AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene48296

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48296.t1 MTR_4g104370 97.500 360 9 0 1 360 1 360 0.0 741
MS.gene48296.t1 MTR_3g075390 74.309 362 91 2 1 360 1 362 0.0 578
MS.gene48296.t1 MTR_4g079770 55.172 348 145 9 1 342 1 343 3.69e-128 371
MS.gene48296.t1 MTR_4g107930 54.467 347 149 7 1 342 1 343 1.74e-127 369
MS.gene48296.t1 MTR_4g079470 58.176 318 123 8 30 342 31 343 2.63e-126 367
MS.gene48296.t1 MTR_5g022560 54.335 346 141 9 5 342 6 342 3.72e-126 366
MS.gene48296.t1 MTR_4g047610 59.425 313 115 8 38 342 33 341 5.68e-126 365
MS.gene48296.t1 MTR_4g079800 57.862 318 124 8 30 342 31 343 9.83e-126 365
MS.gene48296.t1 MTR_3g116080 53.448 348 150 7 5 345 7 349 9.21e-123 358
MS.gene48296.t1 MTR_4g080730 56.467 317 126 8 30 342 30 338 2.80e-122 356
MS.gene48296.t1 MTR_4g080700 57.372 312 121 8 35 342 35 338 2.96e-122 356
MS.gene48296.t1 MTR_2g075830 54.360 344 141 9 5 342 6 339 5.84e-119 348
MS.gene48296.t1 MTR_1g107550 54.434 327 143 6 23 345 33 357 5.16e-118 350
MS.gene48296.t1 MTR_1g018840 50.704 355 162 8 1 344 10 362 8.79e-117 346
MS.gene48296.t1 MTR_1g018840 50.704 355 162 8 1 344 10 362 1.83e-116 346
MS.gene48296.t1 MTR_4g079440 55.375 307 126 6 40 343 46 344 6.83e-116 340
MS.gene48296.t1 MTR_4g094918 49.713 348 162 7 1 344 4 342 9.54e-116 340
MS.gene48296.t1 MTR_3g102220 50.716 349 161 8 6 345 17 363 1.96e-113 338
MS.gene48296.t1 MTR_4g080360 49.682 314 153 4 33 343 30 341 3.02e-108 320
MS.gene48296.t1 MTR_2g090890 51.948 308 136 6 40 344 39 337 3.03e-107 318
MS.gene48296.t1 MTR_2g083930 48.378 339 161 7 11 343 13 343 2.56e-106 315
MS.gene48296.t1 MTR_7g078600 49.845 323 142 10 26 343 30 337 4.51e-101 302
MS.gene48296.t1 MTR_3g112430 48.875 311 155 4 39 346 35 344 1.08e-95 292
MS.gene48296.t1 MTR_7g079230 47.006 334 160 8 13 342 14 334 2.18e-94 285
MS.gene48296.t1 MTR_2g015850 46.465 297 154 4 48 343 71 363 4.01e-85 262
MS.gene48296.t1 MTR_2g016180 43.143 350 179 12 8 345 16 357 2.35e-84 264
MS.gene48296.t1 MTR_2g016270 42.571 350 166 12 8 345 16 342 1.33e-83 262
MS.gene48296.t1 MTR_4g065077 40.223 358 181 15 6 344 14 357 1.89e-69 222
MS.gene48296.t1 MTR_2g067900 41.018 334 176 12 22 343 2 326 6.31e-68 217
MS.gene48296.t1 MTR_2g015920 37.353 340 187 13 30 355 43 370 9.04e-66 213
MS.gene48296.t1 MTR_4g125300 42.574 303 145 13 52 343 64 348 1.81e-64 209
MS.gene48296.t1 MTR_8g086470 39.377 353 175 14 6 344 30 357 4.04e-64 208
MS.gene48296.t1 MTR_2g067560 42.633 319 151 15 40 337 16 323 5.93e-64 219
MS.gene48296.t1 MTR_2g015930 37.879 330 178 14 30 344 42 359 3.84e-60 197
MS.gene48296.t1 MTR_1g023210 38.742 302 150 12 54 335 66 352 8.99e-59 194
MS.gene48296.t1 MTR_2g064475 35.965 342 170 13 40 341 16 348 3.76e-56 187
MS.gene48296.t1 MTR_1g023810 41.593 226 123 6 120 341 41 261 1.29e-55 183
MS.gene48296.t1 MTR_4g071060 37.049 305 160 10 49 335 58 348 5.83e-55 184
MS.gene48296.t1 MTR_2g066980 36.025 322 149 12 40 342 34 317 7.64e-55 183
MS.gene48296.t1 MTR_1g094135 33.728 338 194 10 15 335 34 358 6.13e-54 182
