AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058156

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058156.t1 MTR_1g094135 96.588 381 13 0 1 381 1 381 0.0 778
MS.gene058156.t1 MTR_1g023210 51.882 372 169 4 1 370 1 364 5.25e-140 403
MS.gene058156.t1 MTR_4g071060 53.203 359 157 6 15 370 10 360 2.07e-139 401
MS.gene058156.t1 MTR_4g073660 43.562 365 161 7 8 370 6 327 3.54e-100 300
MS.gene058156.t1 MTR_4g072790 43.716 366 155 9 8 370 7 324 2.82e-99 298
MS.gene058156.t1 MTR_4g072340 43.662 355 156 6 17 370 17 328 1.42e-98 296
MS.gene058156.t1 MTR_3g116080 36.571 350 192 8 22 363 17 344 7.81e-62 202
MS.gene058156.t1 MTR_4g079440 34.349 361 206 10 15 367 8 345 3.97e-61 201
MS.gene058156.t1 MTR_4g047610 36.025 322 176 8 54 363 36 339 3.44e-59 195
MS.gene058156.t1 MTR_4g107930 34.551 356 198 10 20 363 9 341 3.23e-58 193
MS.gene058156.t1 MTR_5g022560 34.174 357 200 10 19 363 7 340 5.84e-58 192
MS.gene058156.t1 MTR_4g080730 35.207 338 176 9 37 358 21 331 1.17e-57 191
MS.gene058156.t1 MTR_4g079770 35.976 328 175 11 44 358 31 336 9.88e-57 189
MS.gene058156.t1 MTR_4g079470 35.905 337 179 11 35 358 24 336 1.32e-56 189
MS.gene058156.t1 MTR_4g080700 35.168 327 169 9 48 358 32 331 2.05e-56 188
MS.gene058156.t1 MTR_4g065077 33.422 374 209 11 2 362 6 352 4.64e-56 188
MS.gene058156.t1 MTR_4g094918 32.190 379 200 11 1 363 1 338 7.33e-56 187
MS.gene058156.t1 MTR_4g125300 37.188 320 174 9 56 368 51 350 1.53e-55 186
MS.gene058156.t1 MTR_2g016180 35.826 321 174 12 56 363 51 352 4.03e-55 189
MS.gene058156.t1 MTR_4g104370 34.024 338 193 10 34 358 15 335 9.21e-55 184
MS.gene058156.t1 MTR_4g079800 33.934 333 185 11 44 363 31 341 1.93e-54 183
MS.gene058156.t1 MTR_1g107550 35.398 339 183 12 35 358 30 347 1.99e-54 186
MS.gene058156.t1 MTR_2g090890 34.810 316 173 9 53 358 36 328 3.97e-54 182
MS.gene058156.t1 MTR_2g016270 35.202 321 161 12 56 363 51 337 9.49e-54 185
MS.gene058156.t1 MTR_8g086470 32.703 370 201 11 2 362 22 352 1.27e-53 181
MS.gene058156.t1 MTR_1g018840 33.065 372 205 10 5 358 8 353 4.47e-53 183
MS.gene058156.t1 MTR_2g015850 38.768 276 143 10 100 367 107 364 5.43e-53 180
MS.gene058156.t1 MTR_1g018840 33.065 372 205 10 5 358 8 353 5.53e-53 182
MS.gene058156.t1 MTR_3g075390 32.249 338 200 10 34 358 15 336 7.84e-52 177
MS.gene058156.t1 MTR_3g112430 34.462 325 182 11 52 363 32 338 1.01e-50 176
MS.gene058156.t1 MTR_2g083930 34.036 332 181 10 54 367 33 344 5.72e-50 171
MS.gene058156.t1 MTR_3g102220 35.000 300 157 10 76 358 75 353 7.01e-50 174
MS.gene058156.t1 MTR_2g075830 34.700 317 164 12 59 358 42 332 1.93e-48 167
MS.gene058156.t1 MTR_4g080360 34.268 321 175 12 55 360 36 335 6.72e-48 166
MS.gene058156.t1 MTR_2g015920 28.684 380 204 13 12 360 9 352 1.00e-45 161
MS.gene058156.t1 MTR_2g067900 33.133 332 185 12 50 363 10 322 5.31e-45 158
MS.gene058156.t1 MTR_7g078600 36.709 237 127 7 137 367 119 338 6.45e-44 155
