AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31410.t1 MTR_2g090890 93.491 338 22 0 1 338 1 338 0.0 673
MS.gene31410.t1 MTR_4g079440 61.947 339 126 2 1 336 6 344 1.36e-158 447
MS.gene31410.t1 MTR_5g022560 51.917 339 149 5 5 335 10 342 9.06e-120 349
MS.gene31410.t1 MTR_4g107930 52.252 333 152 4 10 335 11 343 3.95e-119 347
MS.gene31410.t1 MTR_3g075390 51.009 347 157 5 3 338 2 346 4.13e-119 348
MS.gene31410.t1 MTR_4g079770 51.724 319 148 3 23 335 25 343 2.71e-116 340
MS.gene31410.t1 MTR_4g047610 53.398 309 137 3 35 336 34 342 7.62e-116 339
MS.gene31410.t1 MTR_4g079470 53.770 305 135 3 37 335 39 343 5.49e-115 337
MS.gene31410.t1 MTR_4g094918 47.246 345 168 6 4 338 3 343 7.73e-115 337
MS.gene31410.t1 MTR_4g079800 50.938 320 151 3 23 336 25 344 3.14e-114 335
MS.gene31410.t1 MTR_4g080730 51.645 304 143 3 35 335 36 338 3.85e-114 335
MS.gene31410.t1 MTR_1g107550 51.923 312 140 4 35 337 46 356 8.96e-113 336
MS.gene31410.t1 MTR_4g080700 51.316 304 144 3 35 335 36 338 8.94e-112 328
MS.gene31410.t1 MTR_4g104370 52.922 308 133 6 39 337 40 344 5.48e-109 322
MS.gene31410.t1 MTR_1g018840 48.318 327 157 5 22 338 39 363 2.38e-108 324
MS.gene31410.t1 MTR_1g018840 48.318 327 157 5 22 338 39 363 4.25e-108 324
MS.gene31410.t1 MTR_3g102220 50.159 315 144 5 35 337 49 362 7.26e-107 321
MS.gene31410.t1 MTR_2g075830 50.980 306 144 4 35 335 35 339 1.85e-106 315
MS.gene31410.t1 MTR_4g080360 46.429 336 170 5 9 336 8 341 3.21e-105 312
MS.gene31410.t1 MTR_3g116080 50.987 304 142 3 39 337 47 348 9.62e-105 311
MS.gene31410.t1 MTR_2g083930 46.965 313 155 3 35 336 31 343 3.99e-102 304
MS.gene31410.t1 MTR_3g112430 48.710 310 149 3 37 337 34 342 2.17e-98 298
MS.gene31410.t1 MTR_7g078600 48.718 312 147 8 31 336 33 337 5.80e-96 288
MS.gene31410.t1 MTR_7g079230 44.048 336 180 5 2 335 5 334 2.66e-92 279
MS.gene31410.t1 MTR_2g016180 41.290 310 169 5 39 338 51 357 8.48e-80 251
MS.gene31410.t1 MTR_2g016270 41.558 308 160 6 37 338 49 342 5.46e-79 249
MS.gene31410.t1 MTR_2g015850 45.172 290 147 7 55 336 78 363 2.26e-77 241
MS.gene31410.t1 MTR_4g065077 39.276 359 184 13 1 337 11 357 1.38e-73 232
MS.gene31410.t1 MTR_2g015920 40.952 315 164 9 39 338 53 360 1.13e-72 229
MS.gene31410.t1 MTR_4g125300 42.434 304 163 7 39 336 51 348 3.09e-69 220
MS.gene31410.t1 MTR_2g067900 43.082 318 156 11 38 336 15 326 3.84e-69 219
MS.gene31410.t1 MTR_2g015930 39.157 332 179 10 22 338 37 360 2.36e-67 216
MS.gene31410.t1 MTR_8g086470 38.418 354 170 13 5 337 31 357 7.11e-67 214
MS.gene31410.t1 MTR_2g067560 41.509 318 152 12 38 330 15 323 1.63e-62 214