MS.gene48296.t1 MTR_7g078630 38.411 302 137 10 19 306 687 953 8.93e-53 187
MS.gene48296.t1 MTR_7g078580 63.636 99 35 1 245 343 4 101 6.00e-41 140
MS.gene48296.t1 MTR_4g072790 36.644 292 143 13 49 335 58 312 8.02e-40 144
MS.gene48296.t1 MTR_7g079130 65.934 91 31 0 253 343 7 97 3.32e-38 132
MS.gene48296.t1 MTR_4g072340 34.576 295 149 12 49 335 58 316 2.14e-37 137
MS.gene48296.t1 MTR_4g073660 34.576 295 149 12 49 335 57 315 2.89e-37 137
MS.gene48296.t1 MTR_1g025450 40.000 180 83 7 124 298 51 210 7.35e-34 131
MS.gene48296.t1 MTR_2g015840 50.450 111 54 1 232 342 161 270 1.87e-32 122
MS.gene48296.t1 MTR_2g015840 35.256 156 94 5 11 163 5 156 3.24e-20 89.4
MS.gene48296.t1 MTR_2g016380 43.902 123 62 4 227 345 18 137 4.05e-27 107
MS.gene48296.t1 MTR_2g047960 65.385 78 26 1 138 214 8 85 6.29e-26 100
MS.gene48296.t1 MTR_3g029560 32.075 212 114 6 139 343 49 237 2.11e-23 97.4
MS.gene48296.t1 MTR_7g111060 26.906 223 137 7 134 335 113 330 1.69e-21 94.7
MS.gene48296.t1 MTR_7g111050 27.572 243 148 8 126 345 102 339 3.17e-21 94.0
MS.gene48296.t1 MTR_7g079260 56.944 72 15 1 269 340 7 62 1.77e-20 85.9
MS.gene48296.t1 MTR_7g078310 36.571 175 91 7 48 216 84 244 6.52e-19 85.9
MS.gene48296.t1 MTR_7g111050 26.238 202 127 6 126 306 97 297 3.04e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene48296.t1 AT5G50260 69.252 361 108 2 3 360 1 361 0.0 535
MS.gene48296.t1 AT3G48340 65.470 362 120 4 3 360 1 361 6.06e-173 485
MS.gene48296.t1 AT3G48350 62.500 360 133 2 3 360 1 360 6.08e-168 473
MS.gene48296.t1 AT3G48350 61.733 277 104 2 3 277 1 277 2.26e-122 355
MS.gene48296.t1 AT1G20850 53.106 322 146 4 25 344 36 354 1.90e-118 347
MS.gene48296.t1 AT5G45890 49.292 353 152 9 3 342 6 344 1.85e-116 342
MS.gene48296.t1 AT4G35350 50.000 344 163 5 6 344 14 353 2.59e-116 342
MS.gene48296.t1 AT3G19390 50.000 354 162 8 1 349 8 351 1.32e-114 340
MS.gene48296.t1 AT5G43060 51.657 362 151 9 1 345 1 355 2.75e-114 340
MS.gene48296.t1 AT1G47128 52.681 317 141 4 32 344 42 353 4.41e-111 332
MS.gene48296.t1 AT1G06260 48.387 341 166 6 7 344 10 343 1.80e-110 326
MS.gene48296.t1 AT4G36880 49.547 331 155 7 32 352 41 369 4.41e-109 324
MS.gene48296.t1 AT3G19400 47.246 345 159 10 18 356 26 353 4.58e-101 303
MS.gene48296.t1 AT2G27420 49.688 320 152 6 33 343 28 347 9.15e-101 301
MS.gene48296.t1 AT4G11310 45.251 358 174 11 4 346 5 355 3.09e-99 298
MS.gene48296.t1 AT3G49340 47.785 316 157 6 33 343 28 340 4.90e-99 297
MS.gene48296.t1 AT4G11320 48.882 313 150 8 39 346 55 362 8.24e-99 297
MS.gene48296.t1 AT4G11320 48.882 313 150 8 39 346 55 362 8.24e-99 297
MS.gene48296.t1 AT2G34080 44.571 350 172 7 6 343 5 344 1.94e-97 293
MS.gene48296.t1 AT4G23520 46.203 316 159 8 39 349 46 355 5.05e-96 290
MS.gene48296.t1 AT1G09850 48.387 310 152 6 38 344 30 334 2.88e-93 285
MS.gene48296.t1 AT1G29090 43.966 348 187 6 2 343 9 354 3.57e-92 280
MS.gene48296.t1 AT1G29080 43.925 321 169 7 30 343 29 345 1.10e-87 268
MS.gene48296.t1 AT4G35350 47.842 278 134 5 7 277 13 286 3.58e-83 254
MS.gene48296.t1 AT3G43960 41.860 344 180 12 13 347 18 350 6.70e-78 244
MS.gene48296.t1 AT1G29110 38.551 345 186 10 7 343 7 333 8.27e-74 232
