Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09529.t1 | XP_013469438.1 | 96.6 | 381 | 13 | 0 | 55 | 435 | 1 | 381 | 2.10E-216 | 761.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09529.t1 | Q8VYS0 | 69.8 | 338 | 94 | 2 | 89 | 418 | 23 | 360 | 1.9e-141 | 503.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09529.t1 | A0A072VPA6 | 96.6 | 381 | 13 | 0 | 55 | 435 | 1 | 381 | 1.5e-216 | 761.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058156 | MS.gene09529 | 0.81934 | 1.22E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09529.t1 | MTR_1g094135 | 96.588 | 381 | 13 | 0 | 55 | 435 | 1 | 381 | 0.0 | 778 |
| MS.gene09529.t1 | MTR_1g023210 | 51.882 | 372 | 169 | 4 | 55 | 424 | 1 | 364 | 1.89e-138 | 401 |
| MS.gene09529.t1 | MTR_4g071060 | 53.203 | 359 | 157 | 6 | 69 | 424 | 10 | 360 | 4.82e-138 | 400 |
| MS.gene09529.t1 | MTR_4g073660 | 43.014 | 365 | 163 | 7 | 62 | 424 | 6 | 327 | 6.51e-98 | 296 |
| MS.gene09529.t1 | MTR_4g072790 | 43.169 | 366 | 157 | 9 | 62 | 424 | 7 | 324 | 3.45e-97 | 295 |
| MS.gene09529.t1 | MTR_4g072340 | 43.099 | 355 | 158 | 6 | 71 | 424 | 17 | 328 | 3.46e-96 | 292 |
| MS.gene09529.t1 | MTR_3g116080 | 36.857 | 350 | 191 | 8 | 76 | 417 | 17 | 344 | 1.21e-61 | 204 |
| MS.gene09529.t1 | MTR_4g079440 | 34.722 | 360 | 204 | 10 | 70 | 421 | 9 | 345 | 2.32e-60 | 200 |
| MS.gene09529.t1 | MTR_4g047610 | 36.957 | 322 | 173 | 9 | 108 | 417 | 36 | 339 | 1.92e-59 | 197 |
| MS.gene09529.t1 | MTR_5g022560 | 35.574 | 357 | 195 | 11 | 73 | 417 | 7 | 340 | 2.34e-59 | 197 |
| MS.gene09529.t1 | MTR_4g107930 | 35.674 | 356 | 194 | 11 | 74 | 417 | 9 | 341 | 3.67e-58 | 194 |
| MS.gene09529.t1 | MTR_4g080730 | 35.207 | 338 | 176 | 9 | 91 | 412 | 21 | 331 | 2.14e-56 | 189 |
| MS.gene09529.t1 | MTR_4g079470 | 36.795 | 337 | 176 | 12 | 89 | 412 | 24 | 336 | 2.15e-56 | 190 |
| MS.gene09529.t1 | MTR_4g065077 | 33.422 | 374 | 209 | 11 | 56 | 416 | 6 | 352 | 2.86e-56 | 190 |
| MS.gene09529.t1 | MTR_4g079770 | 36.890 | 328 | 172 | 12 | 98 | 412 | 31 | 336 | 3.25e-56 | 189 |
| MS.gene09529.t1 | MTR_2g016180 | 36.449 | 321 | 172 | 12 | 110 | 417 | 51 | 352 | 1.10e-55 | 192 |
| MS.gene09529.t1 | MTR_4g094918 | 32.454 | 379 | 199 | 11 | 55 | 417 | 1 | 338 | 2.26e-55 | 187 |
| MS.gene09529.t1 | MTR_4g080700 | 35.168 | 327 | 169 | 9 | 102 | 412 | 32 | 331 | 4.85e-55 | 186 |
| MS.gene09529.t1 | MTR_1g107550 | 35.693 | 339 | 182 | 12 | 89 | 412 | 30 | 347 | 9.94e-55 | 189 |
| MS.gene09529.t1 | MTR_4g125300 | 37.500 | 320 | 173 | 9 | 110 | 422 | 51 | 350 | 1.05e-54 | 186 |
| MS.gene09529.t1 | MTR_4g079800 | 35.435 | 333 | 180 | 12 | 98 | 417 | 31 | 341 | 1.11e-54 | 185 |
| MS.gene09529.t1 | MTR_2g016270 | 35.312 | 320 | 162 | 11 | 110 | 417 | 51 | 337 | 2.06e-54 | 188 |
| MS.gene09529.t1 | MTR_2g090890 | 35.443 | 316 | 171 | 9 | 107 | 412 | 36 | 328 | 2.42e-54 | 184 |
| MS.gene09529.t1 | MTR_4g104370 | 34.911 | 338 | 190 | 11 | 88 | 412 | 15 | 335 | 2.52e-54 | 185 |
| MS.gene09529.t1 | MTR_8g086470 | 32.546 | 381 | 206 | 12 | 48 | 416 | 11 | 352 | 4.58e-54 | 184 |
| MS.gene09529.t1 | MTR_1g018840 | 33.871 | 372 | 202 | 11 | 59 | 412 | 8 | 353 | 2.13e-53 | 185 |
| MS.gene09529.t1 | MTR_1g018840 | 33.602 | 372 | 203 | 10 | 59 | 412 | 8 | 353 | 3.57e-53 | 184 |
| MS.gene09529.t1 | MTR_2g015850 | 39.130 | 276 | 142 | 11 | 154 | 421 | 107 | 364 | 1.91e-51 | 177 |
| MS.gene09529.t1 | MTR_3g075390 | 32.544 | 338 | 199 | 10 | 88 | 412 | 15 | 336 | 1.91e-51 | 177 |
| MS.gene09529.t1 | MTR_3g112430 | 34.769 | 325 | 181 | 11 | 106 | 417 | 32 | 338 | 1.36e-50 | 177 |
| MS.gene09529.t1 | MTR_3g102220 | 35.667 | 300 | 155 | 10 | 130 | 412 | 75 | 353 | 2.00e-50 | 177 |
| MS.gene09529.t1 | MTR_2g083930 | 34.365 | 323 | 174 | 10 | 108 | 412 | 33 | 335 | 3.92e-48 | 168 |
| MS.gene09529.t1 | MTR_4g080360 | 34.579 | 321 | 174 | 12 | 109 | 414 | 36 | 335 | 1.04e-47 | 167 |
| MS.gene09529.t1 | MTR_2g075830 | 35.016 | 317 | 163 | 12 | 113 | 412 | 42 | 332 | 1.09e-47 | 167 |
| MS.gene09529.t1 | MTR_2g015920 | 29.211 | 380 | 202 | 13 | 66 | 414 | 9 | 352 | 4.83e-46 | 163 |
| MS.gene09529.t1 | MTR_2g067900 | 33.735 | 332 | 183 | 12 | 104 | 417 | 10 | 322 | 7.97e-45 | 159 |
| MS.gene09529.t1 | MTR_7g078600 | 38.158 | 228 | 118 | 7 | 191 | 412 | 119 | 329 | 3.32e-43 | 155 |
| MS.gene09529.t1 | MTR_2g015930 | 30.163 | 368 | 213 | 12 | 66 | 413 | 8 | 351 | 4.03e-43 | 155 |
| MS.gene09529.t1 | MTR_7g079230 | 31.288 | 326 | 186 | 11 | 99 | 412 | 28 | 327 | 9.92e-43 | 154 |