MS.gene31410.t1 MTR_2g064475 37.791 344 157 13 38 334 15 348 4.08e-61 199
MS.gene31410.t1 MTR_1g023210 37.248 298 165 7 39 317 51 345 8.57e-60 196
MS.gene31410.t1 MTR_1g094135 36.709 316 167 9 36 328 53 358 6.60e-59 194
MS.gene31410.t1 MTR_4g071060 34.203 345 188 8 4 317 5 341 1.11e-57 191
MS.gene31410.t1 MTR_2g066980 34.831 356 163 13 7 335 4 317 5.63e-56 185
MS.gene31410.t1 MTR_1g023810 44.292 219 114 6 119 334 48 261 3.58e-55 181
MS.gene31410.t1 MTR_7g078630 40.370 270 123 6 35 292 702 945 1.21e-52 186
MS.gene31410.t1 MTR_4g072790 31.231 333 179 10 2 317 6 305 5.96e-47 162
MS.gene31410.t1 MTR_4g073660 30.267 337 181 10 2 317 5 308 6.41e-45 156
MS.gene31410.t1 MTR_4g072340 33.106 293 153 9 38 317 47 309 1.13e-44 156
MS.gene31410.t1 MTR_1g025450 40.805 174 80 6 119 289 54 207 1.71e-34 132
MS.gene31410.t1 MTR_7g078580 53.465 101 45 2 239 338 4 103 5.71e-32 116
MS.gene31410.t1 MTR_7g079130 58.242 91 37 1 247 336 7 97 4.15e-31 113
MS.gene31410.t1 MTR_2g015840 50.450 111 53 2 226 335 161 270 1.73e-30 117
MS.gene31410.t1 MTR_2g015840 39.264 163 84 7 1 155 1 156 5.69e-27 107
MS.gene31410.t1 MTR_2g016380 39.024 123 71 2 219 338 16 137 6.13e-25 101
MS.gene31410.t1 MTR_7g111060 29.137 278 159 12 86 333 66 335 2.24e-24 102
MS.gene31410.t1 MTR_7g111050 30.742 283 154 14 86 335 63 336 2.55e-24 102
MS.gene31410.t1 MTR_7g078310 42.336 137 72 4 79 212 114 246 2.11e-23 97.8
MS.gene31410.t1 MTR_3g029560 29.245 212 121 6 131 336 49 237 4.39e-23 96.3
MS.gene31410.t1 MTR_8g087510 42.424 132 69 5 161 290 23 149 3.69e-20 86.7
MS.gene31410.t1 MTR_2g047960 50.633 79 38 1 130 208 8 85 3.63e-17 76.3
MS.gene31410.t1 MTR_7g111050 28.862 246 139 12 84 298 56 296 5.11e-15 74.7
MS.gene31410.t1 MTR_7g079260 47.222 72 21 2 263 333 7 62 3.16e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31410.t1 AT1G06260 52.663 338 155 3 3 337 8 343 1.91e-129 374
MS.gene31410.t1 AT3G48340 50.877 342 155 4 7 337 5 344 1.04e-116 342
MS.gene31410.t1 AT5G43060 51.713 321 147 4 24 337 35 354 2.12e-115 342
MS.gene31410.t1 AT5G45890 49.558 339 156 6 10 335 8 344 1.21e-114 336
MS.gene31410.t1 AT1G47128 48.997 349 161 6 6 338 7 354 1.62e-114 340
MS.gene31410.t1 AT5G50260 48.991 347 165 5 1 338 1 344 3.67e-113 333
MS.gene31410.t1 AT3G19390 48.680 341 167 6 4 337 7 346 9.75e-112 332
MS.gene31410.t1 AT4G35350 52.077 313 144 3 30 337 42 353 8.87e-109 322
MS.gene31410.t1 AT1G20850 51.803 305 140 2 39 337 51 354 6.64e-108 319
MS.gene31410.t1 AT3G19400 49.375 320 155 6 25 337 30 349 2.49e-106 315
MS.gene31410.t1 AT3G48350 48.138 349 164 7 1 337 1 344 6.49e-105 312