MS.gene48296.t1 AT3G19400 45.977 261 127 8 18 272 26 278 8.89e-68 215
MS.gene48296.t1 AT5G60360 41.333 300 155 11 51 343 71 356 7.44e-64 207
MS.gene48296.t1 AT3G45310 41.333 300 155 11 51 343 71 356 1.08e-62 204
MS.gene48296.t1 AT5G60360 41.000 300 155 12 51 343 71 355 3.19e-61 200
MS.gene48296.t1 AT3G45310 41.000 300 155 12 51 343 71 355 4.20e-60 197
MS.gene48296.t1 AT5G60360 40.550 291 152 11 51 334 71 347 5.62e-59 195
MS.gene48296.t1 AT4G39090 38.511 309 161 9 44 335 56 352 3.41e-58 193
MS.gene48296.t1 AT2G21430 35.328 351 192 12 6 335 13 349 2.07e-57 191
MS.gene48296.t1 AT4G16190 36.364 297 164 8 55 335 71 358 6.09e-52 177
MS.gene48296.t1 AT3G54940 35.333 300 165 10 54 335 66 354 8.11e-50 171
MS.gene48296.t1 AT3G54940 35.185 216 125 6 54 259 66 276 5.54e-35 129
MS.gene48296.t1 AT1G02305 27.778 306 175 13 85 360 68 357 4.61e-25 104
MS.gene48296.t1 AT4G01610 25.887 282 168 11 85 338 65 333 2.85e-21 94.0
MS.gene48296.t1 AT2G22160 50.000 96 36 2 60 151 15 102 3.35e-21 87.8
MS.gene48296.t1 AT1G02300 28.692 237 138 8 147 360 146 374 2.03e-20 91.7
MS.gene48296.t1 AT4G01610 25.177 282 170 11 85 338 65 333 2.42e-19 88.6

Find 87 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGGCTTATCTAATTTAT+TGG 0.217778 8.3:-18085067 None:intergenic
TTATTCAACTTAAGCTTATA+AGG 0.250519 8.3:-18085084 None:intergenic
AGCTAAGAGCTTTGATTTCC+AGG 0.263284 8.3:+18084906 MS.gene48296:CDS
AGGATGCAACGGTGGGTTAA+TGG 0.279883 8.3:+18085682 MS.gene48296:CDS
TAACTTGTATAGGTAGTTGC+TGG 0.293976 8.3:+18085552 MS.gene48296:intron
CTCAAGATGGAACAAAATAT+TGG 0.333579 8.3:+18086224 MS.gene48296:CDS
AAGCATCTATGCTGATTCTA+AGG 0.335794 8.3:+18085137 MS.gene48296:CDS
GGGAAGTGAATGGGGAGAAC+AGG 0.351413 8.3:+18086264 MS.gene48296:CDS
TAATTACAGGGAGTATTTAC+TGG 0.363002 8.3:+18086148 MS.gene48296:intron
TCGATTGATTGGAGGAAGAT+AGG 0.372632 8.3:+18085240 MS.gene48296:CDS
ATCATTTATAGCTCATCTTT+CGG 0.372684 8.3:-18086400 None:intergenic
TTCGAGTTCATCAAGCAAAA+TGG 0.391365 8.3:+18085713 MS.gene48296:CDS
TCAACAATTGTAGCTGTTGA+AGG 0.396428 8.3:+18085581 MS.gene48296:CDS
ATGTTCCTTCTTCGATTGAT+TGG 0.402034 8.3:+18085229 MS.gene48296:CDS
TAGACCTTGCTTGTGAGATA+TGG 0.415919 8.3:-18086308 None:intergenic
ATTGGACAGTGAAGAACTCT+TGG 0.427329 8.3:+18086242 MS.gene48296:CDS
AAACCAGCAGTGTCAATTGA+TGG 0.433654 8.3:+18085920 MS.gene48296:CDS
GAACTCTTGGGGAAGTGAAT+GGG 0.438030 8.3:+18086255 MS.gene48296:CDS
TATCTAATTTATTGGTATTG+TGG 0.443235 8.3:-18085059 None:intergenic
GCATCAATAGCTACAGAAAT+CGG 0.448717 8.3:-18086001 None:intergenic
AATGCTGCTTCATTGTTAGC+AGG 0.455028 8.3:-18085956 None:intergenic
GGGGTAGCAATTGTGGGGTA+TGG 0.459702 8.3:+18086196 MS.gene48296:CDS
TAAAATCAAAGCTAGGGATA+AGG 0.466804 8.3:-18084878 None:intergenic
AGGTGCTGTCACCGGGGTAA+AGG 0.468205 8.3:+18085260 MS.gene48296:CDS
GGAAGATAGGTGCTGTCACC+GGG 0.470663 8.3:+18085253 MS.gene48296:CDS
ATTTCTGTAGCTATTGATGC+CGG 0.473128 8.3:+18086004 MS.gene48296:CDS
TGGCCATCAATTGACACTGC+TGG 0.473744 8.3:-18085923 None:intergenic
AGCATCAGAGAAAAGTTTGT+GGG 0.476908 8.3:+18084939 MS.gene48296:CDS
