | 268 | 2.55e-101 | 293 |
| Msa1416630 | AT4G19645.1 | 70.854 | 199 | 57 | 1 | 1 | 198 | 70 | 268 | 2.55e-101 | 293 |
| Msa1416630 | AT4G19645.3 | 70.854 | 199 | 57 | 1 | 1 | 198 | 70 | 268 | 2.55e-101 | 293 |
| Msa1416630 | AT4G19645.5 | 70.854 | 199 | 57 | 1 | 1 | 198 | 70 | 268 | 2.55e-101 | 293 |
| Msa1416630 | AT4G19645.4 | 70.854 | 199 | 57 | 1 | 1 | 198 | 70 | 268 | 2.55e-101 | 293 |
| Msa1416630 | AT1G31300.3 | 68.020 | 197 | 63 | 0 | 1 | 197 | 79 | 275 | 1.28e-96 | 282 |
| Msa1416630 | AT1G31300.1 | 68.020 | 197 | 63 | 0 | 1 | 197 | 79 | 275 | 1.28e-96 | 282 |
| Msa1416630 | AT1G31300.2 | 68.020 | 197 | 63 | 0 | 1 | 197 | 79 | 275 | 1.28e-96 | 282 |
| Msa1416630 | AT4G10360.1 | 49.239 | 197 | 100 | 0 | 2 | 198 | 63 | 259 | 1.15e-70 | 216 |
| Msa1416630 | AT4G10360.3 | 49.239 | 197 | 100 | 0 | 2 | 198 | 63 | 259 | 1.15e-70 | 216 |
| Msa1416630 | AT4G10360.2 | 49.239 | 197 | 100 | 0 | 2 | 198 | 63 | 259 | 1.15e-70 | 216 |
Find 85 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCGATGGGATTGGGATTT+TGG | 0.066446 | tig0024373:+13127 | None:intergenic |
| TTATGTGACTTGACAAATTT+TGG | 0.096827 | tig0024373:+8133 | None:intergenic |
| AATCCCAATCCCATCGATTT+AGG | 0.119306 | tig0024373:-13123 | Msa1416630:five_prime_UTR |
| ATTCCATATACTTCCATTAT+TGG | 0.162120 | tig0024373:-11763 | Msa1416630:five_prime_UTR |
| CTGACCTGGGGATGATATTT+TGG | 0.191833 | tig0024373:-10031 | Msa1416630:CDS |
| TCACGATATTTCTCGTTAAA+AGG | 0.194085 | tig0024373:-11887 | Msa1416630:five_prime_UTR |
| ATCCCAATCCCATCGATTTA+GGG | 0.293521 | tig0024373:-13122 | Msa1416630:five_prime_UTR |
| TGCGTTGTCTACGTTTGCTC+TGG | 0.295133 | tig0024373:-11269 | Msa1416630:CDS |
| GGTTTCTGTTGGTTACTTCA+TGG | 0.300633 | tig0024373:-10054 | Msa1416630:CDS |
| GTCTCTGTGTCCTTTCCCTC+TGG | 0.301841 | tig0024373:-8335 | Msa1416630:three_prime_UTR |
| CCACCAATAATGGAAGTATA+TGG | 0.336930 | tig0024373:+11760 | None:intergenic |
| CAAACAAATTAGCCTGGTTC+TGG | 0.356158 | tig0024373:+11815 | None:intergenic |
| TTCAGCAGATGCACCCCTTT+GGG | 0.368570 | tig0024373:-8512 | Msa1416630:CDS |
| GTACACGAACAAAAGTATTC+TGG | 0.379427 | tig0024373:+9464 | None:intergenic |
| TATAGGTTATGCTGATGTTC+AGG | 0.389227 | tig0024373:-8365 | Msa1416630:three_prime_UTR |
| TTGCGAAACGTCATAGTTTG+TGG | 0.395364 | tig0024373:-13206 | Msa1416630:five_prime_UTR |
| GTTCAGCAGATGCACCCCTT+TGG | 0.395777 | tig0024373:-8513 | Msa1416630:CDS |
| CAAAAGCTTATCTCATCAAT+GGG | 0.403192 | tig0024373:-9615 | Msa1416630:CDS |
| AGAGCAGAAAAGAACATGTT+TGG | 0.404497 | tig0024373:-8277 | Msa1416630:three_prime_UTR |
| TCTCTGTGTCCTTTCCCTCT+GGG | 0.405055 | tig0024373:-8334 | Msa1416630:three_prime_UTR |
| TGTCAGTTATGAACTTGATT+TGG | 0.405632 | tig0024373:-8458 | Msa1416630:CDS |
| AACCCTAAATCGATGGGATT+GGG | 0.410667 | tig0024373:+13120 | None:intergenic |
| AATTAATGTACATAAAGAAT+AGG | 0.411025 | tig0024373:+8196 | None:intergenic |
| AACAACAATGTCTTTGTACT+TGG | 0.411039 | tig0024373:-11353 | Msa1416630:CDS |
| TCAAAAGCTTATCTCATCAA+TGG | 0.412137 | tig0024373:-9616 | Msa1416630:CDS |
| TGCTTACTTGCACTTTGATC+AGG | 0.414301 | tig0024373:-9430 | Msa1416630:intron |
| TGGTTACTTCATGGCTGACC+TGG | 0.414342 | tig0024373:-10045 | Msa1416630:CDS |
| GGCTGGAATAGCTCTTAAAA+TGG | 0.414912 | tig0024373:+11529 | None:intergenic |
| GCGTTGTCTACGTTTGCTCT+GGG | 0.417870 | tig0024373:-11268 | Msa1416630:CDS |
| TACCATCTCAAATTGATTCC+AGG | 0.421230 | tig0024373:+9753 | None:intergenic |
| CTCGCTATCAGAATATAGAT+TGG | 0.432922 | tig0024373:+11321 | None:intergenic |
| ATTAATGTACATAAAGAATA+GGG | 0.432994 | tig0024373:+8197 | None:intergenic |
| ATCTCTGAGACAACAACTCC+TGG | 0.443341 | tig0024373:-9771 | Msa1416630:CDS |
| GAAGTGAGGTATGGTGGAGG+AGG | 0.446744 | tig0024373:+13159 | None:intergenic |
| AAACCCTAAATCGATGGGAT+TGG | 0.478509 | tig0024373:+13119 | None:intergenic |
| TGGGAAGAAGTGAGGTATGG+TGG | 0.479726 | tig0024373:+13153 | None:intergenic |
| AACGTATTGAGTGGAATAAC+CGG | 0.480032 | tig0024373:-11494 | Msa1416630:intron |
| TGAAGGTATCTTGATGTAGC+TGG | 0.481580 | tig0024373:-9649 | Msa1416630:intron |
| TGCGAAACGTCATAGTTTGT+GGG | 0.482135 | tig0024373:-13205 | Msa1416630:five_prime_UTR |
| ACAACTAGTATTTGCCCAAA+GGG | 0.485721 | tig0024373:+8498 | None:intergenic |
| CCTTCACAAACAAATTAGCC+TGG | 0.487479 | tig0024373:+11809 | None:intergenic |
| TGTGATATTCATTGCTTGGC+TGG | 0.488189 | tig0024373:-9590 | Msa1416630:intron |
| TATTCAATGTTGAGTGGAGA+AGG | 0.490363 | tig0024373:-9819 | Msa1416630:CDS |
| CCAGGCTAATTTGTTTGTGA+AGG | 0.491470 | tig0024373:-11809 | Msa1416630:five_prime_UTR |
| GGTTACTTCATGGCTGACCT+GGG | 0.492658 | tig0024373:-10044 | Msa1416630:CDS |
| GAACATGTTTGGATCAATTG+TGG | 0.496224 | tig0024373:-8266 | Msa1416630:three_prime_UTR |
| TTCTCCACTCAACATTGAAT+AGG | 0.506976 | tig0024373:+9821 | None:intergenic |
| GGGTTGTGATATTCATTGCT+TGG | 0.509380 | tig0024373:-9594 | Msa1416630:CDS |
