AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006680.t1 MTR_4g079770 96.522 345 11 1 1 344 1 345 0.0 693
MS.gene006680.t1 MTR_4g079470 96.232 345 12 1 1 344 1 345 0.0 692
MS.gene006680.t1 MTR_5g022560 90.435 345 31 2 1 344 1 344 0.0 651
MS.gene006680.t1 MTR_4g107930 89.275 345 36 1 1 344 1 345 0.0 645
MS.gene006680.t1 MTR_4g079800 91.884 345 27 1 1 344 1 345 0.0 634
MS.gene006680.t1 MTR_4g047610 89.565 345 33 3 1 344 1 343 0.0 622
MS.gene006680.t1 MTR_2g075830 77.391 345 73 4 1 344 1 341 0.0 534
MS.gene006680.t1 MTR_4g080700 65.839 322 101 8 26 344 25 340 6.16e-151 428
MS.gene006680.t1 MTR_4g080730 65.217 322 103 7 26 344 25 340 3.87e-150 426
MS.gene006680.t1 MTR_4g080360 53.824 340 151 5 8 344 6 342 1.81e-131 379
MS.gene006680.t1 MTR_2g083930 52.722 349 151 5 1 342 1 342 4.39e-129 373
MS.gene006680.t1 MTR_4g104370 57.101 338 135 8 10 342 10 342 5.76e-129 373
MS.gene006680.t1 MTR_3g075390 53.666 341 143 8 13 342 7 343 1.85e-125 364
MS.gene006680.t1 MTR_4g079440 55.484 310 131 4 34 342 40 343 5.46e-123 357
MS.gene006680.t1 MTR_3g116080 52.035 344 151 7 7 343 11 347 5.59e-121 352
MS.gene006680.t1 MTR_7g078600 58.065 310 118 7 35 342 37 336 1.16e-120 351
MS.gene006680.t1 MTR_7g079230 52.770 343 152 7 1 342 1 334 4.74e-119 347
MS.gene006680.t1 MTR_1g107550 56.013 316 129 7 33 342 43 354 5.08e-119 352
MS.gene006680.t1 MTR_2g090890 50.146 343 158 5 7 343 1 336 2.08e-118 345
MS.gene006680.t1 MTR_4g094918 48.680 341 164 7 10 343 5 341 5.00e-115 338
MS.gene006680.t1 MTR_1g018840 48.098 368 152 9 4 342 3 360 8.29e-113 335
MS.gene006680.t1 MTR_1g018840 48.098 368 152 9 4 342 3 360 1.27e-112 335
MS.gene006680.t1 MTR_3g102220 51.682 327 139 8 28 342 41 360 6.73e-112 334
MS.gene006680.t1 MTR_3g112430 50.482 311 140 5 41 343 37 341 3.70e-103 310
MS.gene006680.t1 MTR_2g015850 55.172 290 122 6 56 342 78 362 7.64e-101 301
MS.gene006680.t1 MTR_2g016180 44.669 347 168 11 12 343 18 355 3.68e-89 276
MS.gene006680.t1 MTR_2g016270 44.606 343 159 11 12 343 18 340 1.20e-87 271
MS.gene006680.t1 MTR_2g067900 45.625 320 151 13 39 343 15 326 1.36e-77 241
MS.gene006680.t1 MTR_2g067560 45.171 321 144 13 39 338 15 324 3.85e-74 246
MS.gene006680.t1 MTR_4g125300 41.042 307 165 9 42 343 53 348 1.34e-70 224
MS.gene006680.t1 MTR_2g064475 38.710 372 162 17 17 343 1 351 2.23e-70 223
MS.gene006680.t1 MTR_2g015920 39.308 318 179 10 34 343 47 358 1.20e-68 219
MS.gene006680.t1 MTR_4g065077 38.438 320 181 8 33 343 44 356 2.06e-68 219
MS.gene006680.t1 MTR_7g078630 45.455 286 115 5 29 303 695 950 6.09e-67 227
MS.gene006680.t1 MTR_2g066980 35.775 355 166 13 11 343 4 318 8.31e-67 213
MS.gene006680.t1 MTR_4g071060 40.317 315 160 11 38 335 45 348 8.52e-66 212
MS.gene006680.t1 MTR_1g023210 38.348 339 167 12 22 335 31 352 6.63e-65 209
MS.gene006680.t1 MTR_8g086470 37.421 318 171 8 33 343 60 356 4.34e-63 205
MS.gene006680.t1 MTR_2g015930 39.623 318 171 12 38 343 50 358 3.16e-62 202