GAATCATGGGGTAGCAATTG+TGG 0.479525 8.3:+18086189 MS.gene48296:CDS
TTGGACAGTGAAGAACTCTT+GGG 0.479993 8.3:+18086243 MS.gene48296:CDS
AATCATGGGGTAGCAATTGT+GGG 0.482862 8.3:+18086190 MS.gene48296:CDS
TTTCTGTAGCTATTGATGCC+GGG 0.483109 8.3:+18086005 MS.gene48296:CDS
AGAACTCTTGGGGAAGTGAA+TGG 0.483270 8.3:+18086254 MS.gene48296:CDS
TTATCCTTATGCTGCAAAAG+AGG 0.485453 8.3:+18085754 MS.gene48296:CDS
TGTGGGATTTGTACGAGAGA+TGG 0.486184 8.3:+18084956 MS.gene48296:CDS
AACTTGTATAGGTAGTTGCT+GGG 0.493124 8.3:+18085553 MS.gene48296:intron
CTATTCCTAAAATCAAAGCT+AGG 0.494841 8.3:-18084885 None:intergenic
GGAAGTGAATGGGGAGAACA+GGG 0.501956 8.3:+18086265 MS.gene48296:CDS
GGGAACCTGTAATATACAAA+AGG 0.508036 8.3:+18085775 MS.gene48296:CDS
TTCCTTCTTCGATTGATTGG+AGG 0.508300 8.3:+18085232 MS.gene48296:CDS
TTCTGTAGCTATTGATGCCG+GGG 0.509636 8.3:+18086006 MS.gene48296:CDS
TATCCTTATGCTGCAAAAGA+GGG 0.511600 8.3:+18085755 MS.gene48296:CDS
AGCTACAGAAATCGGTTGGT+TGG 0.518524 8.3:-18085993 None:intergenic
AGGAAGATAGGTGCTGTCAC+CGG 0.527243 8.3:+18085252 MS.gene48296:CDS
AACAAGTAAGCTTACCGCAT+TGG 0.533561 8.3:-18085290 None:intergenic
TGTGGTACTGAGCTGAATCA+TGG 0.537115 8.3:+18086175 MS.gene48296:CDS
TTCCTCCAATCAATCGAAGA+AGG 0.537545 8.3:-18085234 None:intergenic
CACAAGTTCTTGCTCGGACA+AGG 0.537976 8.3:-18085636 None:intergenic
TATTCCTAAAATCAAAGCTA+GGG 0.538115 8.3:-18084884 None:intergenic
CTGATGCTAAGTCATTCTCC+TGG 0.541617 8.3:-18084924 None:intergenic
GTGGTACTGAGCTGAATCAT+GGG 0.550981 8.3:+18086176 MS.gene48296:CDS
TGCGACACTAAAGTGAATCA+AGG 0.551630 8.3:+18085662 MS.gene48296:CDS
GGGTATGGAGCAACTCAAGA+TGG 0.553677 8.3:+18086211 MS.gene48296:CDS
GGGTTACATTAGAATGCAAA+GGG 0.553947 8.3:+18086285 MS.gene48296:CDS
AGGTCTATGTGGCATAGCGA+TGG 0.556383 8.3:+18086324 MS.gene48296:CDS
GTCACCGGGGTAAAGGATCA+AGG 0.557892 8.3:+18085267 MS.gene48296:CDS
AACTCTTGGGGAAGTGAATG+GGG 0.569712 8.3:+18086256 MS.gene48296:CDS
GCAATCCACAAGTTCTTGCT+CGG 0.579328 8.3:-18085642 None:intergenic
ATGCTGCTTCATTGTTAGCA+GGG 0.581774 8.3:-18085955 None:intergenic
TGTTAGCAGGGACATTCTCA+TGG 0.582058 8.3:-18085943 None:intergenic
TAGCATCAGAGAAAAGTTTG+TGG 0.583867 8.3:+18084938 MS.gene48296:CDS
AAACTGGAAATCAGATCCCC+CGG 0.593442 8.3:-18086023 None:intergenic
CATTGTCATGTGACATGCCA+CGG 0.595325 8.3:-18085179 None:intergenic
TCTATGTGGCATAGCGATGG+AGG 0.598279 8.3:+18086327 MS.gene48296:CDS
GTGAATCAAGGATGCAACGG+TGG 0.599603 8.3:+18085674 MS.gene48296:CDS
AGGGTTACATTAGAATGCAA+AGG 0.601301 8.3:+18086284 MS.gene48296:CDS
CAATAGCTACAGAAATCGGT+TGG 0.603005 8.3:-18085997 None:intergenic
CGTGGCATGTCACATGACAA+TGG 0.606637 8.3:+18085180 MS.gene48296:CDS
CTTGTCCGAGCAAGAACTTG+TGG 0.608838 8.3:+18085637 MS.gene48296:CDS
TCTCACAAGCAAGGTCTATG+TGG 0.620594 8.3:+18086313 MS.gene48296:CDS
TGAATCAAGGATGCAACGGT+GGG 0.628142 8.3:+18085675 MS.gene48296:CDS
TCTGTAGCTATTGATGCCGG+GGG 0.632927 8.3:+18086007 MS.gene48296:CDS
TTGGCCTTGATCCTTTACCC+CGG 0.635267 8.3:-18085271 None:intergenic
TCCACATTCTCATACATGAA+CGG 0.636776 8.3:-18085204 None:intergenic
ACCGTTCATGTATGAGAATG+TGG 0.645392 8.3:+18085203 MS.gene48296:CDS
AAAGTGAATCAAGGATGCAA+CGG 0.646923 8.3:+18085671 MS.gene48296:CDS