MS.gene31410.t1 AT4G36880 52.740 292 125 6 59 338 73 363 2.13e-104 311
MS.gene31410.t1 AT4G11310 47.403 308 152 3 39 338 49 354 1.72e-100 301
MS.gene31410.t1 AT4G11320 47.078 308 153 3 39 338 56 361 2.59e-99 298
MS.gene31410.t1 AT4G11320 47.078 308 153 3 39 338 56 361 2.59e-99 298
MS.gene31410.t1 AT2G27420 45.170 352 172 6 1 336 1 347 5.18e-99 296
MS.gene31410.t1 AT3G49340 45.906 342 168 7 8 336 3 340 1.89e-98 295
MS.gene31410.t1 AT1G09850 48.052 308 154 4 35 337 28 334 2.35e-97 295
MS.gene31410.t1 AT4G23520 41.329 346 192 6 1 338 9 351 2.36e-97 292
MS.gene31410.t1 AT2G34080 47.950 317 143 7 35 336 35 344 1.70e-94 285
MS.gene31410.t1 AT1G29080 43.605 344 175 9 5 336 9 345 1.93e-91 277
MS.gene31410.t1 AT1G29090 42.609 345 177 9 5 336 18 354 1.28e-86 265
MS.gene31410.t1 AT3G43960 43.168 322 171 8 26 337 28 347 4.55e-83 256
MS.gene31410.t1 AT4G35350 50.806 248 115 4 30 272 42 287 9.33e-78 240
MS.gene31410.t1 AT3G19400 50.202 247 113 7 27 266 35 278 3.98e-74 231
MS.gene31410.t1 AT5G60360 44.262 305 156 8 39 336 59 356 2.98e-73 231
MS.gene31410.t1 AT3G45310 39.118 363 187 10 1 336 1 356 8.66e-73 229
MS.gene31410.t1 AT1G29110 38.663 344 180 8 5 336 9 333 8.96e-73 229
MS.gene31410.t1 AT5G60360 43.607 305 157 8 39 336 59 355 5.56e-71 225
MS.gene31410.t1 AT3G45310 38.843 363 187 10 1 336 1 355 1.04e-70 224
MS.gene31410.t1 AT3G48350 45.035 282 139 6 1 271 1 277 6.51e-70 220
MS.gene31410.t1 AT5G60360 44.561 285 148 7 39 316 59 340 3.10e-69 221
MS.gene31410.t1 AT4G39090 36.184 304 172 6 32 315 42 343 1.82e-60 198
MS.gene31410.t1 AT2G21430 33.432 338 194 8 5 315 7 340 3.16e-59 194
MS.gene31410.t1 AT3G54940 36.601 306 164 8 36 317 48 347 1.55e-57 190
MS.gene31410.t1 AT4G16190 35.922 309 174 7 39 328 55 358 1.58e-51 175
MS.gene31410.t1 AT3G54940 36.957 230 132 4 36 253 48 276 5.18e-43 150
MS.gene31410.t1 AT1G02305 30.935 278 148 13 84 328 67 333 6.70e-26 106
MS.gene31410.t1 AT4G01610 28.623 276 157 12 84 328 64 330 3.45e-24 101
MS.gene31410.t1 AT4G01610 27.899 276 159 12 84 328 64 330 2.96e-22 96.3
MS.gene31410.t1 AT1G02300 30.516 213 117 9 139 328 146 350 1.15e-16 80.5
MS.gene31410.t1 AT2G22160 39.326 89 50 1 55 139 10 98 4.51e-13 65.1

Find 69 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCTTTGTGTGCATTTC+GGG 0.181188 2.4:-9609331 None:intergenic
TAATGTTATAGTTGTCTTCA+TGG 0.274993 2.4:-9609266 None:intergenic
TGAATTCTTTGTGTGCATTT+CGG 0.283355 2.4:-9609332 None:intergenic
TACCTCTTCTTCATGATTGC+AGG 0.284385 2.4:-9609361 None:intergenic
GCATTGTTATACTCAATCTA+TGG 0.301011 2.4:+9609290 MS.gene31410:CDS