MS.gene006680.t1 MTR_1g023810 45.022 231 118 6 114 341 37 261 8.95e-62 198
MS.gene006680.t1 MTR_1g094135 36.202 337 177 12 24 335 35 358 7.58e-58 192
MS.gene006680.t1 MTR_4g072790 34.680 297 157 8 42 335 50 312 1.56e-45 158
MS.gene006680.t1 MTR_2g015840 50.633 158 73 4 7 161 1 156 1.43e-44 154
MS.gene006680.t1 MTR_2g015840 55.357 112 49 1 232 343 161 271 5.31e-36 132
MS.gene006680.t1 MTR_4g073660 34.219 301 157 10 42 335 49 315 1.15e-42 150
MS.gene006680.t1 MTR_4g072340 34.551 301 156 10 42 335 50 316 1.47e-42 150
MS.gene006680.t1 MTR_7g078580 64.286 98 34 1 245 342 4 100 1.46e-41 141
MS.gene006680.t1 MTR_7g079130 70.000 90 27 0 253 342 7 96 9.03e-41 138
MS.gene006680.t1 MTR_1g025450 38.503 187 90 7 114 296 43 208 1.25e-32 127
MS.gene006680.t1 MTR_2g016380 47.107 121 57 4 227 343 18 135 5.16e-27 107
MS.gene006680.t1 MTR_7g078310 42.958 142 71 3 81 219 113 247 6.41e-27 107
MS.gene006680.t1 MTR_7g111060 25.879 313 189 12 56 335 28 330 9.93e-23 97.8
MS.gene006680.t1 MTR_7g079260 61.111 72 12 1 269 340 7 62 1.02e-22 91.7
MS.gene006680.t1 MTR_7g111050 29.787 235 135 8 132 343 110 337 5.97e-22 95.5
MS.gene006680.t1 MTR_8g087510 41.985 131 69 5 167 295 23 148 7.31e-21 88.6
MS.gene006680.t1 MTR_3g029560 27.888 251 146 9 99 343 16 237 2.21e-20 89.0
MS.gene006680.t1 MTR_2g047960 48.235 85 43 1 135 219 7 90 8.51e-18 78.2
MS.gene006680.t1 MTR_3g082370 26.087 207 133 5 131 322 5 206 2.74e-17 80.1
MS.gene006680.t1 MTR_7g111050 27.692 195 117 6 132 305 105 296 1.27e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006680.t1 AT5G45890 55.652 345 143 5 7 343 3 345 1.79e-136 392
MS.gene006680.t1 AT5G50260 55.072 345 130 7 15 342 5 341 1.98e-130 377
MS.gene006680.t1 AT3G48340 54.624 346 134 8 13 342 4 342 8.70e-124 360
MS.gene006680.t1 AT2G34080 50.877 342 156 6 11 344 8 345 6.10e-122 355
MS.gene006680.t1 AT4G35350 53.968 315 133 6 34 343 45 352 7.60e-119 347
MS.gene006680.t1 AT5G43060 53.681 326 136 7 25 342 34 352 9.50e-117 346
MS.gene006680.t1 AT3G49340 50.146 343 151 7 17 344 4 341 7.71e-116 339
MS.gene006680.t1 AT3G19390 49.854 343 161 6 9 343 6 345 1.05e-115 343
MS.gene006680.t1 AT2G27420 48.424 349 162 6 10 344 4 348 1.44e-115 338
MS.gene006680.t1 AT3G48350 50.720 347 153 8 11 343 1 343 3.78e-115 338
MS.gene006680.t1 AT1G06260 51.594 345 147 7 8 342 7 341 1.59e-112 331
MS.gene006680.t1 AT1G20850 52.716 313 141 5 34 343 45 353 1.76e-112 331
MS.gene006680.t1 AT4G36880 51.863 322 142 6 33 343 42 361 5.45e-112 330
MS.gene006680.t1 AT1G29090 46.459 353 173 7 4 344 7 355 6.35e-112 330
MS.gene006680.t1 AT1G47128 51.780 309 136 7 40 342 50 351 9.55e-111 330
MS.gene006680.t1 AT3G19400 50.814 307 146 5 40 343 44 348 3.93e-110 325
MS.gene006680.t1 AT1G29080 46.132 349 162 9 13 344 7 346 1.31e-108 321
MS.gene006680.t1 AT1G09850 50.323 310 150 4 34 342 26 332 1.01e-103 311
MS.gene006680.t1 AT4G23520 49.359 312 137 9 41 342 48 348 9.36e-102 304
MS.gene006680.t1 AT4G11310 48.553 311 142 7 41 342 50 351 8.28e-100 299