| ACGTTGGATTCTAGTGAGGC+TGG | 0.514845 | tig0024373:+11512 | None:intergenic |
| ATAACAGGTGAGTGGAGAAA+AGG | 0.517859 | tig0024373:-11929 | Msa1416630:intron |
| CCATATACTTCCATTATTGG+TGG | 0.519713 | tig0024373:-11760 | Msa1416630:five_prime_UTR |
| TTTGGGAATGGGAAGAAGTG+AGG | 0.522353 | tig0024373:+13145 | None:intergenic |
| AAAGGATAGTGTCGCAATGT+TGG | 0.527760 | tig0024373:-11869 | Msa1416630:five_prime_UTR |
| TTCATAACTGACAGCACCAC+TGG | 0.530852 | tig0024373:+8468 | None:intergenic |
| ATGTGAAAACCCTAAATCGA+TGG | 0.536366 | tig0024373:+13113 | None:intergenic |
| TTATTGCGACAGGTTTCTGT+TGG | 0.538429 | tig0024373:-10065 | Msa1416630:intron |
| GTTGTCTACGTTTGCTCTGG+GGG | 0.543652 | tig0024373:-11266 | Msa1416630:intron |
| TCACATATCCTCACTGCGAT+CGG | 0.551805 | tig0024373:-13096 | Msa1416630:intron |
| TGTGAAAACCCTAAATCGAT+GGG | 0.557758 | tig0024373:+13114 | None:intergenic |
| ATGGAAGTATATGGAATCAG+AGG | 0.569837 | tig0024373:+11769 | None:intergenic |
| GGTTATTCCACTCAATACGT+TGG | 0.581665 | tig0024373:+11496 | None:intergenic |
| TACTCATATCCACCAAGAGC+AGG | 0.583577 | tig0024373:+10002 | None:intergenic |
| CGTTGTCTACGTTTGCTCTG+GGG | 0.587028 | tig0024373:-11267 | Msa1416630:CDS |
| TTGATGTAGCTGGAATGAAA+AGG | 0.589122 | tig0024373:-9639 | Msa1416630:CDS |
| CTCCTGGAATCAATTTGAGA+TGG | 0.592012 | tig0024373:-9755 | Msa1416630:intron |
| GAAGAAGTGAGGTATGGTGG+AGG | 0.597624 | tig0024373:+13156 | None:intergenic |
| GTTACTTCATGGCTGACCTG+GGG | 0.598137 | tig0024373:-10043 | Msa1416630:CDS |
| CTAGAATCCAACGTATTGAG+TGG | 0.603281 | tig0024373:-11503 | Msa1416630:five_prime_UTR |
| AAAACCAAAATATCATCCCC+AGG | 0.607335 | tig0024373:+10027 | None:intergenic |
| ATTCAATGTTGAGTGGAGAA+GGG | 0.619830 | tig0024373:-9818 | Msa1416630:CDS |
| AGGGAAAGGACACAGAGACA+AGG | 0.620919 | tig0024373:+8339 | None:intergenic |
| AACAACTAGTATTTGCCCAA+AGG | 0.624762 | tig0024373:+8497 | None:intergenic |
| AGGGCAGCTGTACACATACA+TGG | 0.625873 | tig0024373:-9799 | Msa1416630:CDS |
| ATTCAAATCATACCAGAACC+AGG | 0.632366 | tig0024373:-11827 | Msa1416630:five_prime_UTR |
| CAGCTGAACTTCTTACAGAA+CGG | 0.632644 | tig0024373:-11297 | Msa1416630:CDS |
| TGGAAGTATATGGAATCAGA+GGG | 0.646274 | tig0024373:+11770 | None:intergenic |
| CAATACGTTGGATTCTAGTG+AGG | 0.649208 | tig0024373:+11508 | None:intergenic |
| GTAGCCTATTCAATGTTGAG+TGG | 0.649521 | tig0024373:-9825 | Msa1416630:CDS |
| GAATGGGAAGAAGTGAGGTA+TGG | 0.649630 | tig0024373:+13150 | None:intergenic |
| ATTCATATATAACAGGTGAG+TGG | 0.653816 | tig0024373:-11937 | Msa1416630:intron |
| TAATGAAGACATTAGCGAAG+AGG | 0.656512 | tig0024373:-8413 | Msa1416630:CDS |
| ACTAGTTGTTGTTGTACCAG+TGG | 0.666319 | tig0024373:-8484 | Msa1416630:CDS |
| CAACTAGTATTTGCCCAAAG+GGG | 0.709004 | tig0024373:+8499 | None:intergenic |
| AAAAGCTTATCTCATCAATG+GGG | 0.737817 | tig0024373:-9614 | Msa1416630:CDS |
| AGTGTAAAAGAAAGAAGACG+CGG | 0.767636 | tig0024373:-13229 | Msa1416630:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCTAAGATAATTTA+AGG | - | tig0024373:9707-9726 | Msa1416630:intron | 10.0% |
| !!! | TTTTTTTGTAAAGTAAATAT+AGG | - | tig0024373:13002-13021 | Msa1416630:intron | 10.0% |
| !! | TTAAAGTATGATTAGAAAAA+CGG | + | tig0024373:8365-8384 | None:intergenic | 15.0% |
| !!! | ATTGATAATTTTATTTCTGT+TGG | - | tig0024373:8615-8634 | Msa1416630:intron | 15.0% |
| !! | AATTATTAATGTAATCACAT+TGG | - | tig0024373:8878-8897 | Msa1416630:intron | 15.0% |
| !!! | CAATGTTTATTATTTAACTT+TGG | - | tig0024373:9117-9136 | Msa1416630:intron | 15.0% |
| !! | TGTAATTATTCATATATAAC+AGG | - | tig0024373:9440-9459 | Msa1416630:CDS | 15.0% |
| !! | TTATGAGTTTAGATAAATTA+GGG | - | tig0024373:10259-10278 | Msa1416630:intron | 15.0% |
| !! | TAGTAATTGTTAATATTACA+CGG | - | tig0024373:10375-10394 | Msa1416630:intron | 15.0% |
| !! | CTATACAAATATTTATCAAA+TGG | + | tig0024373:12658-12677 | None:intergenic | 15.0% |
| !! | ATTAATGTACATAAAGAATA+GGG | + | tig0024373:13190-13209 | None:intergenic | 15.0% |
| !! | AATTAATGTACATAAAGAAT+AGG | + | tig0024373:13191-13210 | None:intergenic | 15.0% |
| !! | ATATACCAATCAGTAATTAA+CGG | + | tig0024373:8546-8565 | None:intergenic | 20.0% |
| !!! | AACTTTTTAGTATCTTTGTT+TGG | - | tig0024373:9024-9043 | Msa1416630:intron | 20.0% |
| !!! | TCTAAATTTTCTATTTTTCC+AGG | - | tig0024373:9802-9821 | Msa1416630:CDS | 20.0% |
| !!! | TTGTTGTTATAAAAATGGAA+TGG | + | tig0024373:10019-10038 | None:intergenic | 20.0% |
| !!! | AGACATTGTTGTTATAAAAA+TGG | + | tig0024373:10024-10043 | None:intergenic | 20.0% |
| !! | GTTATGAGTTTAGATAAATT+AGG | - | tig0024373:10258-10277 | Msa1416630:intron | 20.0% |
| !! | TATGAGTTTAGATAAATTAG+GGG | - | tig0024373:10260-10279 | Msa1416630:intron | 20.0% |
| !! | TTATCAATGATATTTCATCA+TGG | + | tig0024373:10307-10326 | None:intergenic | 20.0% |