TTACCGTCTCTTCCTGTATA+AGG 0.353740 2.4:-9610276 None:intergenic
GTTGGGTATGGAGAAGAAAA+TGG 0.381977 2.4:+9610507 MS.gene31410:CDS
GGCAAATGACTGGGGTGAAT+CGG 0.383051 2.4:+9610560 MS.gene31410:CDS
GAGTTCAAAAGCACCTATCT+AGG 0.384448 2.4:+9609547 MS.gene31410:CDS
CATGCTGCTTAATGCTTGAC+AGG 0.390203 2.4:-9610654 None:intergenic
TATTCAAAAGGTGTCTTCTC+TGG 0.393618 2.4:+9610447 MS.gene31410:CDS
GTCTCCATTGCAACTGATGC+TGG 0.400337 2.4:+9610405 MS.gene31410:CDS
ATTGGATTGTGAAGAATTCA+TGG 0.401875 2.4:+9610538 MS.gene31410:CDS
CTATATACTGAACATTTGAT+TGG 0.414116 2.4:-9609456 None:intergenic
AACCATGGCATGACTATAGT+TGG 0.415037 2.4:+9610489 MS.gene31410:CDS
AGAATTCATGGGCAAATGAC+TGG 0.416096 2.4:+9610550 MS.gene31410:CDS
TCAGCGGTGGCAGCTGTAGA+AGG 0.416880 2.4:+9610093 MS.gene31410:CDS
AAGAAAATGGTGAAAAGTAT+TGG 0.423887 2.4:+9610520 MS.gene31410:CDS
GGCATCAACAAGATCAAAAC+AGG 0.429365 2.4:+9610114 MS.gene31410:CDS
GCAAATGACTGGGGTGAATC+GGG 0.433050 2.4:+9610561 MS.gene31410:CDS
CCGAGGCAGAAAACCTAGAT+AGG 0.436245 2.4:-9609560 None:intergenic
CTTACAAGCTCAAAGACAAC+AGG 0.445738 2.4:+9609503 MS.gene31410:CDS
AACTACCGAAAAGCATAGAT+TGG 0.448513 2.4:+9609623 MS.gene31410:CDS
GCTAAAGAATATCCTTATAC+AGG 0.450987 2.4:+9610264 MS.gene31410:CDS
TTACAGAGACAGAGAAGAAT+GGG 0.469400 2.4:+9609414 MS.gene31410:CDS
ACTTGATGCAGGAAGTTGTT+GGG 0.479460 2.4:+9610065 MS.gene31410:intron
GGGGTGAATCGGGTTATATC+AGG 0.482885 2.4:+9610571 MS.gene31410:CDS
AGCATAGATTGGAGAAAGAA+TGG 0.483674 2.4:+9609634 MS.gene31410:CDS
GCATCAGTTGCAATGGAGAC+AGG 0.486545 2.4:-9610402 None:intergenic
CAGGATGAAACGTGATACTA+AGG 0.505062 2.4:+9610590 MS.gene31410:CDS
AACTTGATGCAGGAAGTTGT+TGG 0.520464 2.4:+9610064 MS.gene31410:intron
GGCATGACTATAGTTGGGTA+TGG 0.523474 2.4:+9610495 MS.gene31410:CDS
ACCATGGCATGACTATAGTT+GGG 0.527315 2.4:+9610490 MS.gene31410:CDS
AACAATGCTGTAACTATAAG+CGG 0.529987 2.4:+9610321 MS.gene31410:CDS
GTTACACACGTCAAAGATCA+AGG 0.535305 2.4:+9609661 MS.gene31410:CDS
ACCTCCAGCATCAGTTGCAA+TGG 0.538125 2.4:-9610409 None:intergenic
CTATAGTCATGCCATGGTTG+AGG 0.539074 2.4:-9610485 None:intergenic
ATTACAGAGACAGAGAAGAA+TGG 0.541853 2.4:+9609413 MS.gene31410:CDS
GAATTCATGGGCAAATGACT+GGG 0.555476 2.4:+9610551 MS.gene31410:CDS
ATAGATTGCGATACTAAAAG+TGG 0.565210 2.4:+9610168 MS.gene31410:CDS
GGGAACGAAGGCTGCAAAGG+TGG 0.565824 2.4:+9610189 MS.gene31410:CDS
ATCCTGCAATCATGAAGAAG+AGG 0.570589 2.4:+9609359 MS.gene31410:CDS
GAAACATGGCTGAAACGATA+CGG 0.571747 2.4:+9609385 MS.gene31410:CDS
CGTGATACTAAGGATAAAGA+CGG 0.580833 2.4:+9610600 MS.gene31410:CDS