| MS.gene09529.t1 | MTR_8g087510 | 47.015 | 134 | 62 | 1 | 236 | 369 | 23 | 147 | 6.88e-40 | 141 |
| MS.gene09529.t1 | MTR_2g067560 | 33.429 | 350 | 185 | 16 | 104 | 427 | 10 | 337 | 2.15e-39 | 151 |
| MS.gene09529.t1 | MTR_1g023810 | 38.839 | 224 | 115 | 8 | 192 | 411 | 46 | 251 | 1.65e-37 | 137 |
| MS.gene09529.t1 | MTR_2g066980 | 31.307 | 329 | 151 | 13 | 113 | 417 | 37 | 314 | 8.45e-33 | 126 |
| MS.gene09529.t1 | MTR_2g064475 | 28.689 | 366 | 193 | 13 | 104 | 426 | 10 | 350 | 4.73e-32 | 125 |
| MS.gene09529.t1 | MTR_7g078630 | 34.715 | 193 | 99 | 6 | 191 | 369 | 762 | 941 | 3.31e-24 | 106 |
| MS.gene09529.t1 | MTR_1g025450 | 39.655 | 116 | 58 | 3 | 190 | 302 | 50 | 156 | 5.09e-19 | 89.7 |
| MS.gene09529.t1 | MTR_2g015840 | 35.862 | 145 | 83 | 5 | 113 | 248 | 36 | 179 | 1.07e-16 | 80.1 |
| MS.gene09529.t1 | MTR_7g078310 | 40.741 | 108 | 55 | 2 | 191 | 296 | 148 | 248 | 2.28e-16 | 79.3 |
| MS.gene09529.t1 | MTR_2g047960 | 43.478 | 92 | 44 | 1 | 199 | 290 | 2 | 85 | 5.52e-15 | 70.9 |
| MS.gene09529.t1 | MTR_7g111050 | 26.136 | 352 | 205 | 15 | 103 | 420 | 5 | 335 | 9.11e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09529.t1 | AT3G54940 | 69.822 | 338 | 94 | 2 | 89 | 418 | 23 | 360 | 0.0 | 509 |
| MS.gene09529.t1 | AT2G21430 | 56.193 | 331 | 139 | 4 | 88 | 417 | 29 | 354 | 5.73e-137 | 397 |
| MS.gene09529.t1 | AT4G39090 | 57.055 | 326 | 135 | 4 | 102 | 424 | 43 | 366 | 7.57e-136 | 395 |
| MS.gene09529.t1 | AT4G16190 | 56.119 | 335 | 138 | 6 | 97 | 426 | 42 | 372 | 7.85e-129 | 377 |
| MS.gene09529.t1 | AT3G54940 | 66.142 | 254 | 78 | 2 | 89 | 334 | 23 | 276 | 2.19e-122 | 357 |
| MS.gene09529.t1 | AT1G20850 | 38.750 | 320 | 164 | 8 | 110 | 417 | 51 | 350 | 7.85e-66 | 215 |
| MS.gene09529.t1 | AT4G35350 | 34.341 | 364 | 210 | 8 | 62 | 417 | 7 | 349 | 1.30e-61 | 204 |
| MS.gene09529.t1 | AT5G60360 | 37.822 | 349 | 179 | 10 | 88 | 422 | 34 | 358 | 9.67e-61 | 201 |
| MS.gene09529.t1 | AT1G29090 | 38.924 | 316 | 158 | 12 | 113 | 412 | 50 | 346 | 1.14e-58 | 196 |
| MS.gene09529.t1 | AT5G60360 | 37.870 | 338 | 172 | 10 | 88 | 411 | 34 | 347 | 2.15e-58 | 196 |
| MS.gene09529.t1 | AT5G45890 | 37.576 | 330 | 168 | 11 | 100 | 412 | 29 | 337 | 2.85e-58 | 195 |
| MS.gene09529.t1 | AT5G60360 | 37.536 | 349 | 179 | 11 | 88 | 422 | 34 | 357 | 3.29e-58 | 195 |
| MS.gene09529.t1 | AT3G45310 | 35.714 | 378 | 205 | 14 | 61 | 422 | 3 | 358 | 3.64e-58 | 195 |
| MS.gene09529.t1 | AT1G06260 | 37.072 | 321 | 171 | 10 | 107 | 417 | 40 | 339 | 9.44e-57 | 191 |
| MS.gene09529.t1 | AT5G43060 | 33.152 | 368 | 202 | 13 | 59 | 412 | 8 | 345 | 8.52e-56 | 191 |
| MS.gene09529.t1 | AT3G45310 | 35.519 | 366 | 198 | 14 | 61 | 410 | 3 | 346 | 9.37e-56 | 188 |
| MS.gene09529.t1 | AT1G47128 | 37.584 | 298 | 146 | 9 | 130 | 412 | 72 | 344 | 1.48e-54 | 188 |
| MS.gene09529.t1 | AT3G19400 | 35.484 | 341 | 183 | 12 | 92 | 417 | 27 | 345 | 1.51e-54 | 186 |
| MS.gene09529.t1 | AT4G36880 | 34.568 | 324 | 172 | 10 | 130 | 434 | 73 | 375 | 1.87e-54 | 186 |
| MS.gene09529.t1 | AT3G19390 | 35.928 | 334 | 164 | 13 | 105 | 417 | 38 | 342 | 2.41e-53 | 185 |
| MS.gene09529.t1 | AT2G34080 | 35.583 | 326 | 161 | 12 | 109 | 412 | 38 | 336 | 8.10e-53 | 181 |
| MS.gene09529.t1 | AT1G09850 | 35.647 | 317 | 177 | 9 | 110 | 417 | 32 | 330 | 1.76e-52 | 182 |
| MS.gene09529.t1 | AT5G50260 | 37.124 | 299 | 161 | 7 | 125 | 412 | 52 | 334 | 2.57e-52 | 179 |
| MS.gene09529.t1 | AT1G29080 | 36.991 | 319 | 169 | 12 | 113 | 417 | 42 | 342 | 9.88e-52 | 177 |
| MS.gene09529.t1 | AT4G23520 | 34.146 | 328 | 178 | 11 | 105 | 417 | 42 | 346 | 1.43e-51 | 177 |
| MS.gene09529.t1 | AT3G48340 | 37.417 | 302 | 147 | 11 | 130 | 412 | 57 | 335 | 1.58e-51 | 177 |
| MS.gene09529.t1 | AT3G43960 | 36.424 | 302 | 171 | 8 | 110 | 405 | 41 | 327 | 9.73e-49 | 171 |
| MS.gene09529.t1 | AT4G11320 | 35.238 | 315 | 173 | 9 | 110 | 412 | 56 | 351 | 1.20e-48 | 170 |
| MS.gene09529.t1 | AT4G11320 | 35.238 | 315 | 173 | 9 | 110 | 412 | 56 | 351 | 1.20e-48 | 170 |
| MS.gene09529.t1 | AT3G49340 | 33.333 | 327 | 175 | 12 | 108 | 415 | 33 | 335 | 1.48e-48 | 169 |
| MS.gene09529.t1 | AT4G11310 | 35.000 | 320 | 167 | 10 | 110 | 412 | 49 | 344 | 6.79e-48 | 168 |
| MS.gene09529.t1 | AT3G48350 | 32.231 | 363 | 207 | 13 | 87 | 431 | 13 | 354 | 3.36e-47 | 166 |
| MS.gene09529.t1 | AT4G35350 | 33.571 | 280 | 172 | 4 | 62 | 339 | 7 | 274 | 4.00e-47 | 164 |
| MS.gene09529.t1 | AT2G27420 | 32.229 | 332 | 173 | 10 | 108 | 412 | 33 | 339 | 6.66e-47 | 165 |
| MS.gene09529.t1 | AT3G19400 | 35.433 | 254 | 148 | 7 | 92 | 339 | 27 | 270 | 8.52e-41 | 147 |