MS.gene006680.t1 AT4G11320 46.984 315 141 7 41 342 57 358 1.26e-98 296
MS.gene006680.t1 AT4G11320 46.984 315 141 7 41 342 57 358 1.26e-98 296
MS.gene006680.t1 AT1G29110 41.880 351 166 9 9 343 5 333 1.53e-89 272
MS.gene006680.t1 AT3G43960 43.675 332 177 8 17 342 18 345 1.44e-86 266
MS.gene006680.t1 AT4G35350 51.406 249 109 6 34 277 45 286 1.61e-84 257
MS.gene006680.t1 AT5G60360 44.625 307 154 9 42 343 61 356 1.30e-78 244
MS.gene006680.t1 AT3G19400 48.963 241 119 4 40 277 44 283 1.94e-76 237
MS.gene006680.t1 AT5G60360 44.300 307 154 10 42 343 61 355 5.74e-76 238
MS.gene006680.t1 AT3G45310 43.182 308 159 9 42 344 61 357 2.56e-75 236
MS.gene006680.t1 AT3G48350 46.619 281 132 8 11 277 1 277 2.73e-75 234
MS.gene006680.t1 AT5G60360 43.960 298 151 9 42 334 61 347 3.60e-74 233
MS.gene006680.t1 AT3G45310 42.857 308 159 10 42 344 61 356 9.99e-73 229
MS.gene006680.t1 AT4G39090 40.260 308 152 11 47 335 58 352 6.00e-64 207
MS.gene006680.t1 AT2G21430 38.816 304 162 8 47 335 55 349 8.21e-64 207
MS.gene006680.t1 AT3G54940 38.750 320 158 10 39 335 50 354 3.88e-61 200
MS.gene006680.t1 AT4G16190 39.228 311 157 11 45 335 60 358 1.05e-60 199
MS.gene006680.t1 AT3G54940 39.738 229 120 5 43 259 54 276 9.33e-46 157
MS.gene006680.t1 AT1G02305 29.778 225 130 7 132 335 116 333 6.46e-24 101
MS.gene006680.t1 AT4G01610 27.148 291 177 11 76 339 52 334 1.66e-21 94.4
MS.gene006680.t1 AT4G01610 26.804 291 178 11 76 339 52 334 2.97e-20 90.9
MS.gene006680.t1 AT1G02300 29.384 211 123 6 145 335 146 350 7.19e-20 90.1
MS.gene006680.t1 AT2G22160 40.217 92 52 2 55 145 9 98 1.14e-14 69.7

Find 94 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATGATTTAATTGATTAT+TGG 0.217020 4.1:+26463504 None:intergenic
TACAAAAGTGGTGTCTTTAC+TGG 0.247785 4.1:-26462598 MS.gene006680:CDS
ACTTCCCAGTACTCAACTTA+TGG 0.259340 4.1:+26462926 None:intergenic
TTTCTCCAATCCACTGTTGA+TGG 0.267040 4.1:+26463133 None:intergenic
GCATCAATAGCTACGGAAAT+TGG 0.285597 4.1:+26462643 None:intergenic
CTTATTATTGCCAGCATTGT+TGG 0.324490 4.1:+26463291 None:intergenic
CTGCAGTGCCTGCTCATTGT+TGG 0.329361 4.1:+26462684 None:intergenic
AGTTCCGTCAACACCTTGAT+AGG 0.330791 4.1:+26462768 None:intergenic
TGGGAAGTTGGTCTCTTTAT+CGG 0.332823 4.1:-26462911 MS.gene006680:CDS
GGGGAGAAGAAGGATATATT+AGG 0.344233 4.1:-26462471 MS.gene006680:CDS
AGGTTGTGAGGGTGGTCTTA+TGG 0.351711 4.1:-26462848 MS.gene006680:CDS
TCACTATGGCAAAGTCTATA+AGG 0.352872 4.1:-26463377 MS.gene006680:CDS
GAATTCATGGGGAACTGATT+GGG 0.355868 4.1:-26462491 MS.gene006680:CDS
ATCCATGCAGTTACCATTAC+CGG 0.356686 4.1:-26462724 MS.gene006680:CDS
AAATTCATCATTCAAAATCA+TGG 0.364764 4.1:-26462814 MS.gene006680:CDS
ATTGGTTGGTTAAGAATTCA+TGG 0.370703 4.1:-26462504 MS.gene006680:CDS
ATTAAATCATAGCATTTCAT+TGG 0.375929 4.1:-26463494 MS.gene006680:CDS
ACCTATTGTAGGATGTTGTT+GGG 0.383083 4.1:-26462980 MS.gene006680:intron
CATTGACCTTGGTTCTTCAC+TGG 0.396716 4.1:+26463094 None:intergenic
AGAATTCATGGGGAACTGAT+TGG 0.403396 4.1:-26462492 MS.gene006680:CDS