GGTGTCTTCTCTGGAAGTTG+TGG 0.581965 2.4:+9610456 MS.gene31410:CDS
AGTGGGAACGAAGGCTGCAA+AGG 0.593884 2.4:+9610186 MS.gene31410:CDS
TTGGATTGTGAAGAATTCAT+GGG 0.600522 2.4:+9610539 MS.gene31410:CDS
CTTCTCTGGAAGTTGTGGAA+AGG 0.605603 2.4:+9610461 MS.gene31410:CDS
GACAGGGTATGTAGCATCCA+CGG 0.614493 2.4:-9610637 None:intergenic
ATAAGGATATTCTTTAGCAG+TGG 0.618035 2.4:-9610259 None:intergenic
TATCCTTATACAGGAAGAGA+CGG 0.621774 2.4:+9610273 MS.gene31410:CDS
TTGTTGGGCATTCTCAGCGG+TGG 0.623201 2.4:+9610080 MS.gene31410:CDS
GTGATACTAAGGATAAAGAC+GGG 0.625784 2.4:+9610601 MS.gene31410:CDS
CGGGACTTGTGGCATTGCCG+TGG 0.626460 2.4:+9610620 MS.gene31410:CDS
TCTGTTTGTGCACGAAACCG+AGG 0.626529 2.4:-9609577 None:intergenic
AAGGATAAAGACGGGACTTG+TGG 0.629104 2.4:+9610609 MS.gene31410:CDS
TGAAGAAGAGGTATGAAACA+TGG 0.632545 2.4:+9609371 MS.gene31410:CDS
GAATTCAGTTATCATAAACA+TGG 0.645354 2.4:+9609598 MS.gene31410:CDS
ACCCAACTATAGTCATGCCA+TGG 0.645927 2.4:-9610491 None:intergenic
TAGATTGCGATACTAAAAGT+GGG 0.654963 2.4:+9610169 MS.gene31410:CDS
GTCAAAGATCAAGGCCATTG+TGG 0.656255 2.4:+9609670 MS.gene31410:CDS
TTTGCAATAAACTACCACAA+TGG 0.657523 2.4:-9609684 None:intergenic
AAGAGACGGTAAGTGTAACA+AGG 0.663083 2.4:+9610287 MS.gene31410:CDS
TGTGGAAAGGACCTCAACCA+TGG 0.667027 2.4:+9610474 MS.gene31410:CDS
ATGCTGCTTAATGCTTGACA+GGG 0.670927 2.4:-9610653 None:intergenic
TCCATTGCAACTGATGCTGG+AGG 0.678137 2.4:+9610408 MS.gene31410:CDS
GATACTAAAAGTGGGAACGA+AGG 0.681544 2.4:+9610177 MS.gene31410:CDS
AAGTTGTTGGGCATTCTCAG+CGG 0.690067 2.4:+9610077 MS.gene31410:CDS
AATTCATGGGCAAATGACTG+GGG 0.692239 2.4:+9610552 MS.gene31410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGAAATTTATGTTTT+GGG + chr2.4:9610024-9610043 MS.gene31410:intron 10.0%
!!! AAATGAATAAACTTTTTTTG+AGG - chr2.4:9609740-9609759 None:intergenic 15.0%
!!! CATTTTTGAAATTTATGTTT+TGG + chr2.4:9610023-9610042 MS.gene31410:intron 15.0%
!! TTCAAATACATTTACTTGTT+AGG - chr2.4:9609951-9609970 None:intergenic 20.0%
!!! GCATTTCAATTTTATTCAAA+AGG + chr2.4:9610435-9610454 MS.gene31410:CDS 20.0%
! CTATATACTGAACATTTGAT+TGG - chr2.4:9609459-9609478 None:intergenic 25.0%
! GAATTCAGTTATCATAAACA+TGG + chr2.4:9609598-9609617 MS.gene31410:CDS 25.0%
! TTCAACTACATCAAAAAACA+CGG + chr2.4:9610228-9610247 MS.gene31410:CDS 25.0%
!! AAGAAAATGGTGAAAAGTAT+TGG + chr2.4:9610520-9610539 MS.gene31410:CDS 25.0%
AACAATGCTGTAACTATAAG+CGG + chr2.4:9610321-9610340 MS.gene31410:CDS 30.0%
ATAAGGATATTCTTTAGCAG+TGG - chr2.4:9610262-9610281 None:intergenic 30.0%
ATAGATTGCGATACTAAAAG+TGG + chr2.4:9610168-9610187 MS.gene31410:CDS 30.0%