| !! | AGTAATTGTTAATATTACAC+GGG | - | tig0024373:10376-10395 | Msa1416630:intron | 20.0% |
| !!! | GAATTAGTTTTCATATTACT+TGG | + | tig0024373:10612-10631 | None:intergenic | 20.0% |
| !! | CTAATATAGAAACTAAACTT+AGG | - | tig0024373:10653-10672 | Msa1416630:intron | 20.0% |
| !!! | ATTAATCCAAGATATCTTTT+GGG | + | tig0024373:10825-10844 | None:intergenic | 20.0% |
| !!! | TTATCAGTTTTTCATTATAC+TGG | - | tig0024373:10982-11001 | Msa1416630:intron | 20.0% |
| !!! | TTAATTAAGTTTTTCTACAG+TGG | + | tig0024373:11212-11231 | None:intergenic | 20.0% |
| !!! | TTGTAGCTCATATTTTTTTT+TGG | - | tig0024373:11243-11262 | Msa1416630:intron | 20.0% |
| !!! | TTTATTTTATTTATTGCGAC+AGG | - | tig0024373:11309-11328 | Msa1416630:CDS | 20.0% |
| !! | GAACAATCTTAAATTCAAAT+AGG | + | tig0024373:11455-11474 | None:intergenic | 20.0% |
| !! | ATTTAATGTGACTTCATATT+TGG | - | tig0024373:11501-11520 | Msa1416630:five_prime_UTR | 20.0% |
| !! | GAAAAAAAATCACAACATAA+TGG | + | tig0024373:11679-11698 | None:intergenic | 20.0% |
| !!! | TATTTCTATGATGTACTATA+AGG | - | tig0024373:12151-12170 | Msa1416630:intron | 20.0% |
| !! | TACAAATATTTATCAAATGG+TGG | + | tig0024373:12655-12674 | None:intergenic | 20.0% |
| ! | GCAATAATAACAGAATAACA+AGG | + | tig0024373:8449-8468 | None:intergenic | 25.0% |
| !!! | TTTATTTCTGTTGGTTTAGT+TGG | - | tig0024373:8624-8643 | Msa1416630:intron | 25.0% |
| !!! | CTAATTTTGTTTACATTGCT+TGG | - | tig0024373:8678-8697 | Msa1416630:intron | 25.0% |
| !!! | TTAACCTTTTAGAGTTGATT+TGG | - | tig0024373:9079-9098 | Msa1416630:intron | 25.0% |
| !!! | TAACCTTTTAGAGTTGATTT+GGG | - | tig0024373:9080-9099 | Msa1416630:intron | 25.0% |
| ! | TACTACAGAAGTTAAATAAC+AGG | + | tig0024373:9343-9362 | None:intergenic | 25.0% |
| !!! | TACTTGAAAGTTGTTTTCAT+AGG | - | tig0024373:9373-9392 | Msa1416630:intron | 25.0% |
| ! | ATTCCATATACTTCCATTAT+TGG | - | tig0024373:9621-9640 | Msa1416630:CDS | 25.0% |
| ! | AGTAGTAATCACATATAATG+AGG | - | tig0024373:10215-10234 | Msa1416630:intron | 25.0% |
| ! | ATGAGTTTAGATAAATTAGG+GGG | - | tig0024373:10261-10280 | Msa1416630:intron | 25.0% |
| ! | ATTACTAATGATACTGACAT+TGG | + | tig0024373:10362-10381 | None:intergenic | 25.0% |
| ! | GTAATTGTTAATATTACACG+GGG | - | tig0024373:10377-10396 | Msa1416630:intron | 25.0% |
| ! | ACTGACAGTATCAAATATTA+GGG | + | tig0024373:10481-10500 | None:intergenic | 25.0% |
| ! | TTCATGTATTCCTAAAAGTA+GGG | + | tig0024373:10541-10560 | None:intergenic | 25.0% |
| ! | AACTCACAATCTAAACAAAT+AGG | - | tig0024373:10559-10578 | Msa1416630:intron | 25.0% |
| ! | ACTCACAATCTAAACAAATA+GGG | - | tig0024373:10560-10579 | Msa1416630:intron | 25.0% |
| ! | TCTAAACAAATAGGGAAATA+AGG | - | tig0024373:10568-10587 | Msa1416630:intron | 25.0% |
| !! | GATTAATCCAAGATATCTTT+TGG | + | tig0024373:10826-10845 | None:intergenic | 25.0% |
| !!! | ACTTGTTGTTTTAGAATGAA+AGG | - | tig0024373:10956-10975 | Msa1416630:intron | 25.0% |
| ! | TATATCGAAAGCTTAAATAG+TGG | - | tig0024373:11092-11111 | Msa1416630:intron | 25.0% |
| ! | TTACTAACAGATAGAAAGTA+TGG | + | tig0024373:11139-11158 | None:intergenic | 25.0% |
| !!! | AGCTCTTTATTCTGAAATTT+TGG | - | tig0024373:12040-12059 | Msa1416630:intron | 25.0% |
| !!! | AGTAATTTGTTGTTTTCATG+TGG | - | tig0024373:12174-12193 | Msa1416630:intron | 25.0% |
| !! | AGTAGTATATTTTCTCCATT+TGG | - | tig0024373:12276-12295 | Msa1416630:intron | 25.0% |
| ! | ACATCTCAAAAAAAACCAAA+TGG | + | tig0024373:12294-12313 | None:intergenic | 25.0% |
| ! | ACATCTCAAAAAAACCAAAA+GGG | + | tig0024373:12490-12509 | None:intergenic | 25.0% |
| ! | CCTGTTATATCATTGAATAT+TGG | + | tig0024373:12852-12871 | None:intergenic | 25.0% |
| ! | CCAATATTCAATGATATAAC+AGG | - | tig0024373:12849-12868 | Msa1416630:intron | 25.0% |
| !! | TGGTTTTCAAAGATTATCAA+AGG | - | tig0024373:12946-12965 | Msa1416630:intron | 25.0% |
| !! | GGTTTTCAAAGATTATCAAA+GGG | - | tig0024373:12947-12966 | Msa1416630:intron | 25.0% |
| TAGAAAAACGGAATCGTTTA+AGG | + | tig0024373:8353-8372 | None:intergenic | 30.0% | |
| ACAAACCGTTAATTACTGAT+TGG | - | tig0024373:8538-8557 | Msa1416630:intron | 30.0% | |
| CATTGCTTGGTATATACATT+TGG | - | tig0024373:8691-8710 | Msa1416630:intron | 30.0% | |
| ! | GGTATATACATTTGGAATCT+AGG | - | tig0024373:8699-8718 | Msa1416630:intron | 30.0% |
| ! | TATACATTTGGAATCTAGGA+TGG | - | tig0024373:8703-8722 | Msa1416630:intron | 30.0% |
| !! | GAATCTAGGATGGAATTTTA+GGG | - | tig0024373:8713-8732 | Msa1416630:intron | 30.0% |
| TGAAATTTCGGTATGTAGAA+AGG | - | tig0024373:8743-8762 | Msa1416630:intron | 30.0% | |
| GAAATTTCGGTATGTAGAAA+GGG | - | tig0024373:8744-8763 | Msa1416630:intron | 30.0% | |
| !! | ATCCTTTTGACTAATTTCAG+AGG | - | tig0024373:8782-8801 | Msa1416630:intron | 30.0% |
| !! | AACCTCTGAAATTAGTCAAA+AGG | + | tig0024373:8787-8806 | None:intergenic | 30.0% |
| !!! | TAGAAGGTTTGGATTTTTTC+TGG | - | tig0024373:9049-9068 | Msa1416630:intron | 30.0% |