TACCTATTGTAGGATGTTGT+TGG 0.413643 4.1:-26462981 MS.gene006680:intron
GGAATCCATAAGTTGAGTAC+TGG 0.422547 4.1:-26462931 MS.gene006680:CDS
AGTACTTGTCTTTGTGATTG+AGG 0.434941 4.1:+26463180 None:intergenic
AGTGCCTGCTCATTGTTGGC+AGG 0.443934 4.1:+26462688 None:intergenic
ACTCAACTTATGGATTCCTT+CGG 0.446108 4.1:+26462936 None:intergenic
ATTCTTAACCAACCAATACT+TGG 0.453395 4.1:+26462510 None:intergenic
TCATAGCATTTCATTGGCAT+TGG 0.455936 4.1:-26463488 MS.gene006680:CDS
AGGATATATTAGGATGCAAA+GGG 0.460167 4.1:-26462461 MS.gene006680:CDS
GGAACTGATTGGGGAGAAGA+AGG 0.464169 4.1:-26462481 MS.gene006680:CDS
AAGTTTGGAACTTAAGCAGT+AGG 0.478514 4.1:+26462388 None:intergenic
TGCATCTAGAAACAAATTCA+AGG 0.484430 4.1:-26463215 MS.gene006680:CDS
AGATGCAATGAACTCCTCAT+TGG 0.488280 4.1:+26463231 None:intergenic
TTGCTCGTGTCTCTCGTACA+TGG 0.488893 4.1:+26463408 None:intergenic
TCTATAAGGATTCTCAAGAA+AGG 0.490614 4.1:-26463363 MS.gene006680:CDS
AAGAAAGGGAGAACCGTCTC+AGG 0.495449 4.1:-26463348 MS.gene006680:CDS
TACCCCTATCAAGGTGTTGA+CGG 0.498791 4.1:-26462772 MS.gene006680:CDS
GACATCTTCATACCCGGTAA+TGG 0.502057 4.1:+26462711 None:intergenic
GGTTACGGTGTCGGTAATGA+TGG 0.503999 4.1:-26462535 MS.gene006680:CDS
CTATAAGGATTCTCAAGAAA+GGG 0.505602 4.1:-26463362 MS.gene006680:CDS
AAGGATATATTAGGATGCAA+AGG 0.511028 4.1:-26462462 MS.gene006680:CDS
GATGCTGCTGAAGGACTTTG+TGG 0.515605 4.1:-26462433 MS.gene006680:CDS
TCTCGTACATGGAGTCATCT+TGG 0.518580 4.1:+26463419 None:intergenic
TAAGTTGAGTACTGGGAAGT+TGG 0.520530 4.1:-26462923 MS.gene006680:CDS
AATAATAAGTCATACAAACT+TGG 0.521678 4.1:-26463277 MS.gene006680:CDS
GAGCAATGGATGAGTCACTA+TGG 0.524213 4.1:-26463391 MS.gene006680:CDS
TTGGTTGGTTAAGAATTCAT+GGG 0.526242 4.1:-26462503 MS.gene006680:CDS
GACACTTACCACATTGACCT+TGG 0.526963 4.1:+26463083 None:intergenic
ATTGAAGCTTCCAACAATGC+TGG 0.532605 4.1:-26463301 MS.gene006680:CDS
ACAGTGGATTGGAGAAAGAA+AGG 0.533216 4.1:-26463127 MS.gene006680:CDS
CTTGTTGATTGTGACACAAA+AGG 0.533495 4.1:-26462880 MS.gene006680:CDS
TCTGCTGTTGCGGCAACCGA+AGG 0.538022 4.1:-26462952 MS.gene006680:CDS
GTTCCGTCAACACCTTGATA+GGG 0.541629 4.1:+26462769 None:intergenic
TAATTGATTATTGGCAGCCA+TGG 0.542700 4.1:+26463513 None:intergenic
GAATCCATAAGTTGAGTACT+GGG 0.546014 4.1:-26462930 MS.gene006680:CDS
GTGCCTGCTCATTGTTGGCA+GGG 0.546537 4.1:+26462689 None:intergenic
TCCGTAGCTATTGATGCTAG+TGG 0.550787 4.1:-26462637 MS.gene006680:CDS
GTGTTCCATCAACAGTGGAT+TGG 0.552593 4.1:-26463138 MS.gene006680:CDS
GGTGTCACTGCTGTAGGTTA+CGG 0.557743 4.1:-26462550 MS.gene006680:CDS
GAAGCTCAATACCCCTATCA+AGG 0.559311 4.1:-26462781 MS.gene006680:CDS
TGTCCCTGCCAACAATGAGC+AGG 0.564412 4.1:-26462692 MS.gene006680:CDS
GACACAAAAGGTGTAGATCA+AGG 0.565684 4.1:-26462868 MS.gene006680:CDS
CCGTAGCTATTGATGCTAGT+GGG 0.567886 4.1:-26462636 MS.gene006680:CDS
GTAATGATGGAACCAAGTAT+TGG 0.568388 4.1:-26462522 MS.gene006680:CDS
TGATGGAACCAAGTATTGGT+TGG 0.568906 4.1:-26462518 MS.gene006680:CDS