ATTGGATTGTGAAGAATTCA+TGG + chr2.4:9610538-9610557 MS.gene31410:CDS 30.0%
GCATTGTTATACTCAATCTA+TGG + chr2.4:9609290-9609309 MS.gene31410:CDS 30.0%
GCTAAAGAATATCCTTATAC+AGG + chr2.4:9610264-9610283 MS.gene31410:CDS 30.0%
TAGATTGCGATACTAAAAGT+GGG + chr2.4:9610169-9610188 MS.gene31410:CDS 30.0%
TGAATTCTTTGTGTGCATTT+CGG - chr2.4:9609335-9609354 None:intergenic 30.0%
TTGGATTGTGAAGAATTCAT+GGG + chr2.4:9610539-9610558 MS.gene31410:CDS 30.0%
TTTGCAATAAACTACCACAA+TGG - chr2.4:9609687-9609706 None:intergenic 30.0%
! TTTCTCCAATCTATGCTTTT+CGG - chr2.4:9609631-9609650 None:intergenic 30.0%
!! ATTTATGTTTTGGGCTGATA+TGG + chr2.4:9610033-9610052 MS.gene31410:intron 30.0%
!!! TACAGCATTGTTTTTAGCTT+TGG - chr2.4:9610313-9610332 None:intergenic 30.0%
AACTACATCAAAAAACACGG+AGG + chr2.4:9610231-9610250 MS.gene31410:CDS 35.0%
ACATATCGTTTAGTTGTGCA+TGG - chr2.4:9609822-9609841 None:intergenic 35.0%
ACTACATCAAAAAACACGGA+GGG + chr2.4:9610232-9610251 MS.gene31410:CDS 35.0%
AGCATAGATTGGAGAAAGAA+TGG + chr2.4:9609634-9609653 MS.gene31410:CDS 35.0%
ATTACAGAGACAGAGAAGAA+TGG + chr2.4:9609413-9609432 MS.gene31410:CDS 35.0%
CGTGATACTAAGGATAAAGA+CGG + chr2.4:9610600-9610619 MS.gene31410:CDS 35.0%
GAATTCTTTGTGTGCATTTC+GGG - chr2.4:9609334-9609353 None:intergenic 35.0%
GTGATACTAAGGATAAAGAC+GGG + chr2.4:9610601-9610620 MS.gene31410:CDS 35.0%
GTTTGTGATATGAACATGAC+AGG + chr2.4:9609864-9609883 MS.gene31410:intron 35.0%
TATCCTTATACAGGAAGAGA+CGG + chr2.4:9610273-9610292 MS.gene31410:CDS 35.0%
TGTTAGGTAGTAATTCCTCA+AGG - chr2.4:9609935-9609954 None:intergenic 35.0%
TTACAGAGACAGAGAAGAAT+GGG + chr2.4:9609414-9609433 MS.gene31410:CDS 35.0%
! AACTACCGAAAAGCATAGAT+TGG + chr2.4:9609623-9609642 MS.gene31410:CDS 35.0%
! GAAAACAGTCTTTTACCTTG+AGG + chr2.4:9609917-9609936 MS.gene31410:intron 35.0%
! TGAAGAAGAGGTATGAAACA+TGG + chr2.4:9609371-9609390 MS.gene31410:CDS 35.0%
!! TATTCAAAAGGTGTCTTCTC+TGG + chr2.4:9610447-9610466 MS.gene31410:CDS 35.0%
AACCATGGCATGACTATAGT+TGG + chr2.4:9610489-9610508 MS.gene31410:CDS 40.0%
AACTTGATGCAGGAAGTTGT+TGG + chr2.4:9610064-9610083 MS.gene31410:intron 40.0%
AAGAGACGGTAAGTGTAACA+AGG + chr2.4:9610287-9610306 MS.gene31410:CDS 40.0%
AATTCATGGGCAAATGACTG+GGG + chr2.4:9610552-9610571 MS.gene31410:CDS 40.0%
ACCATGGCATGACTATAGTT+GGG + chr2.4:9610490-9610509 MS.gene31410:CDS 40.0%
ACTTGATGCAGGAAGTTGTT+GGG + chr2.4:9610065-9610084 MS.gene31410:intron 40.0%
AGAATTCATGGGCAAATGAC+TGG + chr2.4:9610550-9610569 MS.gene31410:CDS 40.0%
ATCCTGCAATCATGAAGAAG+AGG + chr2.4:9609359-9609378 MS.gene31410:CDS 40.0%