AGGGCCATATCTCACAAGCA+AGG 0.656245 8.3:+18086304 MS.gene48296:CDS
TGGACAGTGAAGAACTCTTG+GGG 0.663115 8.3:+18086244 MS.gene48296:CDS
ATTGTGGACATGCATAACAT+TGG 0.668124 8.3:-18085043 None:intergenic
AATCATCATAGAATGTTCCG+TGG 0.676558 8.3:+18085162 MS.gene48296:CDS
ATCATGGGGTAGCAATTGTG+GGG 0.693047 8.3:+18086191 MS.gene48296:CDS
CAAGACTTCGAGTAACTGTG+TGG 0.728098 8.3:-18084987 None:intergenic
GGAGTATTTACTGGACACTG+TGG 0.740210 8.3:+18086157 MS.gene48296:CDS
TGGTACTGAGCTGAATCATG+GGG 0.741700 8.3:+18086177 MS.gene48296:CDS
GAAGATAGGTGCTGTCACCG+GGG 0.757764 8.3:+18085254 MS.gene48296:CDS
GTTCATGTATGAGAATGTGG+AGG 0.769545 8.3:+18085206 MS.gene48296:CDS
GTAAAGGATCAAGGCCAATG+CGG 0.813840 8.3:+18085276 MS.gene48296:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATTAATTATATATT+AGG - chr8.3:18085833-18085852 None:intergenic 0.0%
!! AATTACAAAAATATAATTAC+AGG + chr8.3:18086135-18086154 MS.gene48296:intron 10.0%
!! ATTACAAAAATATAATTACA+GGG + chr8.3:18086136-18086155 MS.gene48296:intron 10.0%
!!! AATTTTATTTGATTAACTTA+TGG + chr8.3:18085848-18085867 MS.gene48296:intron 10.0%
!!! ATATTTTTGTAATTAAAAGT+GGG - chr8.3:18086129-18086148 None:intergenic 10.0%
!!! ATTTTATTTGATTAACTTAT+GGG + chr8.3:18085849-18085868 MS.gene48296:intron 10.0%
!!! TATATTTTTGTAATTAAAAG+TGG - chr8.3:18086130-18086149 None:intergenic 10.0%
!! ATAAGGCTTATCTAATTTAT+TGG - chr8.3:18085070-18085089 None:intergenic 20.0%
!! TATCTAATTTATTGGTATTG+TGG - chr8.3:18085062-18085081 None:intergenic 20.0%
!! TTATTCAACTTAAGCTTATA+AGG - chr8.3:18085087-18085106 None:intergenic 20.0%
! ATAATCAAATACAGACTAAG+TGG - chr8.3:18085429-18085448 None:intergenic 25.0%
! CAAGTGAAAATGTGTTAATT+TGG - chr8.3:18085888-18085907 None:intergenic 25.0%
! TATTCCTAAAATCAAAGCTA+GGG - chr8.3:18084887-18084906 None:intergenic 25.0%
! TCTGTATTTGATTATACGTT+TGG + chr8.3:18085434-18085453 MS.gene48296:intron 25.0%
!! TTTTCAGATGACTTTTTGAT+TGG - chr8.3:18086361-18086380 None:intergenic 25.0%
!!! GAATTGTTTCTAACTTGTAT+AGG + chr8.3:18085542-18085561 MS.gene48296:intron 25.0%
CTATTCCTAAAATCAAAGCT+AGG - chr8.3:18084888-18084907 None:intergenic 30.0%
CTCAAGATGGAACAAAATAT+TGG + chr8.3:18086224-18086243 MS.gene48296:CDS 30.0%
TAAAATCAAAGCTAGGGATA+AGG - chr8.3:18084881-18084900 None:intergenic 30.0%
TGTAATTAAAAGTGGGATCA+AGG - chr8.3:18086122-18086141 None:intergenic 30.0%
TTCAAGCGATTTAACTAACA+TGG - chr8.3:18085383-18085402 None:intergenic 30.0%
! AACACATTTTCACTTGATGT+AGG + chr8.3:18085892-18085911 MS.gene48296:intron 30.0%
! GTTTTACCTCTGAATAAAAC+TGG - chr8.3:18086042-18086061 None:intergenic 30.0%
!! GTTCTGAAGTAGAATTGATT+TGG + chr8.3:18085513-18085532 MS.gene48296:intron 30.0%
!! TAATTACAGGGAGTATTTAC+TGG + chr8.3:18086148-18086167 MS.gene48296:intron 30.0%
!!! TGATTTCCAGTTTTATTCAG+AGG + chr8.3:18086033-18086052 MS.gene48296:CDS 30.0%
!!! TTATCCCTAGCTTTGATTTT+AGG + chr8.3:18084880-18084899 MS.gene48296:CDS 30.0%
AAAGTGAATCAAGGATGCAA+CGG + chr8.3:18085671-18085690 MS.gene48296:CDS 35.0%
AACTTGTATAGGTAGTTGCT+GGG + chr8.3:18085553-18085572 MS.gene48296:intron 35.0%