AATTCATGGGGAACTGATTG+GGG 0.571940 4.1:-26462490 MS.gene006680:CDS
AGTTTGGAACTTAAGCAGTA+GGG 0.572870 4.1:+26462389 None:intergenic
AGGGGAGTCGATGCTGCTGA+AGG 0.575211 4.1:-26462442 MS.gene006680:CDS
GGTGTAGATCAAGGTTGTGA+GGG 0.575537 4.1:-26462859 MS.gene006680:CDS
TTTCTTTGAATATCCTGAGA+CGG 0.585323 4.1:+26463335 None:intergenic
AGGACTTTGTGGCATTGCAA+TGG 0.587668 4.1:-26462422 MS.gene006680:CDS
GTAGATCAAGGTTGTGAGGG+TGG 0.595756 4.1:-26462856 MS.gene006680:CDS
CCCACTAGCATCAATAGCTA+CGG 0.596676 4.1:+26462636 None:intergenic
GGTAATGGTAACTGCATGGA+TGG 0.597553 4.1:+26462726 None:intergenic
ACCCGGTAATGGTAACTGCA+TGG 0.598149 4.1:+26462722 None:intergenic
TTCCGTCAACACCTTGATAG+GGG 0.605371 4.1:+26462770 None:intergenic
GGCAGGGACATCTTCATACC+CGG 0.606676 4.1:+26462705 None:intergenic
GCATCTAGAAACAAATTCAA+GGG 0.607899 4.1:-26463214 MS.gene006680:CDS
TGTACGAGAGACACGAGCAA+TGG 0.611237 4.1:-26463405 MS.gene006680:CDS
TGGTTCATGTGGAACTGAGT+TGG 0.612813 4.1:-26462578 MS.gene006680:CDS
GACCATGGTGTCACTGCTGT+AGG 0.612821 4.1:-26462556 MS.gene006680:CDS
TCCATGCAGTTACCATTACC+GGG 0.614442 4.1:-26462723 MS.gene006680:CDS
AGGTGTAGATCAAGGTTGTG+AGG 0.615496 4.1:-26462860 MS.gene006680:CDS
ACTGCTGTAGGTTACGGTGT+CGG 0.617674 4.1:-26462544 MS.gene006680:CDS
TGGTTGGTTAAGAATTCATG+GGG 0.622660 4.1:-26462502 MS.gene006680:CDS
TGCAAGTGTTCCATCAACAG+TGG 0.628871 4.1:-26463143 MS.gene006680:CDS
CAATGAACTCCTCATTGGTG+AGG 0.636198 4.1:+26463236 None:intergenic
GGTGTCTTTACTGGTTCATG+TGG 0.637602 4.1:-26462589 MS.gene006680:CDS
AACCTACAGCAGTGACACCA+TGG 0.663029 4.1:+26462554 None:intergenic
ATTTGCAGACCTCACCAATG+AGG 0.664553 4.1:-26463245 MS.gene006680:CDS
GGATATATTAGGATGCAAAG+GGG 0.671421 4.1:-26462460 MS.gene006680:CDS
GTGAAGAACCAAGGTCAATG+TGG 0.671761 4.1:-26463091 MS.gene006680:intron
GCAGGCACTGCAGAAAGCTG+TGG 0.675386 4.1:-26462674 MS.gene006680:CDS
TGTGGAACTGAGTTGGACCA+TGG 0.679648 4.1:-26462571 MS.gene006680:CDS
GTAACACCAGTGAAGAACCA+AGG 0.718576 4.1:-26463100 MS.gene006680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAATTTACCTATTGT+AGG - chr4.1:26462919-26462938 MS.gene006680:CDS 15.0%
!! AAATTCATCATTCAAAATCA+TGG - chr4.1:26463096-26463115 MS.gene006680:CDS 20.0%
!! AATAATAAGTCATACAAACT+TGG - chr4.1:26462633-26462652 MS.gene006680:CDS 20.0%
!! ATTAAATCATAGCATTTCAT+TGG - chr4.1:26462416-26462435 MS.gene006680:CDS 20.0%
!! GCTATGATTTAATTGATTAT+TGG + chr4.1:26462409-26462428 None:intergenic 20.0%
!!! TTTTATCACATAGTATGTAA+TGG + chr4.1:26462873-26462892 None:intergenic 20.0%
AAGGATATATTAGGATGCAA+AGG - chr4.1:26463448-26463467 MS.gene006680:CDS 30.0%
AGGATATATTAGGATGCAAA+GGG - chr4.1:26463449-26463468 MS.gene006680:CDS 30.0%
ATTCTTAACCAACCAATACT+TGG + chr4.1:26463403-26463422 None:intergenic 30.0%
CTATAAGGATTCTCAAGAAA+GGG - chr4.1:26462548-26462567 MS.gene006680:CDS 30.0%
GCATCTAGAAACAAATTCAA+GGG - chr4.1:26462696-26462715 MS.gene006680:CDS 30.0%
TCTATAAGGATTCTCAAGAA+AGG - chr4.1:26462547-26462566 MS.gene006680:CDS 30.0%