| MS.gene09529.t1 | AT1G29110 | 33.016 | 315 | 166 | 11 | 113 | 412 | 41 | 325 | 2.02e-40 | 147 |
| MS.gene09529.t1 | AT3G48350 | 31.321 | 265 | 157 | 8 | 87 | 339 | 13 | 264 | 5.81e-33 | 126 |
| MS.gene09529.t1 | AT4G01610 | 25.887 | 282 | 166 | 12 | 157 | 412 | 66 | 330 | 8.19e-15 | 75.9 |
| MS.gene09529.t1 | AT1G02305 | 27.381 | 252 | 141 | 10 | 195 | 420 | 106 | 341 | 7.24e-14 | 73.2 |
| MS.gene09529.t1 | AT4G01610 | 25.532 | 282 | 167 | 12 | 157 | 412 | 66 | 330 | 8.52e-14 | 72.8 |
| MS.gene09529.t1 | AT1G02300 | 25.641 | 234 | 136 | 9 | 212 | 423 | 144 | 361 | 8.89e-11 | 63.9 |
Find 112 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTAAATAAGCAGCAATT+TGG | 0.276229 | 1.4:-73687510 | None:intergenic |
| CACAAGGTTTCTCGATTCTT+AGG | 0.295720 | 1.4:+73687869 | MS.gene09529:CDS |
| GCTTGAGGCTGGTGGATTAG+AGG | 0.315848 | 1.4:+73687381 | MS.gene09529:CDS |
| TTCCCTTGTAGAGTAAGTTT+TGG | 0.331460 | 1.4:-73685908 | None:intergenic |
| GAATTCTTGATGATCCAATA+TGG | 0.338546 | 1.4:-73687904 | None:intergenic |
| AGCCTCAAGCAAATAATTAT+AGG | 0.341198 | 1.4:-73687368 | None:intergenic |
| CCGCCATGAAAACTTGATTC+AGG | 0.341418 | 1.4:+73685804 | MS.gene09529:CDS |
| GGCTTCGCACGAAACCATAT+TGG | 0.343626 | 1.4:+73687890 | MS.gene09529:CDS |
| AACAGAACTAGGTAGCTAAT+AGG | 0.375008 | 1.4:-73688058 | None:intergenic |
| TGGCGAGGTTGCACCGCCCT+TGG | 0.391848 | 1.4:+73686104 | MS.gene09529:CDS |
| GATAAGACATCATGTGATAA+TGG | 0.394339 | 1.4:+73687319 | MS.gene09529:CDS |
| GGCGGTGAAACGCAGTTGAT+AGG | 0.395575 | 1.4:-73685786 | None:intergenic |
| CTTGATCCAACCGCAATTCA+TGG | 0.398823 | 1.4:+73685994 | MS.gene09529:CDS |
| TATAATTATTTGCTTGAGGC+TGG | 0.400349 | 1.4:+73687370 | MS.gene09529:CDS |
| TGTGGCAGTTGGTGAGATGA+GGG | 0.406134 | 1.4:-73685585 | None:intergenic |
| GTGTGATTGGAGGGGAAAGG+TGG | 0.412600 | 1.4:-73685562 | None:intergenic |
| GTTCTCATCCACAGGTAGAT+TGG | 0.415931 | 1.4:-73687488 | None:intergenic |
| AGGGTAAATGTGGATCTTGC+TGG | 0.419704 | 1.4:+73686959 | MS.gene09529:intron |
| ATTCTCTTGCTACATATAAG+AGG | 0.422987 | 1.4:-73687811 | None:intergenic |
| GGTTGCACCGCCCTTGGATG+TGG | 0.428740 | 1.4:+73686110 | MS.gene09529:CDS |
| CGGTTCTATACCGGTGTTAG+AGG | 0.429375 | 1.4:+73686057 | MS.gene09529:CDS |
| CTTGGATGTGGAAGGATTGC+CGG | 0.431739 | 1.4:+73686122 | MS.gene09529:CDS |
| GGTGAGATGAGGGGTGTGAT+TGG | 0.434233 | 1.4:-73685575 | None:intergenic |
| AAGAGTATTTACTACGCCTT+GGG | 0.438150 | 1.4:+73685929 | MS.gene09529:CDS |
| TGCTGGGCTTTCAGCACTAC+AGG | 0.442971 | 1.4:+73686976 | MS.gene09529:CDS |
| ATACCCGTACACTGGTGGTA+AGG | 0.455502 | 1.4:+73687414 | MS.gene09529:CDS |
| CTTCCACGGAACTTGGATGG+TGG | 0.457791 | 1.4:-73685661 | None:intergenic |
| ATGTATGTGGTTGTGGCAGT+TGG | 0.464254 | 1.4:-73685596 | None:intergenic |
| GAGATGAGGGGTGTGATTGG+AGG | 0.467602 | 1.4:-73685572 | None:intergenic |
| AGCACTACAGGATCTATAGA+AGG | 0.470148 | 1.4:+73686988 | MS.gene09529:CDS |
| TTGTGGCAGTTGGTGAGATG+AGG | 0.470662 | 1.4:-73685586 | None:intergenic |
| GAGTTTGAGCGGTTCTATAC+CGG | 0.478459 | 1.4:+73686048 | MS.gene09529:CDS |
| GAAGAGTATTTACTACGCCT+TGG | 0.482670 | 1.4:+73685928 | MS.gene09529:CDS |
| GAATTTCGATTGGAGGGAGA+AGG | 0.483095 | 1.4:+73686146 | MS.gene09529:CDS |
| AGATGAGGGGTGTGATTGGA+GGG | 0.487374 | 1.4:-73685571 | None:intergenic |
| AATTTCGATTGGAGGGAGAA+GGG | 0.491914 | 1.4:+73686147 | MS.gene09529:CDS |
| TCATGTGATAATGGTTGTAA+TGG | 0.500611 | 1.4:+73687328 | MS.gene09529:CDS |
| TTCCACGGAACTTGGATGGT+GGG | 0.502806 | 1.4:-73685660 | None:intergenic |
| TGCCGGAGAATTTCGATTGG+AGG | 0.504986 | 1.4:+73686139 | MS.gene09529:CDS |
| TCCCTCCAATCGAAATTCTC+CGG | 0.505325 | 1.4:-73686141 | None:intergenic |
| GCCGGAGAATTTCGATTGGA+GGG | 0.506193 | 1.4:+73686140 | MS.gene09529:CDS |
| CGGCAATCCTTCCACATCCA+AGG | 0.507533 | 1.4:-73686121 | None:intergenic |
| ACTCCAAAACTTACTCTACA+AGG | 0.509081 | 1.4:+73685905 | MS.gene09529:CDS |
| GGTGGATTCCCCTCGAGAAA+CGG | 0.509587 | 1.4:+73686078 | MS.gene09529:CDS |
| AACCACGGTGTATTGCTTGT+GGG | 0.510752 | 1.4:+73687838 | MS.gene09529:CDS |
| TCCACGGAACTTGGATGGTG+GGG | 0.511670 | 1.4:-73685659 | None:intergenic |
| AATTATTTGCTTGAGGCTGG+TGG | 0.514952 | 1.4:+73687373 | MS.gene09529:CDS |
| GCAATTTGGTTCTCATCCAC+AGG | 0.515183 | 1.4:-73687496 | None:intergenic |
| TTCTATACCGGTGTTAGAGG+TGG | 0.515332 | 1.4:+73686060 | MS.gene09529:CDS |
| TGCCTATAATTATTTGCTTG+AGG | 0.515816 | 1.4:+73687366 | MS.gene09529:CDS |
| GATTGCCGGAGAATTTCGAT+TGG | 0.521822 | 1.4:+73686136 | MS.gene09529:CDS |