CAGGATGAAACGTGATACTA+AGG + chr2.4:9610590-9610609 MS.gene31410:CDS 40.0%
CTTACAAGCTCAAAGACAAC+AGG + chr2.4:9609503-9609522 MS.gene31410:CDS 40.0%
GAAACATGGCTGAAACGATA+CGG + chr2.4:9609385-9609404 MS.gene31410:CDS 40.0%
GAATTCATGGGCAAATGACT+GGG + chr2.4:9610551-9610570 MS.gene31410:CDS 40.0%
GATACTAAAAGTGGGAACGA+AGG + chr2.4:9610177-9610196 MS.gene31410:CDS 40.0%
GGCATCAACAAGATCAAAAC+AGG + chr2.4:9610114-9610133 MS.gene31410:CDS 40.0%
GTTACACACGTCAAAGATCA+AGG + chr2.4:9609661-9609680 MS.gene31410:CDS 40.0%
GTTGGGTATGGAGAAGAAAA+TGG + chr2.4:9610507-9610526 MS.gene31410:CDS 40.0%
TACCTCTTCTTCATGATTGC+AGG - chr2.4:9609364-9609383 None:intergenic 40.0%
TTACCGTCTCTTCCTGTATA+AGG - chr2.4:9610279-9610298 None:intergenic 40.0%
!! GAGTTCAAAAGCACCTATCT+AGG + chr2.4:9609547-9609566 MS.gene31410:CDS 40.0%
AAGGATAAAGACGGGACTTG+TGG + chr2.4:9610609-9610628 MS.gene31410:CDS 45.0%
AAGTTGTTGGGCATTCTCAG+CGG + chr2.4:9610077-9610096 MS.gene31410:CDS 45.0%
ACCCAACTATAGTCATGCCA+TGG - chr2.4:9610494-9610513 None:intergenic 45.0%
CTATAGTCATGCCATGGTTG+AGG - chr2.4:9610488-9610507 None:intergenic 45.0%
GGCATGACTATAGTTGGGTA+TGG + chr2.4:9610495-9610514 MS.gene31410:CDS 45.0%
GGTGATGTCAAACTTGATGC+AGG + chr2.4:9610054-9610073 MS.gene31410:intron 45.0%
GTCAAAGATCAAGGCCATTG+TGG + chr2.4:9609670-9609689 MS.gene31410:CDS 45.0%
! AGCATTTTCTCATTGCGAGC+AGG - chr2.4:9610360-9610379 None:intergenic 45.0%
! CCTATCTAGGTTTTCTGCCT+CGG + chr2.4:9609560-9609579 MS.gene31410:CDS 45.0%
! CTTCTCTGGAAGTTGTGGAA+AGG + chr2.4:9610461-9610480 MS.gene31410:CDS 45.0%
ACCTCCAGCATCAGTTGCAA+TGG - chr2.4:9610412-9610431 None:intergenic 50.0%
CCGAGGCAGAAAACCTAGAT+AGG - chr2.4:9609563-9609582 None:intergenic 50.0%
GACAGGGTATGTAGCATCCA+CGG - chr2.4:9610640-9610659 None:intergenic 50.0%
GCAAATGACTGGGGTGAATC+GGG + chr2.4:9610561-9610580 MS.gene31410:CDS 50.0%
GCATCAGTTGCAATGGAGAC+AGG - chr2.4:9610405-9610424 None:intergenic 50.0%
GGCAAATGACTGGGGTGAAT+CGG + chr2.4:9610560-9610579 MS.gene31410:CDS 50.0%
GGGGTGAATCGGGTTATATC+AGG + chr2.4:9610571-9610590 MS.gene31410:CDS 50.0%
GTCTCCATTGCAACTGATGC+TGG + chr2.4:9610405-9610424 MS.gene31410:CDS 50.0%
TCCATTGCAACTGATGCTGG+AGG + chr2.4:9610408-9610427 MS.gene31410:CDS 50.0%
TCTGTTTGTGCACGAAACCG+AGG - chr2.4:9609580-9609599 None:intergenic 50.0%
TGTGGAAAGGACCTCAACCA+TGG + chr2.4:9610474-9610493 MS.gene31410:CDS 50.0%
! GGTGTCTTCTCTGGAAGTTG+TGG + chr2.4:9610456-9610475 MS.gene31410:CDS 50.0%
AGTGGGAACGAAGGCTGCAA+AGG + chr2.4:9610186-9610205 MS.gene31410:CDS 55.0%
TTGTTGGGCATTCTCAGCGG+TGG + chr2.4:9610080-9610099 MS.gene31410:CDS 55.0%