TGCATCTAGAAACAAATTCA+AGG - chr4.1:26462695-26462714 MS.gene006680:CDS 30.0%
TTTCTTTGAATATCCTGAGA+CGG + chr4.1:26462578-26462597 None:intergenic 30.0%
! ATTGGTTGGTTAAGAATTCA+TGG - chr4.1:26463406-26463425 MS.gene006680:CDS 30.0%
! GACTTTCAGTTTTACAAAAG+TGG - chr4.1:26463300-26463319 MS.gene006680:CDS 30.0%
! TTGGTTGGTTAAGAATTCAT+GGG - chr4.1:26463407-26463426 MS.gene006680:CDS 30.0%
ACCTATTGTAGGATGTTGTT+GGG - chr4.1:26462930-26462949 MS.gene006680:CDS 35.0%
ACTCAACTTATGGATTCCTT+CGG + chr4.1:26462977-26462996 None:intergenic 35.0%
AGTACTTGTCTTTGTGATTG+AGG + chr4.1:26462733-26462752 None:intergenic 35.0%
CTTATTATTGCCAGCATTGT+TGG + chr4.1:26462622-26462641 None:intergenic 35.0%
GGATATATTAGGATGCAAAG+GGG - chr4.1:26463450-26463469 MS.gene006680:CDS 35.0%
TACAAAAGTGGTGTCTTTAC+TGG - chr4.1:26463312-26463331 MS.gene006680:CDS 35.0%
TACCTATTGTAGGATGTTGT+TGG - chr4.1:26462929-26462948 MS.gene006680:CDS 35.0%
TCACTATGGCAAAGTCTATA+AGG - chr4.1:26462533-26462552 MS.gene006680:CDS 35.0%
TCATAGCATTTCATTGGCAT+TGG - chr4.1:26462422-26462441 MS.gene006680:CDS 35.0%
! CTTGTTGATTGTGACACAAA+AGG - chr4.1:26463030-26463049 MS.gene006680:intron 35.0%
! GAATCCATAAGTTGAGTACT+GGG - chr4.1:26462980-26462999 MS.gene006680:intron 35.0%
! GTAATGATGGAACCAAGTAT+TGG - chr4.1:26463388-26463407 MS.gene006680:CDS 35.0%
! TGGTTGGTTAAGAATTCATG+GGG - chr4.1:26463408-26463427 MS.gene006680:CDS 35.0%
!!! ATTGGCATTGGTTTTATGCT+TGG - chr4.1:26462434-26462453 MS.gene006680:CDS 35.0%
!!! TTGGCATTGGTTTTATGCTT+GGG - chr4.1:26462435-26462454 MS.gene006680:CDS 35.0%
AATTCATGGGGAACTGATTG+GGG - chr4.1:26463420-26463439 MS.gene006680:CDS 40.0%
ACTTCCCAGTACTCAACTTA+TGG + chr4.1:26462987-26463006 None:intergenic 40.0%
AGAATTCATGGGGAACTGAT+TGG - chr4.1:26463418-26463437 MS.gene006680:CDS 40.0%
AGATGCAATGAACTCCTCAT+TGG + chr4.1:26462682-26462701 None:intergenic 40.0%
ATCCATGCAGTTACCATTAC+CGG - chr4.1:26463186-26463205 MS.gene006680:CDS 40.0%
ATTGAAGCTTCCAACAATGC+TGG - chr4.1:26462609-26462628 MS.gene006680:CDS 40.0%
GAATTCATGGGGAACTGATT+GGG - chr4.1:26463419-26463438 MS.gene006680:CDS 40.0%
GCATCAATAGCTACGGAAAT+TGG + chr4.1:26463270-26463289 None:intergenic 40.0%
GGGGAGAAGAAGGATATATT+AGG - chr4.1:26463439-26463458 MS.gene006680:CDS 40.0%
TTTCTCCAATCCACTGTTGA+TGG + chr4.1:26462780-26462799 None:intergenic 40.0%
! GACACAAAAGGTGTAGATCA+AGG - chr4.1:26463042-26463061 MS.gene006680:intron 40.0%
! GGAATCCATAAGTTGAGTAC+TGG - chr4.1:26462979-26462998 MS.gene006680:intron 40.0%
! TGGGAAGTTGGTCTCTTTAT+CGG - chr4.1:26462999-26463018 MS.gene006680:intron 40.0%
!! ACAGTGGATTGGAGAAAGAA+AGG - chr4.1:26462783-26462802 MS.gene006680:CDS 40.0%
!! GGTTTTATGCTTGGGATTGT+TGG - chr4.1:26462443-26462462 MS.gene006680:CDS 40.0%
!! TAAGTTGAGTACTGGGAAGT+TGG - chr4.1:26462987-26463006 MS.gene006680:intron 40.0%
!! TGATGGAACCAAGTATTGGT+TGG - chr4.1:26463392-26463411 MS.gene006680:CDS 40.0%
AGGACTTTGTGGCATTGCAA+TGG - chr4.1:26463488-26463507 MS.gene006680:CDS 45.0%