| TTCATGCAAACTTACATTGG+TGG | 0.523262 | 1.4:+73687778 | MS.gene09529:CDS |
| TACATGCTTTGCAGAGGGCA+TGG | 0.526511 | 1.4:+73687958 | MS.gene09529:CDS |
| TCACCCTTACCACCAGTGTA+CGG | 0.527618 | 1.4:-73687418 | None:intergenic |
| CTCGCCAACGCCGTTTCTCG+AGG | 0.529239 | 1.4:-73686088 | None:intergenic |
| CACCCTTACCACCAGTGTAC+GGG | 0.533213 | 1.4:-73687417 | None:intergenic |
| GCTGCTTATTTAGTTAATCA+CGG | 0.543083 | 1.4:+73687517 | MS.gene09529:CDS |
| GCGGTGAAACGCAGTTGATA+GGG | 0.543444 | 1.4:-73685785 | None:intergenic |
| GGCAATCCTTCCACATCCAA+GGG | 0.544410 | 1.4:-73686120 | None:intergenic |
| CACAATGGTTTCTGCTGCAA+TGG | 0.544762 | 1.4:+73687996 | MS.gene09529:CDS |
| AATGGTTTCTGCTGCAATGG+TGG | 0.547337 | 1.4:+73687999 | MS.gene09529:CDS |
| GAACCACGGTGTATTGCTTG+TGG | 0.550119 | 1.4:+73687837 | MS.gene09529:CDS |
| CTTGTGGGTTATAATGCACA+AGG | 0.551826 | 1.4:+73687853 | MS.gene09529:CDS |
| ATTTCGATTGGAGGGAGAAG+GGG | 0.553540 | 1.4:+73686148 | MS.gene09529:CDS |
| TTGCTTCCACGGAACTTGGA+TGG | 0.554287 | 1.4:-73685664 | None:intergenic |
| GCACCGCCCTTGGATGTGGA+AGG | 0.555789 | 1.4:+73686114 | MS.gene09529:CDS |
| AGCGTTTATGTATGTGGTTG+TGG | 0.557465 | 1.4:-73685603 | None:intergenic |
| GGGTAAATGTGGATCTTGCT+GGG | 0.557750 | 1.4:+73686960 | MS.gene09529:intron |
| CTCGAGAAACGGCGTTGGCG+AGG | 0.558836 | 1.4:+73686089 | MS.gene09529:CDS |
| CCACGGAACTTGGATGGTGG+GGG | 0.559898 | 1.4:-73685658 | None:intergenic |
| CGCCAACGCCGTTTCTCGAG+GGG | 0.562109 | 1.4:-73686086 | None:intergenic |
| TTGCGGTTGGATCAAGTGCT+TGG | 0.562169 | 1.4:-73685987 | None:intergenic |
| TTTCGATTGGAGGGAGAAGG+GGG | 0.564832 | 1.4:+73686149 | MS.gene09529:CDS |
| GTGGCAGTTGGTGAGATGAG+GGG | 0.565267 | 1.4:-73685584 | None:intergenic |
| AAACACGTGAGAGATATGAT+TGG | 0.566506 | 1.4:-73685730 | None:intergenic |
| ATATAGAGCGTTTATGTATG+TGG | 0.567469 | 1.4:-73685609 | None:intergenic |
| TAAGGGGACTTACTTGCAAG+TGG | 0.568709 | 1.4:-73687541 | None:intergenic |
| TTGGATCATCAAGAATTCGT+GGG | 0.578311 | 1.4:+73687909 | MS.gene09529:CDS |
| TACCCGTACACTGGTGGTAA+GGG | 0.579815 | 1.4:+73687415 | MS.gene09529:CDS |
| CGTGGAAGCAAAACAGAGGA+AGG | 0.580012 | 1.4:+73685676 | MS.gene09529:CDS |
| TCGCCAACGCCGTTTCTCGA+GGG | 0.584995 | 1.4:-73686087 | None:intergenic |
| TTCTCTTGCTACATATAAGA+GGG | 0.587349 | 1.4:-73687810 | None:intergenic |
| TTCCCCTCGAGAAACGGCGT+TGG | 0.589822 | 1.4:+73686084 | MS.gene09529:CDS |
| GATGAGGGGTGTGATTGGAG+GGG | 0.598154 | 1.4:-73685570 | None:intergenic |
| TAACACTAGCAGCACAGCGA+TGG | 0.604170 | 1.4:+73685699 | MS.gene09529:CDS |
| GGTATTACATGCTTTGCAGA+GGG | 0.604656 | 1.4:+73687953 | MS.gene09529:CDS |
| GTAACACCATGAATTGCGGT+TGG | 0.604723 | 1.4:-73686000 | None:intergenic |
| ATTGGATCATCAAGAATTCG+TGG | 0.604812 | 1.4:+73687908 | MS.gene09529:CDS |
| TGTTACTGGAGTCAAGATGC+AGG | 0.607732 | 1.4:+73686173 | MS.gene09529:CDS |
| GGGGAATCCACCTCTAACAC+CGG | 0.613162 | 1.4:-73686067 | None:intergenic |
| TGCAGAGGGCATGGTATGTG+TGG | 0.615133 | 1.4:+73687967 | MS.gene09529:CDS |
| TCTTAGTGAACAACAGCTTG+TGG | 0.616431 | 1.4:+73687044 | MS.gene09529:CDS |
| GGGTATTACATGCTTTGCAG+AGG | 0.620670 | 1.4:+73687952 | MS.gene09529:CDS |
| GCTTGTGGACTGTGACAGCA+AGG | 0.622428 | 1.4:+73687059 | MS.gene09529:CDS |
| CTCCAAAACTTACTCTACAA+GGG | 0.624411 | 1.4:+73685906 | MS.gene09529:CDS |
| GGGGTGTGATTGGAGGGGAA+AGG | 0.626005 | 1.4:-73685565 | None:intergenic |
| GAAACTTCATACCCGTACAC+TGG | 0.628584 | 1.4:+73687406 | MS.gene09529:CDS |
| CTGAGTAACACCATGAATTG+CGG | 0.643000 | 1.4:-73686004 | None:intergenic |
| TGTGATAATGGTTGTAATGG+AGG | 0.643668 | 1.4:+73687331 | MS.gene09529:CDS |
| GTTCTCTGATCTCTCTGACG+AGG | 0.654499 | 1.4:+73686026 | MS.gene09529:CDS |
| TGAGGCTGGTGGATTAGAGG+AGG | 0.654720 | 1.4:+73687384 | MS.gene09529:CDS |
| ACTTCATACCCGTACACTGG+TGG | 0.657388 | 1.4:+73687409 | MS.gene09529:CDS |
| AACGCTCTATATCTCAAACA+AGG | 0.661574 | 1.4:+73685620 | MS.gene09529:CDS |
| AATCCTTCCACATCCAAGGG+CGG | 0.664048 | 1.4:-73686117 | None:intergenic |
| TTGATAGGGTTAGAGCGTAG+AGG | 0.669135 | 1.4:-73685771 | None:intergenic |
| TGGATCATCAAGAATTCGTG+GGG | 0.675621 | 1.4:+73687910 | MS.gene09529:CDS |
| AAATTTCACCAATCTACCTG+TGG | 0.676633 | 1.4:+73687480 | MS.gene09529:CDS |
| TCTCTGACGAGGAGTTTGAG+CGG | 0.687292 | 1.4:+73686037 | MS.gene09529:CDS |
| AGCAAGAGAATGCTGAACCA+CGG | 0.698635 | 1.4:+73687823 | MS.gene09529:CDS |
| GTTCCGTGGAAGCAAAACAG+AGG | 0.717221 | 1.4:+73685672 | MS.gene09529:CDS |