AATCATCATAGAATGTTCCG+TGG + chr8.3:18085162-18085181 MS.gene48296:CDS 35.0%
AGCATCAGAGAAAAGTTTGT+GGG + chr8.3:18084939-18084958 MS.gene48296:CDS 35.0%
AGGGTTACATTAGAATGCAA+AGG + chr8.3:18086284-18086303 MS.gene48296:CDS 35.0%
ATGTTCCTTCTTCGATTGAT+TGG + chr8.3:18085229-18085248 MS.gene48296:CDS 35.0%
ATTGTGGACATGCATAACAT+TGG - chr8.3:18085046-18085065 None:intergenic 35.0%
ATTTCTGTAGCTATTGATGC+CGG + chr8.3:18086004-18086023 MS.gene48296:CDS 35.0%
GCATCAATAGCTACAGAAAT+CGG - chr8.3:18086004-18086023 None:intergenic 35.0%
GGGAACCTGTAATATACAAA+AGG + chr8.3:18085775-18085794 MS.gene48296:CDS 35.0%
GGGTTACATTAGAATGCAAA+GGG + chr8.3:18086285-18086304 MS.gene48296:CDS 35.0%
GTTTGGATCCAAAATTGATC+TGG + chr8.3:18085451-18085470 MS.gene48296:intron 35.0%
TAGCATCAGAGAAAAGTTTG+TGG + chr8.3:18084938-18084957 MS.gene48296:CDS 35.0%
TATCCTTATGCTGCAAAAGA+GGG + chr8.3:18085755-18085774 MS.gene48296:CDS 35.0%
TCAACAATTGTAGCTGTTGA+AGG + chr8.3:18085581-18085600 MS.gene48296:CDS 35.0%
TCCACATTCTCATACATGAA+CGG - chr8.3:18085207-18085226 None:intergenic 35.0%
TTATCCTTATGCTGCAAAAG+AGG + chr8.3:18085754-18085773 MS.gene48296:CDS 35.0%
! GTGCACCTTTTGTATATTAC+AGG - chr8.3:18085783-18085802 None:intergenic 35.0%
! TAACTTGTATAGGTAGTTGC+TGG + chr8.3:18085552-18085571 MS.gene48296:intron 35.0%
! TCGGAAGTGAACTTTTTGTT+GGG - chr8.3:18086384-18086403 None:intergenic 35.0%
! TTCGAGTTCATCAAGCAAAA+TGG + chr8.3:18085713-18085732 MS.gene48296:CDS 35.0%
! TTCGGAAGTGAACTTTTTGT+TGG - chr8.3:18086385-18086404 None:intergenic 35.0%
!! AAGCATCTATGCTGATTCTA+AGG + chr8.3:18085137-18085156 MS.gene48296:CDS 35.0%
!! CTAGTTTTCGTGTCTTGATT+TGG - chr8.3:18085613-18085632 None:intergenic 35.0%
AAACCAGCAGTGTCAATTGA+TGG + chr8.3:18085920-18085939 MS.gene48296:CDS 40.0%
AACAAGTAAGCTTACCGCAT+TGG - chr8.3:18085293-18085312 None:intergenic 40.0%
AATCATGGGGTAGCAATTGT+GGG + chr8.3:18086190-18086209 MS.gene48296:CDS 40.0%
ACCGTTCATGTATGAGAATG+TGG + chr8.3:18085203-18085222 MS.gene48296:CDS 40.0%
ATTGGACAGTGAAGAACTCT+TGG + chr8.3:18086242-18086261 MS.gene48296:CDS 40.0%
CAATAGCTACAGAAATCGGT+TGG - chr8.3:18086000-18086019 None:intergenic 40.0%
CCAAAATTGATCTGGAGAAC+TGG + chr8.3:18085459-18085478 MS.gene48296:intron 40.0%
GTTCATGTATGAGAATGTGG+AGG + chr8.3:18085206-18085225 MS.gene48296:CDS 40.0%
TAGACCTTGCTTGTGAGATA+TGG - chr8.3:18086311-18086330 None:intergenic 40.0%
TCGATTGATTGGAGGAAGAT+AGG + chr8.3:18085240-18085259 MS.gene48296:CDS 40.0%
TGCGACACTAAAGTGAATCA+AGG + chr8.3:18085662-18085681 MS.gene48296:CDS 40.0%
TTCCTCCAATCAATCGAAGA+AGG - chr8.3:18085237-18085256 None:intergenic 40.0%
TTCCTTCTTCGATTGATTGG+AGG + chr8.3:18085232-18085251 MS.gene48296:CDS 40.0%
TTGGACAGTGAAGAACTCTT+GGG + chr8.3:18086243-18086262 MS.gene48296:CDS 40.0%
TTTCTGTAGCTATTGATGCC+GGG + chr8.3:18086005-18086024 MS.gene48296:CDS 40.0%
! AATGCTGCTTCATTGTTAGC+AGG - chr8.3:18085959-18085978 None:intergenic 40.0%
! AGCTAAGAGCTTTGATTTCC+AGG + chr8.3:18084906-18084925 MS.gene48296:CDS 40.0%
! ATGCTGCTTCATTGTTAGCA+GGG - chr8.3:18085958-18085977 None:intergenic 40.0%
! CCAGTTCTCCAGATCAATTT+TGG - chr8.3:18085462-18085481 None:intergenic 40.0%