GGGAACGAAGGCTGCAAAGG+TGG + chr2.4:9610189-9610208 MS.gene31410:CDS 60.0%
TCAGCGGTGGCAGCTGTAGA+AGG + chr2.4:9610093-9610112 MS.gene31410:CDS 60.0%
CGGGACTTGTGGCATTGCCG+TGG + chr2.4:9610620-9610639 MS.gene31410:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 9609268 9610668 9609268 ID=MS.gene31410
chr2.4 mRNA 9609268 9610668 9609268 ID=MS.gene31410.t1;Parent=MS.gene31410
chr2.4 exon 9609268 9609691 9609268 ID=MS.gene31410.t1.exon1;Parent=MS.gene31410.t1
chr2.4 CDS 9609268 9609691 9609268 ID=cds.MS.gene31410.t1;Parent=MS.gene31410.t1
chr2.4 exon 9610076 9610668 9610076 ID=MS.gene31410.t1.exon2;Parent=MS.gene31410.t1
chr2.4 CDS 9610076 9610668 9610076 ID=cds.MS.gene31410.t1;Parent=MS.gene31410.t1
Gene Sequence

>MS.gene31410

ATGAAGACAACTATAACATTAAGCATTGTTATACTCAATCTATGGATAACTGCAAGTGCATGTCCCGAAATGCACACAAAGAATTCAACTAATCCTGCAATCATGAAGAAGAGGTATGAAACATGGCTGAAACGATACGGACGACATTACAGAGACAGAGAAGAATGGGAAGTTCGTTTCGACATCTACCAATCAAATGTTCAGTATATAGAGTTCTACAACTCTCAAAACTATTCTTACAAGCTCAAAGACAACAGGTTTGCAGATCTTACTAATGAAGAGTTCAAAAGCACCTATCTAGGTTTTCTGCCTCGGTTTCGTGCACAAACAGAATTCAGTTATCATAAACATGGAGAACTACCGAAAAGCATAGATTGGAGAAAGAATGGTGCAGTTACACACGTCAAAGATCAAGGCCATTGTGGTAGTTTATTGCAAATCAAGTTTATTAATTTTTTTTTTTTTTTTGCCTCAAAAAAAGTTTATTCATTTTCTCAGATATTACAGTTTAGCTACTAGTATGCTATGATATATACACAAATCTAGTAGTTCCATGCACAACTAAACGATATGTCTATACGAACTTTATCTGAAGTGTTTGTGATATGAACATGACAGGATAAATTAGTCTTATAGTTATATCTATAAAGAAAACAGTCTTTTACCTTGAGGAATTACTACCTAACAAGTAAATGTATTTGAAGTATTCTGAAGTTTATCTATTGCTAAGTAGCGAGCTAAAGAGCATGCTTAAACATTTTTGAAATTTATGTTTTGGGCTGATATGGTGATGTCAAACTTGATGCAGGAAGTTGTTGGGCATTCTCAGCGGTGGCAGCTGTAGAAGGCATCAACAAGATCAAAACAGGAAATTTAGTTTCTCTATCAGAACAACAGTTGATAGATTGCGATACTAAAAGTGGGAACGAAGGCTGCAAAGGTGGCGACATGTACATAGCATTCAACTACATCAAAAAACACGGAGGGTTAGCCACTGCTAAAGAATATCCTTATACAGGAAGAGACGGTAAGTGTAACAAGGCCAAAGCTAAAAACAATGCTGTAACTATAAGCGGCTACGAAAGTGTACCTGCTCGCAATGAGAAAATGCTAAAAGCTGCAGTTGCTCATCAGCCTGTCTCCATTGCAACTGATGCTGGAGGTTATGCATTTCAATTTTATTCAAAAGGTGTCTTCTCTGGAAGTTGTGGAAAGGACCTCAACCATGGCATGACTATAGTTGGGTATGGAGAAGAAAATGGTGAAAAGTATTGGATTGTGAAGAATTCATGGGCAAATGACTGGGGTGAATCGGGTTATATCAGGATGAAACGTGATACTAAGGATAAAGACGGGACTTGTGGCATTGCCGTGGATGCTACATACCCTGTCAAGCATTAA
Protein sequence

>MS.gene31410.t1

MKTTITLSIVILNLWITASACPEMHTKNSTNPAIMKKRYETWLKRYGRHYRDREEWEVRFDIYQSNVQYIEFYNSQNYSYKLKDNRFADLTNEEFKSTYLGFLPRFRAQTEFSYHKHGELPKSIDWRKNGAVTHVKDQGHCGSCWAFSAVAAVEGINKIKTGNLVSLSEQQLIDCDTKSGNEGCKGGDMYIAFNYIKKHGGLATAKEYPYTGRDGKCNKAKAKNNAVTISGYESVPARNEKMLKAAVAHQPVSIATDAGGYAFQFYSKGVFSGSCGKDLNHGMTIVGYGEENGEKYWIVKNSWANDWGESGYIRMKRDTKDKDGTCGIAVDATYPVKH