| AACCCACAAGCAATACACCG+TGG | 0.800815 | 1.4:-73687840 | None:intergenic |
| TATGTGTGGAATGAACACAA+TGG | 0.864374 | 1.4:+73687981 | MS.gene09529:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAAAATTTTTATATT+TGG | + | chr1.4:73686506-73686525 | MS.gene09529:intron | 0.0% |
| !! | AAATAAAACAAAAAAAATTG+GGG | - | chr1.4:73686245-73686264 | None:intergenic | 10.0% |
| !! | CAAATAAAACAAAAAAAATT+GGG | - | chr1.4:73686246-73686265 | None:intergenic | 10.0% |
| !! | TCAAATAAAACAAAAAAAAT+TGG | - | chr1.4:73686247-73686266 | None:intergenic | 10.0% |
| !!! | AAATTAAACAGTTTTTATTT+AGG | - | chr1.4:73686933-73686952 | None:intergenic | 10.0% |
| !! | AGAACTTTGTAATTAATTAA+GGG | - | chr1.4:73687561-73687580 | None:intergenic | 15.0% |
| !! | ATGATAAATAAACTTATTTG+AGG | - | chr1.4:73686321-73686340 | None:intergenic | 15.0% |
| !! | GTAGCTAAATATATATTATT+GGG | - | chr1.4:73686299-73686318 | None:intergenic | 15.0% |
| !! | TAGAACTTTGTAATTAATTA+AGG | - | chr1.4:73687562-73687581 | None:intergenic | 15.0% |
| !! | TAGCTAAATATATATTATTG+GGG | - | chr1.4:73686298-73686317 | None:intergenic | 15.0% |
| !!! | TATTTATGTTTCTAATGATT+AGG | + | chr1.4:73686818-73686837 | MS.gene09529:intron | 15.0% |
| !!! | TCTTATTTTTTGTATAGTTT+AGG | + | chr1.4:73686366-73686385 | MS.gene09529:intron | 15.0% |
| !!! | TTGTTTTTTTATTTACAATG+AGG | + | chr1.4:73686730-73686749 | MS.gene09529:intron | 15.0% |
| !! | AACTTAAATAAATTACATCC+CGG | - | chr1.4:73686844-73686863 | None:intergenic | 20.0% |
| !! | GAACTTTGTAATTAATTAAG+GGG | - | chr1.4:73687560-73687579 | None:intergenic | 20.0% |
| !! | GGTAGCTAAATATATATTAT+TGG | - | chr1.4:73686300-73686319 | None:intergenic | 20.0% |
| !! | TATAGAACATAGTTGTTAAT+TGG | - | chr1.4:73687137-73687156 | None:intergenic | 20.0% |
| !!! | AAACTGTTTAATTTTGAAAC+AGG | + | chr1.4:73686939-73686958 | MS.gene09529:intron | 20.0% |
| !!! | AACTGTTTAATTTTGAAACA+GGG | + | chr1.4:73686940-73686959 | MS.gene09529:intron | 20.0% |
| !!! | ATTTTAACTGCAATTTTCTT+TGG | - | chr1.4:73687457-73687476 | None:intergenic | 20.0% |
| !!! | TAATCTTCTGTTTTATTAAC+TGG | + | chr1.4:73687250-73687269 | MS.gene09529:intron | 20.0% |
| !!! | TTATTTAGGATAATGTTTCA+TGG | - | chr1.4:73686919-73686938 | None:intergenic | 20.0% |
| ! | CAAACTAGAAATTTCAAACA+TGG | - | chr1.4:73686618-73686637 | None:intergenic | 25.0% |
| ! | TAACTAAATAAGCAGCAATT+TGG | - | chr1.4:73687513-73687532 | None:intergenic | 25.0% |
| !!! | CATGTTTGAAATTTCTAGTT+TGG | + | chr1.4:73686616-73686635 | MS.gene09529:intron | 25.0% |
| AGCCTCAAGCAAATAATTAT+AGG | - | chr1.4:73687371-73687390 | None:intergenic | 30.0% | |
| ATTCTCTTGCTACATATAAG+AGG | - | chr1.4:73687814-73687833 | None:intergenic | 30.0% | |
| GATAAGACATCATGTGATAA+TGG | + | chr1.4:73687319-73687338 | MS.gene09529:CDS | 30.0% | |
| GCTGCTTATTTAGTTAATCA+CGG | + | chr1.4:73687517-73687536 | MS.gene09529:CDS | 30.0% | |
| TATAATTATTTGCTTGAGGC+TGG | + | chr1.4:73687370-73687389 | MS.gene09529:CDS | 30.0% | |
| TGCCTATAATTATTTGCTTG+AGG | + | chr1.4:73687366-73687385 | MS.gene09529:CDS | 30.0% | |
| TTCTCTTGCTACATATAAGA+GGG | - | chr1.4:73687813-73687832 | None:intergenic | 30.0% | |
| ! | ATATAGAGCGTTTATGTATG+TGG | - | chr1.4:73685612-73685631 | None:intergenic | 30.0% |
| ! | GAATTCTTGATGATCCAATA+TGG | - | chr1.4:73687907-73687926 | None:intergenic | 30.0% |
| ! | GTTTTCATGCAAACTTACAT+TGG | + | chr1.4:73687775-73687794 | MS.gene09529:CDS | 30.0% |
| ! | TATGTTTCTAATGATTAGGC+CGG | + | chr1.4:73686822-73686841 | MS.gene09529:intron | 30.0% |
| !! | TCATGTGATAATGGTTGTAA+TGG | + | chr1.4:73687328-73687347 | MS.gene09529:CDS | 30.0% |
| !!! | ATTTTGAAACAGGGTAAATG+TGG | + | chr1.4:73686949-73686968 | MS.gene09529:intron | 30.0% |
| AAACACGTGAGAGATATGAT+TGG | - | chr1.4:73685733-73685752 | None:intergenic | 35.0% | |
| AAATTTCACCAATCTACCTG+TGG | + | chr1.4:73687480-73687499 | MS.gene09529:CDS | 35.0% | |
| AACGCTCTATATCTCAAACA+AGG | + | chr1.4:73685620-73685639 | MS.gene09529:CDS | 35.0% | |
| ACTCCAAAACTTACTCTACA+AGG | + | chr1.4:73685905-73685924 | MS.gene09529:CDS | 35.0% | |
| ATTGGATCATCAAGAATTCG+TGG | + | chr1.4:73687908-73687927 | MS.gene09529:CDS | 35.0% | |
| CAAAAACTTGGTAAAAGCTG+TGG | + | chr1.4:73685960-73685979 | MS.gene09529:CDS | 35.0% | |
| CGAAGCTAAGTTAAACCTAT+GGG | + | chr1.4:73686206-73686225 | MS.gene09529:intron | 35.0% | |
| CTCCAAAACTTACTCTACAA+GGG | + | chr1.4:73685906-73685925 | MS.gene09529:CDS | 35.0% | |
| GAAGCTAAGTTAAACCTATG+GGG | + | chr1.4:73686207-73686226 | MS.gene09529:intron | 35.0% | |