| !!! | AGAAGGTTTGGATTTTTTCT+GGG | - | tig0024373:9050-9069 | Msa1416630:intron | 30.0% |
| AATCCCAAATCAACTCTAAA+AGG | + | tig0024373:9086-9105 | None:intergenic | 30.0% | |
| !! | TTTAGAGTTGATTTGGGATT+AGG | - | tig0024373:9086-9105 | Msa1416630:intron | 30.0% |
| TGAGATATTCCTTGCAAAAA+AGG | + | tig0024373:9178-9197 | None:intergenic | 30.0% | |
| GAAGAAAACAAAAGAAATGC+AGG | + | tig0024373:9212-9231 | None:intergenic | 30.0% | |
| ATGTCAATTGTGTGACAAAT+AGG | + | tig0024373:9292-9311 | None:intergenic | 30.0% | |
| ATTCATATATAACAGGTGAG+TGG | - | tig0024373:9447-9466 | Msa1416630:CDS | 30.0% | |
| TCACGATATTTCTCGTTAAA+AGG | - | tig0024373:9497-9516 | Msa1416630:intron | 30.0% | |
| AAATGAAAAAACTCACTCAC+CGG | + | tig0024373:9912-9931 | None:intergenic | 30.0% | |
| AACAACAATGTCTTTGTACT+TGG | - | tig0024373:10031-10050 | Msa1416630:CDS | 30.0% | |
| AGTAATCACATATAATGAGG+AGG | - | tig0024373:10218-10237 | Msa1416630:intron | 30.0% | |
| GTAATCACATATAATGAGGA+GGG | - | tig0024373:10219-10238 | Msa1416630:intron | 30.0% | |
| TAATCACATATAATGAGGAG+GGG | - | tig0024373:10220-10239 | Msa1416630:intron | 30.0% | |
| TGAGTTTAGATAAATTAGGG+GGG | - | tig0024373:10262-10281 | Msa1416630:intron | 30.0% | |
| CTGACAGTATCAAATATTAG+GGG | + | tig0024373:10480-10499 | None:intergenic | 30.0% | |
| GACTGACAGTATCAAATATT+AGG | + | tig0024373:10482-10501 | None:intergenic | 30.0% | |
| TCATGTATTCCTAAAAGTAG+GGG | + | tig0024373:10540-10559 | None:intergenic | 30.0% | |
| GTTCATGTATTCCTAAAAGT+AGG | + | tig0024373:10542-10561 | None:intergenic | 30.0% | |
| ATTAGACCCAAAAGATATCT+TGG | - | tig0024373:10816-10835 | Msa1416630:intron | 30.0% | |
| TGCAAAACAATCGACTAATA+AGG | - | tig0024373:10856-10875 | Msa1416630:intron | 30.0% | |
| TGGTTCACATTATATTAGTC+TGG | + | tig0024373:10900-10919 | None:intergenic | 30.0% | |
| ATTTCATTCATCACACATTC+TGG | + | tig0024373:10930-10949 | None:intergenic | 30.0% | |
| ! | TATTCCTATGCACGATTTTA+AGG | - | tig0024373:11066-11085 | Msa1416630:intron | 30.0% |
| !!! | TTGGAAACACTTTTTTCATC+TGG | - | tig0024373:11262-11281 | Msa1416630:intron | 30.0% |
| ACATTAAATCATCTCCAGAT+GGG | + | tig0024373:11490-11509 | None:intergenic | 30.0% | |
| TCAAAAGCTTATCTCATCAA+TGG | - | tig0024373:11768-11787 | Msa1416630:five_prime_UTR | 30.0% | |
| CAAAAGCTTATCTCATCAAT+GGG | - | tig0024373:11769-11788 | Msa1416630:five_prime_UTR | 30.0% | |
| AAAAGCTTATCTCATCAATG+GGG | - | tig0024373:11770-11789 | Msa1416630:five_prime_UTR | 30.0% | |
| AATTCTTAAACTCAGTGTGT+TGG | + | tig0024373:11989-12008 | None:intergenic | 30.0% | |
| ! | TTTTCATGTGGAAAGAAAGT+GGG | - | tig0024373:12186-12205 | Msa1416630:intron | 30.0% |
| !!! | TTGGTTTTTTTTGAGATGTG+AGG | - | tig0024373:12295-12314 | Msa1416630:intron | 30.0% |
| !!! | TGGTTTTTTTTGAGATGTGA+GGG | - | tig0024373:12296-12315 | Msa1416630:intron | 30.0% |
| CACATCTCAAAAAAACCAAA+AGG | + | tig0024373:12491-12510 | None:intergenic | 30.0% | |
| !!! | CTTTTGGTTTTTTTGAGATG+TGG | - | tig0024373:12489-12508 | Msa1416630:intron | 30.0% |
| TAGGAGTGAATCTTGAATAT+TGG | - | tig0024373:12512-12531 | Msa1416630:intron | 30.0% | |
| ! | AATATTGGATTTTACCTGCA+TGG | - | tig0024373:12527-12546 | Msa1416630:intron | 30.0% |
| GAACTATGTGTATGTATGTA+TGG | + | tig0024373:12616-12635 | None:intergenic | 30.0% | |
| GACTATACTTAAGTCAAATG+TGG | - | tig0024373:12684-12703 | Msa1416630:intron | 30.0% | |
| GTAATCTCTTCTGTAATTTC+TGG | - | tig0024373:12788-12807 | Msa1416630:intron | 30.0% | |
| TGTCAGTTATGAACTTGATT+TGG | - | tig0024373:12926-12945 | Msa1416630:intron | 30.0% | |
| AGTGTAAAAGAAAGAAGACG+CGG | - | tig0024373:8155-8174 | Msa1416630:three_prime_UTR | 35.0% | |
| TGTGAAAACCCTAAATCGAT+GGG | + | tig0024373:8273-8292 | None:intergenic | 35.0% | |
| ATGTGAAAACCCTAAATCGA+TGG | + | tig0024373:8274-8293 | None:intergenic | 35.0% | |
| AAAAATCACTCGTATCGAGA+CGG | + | tig0024373:8584-8603 | None:intergenic | 35.0% | |
| !! | ATTTCTGTTGGTTTAGTTGG+TGG | - | tig0024373:8627-8646 | Msa1416630:intron | 35.0% |
| !! | GGAATCTAGGATGGAATTTT+AGG | - | tig0024373:8712-8731 | Msa1416630:intron | 35.0% |
| ! | TAGGGTTGTTGGTGAAATTT+CGG | - | tig0024373:8731-8750 | Msa1416630:intron | 35.0% |
| !! | TTACAGAGGTTTAAGTTGAG+AGG | - | tig0024373:8953-8972 | Msa1416630:intron | 35.0% |
| !! | GTATCTTTGTTTGGTGTAGA+AGG | - | tig0024373:9033-9052 | Msa1416630:intron | 35.0% |
| !! | TTTGTTTGGTGTAGAAGGTT+TGG | - | tig0024373:9038-9057 | Msa1416630:intron | 35.0% |
| !!! | TCATGATGTCCTTTTTTGCA+AGG | - | tig0024373:9166-9185 | Msa1416630:intron | 35.0% |
| ! | AATCAAGTTGTGTTCATCTC+TGG | - | tig0024373:9397-9416 | Msa1416630:intron | 35.0% |
| ATTCAAATCATACCAGAACC+AGG | - | tig0024373:9557-9576 | Msa1416630:intron | 35.0% | |
| ! | TGGAAGTATATGGAATCAGA+GGG | + | tig0024373:9617-9636 | None:intergenic | 35.0% |
| ! | ATGGAAGTATATGGAATCAG+AGG | + | tig0024373:9618-9637 | None:intergenic | 35.0% |