AAACTGGAAATCAGATCCCC+CGG - chr8.3:18086026-18086045 None:intergenic 45.0%
AACTCTTGGGGAAGTGAATG+GGG + chr8.3:18086256-18086275 MS.gene48296:CDS 45.0%
AGAACTCTTGGGGAAGTGAA+TGG + chr8.3:18086254-18086273 MS.gene48296:CDS 45.0%
AGCTACAGAAATCGGTTGGT+TGG - chr8.3:18085996-18086015 None:intergenic 45.0%
ATCATGGGGTAGCAATTGTG+GGG + chr8.3:18086191-18086210 MS.gene48296:CDS 45.0%
CAAGACTTCGAGTAACTGTG+TGG - chr8.3:18084990-18085009 None:intergenic 45.0%
CATTGTCATGTGACATGCCA+CGG - chr8.3:18085182-18085201 None:intergenic 45.0%
CTGATGCTAAGTCATTCTCC+TGG - chr8.3:18084927-18084946 None:intergenic 45.0%
GAACTCTTGGGGAAGTGAAT+GGG + chr8.3:18086255-18086274 MS.gene48296:CDS 45.0%
GAATCATGGGGTAGCAATTG+TGG + chr8.3:18086189-18086208 MS.gene48296:CDS 45.0%
GCAATCCACAAGTTCTTGCT+CGG - chr8.3:18085645-18085664 None:intergenic 45.0%
GTAAAGGATCAAGGCCAATG+CGG + chr8.3:18085276-18085295 MS.gene48296:CDS 45.0%
TCTCACAAGCAAGGTCTATG+TGG + chr8.3:18086313-18086332 MS.gene48296:CDS 45.0%
TGAATCAAGGATGCAACGGT+GGG + chr8.3:18085675-18085694 MS.gene48296:CDS 45.0%
TGGACAGTGAAGAACTCTTG+GGG + chr8.3:18086244-18086263 MS.gene48296:CDS 45.0%
TGTGGGATTTGTACGAGAGA+TGG + chr8.3:18084956-18084975 MS.gene48296:CDS 45.0%
TGTTAGCAGGGACATTCTCA+TGG - chr8.3:18085946-18085965 None:intergenic 45.0%
TTCTGTAGCTATTGATGCCG+GGG + chr8.3:18086006-18086025 MS.gene48296:CDS 45.0%
! GGAGTATTTACTGGACACTG+TGG + chr8.3:18086157-18086176 MS.gene48296:CDS 45.0%
! GTGGTACTGAGCTGAATCAT+GGG + chr8.3:18086176-18086195 MS.gene48296:CDS 45.0%
! GTTCCCTCTTTTGCAGCATA+AGG - chr8.3:18085761-18085780 None:intergenic 45.0%
! TGGTACTGAGCTGAATCATG+GGG + chr8.3:18086177-18086196 MS.gene48296:CDS 45.0%
! TGTGGTACTGAGCTGAATCA+TGG + chr8.3:18086175-18086194 MS.gene48296:CDS 45.0%
AGGGCCATATCTCACAAGCA+AGG + chr8.3:18086304-18086323 MS.gene48296:CDS 50.0%
AGGTCTATGTGGCATAGCGA+TGG + chr8.3:18086324-18086343 MS.gene48296:CDS 50.0%
CACAAGTTCTTGCTCGGACA+AGG - chr8.3:18085639-18085658 None:intergenic 50.0%
CGTGGCATGTCACATGACAA+TGG + chr8.3:18085180-18085199 MS.gene48296:CDS 50.0%
CTTGTCCGAGCAAGAACTTG+TGG + chr8.3:18085637-18085656 MS.gene48296:CDS 50.0%
GGAAGTGAATGGGGAGAACA+GGG + chr8.3:18086265-18086284 MS.gene48296:CDS 50.0%
GGGTATGGAGCAACTCAAGA+TGG + chr8.3:18086211-18086230 MS.gene48296:CDS 50.0%
GTGAATCAAGGATGCAACGG+TGG + chr8.3:18085674-18085693 MS.gene48296:CDS 50.0%
TCTATGTGGCATAGCGATGG+AGG + chr8.3:18086327-18086346 MS.gene48296:CDS 50.0%
TCTGTAGCTATTGATGCCGG+GGG + chr8.3:18086007-18086026 MS.gene48296:CDS 50.0%
TGGCCATCAATTGACACTGC+TGG - chr8.3:18085926-18085945 None:intergenic 50.0%
! AGGAAGATAGGTGCTGTCAC+CGG + chr8.3:18085252-18085271 MS.gene48296:CDS 50.0%
!! AGGATGCAACGGTGGGTTAA+TGG + chr8.3:18085682-18085701 MS.gene48296:CDS 50.0%
!! TTGGCCTTGATCCTTTACCC+CGG - chr8.3:18085274-18085293 None:intergenic 50.0%
GGGAAGTGAATGGGGAGAAC+AGG + chr8.3:18086264-18086283 MS.gene48296:CDS 55.0%
GGGGTAGCAATTGTGGGGTA+TGG + chr8.3:18086196-18086215 MS.gene48296:CDS 55.0%
GTCACCGGGGTAAAGGATCA+AGG + chr8.3:18085267-18085286 MS.gene48296:CDS 55.0%