AGGTGTAGATCAAGGTTGTG+AGG - chr4.1:26463050-26463069 MS.gene006680:intron 45.0%
AGTTCCGTCAACACCTTGAT+AGG + chr4.1:26463145-26463164 None:intergenic 45.0%
ATTTGCAGACCTCACCAATG+AGG - chr4.1:26462665-26462684 MS.gene006680:CDS 45.0%
CAATGAACTCCTCATTGGTG+AGG + chr4.1:26462677-26462696 None:intergenic 45.0%
CCCACTAGCATCAATAGCTA+CGG + chr4.1:26463277-26463296 None:intergenic 45.0%
CCGTAGCTATTGATGCTAGT+GGG - chr4.1:26463274-26463293 MS.gene006680:CDS 45.0%
GAAGCTCAATACCCCTATCA+AGG - chr4.1:26463129-26463148 MS.gene006680:CDS 45.0%
GACACTTACCACATTGACCT+TGG + chr4.1:26462830-26462849 None:intergenic 45.0%
GACATCTTCATACCCGGTAA+TGG + chr4.1:26463202-26463221 None:intergenic 45.0%
GAGCAATGGATGAGTCACTA+TGG - chr4.1:26462519-26462538 MS.gene006680:CDS 45.0%
GCCCAACAACATCCTACAAT+AGG + chr4.1:26462934-26462953 None:intergenic 45.0%
GGTGTAGATCAAGGTTGTGA+GGG - chr4.1:26463051-26463070 MS.gene006680:intron 45.0%
GTAACACCAGTGAAGAACCA+AGG - chr4.1:26462810-26462829 MS.gene006680:CDS 45.0%
GTGAAGAACCAAGGTCAATG+TGG - chr4.1:26462819-26462838 MS.gene006680:CDS 45.0%
GTGTTCCATCAACAGTGGAT+TGG - chr4.1:26462772-26462791 MS.gene006680:CDS 45.0%
GTTCCGTCAACACCTTGATA+GGG + chr4.1:26463144-26463163 None:intergenic 45.0%
TCCATGCAGTTACCATTACC+GGG - chr4.1:26463187-26463206 MS.gene006680:CDS 45.0%
TCCGTAGCTATTGATGCTAG+TGG - chr4.1:26463273-26463292 MS.gene006680:CDS 45.0%
TCTCGTACATGGAGTCATCT+TGG + chr4.1:26462494-26462513 None:intergenic 45.0%
TGCAAGTGTTCCATCAACAG+TGG - chr4.1:26462767-26462786 MS.gene006680:CDS 45.0%
TGGTTCATGTGGAACTGAGT+TGG - chr4.1:26463332-26463351 MS.gene006680:CDS 45.0%
TTCCGTCAACACCTTGATAG+GGG + chr4.1:26463143-26463162 None:intergenic 45.0%
! CATTGACCTTGGTTCTTCAC+TGG + chr4.1:26462819-26462838 None:intergenic 45.0%
! GGTAATGGTAACTGCATGGA+TGG + chr4.1:26463187-26463206 None:intergenic 45.0%
! TTGGGCATTTTCTGCTGTTG+CGG - chr4.1:26462948-26462967 MS.gene006680:CDS 45.0%
!! GGTGTCTTTACTGGTTCATG+TGG - chr4.1:26463321-26463340 MS.gene006680:CDS 45.0%
!! TACCCCTATCAAGGTGTTGA+CGG - chr4.1:26463138-26463157 MS.gene006680:CDS 45.0%
AACCTACAGCAGTGACACCA+TGG + chr4.1:26463359-26463378 None:intergenic 50.0%
AAGAAAGGGAGAACCGTCTC+AGG - chr4.1:26462562-26462581 MS.gene006680:CDS 50.0%
ACTGCTGTAGGTTACGGTGT+CGG - chr4.1:26463366-26463385 MS.gene006680:CDS 50.0%
GATGCTGCTGAAGGACTTTG+TGG - chr4.1:26463477-26463496 MS.gene006680:CDS 50.0%
GGAACTGATTGGGGAGAAGA+AGG - chr4.1:26463429-26463448 MS.gene006680:CDS 50.0%
GTAGATCAAGGTTGTGAGGG+TGG - chr4.1:26463054-26463073 MS.gene006680:intron 50.0%
TGTACGAGAGACACGAGCAA+TGG - chr4.1:26462505-26462524 MS.gene006680:CDS 50.0%
TTGCTCGTGTCTCTCGTACA+TGG + chr4.1:26462505-26462524 None:intergenic 50.0%
! ACCCGGTAATGGTAACTGCA+TGG + chr4.1:26463191-26463210 None:intergenic 50.0%
! AGGTTGTGAGGGTGGTCTTA+TGG - chr4.1:26463062-26463081 MS.gene006680:intron 50.0%
! TGTGGAACTGAGTTGGACCA+TGG - chr4.1:26463339-26463358 MS.gene006680:CDS 50.0%