| GAGAAAAATGGGGAGAAAAA+GGG | + | chr1.4:73687932-73687951 | MS.gene09529:CDS | 35.0% | |
| GATGAATTGCGAAACTTAGA+CGG | + | chr1.4:73687598-73687617 | MS.gene09529:intron | 35.0% | |
| TATGTGTGGAATGAACACAA+TGG | + | chr1.4:73687981-73688000 | MS.gene09529:CDS | 35.0% | |
| TGTTATGTCACACTTGACAA+AGG | - | chr1.4:73687299-73687318 | None:intergenic | 35.0% | |
| TTCATGCAAACTTACATTGG+TGG | + | chr1.4:73687778-73687797 | MS.gene09529:CDS | 35.0% | |
| TTGGATCATCAAGAATTCGT+GGG | + | chr1.4:73687909-73687928 | MS.gene09529:CDS | 35.0% | |
| ! | AAGATTAGCAAGAGCATAGT+TGG | - | chr1.4:73687237-73687256 | None:intergenic | 35.0% |
| ! | ATGTTTCTAATGATTAGGCC+GGG | + | chr1.4:73686823-73686842 | MS.gene09529:intron | 35.0% |
| ! | CACAGCTTTTACCAAGTTTT+TGG | - | chr1.4:73685962-73685981 | None:intergenic | 35.0% |
| ! | CATCCTGAATCAAGTTTTCA+TGG | - | chr1.4:73685810-73685829 | None:intergenic | 35.0% |
| ! | TGGGATTTTTGCCAAAAACT+TGG | + | chr1.4:73685948-73685967 | MS.gene09529:CDS | 35.0% |
| ! | TTCCCTTGTAGAGTAAGTTT+TGG | - | chr1.4:73685911-73685930 | None:intergenic | 35.0% |
| ! | TTTTCCTGTGGCAAGAAAAT+TGG | - | chr1.4:73687016-73687035 | None:intergenic | 35.0% |
| !! | AAGAGTATTTACTACGCCTT+GGG | + | chr1.4:73685929-73685948 | MS.gene09529:CDS | 35.0% |
| !! | TGTGATAATGGTTGTAATGG+AGG | + | chr1.4:73687331-73687350 | MS.gene09529:CDS | 35.0% |
| !!! | AAGCTAGCAACTTTTTTACG+AGG | - | chr1.4:73686535-73686554 | None:intergenic | 35.0% |
| !!! | AGCTAGCAACTTTTTTACGA+GGG | - | chr1.4:73686534-73686553 | None:intergenic | 35.0% |
| !!! | AGTTTTTGGCAAAAATCCCA+AGG | - | chr1.4:73685948-73685967 | None:intergenic | 35.0% |
| !!! | GCATATGATTTGTTTTCAGC+AGG | - | chr1.4:73688036-73688055 | None:intergenic | 35.0% |
| AACTCTAATCATGTGCAGTG+GGG | + | chr1.4:73687743-73687762 | MS.gene09529:intron | 40.0% | |
| AATTATTTGCTTGAGGCTGG+TGG | + | chr1.4:73687373-73687392 | MS.gene09529:CDS | 40.0% | |
| AATTCGTGGGGAGAAAAATG+GGG | + | chr1.4:73687922-73687941 | MS.gene09529:CDS | 40.0% | |
| AATTTCGATTGGAGGGAGAA+GGG | + | chr1.4:73686147-73686166 | MS.gene09529:CDS | 40.0% | |
| AGAATTCGTGGGGAGAAAAA+TGG | + | chr1.4:73687920-73687939 | MS.gene09529:CDS | 40.0% | |
| AGCACTACAGGATCTATAGA+AGG | + | chr1.4:73686988-73687007 | MS.gene09529:CDS | 40.0% | |
| AGCGTTTATGTATGTGGTTG+TGG | - | chr1.4:73685606-73685625 | None:intergenic | 40.0% | |
| CACAAGGTTTCTCGATTCTT+AGG | + | chr1.4:73687869-73687888 | MS.gene09529:CDS | 40.0% | |
| CTGAGTAACACCATGAATTG+CGG | - | chr1.4:73686007-73686026 | None:intergenic | 40.0% | |
| GAACTCTAATCATGTGCAGT+GGG | + | chr1.4:73687742-73687761 | MS.gene09529:intron | 40.0% | |
| GAATTCGTGGGGAGAAAAAT+GGG | + | chr1.4:73687921-73687940 | MS.gene09529:CDS | 40.0% | |
| GCGAAGCTAAGTTAAACCTA+TGG | + | chr1.4:73686205-73686224 | MS.gene09529:intron | 40.0% | |
| GGAGAAAAATGGGGAGAAAA+AGG | + | chr1.4:73687931-73687950 | MS.gene09529:CDS | 40.0% | |
| GGTATTACATGCTTTGCAGA+GGG | + | chr1.4:73687953-73687972 | MS.gene09529:CDS | 40.0% | |
| TCTTAGTGAACAACAGCTTG+TGG | + | chr1.4:73687044-73687063 | MS.gene09529:CDS | 40.0% | |
| TGAACTCTAATCATGTGCAG+TGG | + | chr1.4:73687741-73687760 | MS.gene09529:intron | 40.0% | |
| TGGATCATCAAGAATTCGTG+GGG | + | chr1.4:73687910-73687929 | MS.gene09529:CDS | 40.0% | |
| TTAAACCTATGGGGTAGCAT+TGG | + | chr1.4:73686216-73686235 | MS.gene09529:intron | 40.0% | |
| ! | AAGACTGAGTAGTTTTCCTG+TGG | - | chr1.4:73687028-73687047 | None:intergenic | 40.0% |
| ! | CCTGAATCAAGTTTTCATGG+CGG | - | chr1.4:73685807-73685826 | None:intergenic | 40.0% |
| ! | CTTGTGGGTTATAATGCACA+AGG | + | chr1.4:73687853-73687872 | MS.gene09529:CDS | 40.0% |
| !! | GAAGAGTATTTACTACGCCT+TGG | + | chr1.4:73685928-73685947 | MS.gene09529:CDS | 40.0% |
| !!! | CTAGCAACTTTTTTACGAGG+GGG | - | chr1.4:73686532-73686551 | None:intergenic | 40.0% |
| !!! | GCTAGCAACTTTTTTACGAG+GGG | - | chr1.4:73686533-73686552 | None:intergenic | 40.0% |
| AACCACGGTGTATTGCTTGT+GGG | + | chr1.4:73687838-73687857 | MS.gene09529:CDS | 45.0% | |
| AATGGTTTCTGCTGCAATGG+TGG | + | chr1.4:73687999-73688018 | MS.gene09529:CDS | 45.0% | |
| ACTCTAATCATGTGCAGTGG+GGG | + | chr1.4:73687744-73687763 | MS.gene09529:intron | 45.0% | |
| AGCAAGAGAATGCTGAACCA+CGG | + | chr1.4:73687823-73687842 | MS.gene09529:CDS | 45.0% | |
| AGGGTAAATGTGGATCTTGC+TGG | + | chr1.4:73686959-73686978 | MS.gene09529:intron | 45.0% | |
| AGTCAAGATGCAGGTACACA+GGG | + | chr1.4:73686182-73686201 | MS.gene09529:intron | 45.0% | |
| ATGTATGTGGTTGTGGCAGT+TGG | - | chr1.4:73685599-73685618 | None:intergenic | 45.0% | |