| ! | CCACCAATAATGGAAGTATA+TGG | + | tig0024373:9627-9646 | None:intergenic | 35.0% |
| CCATATACTTCCATTATTGG+TGG | - | tig0024373:9624-9643 | Msa1416630:CDS | 35.0% | |
| AGCAAAAATGCCACCAATAA+TGG | + | tig0024373:9637-9656 | None:intergenic | 35.0% | |
| AACGTATTGAGTGGAATAAC+CGG | - | tig0024373:9890-9909 | Msa1416630:intron | 35.0% | |
| CTCGCTATCAGAATATAGAT+TGG | + | tig0024373:10066-10085 | None:intergenic | 35.0% | |
| TCTTGCAAGAGGTAAAGAAA+AGG | + | tig0024373:10177-10196 | None:intergenic | 35.0% | |
| TTAATATTACACGGGGAGTT+GGG | - | tig0024373:10384-10403 | Msa1416630:intron | 35.0% | |
| ! | AGCTTAGTAAGCTTTAGCTT+GGG | + | tig0024373:10743-10762 | None:intergenic | 35.0% |
| ! | AAGCTTAGTAAGCTTTAGCT+TGG | + | tig0024373:10744-10763 | None:intergenic | 35.0% |
| TCACACATTCTGGATTCATA+TGG | + | tig0024373:10920-10939 | None:intergenic | 35.0% | |
| ATGACCTTAAAATCGTGCAT+AGG | + | tig0024373:11073-11092 | None:intergenic | 35.0% | |
| ! | TGGCTCTATTAGCAAAATGA+AGG | + | tig0024373:11192-11211 | None:intergenic | 35.0% |
| AAAACCAAAATATCATCCCC+AGG | + | tig0024373:11360-11379 | None:intergenic | 35.0% | |
| !!! | TTTTGGTTTTTTCCTGCTCT+TGG | - | tig0024373:11370-11389 | Msa1416630:CDS | 35.0% |
| ! | TTGGTGGATATGAGTATGTA+AGG | - | tig0024373:11389-11408 | Msa1416630:intron | 35.0% |
| CACATTAAATCATCTCCAGA+TGG | + | tig0024373:11491-11510 | None:intergenic | 35.0% | |
| ! | TGTGACTTCATATTTGGTTC+AGG | - | tig0024373:11507-11526 | Msa1416630:five_prime_UTR | 35.0% |
| TTCTCCACTCAACATTGAAT+AGG | + | tig0024373:11566-11585 | None:intergenic | 35.0% | |
| TATTCAATGTTGAGTGGAGA+AGG | - | tig0024373:11565-11584 | Msa1416630:intron | 35.0% | |
| ATTCAATGTTGAGTGGAGAA+GGG | - | tig0024373:11566-11585 | Msa1416630:intron | 35.0% | |
| ! | TACCATCTCAAATTGATTCC+AGG | + | tig0024373:11634-11653 | None:intergenic | 35.0% |
| ! | TTTTCGTCTTTTGTTCGTGA+AGG | - | tig0024373:11718-11737 | Msa1416630:intron | 35.0% |
| TTGATGTAGCTGGAATGAAA+AGG | - | tig0024373:11745-11764 | Msa1416630:five_prime_UTR | 35.0% | |
| !! | GTACACGAACAAAAGTATTC+TGG | + | tig0024373:11923-11942 | None:intergenic | 35.0% |
| TAAGAATTGTCTTGTGTCTC+TGG | - | tig0024373:12001-12020 | Msa1416630:intron | 35.0% | |
| AGTGATCTTGCAGGAAAAAA+TGG | + | tig0024373:12120-12139 | None:intergenic | 35.0% | |
| ! | GTTTTCATGTGGAAAGAAAG+TGG | - | tig0024373:12185-12204 | Msa1416630:intron | 35.0% |
| CCAAGATCACCTAAATTTGT+AGG | + | tig0024373:12219-12238 | None:intergenic | 35.0% | |
| CCTACAAATTTAGGTGATCT+TGG | - | tig0024373:12216-12235 | Msa1416630:intron | 35.0% | |
| !!! | GGTTTTTTTTGAGATGTGAG+GGG | - | tig0024373:12297-12316 | Msa1416630:intron | 35.0% |
| ACAACCTCTTGTGTAAAAAC+AGG | - | tig0024373:12386-12405 | Msa1416630:intron | 35.0% | |
| CAACCTCTTGTGTAAAAACA+GGG | - | tig0024373:12387-12406 | Msa1416630:intron | 35.0% | |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | tig0024373:12393-12412 | None:intergenic | 35.0% |
| TCTTGTGTAAAAACAGGGTA+AGG | - | tig0024373:12392-12411 | Msa1416630:intron | 35.0% | |
| TGCGTACAATACACCAAAAT+TGG | - | tig0024373:12416-12435 | Msa1416630:intron | 35.0% | |
| !!! | TGGTTTTTTTGAGATGTGGT+AGG | - | tig0024373:12493-12512 | Msa1416630:intron | 35.0% |
| !! | CATGGATTAGTGATTTCACA+TGG | - | tig0024373:12545-12564 | Msa1416630:intron | 35.0% |
| !! | TCACATGGATTAGAGATTAG+TGG | - | tig0024373:12560-12579 | Msa1416630:intron | 35.0% |
| ATTTATCAAATGGTGGTCAG+AGG | + | tig0024373:12648-12667 | None:intergenic | 35.0% | |
| TGTAGACTTGTACTGTTGTT+TGG | - | tig0024373:12735-12754 | Msa1416630:intron | 35.0% | |
| ! | GTAGACTTGTACTGTTGTTT+GGG | - | tig0024373:12736-12755 | Msa1416630:intron | 35.0% |
| AAATCTGCATGGTAAATCTG+AGG | - | tig0024373:12818-12837 | Msa1416630:intron | 35.0% | |
| AATCTGCATGGTAAATCTGA+GGG | - | tig0024373:12819-12838 | Msa1416630:intron | 35.0% | |
| ACAACTAGTATTTGCCCAAA+GGG | + | tig0024373:12889-12908 | None:intergenic | 35.0% | |
| AACAACTAGTATTTGCCCAA+AGG | + | tig0024373:12890-12909 | None:intergenic | 35.0% | |
| TAATGAAGACATTAGCGAAG+AGG | - | tig0024373:12971-12990 | Msa1416630:intron | 35.0% | |
| TATAGGTTATGCTGATGTTC+AGG | - | tig0024373:13019-13038 | Msa1416630:intron | 35.0% | |
| !! | CATCTATGTTTTTACCCAGA+GGG | + | tig0024373:13067-13086 | None:intergenic | 35.0% |
| !! | TCATCTATGTTTTTACCCAG+AGG | + | tig0024373:13068-13087 | None:intergenic | 35.0% |
| AGAGCAGAAAAGAACATGTT+TGG | - | tig0024373:13107-13126 | Msa1416630:five_prime_UTR | 35.0% | |
| GAACATGTTTGGATCAATTG+TGG | - | tig0024373:13118-13137 | Msa1416630:five_prime_UTR | 35.0% | |
| TTGCGAAACGTCATAGTTTG+TGG | - | tig0024373:8178-8197 | Msa1416630:three_prime_UTR | 40.0% | |
| ! | TGCGAAACGTCATAGTTTGT+GGG | - | tig0024373:8179-8198 | Msa1416630:three_prime_UTR | 40.0% |
| ! | ATCGATGGGATTGGGATTTT+GGG | + | tig0024373:8259-8278 | None:intergenic | 40.0% |