!! GGTGTCACTGCTGTAGGTTA+CGG - chr4.1:26463360-26463379 MS.gene006680:CDS 50.0%
!! GGTTACGGTGTCGGTAATGA+TGG - chr4.1:26463375-26463394 MS.gene006680:CDS 50.0%
AGTGCCTGCTCATTGTTGGC+AGG + chr4.1:26463225-26463244 None:intergenic 55.0%
CTGCAGTGCCTGCTCATTGT+TGG + chr4.1:26463229-26463248 None:intergenic 55.0%
GGCAGGGACATCTTCATACC+CGG + chr4.1:26463208-26463227 None:intergenic 55.0%
GTGCCTGCTCATTGTTGGCA+GGG + chr4.1:26463224-26463243 None:intergenic 55.0%
TGTCCCTGCCAACAATGAGC+AGG - chr4.1:26463218-26463237 MS.gene006680:CDS 55.0%
!! GACCATGGTGTCACTGCTGT+AGG - chr4.1:26463354-26463373 MS.gene006680:CDS 55.0%
AGGGGAGTCGATGCTGCTGA+AGG - chr4.1:26463468-26463487 MS.gene006680:CDS 60.0%
TCTGCTGTTGCGGCAACCGA+AGG - chr4.1:26462958-26462977 MS.gene006680:CDS 60.0%
! GCAGGCACTGCAGAAAGCTG+TGG - chr4.1:26463236-26463255 MS.gene006680:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 26462399 26463533 26462399 ID=MS.gene006680
chr4.1 mRNA 26462399 26463533 26462399 ID=MS.gene006680.t1;Parent=MS.gene006680
chr4.1 exon 26463092 26463533 26463092 ID=MS.gene006680.t1.exon1;Parent=MS.gene006680.t1
chr4.1 CDS 26463092 26463533 26463092 ID=cds.MS.gene006680.t1;Parent=MS.gene006680.t1
chr4.1 exon 26462399 26462991 26462399 ID=MS.gene006680.t1.exon2;Parent=MS.gene006680.t1
chr4.1 CDS 26462399 26462991 26462399 ID=cds.MS.gene006680.t1;Parent=MS.gene006680.t1
Gene Sequence

>MS.gene006680

ATGGCTGCCAATAATCAATTAAATCATAGCATTTCATTGGCATTGGTTTTATGCTTGGGATTGTTGGCTATTCAAGTCACTTCTCGTACTCTCCAAGATGACTCCATGTACGAGAGACACGAGCAATGGATGAGTCACTATGGCAAAGTCTATAAGGATTCTCAAGAAAGGGAGAACCGTCTCAGGATATTCAAAGAAAATGTGAATTACATTGAAGCTTCCAACAATGCTGGCAATAATAAGTCATACAAACTTGGCATTAATCAATTTGCAGACCTCACCAATGAGGAGTTCATTGCATCTAGAAACAAATTCAAGGGTCATATGTGCTCCTCAATCACAAAGACAAGTACTTTTAAGTATGAAAATGCAAGTGTTCCATCAACAGTGGATTGGAGAAAGAAAGGAGCAGTAACACCAGTGAAGAACCAAGGTCAATGTGGTAAGTGTCTATCTAATATGTAATGCATTCCATTACATACTATGTGATAAAAATTTGAAGTGTCATTAAACTCTAGTTAATTTTAATTTACCTATTGTAGGATGTTGTTGGGCATTTTCTGCTGTTGCGGCAACCGAAGGAATCCATAAGTTGAGTACTGGGAAGTTGGTCTCTTTATCGGAACAAGAACTTGTTGATTGTGACACAAAAGGTGTAGATCAAGGTTGTGAGGGTGGTCTTATGGACGATGCTTTCAAATTCATCATTCAAAATCATGGACTCAACACTGAAGCTCAATACCCCTATCAAGGTGTTGACGGAACTTGCAGTGCAAACAAAGCATCCATCCATGCAGTTACCATTACCGGGTATGAAGATGTCCCTGCCAACAATGAGCAGGCACTGCAGAAAGCTGTGGCAAATCAACCAATTTCCGTAGCTATTGATGCTAGTGGGTCTGACTTTCAGTTTTACAAAAGTGGTGTCTTTACTGGTTCATGTGGAACTGAGTTGGACCATGGTGTCACTGCTGTAGGTTACGGTGTCGGTAATGATGGAACCAAGTATTGGTTGGTTAAGAATTCATGGGGAACTGATTGGGGAGAAGAAGGATATATTAGGATGCAAAGGGGAGTCGATGCTGCTGAAGGACTTTGTGGCATTGCAATGGAAGCATCTTACCCTACTGCTTAA
Protein sequence

>MS.gene006680.t1

MAANNQLNHSISLALVLCLGLLAIQVTSRTLQDDSMYERHEQWMSHYGKVYKDSQERENRLRIFKENVNYIEASNNAGNNKSYKLGINQFADLTNEEFIASRNKFKGHMCSSITKTSTFKYENASVPSTVDWRKKGAVTPVKNQGQCGCCWAFSAVAATEGIHKLSTGKLVSLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLNTEAQYPYQGVDGTCSANKASIHAVTITGYEDVPANNEQALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVGNDGTKYWLVKNSWGTDWGEEGYIRMQRGVDAAEGLCGIAMEASYPTA