! GAAGATAGGTGCTGTCACCG+GGG + chr8.3:18085254-18085273 MS.gene48296:CDS 55.0%
! GGAAGATAGGTGCTGTCACC+GGG + chr8.3:18085253-18085272 MS.gene48296:CDS 55.0%
! AGGTGCTGTCACCGGGGTAA+AGG + chr8.3:18085260-18085279 MS.gene48296:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 18084850 18086417 18084850 ID=MS.gene48296
chr8.3 mRNA 18084850 18086417 18084850 ID=MS.gene48296.t1;Parent=MS.gene48296
chr8.3 exon 18084850 18085297 18084850 ID=MS.gene48296.t1.exon1;Parent=MS.gene48296.t1
chr8.3 CDS 18084850 18085297 18084850 ID=cds.MS.gene48296.t1;Parent=MS.gene48296.t1
chr8.3 exon 18085564 18085796 18085564 ID=MS.gene48296.t1.exon2;Parent=MS.gene48296.t1
chr8.3 CDS 18085564 18085796 18085564 ID=cds.MS.gene48296.t1;Parent=MS.gene48296.t1
chr8.3 exon 18085914 18086054 18085914 ID=MS.gene48296.t1.exon3;Parent=MS.gene48296.t1
chr8.3 CDS 18085914 18086054 18085914 ID=cds.MS.gene48296.t1;Parent=MS.gene48296.t1
chr8.3 exon 18086157 18086417 18086157 ID=MS.gene48296.t1.exon4;Parent=MS.gene48296.t1
chr8.3 CDS 18086157 18086417 18086157 ID=cds.MS.gene48296.t1;Parent=MS.gene48296.t1
Gene Sequence

>MS.gene48296

ATGGAAATGAAGAAGCTCTTGTTTGTTTCCTTATCCCTAGCTTTGATTTTAGGAATAGCTAAGAGCTTTGATTTCCAGGAGAATGACTTAGCATCAGAGAAAAGTTTGTGGGATTTGTACGAGAGATGGAGAAGTCACCACACAGTTACTCGAAGTCTTGATGAGAAGAATAATCGTTTTAATGTGTTCAAAGCCAATGTTATGCATGTCCACAATACCAATAAATTAGATAAGCCTTATAAGCTTAAGTTGAATAAGTTTGCTGACATGACAAATTATGAATTTAGAAGCATCTATGCTGATTCTAAGGTTAATCATCATAGAATGTTCCGTGGCATGTCACATGACAATGGACCGTTCATGTATGAGAATGTGGAGGATGTTCCTTCTTCGATTGATTGGAGGAAGATAGGTGCTGTCACCGGGGTAAAGGATCAAGGCCAATGCGGTAAGCTTACTTGTTGATTAAGTAATCACATACTATTTATAATTTGCGTAAAACATGTTTTTTGATATCTACAAAATACTCACCATGTTAGTTAAATCGCTTGAAGTTTGATAGTTAAGTTTGTTCTTCCACTTAGTCTGTATTTGATTATACGTTTGGATCCAAAATTGATCTGGAGAACTGGAGAAGTGAAATTGATTTTAACATGTTTGATTGTTCTGAAGTAGAATTGATTTGGTCTTTTGAATTGTTTCTAACTTGTATAGGTAGTTGCTGGGCTTTCTCAACAATTGTAGCTGTTGAAGGTATTAACCAAATCAAGACACGAAAACTAGTATCCTTGTCCGAGCAAGAACTTGTGGATTGCGACACTAAAGTGAATCAAGGATGCAACGGTGGGTTAATGGAAAATGCATTCGAGTTCATCAAGCAAAATGGCATAACAACAGAAACTAATTATCCTTATGCTGCAAAAGAGGGAACCTGTAATATACAAAAGGTGCACACACTAGTCTATTTATAATTAGTACTACCTAATATATAATTAATAAATTTTATTTGATTAACTTATGGGAAAATTTAAAGATCCAAATTAACACATTTTCACTTGATGTAGGAGAATAAACCAGCAGTGTCAATTGATGGCCATGAGAATGTCCCTGCTAACAATGAAGCAGCATTGTTGAAAGCTGCTGCCAACCAACCGATTTCTGTAGCTATTGATGCCGGGGGATCTGATTTCCAGTTTTATTCAGAGGTAAAACTTATATAAATTTTTATCACTTACACATTTATATATTTTTGTATAAATTTGTATATCACCTTGATCCCACTTTTAATTACAAAAATATAATTACAGGGAGTATTTACTGGACACTGTGGTACTGAGCTGAATCATGGGGTAGCAATTGTGGGGTATGGAGCAACTCAAGATGGAACAAAATATTGGACAGTGAAGAACTCTTGGGGAAGTGAATGGGGAGAACAGGGTTACATTAGAATGCAAAGGGCCATATCTCACAAGCAAGGTCTATGTGGCATAGCGATGGAGGCTTCTTATCCAATCAAAAAGTCATCTGAAAACCCAACAAAAAGTTCACTTCCGAAAGATGAGCTATAA
Protein sequence

>MS.gene48296.t1

MEMKKLLFVSLSLALILGIAKSFDFQENDLASEKSLWDLYERWRSHHTVTRSLDEKNNRFNVFKANVMHVHNTNKLDKPYKLKLNKFADMTNYEFRSIYADSKVNHHRMFRGMSHDNGPFMYENVEDVPSSIDWRKIGAVTGVKDQGQCGSCWAFSTIVAVEGINQIKTRKLVSLSEQELVDCDTKVNQGCNGGLMENAFEFIKQNGITTETNYPYAAKEGTCNIQKENKPAVSIDGHENVPANNEAALLKAAANQPISVAIDAGGSDFQFYSEGVFTGHCGTELNHGVAIVGYGATQDGTKYWTVKNSWGSEWGEQGYIRMQRAISHKQGLCGIAMEASYPIKKSSENPTKSSLPKDEL