| ! | AATCGATGGGATTGGGATTT+TGG | + | tig0024373:8260-8279 | None:intergenic | 40.0% |
| !! | AATCCCAATCCCATCGATTT+AGG | - | tig0024373:8261-8280 | Msa1416630:three_prime_UTR | 40.0% |
| !! | ATCCCAATCCCATCGATTTA+GGG | - | tig0024373:8262-8281 | Msa1416630:three_prime_UTR | 40.0% |
| AACCCTAAATCGATGGGATT+GGG | + | tig0024373:8267-8286 | None:intergenic | 40.0% | |
| AAACCCTAAATCGATGGGAT+TGG | + | tig0024373:8268-8287 | None:intergenic | 40.0% | |
| TGAGAGTAGTGAGAAGATGA+AGG | + | tig0024373:8328-8347 | None:intergenic | 40.0% | |
| !!! | GGATGGAATTTTAGGGTTGT+TGG | - | tig0024373:8720-8739 | Msa1416630:intron | 40.0% |
| !! | AGAGGTTTAAGTTGAGAGGA+AGG | - | tig0024373:8957-8976 | Msa1416630:intron | 40.0% |
| !! | GTTTAAGTTGAGAGGAAGGA+AGG | - | tig0024373:8961-8980 | Msa1416630:intron | 40.0% |
| !! | GAAGGAAGGAGTGTTGTAAT+GGG | - | tig0024373:8975-8994 | Msa1416630:intron | 40.0% |
| ATAACAGGTGAGTGGAGAAA+AGG | - | tig0024373:9455-9474 | Msa1416630:CDS | 40.0% | |
| AAAGGATAGTGTCGCAATGT+TGG | - | tig0024373:9515-9534 | Msa1416630:intron | 40.0% | |
| ! | CAAACAAATTAGCCTGGTTC+TGG | + | tig0024373:9572-9591 | None:intergenic | 40.0% |
| CCTTCACAAACAAATTAGCC+TGG | + | tig0024373:9578-9597 | None:intergenic | 40.0% | |
| !! | CCAGGCTAATTTGTTTGTGA+AGG | - | tig0024373:9575-9594 | Msa1416630:intron | 40.0% |
| ! | TGGCATTTTTGCTTGCAAGA+TGG | - | tig0024373:9644-9663 | Msa1416630:CDS | 40.0% |
| GGCTGGAATAGCTCTTAAAA+TGG | + | tig0024373:9858-9877 | None:intergenic | 40.0% | |
| CAATACGTTGGATTCTAGTG+AGG | + | tig0024373:9879-9898 | None:intergenic | 40.0% | |
| CTAGAATCCAACGTATTGAG+TGG | - | tig0024373:9881-9900 | Msa1416630:intron | 40.0% | |
| GGTTATTCCACTCAATACGT+TGG | + | tig0024373:9891-9910 | None:intergenic | 40.0% | |
| CAGCTGAACTTCTTACAGAA+CGG | - | tig0024373:10087-10106 | Msa1416630:intron | 40.0% | |
| ACAAAATCGAGTCTTGCAAG+AGG | + | tig0024373:10188-10207 | None:intergenic | 40.0% | |
| GTTAATATTACACGGGGAGT+TGG | - | tig0024373:10383-10402 | Msa1416630:intron | 40.0% | |
| AATATTAGGGGACGTAAACC+TGG | + | tig0024373:10468-10487 | None:intergenic | 40.0% | |
| !! | TTAGTAAGCTTTAGCTTGGG+GGG | + | tig0024373:10740-10759 | None:intergenic | 40.0% |
| !! | CTTAGTAAGCTTTAGCTTGG+GGG | + | tig0024373:10741-10760 | None:intergenic | 40.0% |
| !! | GCTTAGTAAGCTTTAGCTTG+GGG | + | tig0024373:10742-10761 | None:intergenic | 40.0% |
| TTATTGCGACAGGTTTCTGT+TGG | - | tig0024373:11319-11338 | Msa1416630:CDS | 40.0% | |
| ! | GGTTTCTGTTGGTTACTTCA+TGG | - | tig0024373:11330-11349 | Msa1416630:CDS | 40.0% |
| GTAGCCTATTCAATGTTGAG+TGG | - | tig0024373:11559-11578 | Msa1416630:five_prime_UTR | 40.0% | |
| CTCCTGGAATCAATTTGAGA+TGG | - | tig0024373:11629-11648 | Msa1416630:intron | 40.0% | |
| !! | TGAAGGTATCTTGATGTAGC+TGG | - | tig0024373:11735-11754 | Msa1416630:intron | 40.0% |
| GGGTTGTGATATTCATTGCT+TGG | - | tig0024373:11790-11809 | Msa1416630:five_prime_UTR | 40.0% | |
| TGTGATATTCATTGCTTGGC+TGG | - | tig0024373:11794-11813 | Msa1416630:five_prime_UTR | 40.0% | |
| ATATTCATTGCTTGGCTGGT+AGG | - | tig0024373:11798-11817 | Msa1416630:five_prime_UTR | 40.0% | |
| TGCTTACCGAAACTATTTGC+AGG | - | tig0024373:11894-11913 | Msa1416630:five_prime_UTR | 40.0% | |
| TGGCAACCTGCAAATAGTTT+CGG | + | tig0024373:11903-11922 | None:intergenic | 40.0% | |
| TGCTTACTTGCACTTTGATC+AGG | - | tig0024373:11954-11973 | Msa1416630:intron | 40.0% | |
| TGTTGAGAAAGTGATCTTGC+AGG | + | tig0024373:12129-12148 | None:intergenic | 40.0% | |
| GGATCTTGGCCTACAAATTT+AGG | - | tig0024373:12207-12226 | Msa1416630:intron | 40.0% | |
| ! | GATCTTGGCCTACAAGTTTT+AGG | - | tig0024373:12231-12250 | Msa1416630:intron | 40.0% |
| CCTTTGCACCTAAAACTTGT+AGG | + | tig0024373:12242-12261 | None:intergenic | 40.0% | |
| !!! | CCTACAAGTTTTAGGTGCAA+AGG | - | tig0024373:12239-12258 | Msa1416630:intron | 40.0% |
| GTTGTTGTCATGTGACTGTA+AGG | - | tig0024373:12342-12361 | Msa1416630:intron | 40.0% | |
| ! | TTACACAAGAGGTTGTTTCC+AGG | + | tig0024373:12382-12401 | None:intergenic | 40.0% |
| AAAAAACCAAAAGGGCAACC+CGG | + | tig0024373:12482-12501 | None:intergenic | 40.0% | |
| GTGAAATCACTAATCCATGC+AGG | + | tig0024373:12544-12563 | None:intergenic | 40.0% | |
| CAACTAGTATTTGCCCAAAG+GGG | + | tig0024373:12888-12907 | None:intergenic | 40.0% | |
| ! | ACTAGTTGTTGTTGTACCAG+TGG | - | tig0024373:12900-12919 | Msa1416630:intron | 40.0% |
| !! | ATGTTTTTACCCAGAGGGAA+AGG | + | tig0024373:13062-13081 | None:intergenic | 40.0% |
| GAATGGGAAGAAGTGAGGTA+TGG | + | tig0024373:8237-8256 | None:intergenic | 45.0% | |
| TTTGGGAATGGGAAGAAGTG+AGG | + | tig0024373:8242-8261 | None:intergenic | 45.0% | |
| !! | GGGATTGGGATTTTGGGAAT+GGG | + | tig0024373:8253-8272 | None:intergenic | 45.0% |
| !! | TGGGATTGGGATTTTGGGAA+TGG | + | tig0024373:8254-8273 | None:intergenic | 45.0% |