| ATTTCGATTGGAGGGAGAAG+GGG | + | chr1.4:73686148-73686167 | MS.gene09529:CDS | 45.0% | |
| CACAATGGTTTCTGCTGCAA+TGG | + | chr1.4:73687996-73688015 | MS.gene09529:CDS | 45.0% | |
| CCGCCATGAAAACTTGATTC+AGG | + | chr1.4:73685804-73685823 | MS.gene09529:CDS | 45.0% | |
| CTATGTAACACCGACACTTC+AGG | - | chr1.4:73687676-73687695 | None:intergenic | 45.0% | |
| CTTGATCCAACCGCAATTCA+TGG | + | chr1.4:73685994-73686013 | MS.gene09529:CDS | 45.0% | |
| GAAACTTCATACCCGTACAC+TGG | + | chr1.4:73687406-73687425 | MS.gene09529:CDS | 45.0% | |
| GAATTTCGATTGGAGGGAGA+AGG | + | chr1.4:73686146-73686165 | MS.gene09529:CDS | 45.0% | |
| GAGTTTGAGCGGTTCTATAC+CGG | + | chr1.4:73686048-73686067 | MS.gene09529:CDS | 45.0% | |
| GATTGCCGGAGAATTTCGAT+TGG | + | chr1.4:73686136-73686155 | MS.gene09529:CDS | 45.0% | |
| GGGTAAATGTGGATCTTGCT+GGG | + | chr1.4:73686960-73686979 | MS.gene09529:intron | 45.0% | |
| GGGTATTACATGCTTTGCAG+AGG | + | chr1.4:73687952-73687971 | MS.gene09529:CDS | 45.0% | |
| GTAACACCATGAATTGCGGT+TGG | - | chr1.4:73686003-73686022 | None:intergenic | 45.0% | |
| GTTCTCATCCACAGGTAGAT+TGG | - | chr1.4:73687491-73687510 | None:intergenic | 45.0% | |
| TAAGGGGACTTACTTGCAAG+TGG | - | chr1.4:73687544-73687563 | None:intergenic | 45.0% | |
| TCCCTCCAATCGAAATTCTC+CGG | - | chr1.4:73686144-73686163 | None:intergenic | 45.0% | |
| TGTTACTGGAGTCAAGATGC+AGG | + | chr1.4:73686173-73686192 | MS.gene09529:CDS | 45.0% | |
| TTGATAGGGTTAGAGCGTAG+AGG | - | chr1.4:73685774-73685793 | None:intergenic | 45.0% | |
| ! | CTTCCTCTGTTTTGCTTCCA+CGG | - | chr1.4:73685678-73685697 | None:intergenic | 45.0% |
| ! | TGTTTTGCTTCCACGGAACT+TGG | - | chr1.4:73685671-73685690 | None:intergenic | 45.0% |
| ! | TTCTATACCGGTGTTAGAGG+TGG | + | chr1.4:73686060-73686079 | MS.gene09529:CDS | 45.0% |
| !! | GCAATTTGGTTCTCATCCAC+AGG | - | chr1.4:73687499-73687518 | None:intergenic | 45.0% |
| !!! | TCTTTTAAATAAAAAAAAAA+TGG | + | chr1.4:73686890-73686909 | MS.gene09529:intron | 5.0% |
| AACCCACAAGCAATACACCG+TGG | - | chr1.4:73687843-73687862 | None:intergenic | 50.0% | |
| AATCCTTCCACATCCAAGGG+CGG | - | chr1.4:73686120-73686139 | None:intergenic | 50.0% | |
| ACTCATGCATGTACCTGCAG+CGG | - | chr1.4:73686560-73686579 | None:intergenic | 50.0% | |
| ACTTCATACCCGTACACTGG+TGG | + | chr1.4:73687409-73687428 | MS.gene09529:CDS | 50.0% | |
| ATACCCGTACACTGGTGGTA+AGG | + | chr1.4:73687414-73687433 | MS.gene09529:CDS | 50.0% | |
| ATGTGCAGTGGGGGTAAATG+CGG | + | chr1.4:73687753-73687772 | MS.gene09529:intron | 50.0% | |
| CGTGGAAGCAAAACAGAGGA+AGG | + | chr1.4:73685676-73685695 | MS.gene09529:CDS | 50.0% | |
| CTCCGACAAACCTGAAGTGT+CGG | + | chr1.4:73687663-73687682 | MS.gene09529:intron | 50.0% | |
| CTTGGATGTGGAAGGATTGC+CGG | + | chr1.4:73686122-73686141 | MS.gene09529:CDS | 50.0% | |
| GAACCACGGTGTATTGCTTG+TGG | + | chr1.4:73687837-73687856 | MS.gene09529:CDS | 50.0% | |
| GAGTCAAGATGCAGGTACAC+AGG | + | chr1.4:73686181-73686200 | MS.gene09529:intron | 50.0% | |
| GCCGGAGAATTTCGATTGGA+GGG | + | chr1.4:73686140-73686159 | MS.gene09529:CDS | 50.0% | |
| GGCAATCCTTCCACATCCAA+GGG | - | chr1.4:73686123-73686142 | None:intergenic | 50.0% | |
| GGCTTCGCACGAAACCATAT+TGG | + | chr1.4:73687890-73687909 | MS.gene09529:CDS | 50.0% | |
| GTCAAGATGCAGGTACACAG+GGG | + | chr1.4:73686183-73686202 | MS.gene09529:intron | 50.0% | |
| GTTCCGTGGAAGCAAAACAG+AGG | + | chr1.4:73685672-73685691 | MS.gene09529:CDS | 50.0% | |
| GTTCTCTGATCTCTCTGACG+AGG | + | chr1.4:73686026-73686045 | MS.gene09529:CDS | 50.0% | |
| TAACACTAGCAGCACAGCGA+TGG | + | chr1.4:73685699-73685718 | MS.gene09529:CDS | 50.0% | |
| TACATGCTTTGCAGAGGGCA+TGG | + | chr1.4:73687958-73687977 | MS.gene09529:CDS | 50.0% | |
| TACCCGTACACTGGTGGTAA+GGG | + | chr1.4:73687415-73687434 | MS.gene09529:CDS | 50.0% | |
| TCACCCTTACCACCAGTGTA+CGG | - | chr1.4:73687421-73687440 | None:intergenic | 50.0% | |
| TCTCTGACGAGGAGTTTGAG+CGG | + | chr1.4:73686037-73686056 | MS.gene09529:CDS | 50.0% | |
| TGCCGGAGAATTTCGATTGG+AGG | + | chr1.4:73686139-73686158 | MS.gene09529:CDS | 50.0% | |
| TTCCACGGAACTTGGATGGT+GGG | - | chr1.4:73685663-73685682 | None:intergenic | 50.0% | |
| TTGCGGTTGGATCAAGTGCT+TGG | - | chr1.4:73685990-73686009 | None:intergenic | 50.0% | |
| TTGCTTCCACGGAACTTGGA+TGG | - | chr1.4:73685667-73685686 | None:intergenic | 50.0% | |
| TTTCGATTGGAGGGAGAAGG+GGG | + | chr1.4:73686149-73686168 | MS.gene09529:CDS | 50.0% | |
| ! | AGATGAGGGGTGTGATTGGA+GGG | - | chr1.4:73685574-73685593 | None:intergenic | 50.0% |