| TCACATATCCTCACTGCGAT+CGG | - | tig0024373:8288-8307 | Msa1416630:three_prime_UTR | 45.0% | |
| !! | TGGTTTAGTTGGTGGATCTG+TGG | - | tig0024373:8635-8654 | Msa1416630:intron | 45.0% |
| TGTCTGTGTCAATGCTGCAT+AGG | + | tig0024373:8814-8833 | None:intergenic | 45.0% | |
| GTAACACCAACACTTGCAAG+AGG | + | tig0024373:8937-8956 | None:intergenic | 45.0% | |
| !! | TGCAAGTGTTGGTGTTACAG+AGG | - | tig0024373:8939-8958 | Msa1416630:intron | 45.0% |
| !! | GGAAGGAAGGAGTGTTGTAA+TGG | - | tig0024373:8974-8993 | Msa1416630:intron | 45.0% |
| GCTGAGTAAGATCATAGACC+TGG | + | tig0024373:9823-9842 | None:intergenic | 45.0% | |
| TTAAGAGCAGCGTGATAAGG+AGG | + | tig0024373:10423-10442 | None:intergenic | 45.0% | |
| GAGTTAAGAGCAGCGTGATA+AGG | + | tig0024373:10426-10445 | None:intergenic | 45.0% | |
| ! | TAAACCTGGTTTGATGGCTG+GGG | + | tig0024373:10454-10473 | None:intergenic | 45.0% |
| ! | GTAAACCTGGTTTGATGGCT+GGG | + | tig0024373:10455-10474 | None:intergenic | 45.0% |
| ! | TGTCAGTCAAGTCACTGACT+TGG | - | tig0024373:10494-10513 | Msa1416630:intron | 45.0% |
| !! | ACACACTAGCCCCTACTTTT+AGG | - | tig0024373:10528-10547 | Msa1416630:intron | 45.0% |
| !! | TAGTAAGCTTTAGCTTGGGG+GGG | + | tig0024373:10739-10758 | None:intergenic | 45.0% |
| ! | CTGACCTGGGGATGATATTT+TGG | - | tig0024373:11353-11372 | Msa1416630:CDS | 45.0% |
| !!! | TGGTTTTTTCCTGCTCTTGG+TGG | - | tig0024373:11373-11392 | Msa1416630:CDS | 45.0% |
| TACTCATATCCACCAAGAGC+AGG | + | tig0024373:11385-11404 | None:intergenic | 45.0% | |
| ! | TCACTTGATAGCAACCCATC+TGG | - | tig0024373:11473-11492 | Msa1416630:intron | 45.0% |
| !! | ATCTCTGAGACAACAACTCC+TGG | - | tig0024373:11613-11632 | Msa1416630:intron | 45.0% |
| GTGGAAAGAAAGTGGGATCT+TGG | - | tig0024373:12193-12212 | Msa1416630:intron | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | tig0024373:12348-12367 | Msa1416630:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | tig0024373:12349-12368 | Msa1416630:intron | 45.0% | |
| ACCAAAATTGGTACCCTTCC+CGG | - | tig0024373:12428-12447 | Msa1416630:intron | 45.0% | |
| CTGGTCAAGCAAAATCTGCA+TGG | - | tig0024373:12807-12826 | Msa1416630:intron | 45.0% | |
| TTCATAACTGACAGCACCAC+TGG | + | tig0024373:12919-12938 | None:intergenic | 45.0% | |
| !!! | AATTTAGATTTTTTTTTTTT+TGG | + | tig0024373:9790-9809 | None:intergenic | 5.0% |
| GAAGAAGTGAGGTATGGTGG+AGG | + | tig0024373:8231-8250 | None:intergenic | 50.0% | |
| TGGGAAGAAGTGAGGTATGG+TGG | + | tig0024373:8234-8253 | None:intergenic | 50.0% | |
| !! | TGCAGCATTGACACAGACAC+CGG | - | tig0024373:8815-8834 | Msa1416630:intron | 50.0% |
| !! | AACGTGCCAGTGTCATTTCC+CGG | + | tig0024373:8837-8856 | None:intergenic | 50.0% |
| GGTGTGACTCTTACACGTGT+TGG | - | tig0024373:8899-8918 | Msa1416630:intron | 50.0% | |
| CTCTTACACGTGTTGGACAC+CGG | - | tig0024373:8906-8925 | Msa1416630:intron | 50.0% | |
| !! | ACACTTGCAAGAGGAGTGTC+CGG | + | tig0024373:8928-8947 | None:intergenic | 50.0% |
| GACACTCCTCTTGCAAGTGT+TGG | - | tig0024373:8928-8947 | Msa1416630:intron | 50.0% | |
| TTCATCTCTGGCTGACATCG+AGG | - | tig0024373:9409-9428 | Msa1416630:intron | 50.0% | |
| ACGTTGGATTCTAGTGAGGC+TGG | + | tig0024373:9875-9894 | None:intergenic | 50.0% | |
| TGCGTTGTCTACGTTTGCTC+TGG | - | tig0024373:10115-10134 | Msa1416630:intron | 50.0% | |
| GCGTTGTCTACGTTTGCTCT+GGG | - | tig0024373:10116-10135 | Msa1416630:intron | 50.0% | |
| CGTTGTCTACGTTTGCTCTG+GGG | - | tig0024373:10117-10136 | Msa1416630:intron | 50.0% | |
| GTTGTCTACGTTTGCTCTGG+GGG | - | tig0024373:10118-10137 | Msa1416630:intron | 50.0% | |
| !! | GTTTGCTCTGGGGGTAAGAA+TGG | - | tig0024373:10127-10146 | Msa1416630:intron | 50.0% |
| TCTGGGGGTAAGAATGGTCT+TGG | - | tig0024373:10133-10152 | Msa1416630:intron | 50.0% | |
| ! | CGTAAACCTGGTTTGATGGC+TGG | + | tig0024373:10456-10475 | None:intergenic | 50.0% |
| ! | GGGACGTAAACCTGGTTTGA+TGG | + | tig0024373:10460-10479 | None:intergenic | 50.0% |
| TGGTTACTTCATGGCTGACC+TGG | - | tig0024373:11339-11358 | Msa1416630:CDS | 50.0% | |
| GGTTACTTCATGGCTGACCT+GGG | - | tig0024373:11340-11359 | Msa1416630:CDS | 50.0% | |
| GTTACTTCATGGCTGACCTG+GGG | - | tig0024373:11341-11360 | Msa1416630:CDS | 50.0% | |
| AGGGCAGCTGTACACATACA+TGG | - | tig0024373:11585-11604 | Msa1416630:intron | 50.0% | |
| GAGTTCTCATTCTTCCCCTC+TGG | - | tig0024373:11867-11886 | Msa1416630:five_prime_UTR | 50.0% | |
| TTCGGTAAGCATGTGCCAGA+GGG | + | tig0024373:11885-11904 | None:intergenic | 50.0% | |
| TTTCGGTAAGCATGTGCCAG+AGG | + | tig0024373:11886-11905 | None:intergenic | 50.0% | |
| TGAGATGTGAGGGGTAACCT+TGG | - | tig0024373:12306-12325 | Msa1416630:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | tig0024373:12326-12345 | None:intergenic | 50.0% | |
| !!! | TCCGGGAAGGGTACCAATTT+TGG | + | tig0024373:12432-12451 | None:intergenic | 50.0% |
| TTCAGCAGATGCACCCCTTT+GGG | - | tig0024373:12872-12891 | Msa1416630:intron | 50.0% | |