| ! | CACCGACACTTCAGGTTTGT+CGG | - | chr1.4:73687668-73687687 | None:intergenic | 50.0% |
| ! | CGGTTCTATACCGGTGTTAG+AGG | + | chr1.4:73686057-73686076 | MS.gene09529:CDS | 50.0% |
| ! | GCGGTGAAACGCAGTTGATA+GGG | - | chr1.4:73685788-73685807 | None:intergenic | 50.0% |
| ! | GGAGCCAATTTTCTTGCCAC+AGG | + | chr1.4:73687009-73687028 | MS.gene09529:CDS | 50.0% |
| !! | AACTTGGATGGTGGGGGTAA+TGG | - | chr1.4:73685655-73685674 | None:intergenic | 50.0% |
| !! | TGTGGCAGTTGGTGAGATGA+GGG | - | chr1.4:73685588-73685607 | None:intergenic | 50.0% |
| !! | TTGTGGCAGTTGGTGAGATG+AGG | - | chr1.4:73685589-73685608 | None:intergenic | 50.0% |
| CACCCTTACCACCAGTGTAC+GGG | - | chr1.4:73687420-73687439 | None:intergenic | 55.0% | |
| CGGCAATCCTTCCACATCCA+AGG | - | chr1.4:73686124-73686143 | None:intergenic | 55.0% | |
| CTTCCACGGAACTTGGATGG+TGG | - | chr1.4:73685664-73685683 | None:intergenic | 55.0% | |
| GGCGGTGAAACGCAGTTGAT+AGG | - | chr1.4:73685789-73685808 | None:intergenic | 55.0% | |
| GGGGAATCCACCTCTAACAC+CGG | - | chr1.4:73686070-73686089 | None:intergenic | 55.0% | |
| GGTAGCCAATGCTACCCCAT+AGG | - | chr1.4:73686224-73686243 | None:intergenic | 55.0% | |
| GTGTGATTGGAGGGGAAAGG+TGG | - | chr1.4:73685565-73685584 | None:intergenic | 55.0% | |
| TCCACGGAACTTGGATGGTG+GGG | - | chr1.4:73685662-73685681 | None:intergenic | 55.0% | |
| TGCTGGGCTTTCAGCACTAC+AGG | + | chr1.4:73686976-73686995 | MS.gene09529:CDS | 55.0% | |
| ! | GAGATGAGGGGTGTGATTGG+AGG | - | chr1.4:73685575-73685594 | None:intergenic | 55.0% |
| ! | GATGAGGGGTGTGATTGGAG+GGG | - | chr1.4:73685573-73685592 | None:intergenic | 55.0% |
| ! | GCTTGTGGACTGTGACAGCA+AGG | + | chr1.4:73687059-73687078 | MS.gene09529:CDS | 55.0% |
| ! | GGTGAGATGAGGGGTGTGAT+TGG | - | chr1.4:73685578-73685597 | None:intergenic | 55.0% |
| ! | GGTGGATTCCCCTCGAGAAA+CGG | + | chr1.4:73686078-73686097 | MS.gene09529:CDS | 55.0% |
| ! | TGCAGAGGGCATGGTATGTG+TGG | + | chr1.4:73687967-73687986 | MS.gene09529:CDS | 55.0% |
| !! | GCTTGAGGCTGGTGGATTAG+AGG | + | chr1.4:73687381-73687400 | MS.gene09529:CDS | 55.0% |
| !! | GTGGCAGTTGGTGAGATGAG+GGG | - | chr1.4:73685587-73685606 | None:intergenic | 55.0% |
| !! | TGAGGCTGGTGGATTAGAGG+AGG | + | chr1.4:73687384-73687403 | MS.gene09529:CDS | 55.0% |
| AGGGAGAAGGGGGCTGTTAC+TGG | + | chr1.4:73686159-73686178 | MS.gene09529:CDS | 60.0% | |
| GGGGTGTGATTGGAGGGGAA+AGG | - | chr1.4:73685568-73685587 | None:intergenic | 60.0% | |
| TCGCCAACGCCGTTTCTCGA+GGG | - | chr1.4:73686090-73686109 | None:intergenic | 60.0% | |
| TTCCCCTCGAGAAACGGCGT+TGG | + | chr1.4:73686084-73686103 | MS.gene09529:CDS | 60.0% | |
| ! | CCACGGAACTTGGATGGTGG+GGG | - | chr1.4:73685661-73685680 | None:intergenic | 60.0% |
| CCCCCACCATCCAAGTTCCG+TGG | + | chr1.4:73685658-73685677 | MS.gene09529:CDS | 65.0% | |
| CGCCAACGCCGTTTCTCGAG+GGG | - | chr1.4:73686089-73686108 | None:intergenic | 65.0% | |
| CTCGCCAACGCCGTTTCTCG+AGG | - | chr1.4:73686091-73686110 | None:intergenic | 65.0% | |
| GCACCGCCCTTGGATGTGGA+AGG | + | chr1.4:73686114-73686133 | MS.gene09529:CDS | 65.0% | |
| GGTTGCACCGCCCTTGGATG+TGG | + | chr1.4:73686110-73686129 | MS.gene09529:CDS | 65.0% | |
| ! | GTTGCTAGCTTCGCCGCTGC+AGG | + | chr1.4:73686544-73686563 | MS.gene09529:intron | 65.0% |
| !! | CTCGAGAAACGGCGTTGGCG+AGG | + | chr1.4:73686089-73686108 | MS.gene09529:CDS | 65.0% |
| TGGCGAGGTTGCACCGCCCT+TGG | + | chr1.4:73686104-73686123 | MS.gene09529:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 73685556 | 73688065 | 73685556 | ID=MS.gene09529 |
| chr1.4 | mRNA | 73685556 | 73688065 | 73685556 | ID=MS.gene09529.t1;Parent=MS.gene09529 |
| chr1.4 | exon | 73685556 | 73686194 | 73685556 | ID=MS.gene09529.t1.exon1;Parent=MS.gene09529.t1 |
| chr1.4 | CDS | 73685556 | 73686194 | 73685556 | ID=cds.MS.gene09529.t1;Parent=MS.gene09529.t1 |
| chr1.4 | exon | 73686961 | 73687080 | 73686961 | ID=MS.gene09529.t1.exon2;Parent=MS.gene09529.t1 |
| chr1.4 | CDS | 73686961 | 73687080 | 73686961 | ID=cds.MS.gene09529.t1;Parent=MS.gene09529.t1 |
| chr1.4 | exon | 73687307 | 73687550 | 73687307 | ID=MS.gene09529.t1.exon3;Parent=MS.gene09529.t1 |
| chr1.4 | CDS | 73687307 | 73687550 | 73687307 | ID=cds.MS.gene09529.t1;Parent=MS.gene09529.t1 |
| chr1.4 | exon | 73687761 | 73688065 | 73687761 | ID=MS.gene09529.t1.exon4;Parent=MS.gene09529.t1 |
| chr1.4 | CDS | 73687761 | 73688065 | 73687761 | ID=cds.MS.gene09529.t1;Parent=MS.gene09529.t1 |
| Gene Sequence |
| Protein sequence |