| AGGGAAAGGACACAGAGACA+AGG | + | tig0024373:13048-13067 | None:intergenic | 50.0% | |
| TCTCTGTGTCCTTTCCCTCT+GGG | - | tig0024373:13050-13069 | Msa1416630:intron | 50.0% | |
| ! | GAAGTGAGGTATGGTGGAGG+AGG | + | tig0024373:8228-8247 | None:intergenic | 55.0% |
| ! | GAAACGTACCGATCGCAGTG+AGG | + | tig0024373:8299-8318 | None:intergenic | 55.0% |
| CACTCGTATCGAGACGGTAC+AGG | + | tig0024373:8578-8597 | None:intergenic | 55.0% | |
| !! | GCAGCATTGACACAGACACC+GGG | - | tig0024373:8816-8835 | Msa1416630:intron | 55.0% |
| CAGACACCGGGAAATGACAC+TGG | - | tig0024373:8828-8847 | Msa1416630:intron | 55.0% | |
| CAGCGTGATAAGGAGGTCGA+GGG | + | tig0024373:10416-10435 | None:intergenic | 55.0% | |
| TCGGTAAGCATGTGCCAGAG+GGG | + | tig0024373:11884-11903 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | tig0024373:12361-12380 | Msa1416630:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | tig0024373:12455-12474 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | tig0024373:12456-12475 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | tig0024373:12460-12479 | Msa1416630:intron | 55.0% |
| GTTCAGCAGATGCACCCCTT+TGG | - | tig0024373:12871-12890 | Msa1416630:intron | 55.0% | |
| GTCTCTGTGTCCTTTCCCTC+TGG | - | tig0024373:13049-13068 | Msa1416630:intron | 55.0% | |
| GCAGCGTGATAAGGAGGTCG+AGG | + | tig0024373:10417-10436 | None:intergenic | 60.0% | |
| ! | TGGTTTGATGGCTGGGGTGG+AGG | + | tig0024373:10448-10467 | None:intergenic | 60.0% |
| TCCACCCCAGCCATCAAACC+AGG | - | tig0024373:10447-10466 | Msa1416630:intron | 60.0% | |
| ! | ACCTGGTTTGATGGCTGGGG+TGG | + | tig0024373:10451-10470 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | tig0024373:12315-12334 | Msa1416630:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | tig0024373:12461-12480 | Msa1416630:intron | 60.0% |
| ! | AGTGCACCGGGTTGCCCTTT+TGG | - | tig0024373:12473-12492 | Msa1416630:intron | 60.0% |
| GCATACGCAGGGTCCGGGAA+GGG | + | tig0024373:12444-12463 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | tig0024373:12443-12462 | Msa1416630:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | tig0024373:12444-12463 | Msa1416630:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | tig0024373:12445-12464 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | tig0024373:12449-12468 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | tig0024373:12450-12469 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024373 | gene | 8144 | 13262 | 8144 | ID=Msa1416630;Name=Msa1416630 |
| tig0024373 | mRNA | 8144 | 13262 | 8144 | ID=Msa1416630-mRNA-1;Parent=Msa1416630;Name=Msa1416630-mRNA-1;_AED=0.09;_eAED=0.09;_QI=462|1|1|1|0.62|0.55|9|263|198 |
| tig0024373 | exon | 8144 | 8535 | 8144 | ID=Msa1416630-mRNA-1:exon:23032;Parent=Msa1416630-mRNA-1 |
| tig0024373 | exon | 9431 | 9490 | 9431 | ID=Msa1416630-mRNA-1:exon:23031;Parent=Msa1416630-mRNA-1 |
| tig0024373 | exon | 9591 | 9666 | 9591 | ID=Msa1416630-mRNA-1:exon:23030;Parent=Msa1416630-mRNA-1 |
| tig0024373 | exon | 9756 | 9877 | 9756 | ID=Msa1416630-mRNA-1:exon:23029;Parent=Msa1416630-mRNA-1 |
| tig0024373 | exon | 10001 | 10075 | 10001 | ID=Msa1416630-mRNA-1:exon:23028;Parent=Msa1416630-mRNA-1 |
| tig0024373 | exon | 11267 | 11405 | 11267 | ID=Msa1416630-mRNA-1:exon:23027;Parent=Msa1416630-mRNA-1 |
| tig0024373 | exon | 11495 | 11582 | 11495 | ID=Msa1416630-mRNA-1:exon:23026;Parent=Msa1416630-mRNA-1 |
| tig0024373 | exon | 11741 | 11944 | 11741 | ID=Msa1416630-mRNA-1:exon:23025;Parent=Msa1416630-mRNA-1 |
| tig0024373 | exon | 13097 | 13262 | 13097 | ID=Msa1416630-mRNA-1:exon:23024;Parent=Msa1416630-mRNA-1 |
| tig0024373 | five_prime_UTR | 13097 | 13262 | 13097 | ID=Msa1416630-mRNA-1:five_prime_utr;Parent=Msa1416630-mRNA-1 |
| tig0024373 | five_prime_UTR | 11741 | 11944 | 11741 | ID=Msa1416630-mRNA-1:five_prime_utr;Parent=Msa1416630-mRNA-1 |
| tig0024373 | five_prime_UTR | 11495 | 11582 | 11495 | ID=Msa1416630-mRNA-1:five_prime_utr;Parent=Msa1416630-mRNA-1 |
| tig0024373 | five_prime_UTR | 11402 | 11405 | 11402 | ID=Msa1416630-mRNA-1:five_prime_utr;Parent=Msa1416630-mRNA-1 |
| tig0024373 | CDS | 11267 | 11401 | 11267 | ID=Msa1416630-mRNA-1:cds;Parent=Msa1416630-mRNA-1 |
| tig0024373 | CDS | 10001 | 10075 | 10001 | ID=Msa1416630-mRNA-1:cds;Parent=Msa1416630-mRNA-1 |
| tig0024373 | CDS | 9756 | 9877 | 9756 | ID=Msa1416630-mRNA-1:cds;Parent=Msa1416630-mRNA-1 |
| tig0024373 | CDS | 9591 | 9666 | 9591 | ID=Msa1416630-mRNA-1:cds;Parent=Msa1416630-mRNA-1 |
| tig0024373 | CDS | 9431 | 9490 | 9431 | ID=Msa1416630-mRNA-1:cds;Parent=Msa1416630-mRNA-1 |
| tig0024373 | CDS | 8407 | 8535 | 8407 | ID=Msa1416630-mRNA-1:cds;Parent=Msa1416630-mRNA-1 |
| tig0024373 | three_prime_UTR | 8144 | 8406 | 8144 | ID=Msa1416630-mRNA-1:three_prime_utr;Parent=Msa1416630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