MS.gene058156.t1 MTR_7g079230 31.288 326 186 11 45 358 28 327 9.07e-44 155
MS.gene058156.t1 MTR_2g015930 29.891 368 214 12 12 359 8 351 4.82e-43 154
MS.gene058156.t1 MTR_8g087510 47.015 134 62 1 182 315 23 147 3.88e-40 140
MS.gene058156.t1 MTR_2g067560 32.857 350 187 16 50 373 10 337 1.04e-39 150
MS.gene058156.t1 MTR_1g023810 38.839 224 115 8 138 357 46 251 1.43e-38 139
MS.gene058156.t1 MTR_2g066980 31.343 335 153 14 54 363 32 314 4.48e-33 126
MS.gene058156.t1 MTR_2g064475 28.415 366 194 13 50 372 10 350 1.65e-32 125
MS.gene058156.t1 MTR_7g078630 34.197 193 100 6 137 315 762 941 2.98e-24 105
MS.gene058156.t1 MTR_1g025450 38.793 116 59 3 136 248 50 156 5.49e-19 89.0
MS.gene058156.t1 MTR_2g015840 34.483 145 85 5 59 194 36 179 4.53e-16 78.2
MS.gene058156.t1 MTR_7g078310 39.815 108 56 2 137 242 148 248 4.83e-16 77.8
MS.gene058156.t1 MTR_7g111050 26.420 352 204 15 49 366 5 335 6.80e-16 78.6
MS.gene058156.t1 MTR_2g047960 42.391 92 45 1 145 236 2 85 7.22e-15 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058156.t1 AT3G54940 69.527 338 95 2 35 364 23 360 0.0 508
MS.gene058156.t1 AT2G21430 56.193 331 139 4 34 363 29 354 8.29e-139 400
MS.gene058156.t1 AT4G39090 57.055 326 135 4 48 370 43 366 1.70e-137 397
MS.gene058156.t1 AT4G16190 56.119 335 138 6 43 372 42 372 1.38e-130 379
MS.gene058156.t1 AT3G54940 65.354 254 80 2 35 280 23 276 4.34e-122 354
MS.gene058156.t1 AT1G20850 38.125 320 166 8 56 363 51 350 1.29e-65 213
MS.gene058156.t1 AT4G35350 33.791 364 212 8 8 363 7 349 1.03e-61 202
MS.gene058156.t1 AT5G60360 37.822 349 179 10 34 368 34 358 1.49e-61 202
MS.gene058156.t1 AT5G45890 37.576 330 168 11 46 358 29 337 7.72e-60 197
MS.gene058156.t1 AT5G60360 37.870 338 172 10 34 357 34 347 2.71e-59 196
MS.gene058156.t1 AT3G45310 35.714 378 205 14 7 368 3 358 3.87e-59 196
MS.gene058156.t1 AT5G60360 37.536 349 179 11 34 368 34 357 4.24e-59 196
MS.gene058156.t1 AT1G29090 38.291 316 160 12 59 358 50 346 1.08e-58 194
MS.gene058156.t1 AT1G06260 36.765 340 180 11 38 363 21 339 2.16e-58 193
MS.gene058156.t1 AT3G45310 35.519 366 198 14 7 356 3 346 1.02e-56 189
MS.gene058156.t1 AT5G43060 32.880 368 203 13 5 358 8 345 8.93e-56 190
MS.gene058156.t1 AT4G36880 34.568 324 172 10 76 380 73 375 1.46e-55 187
MS.gene058156.t1 AT1G47128 37.584 298 146 9 76 358 72 344 2.61e-55 189
MS.gene058156.t1 AT3G19400 35.191 341 184 12 38 363 27 345 1.41e-54 184
MS.gene058156.t1 AT3G19390 36.228 334 163 13 51 363 38 342 1.50e-54 186
MS.gene058156.t1 AT2G34080 34.969 326 163 12 55 358 38 336 7.79e-53 179
MS.gene058156.t1 AT5G50260 36.455 299 163 7 71 358 52 334 1.90e-52 178
MS.gene058156.t1 AT1G09850 35.331 317 178 9 56 363 32 330 2.11e-52 180
MS.gene058156.t1 AT3G48340 34.925 335 173 12 46 358 24 335 2.11e-52 178
MS.gene058156.t1 AT1G29080 36.364 319 171 12 59 363 42 342 3.64e-52 177
MS.gene058156.t1 AT4G23520 33.437 323 187 9 51 363 42 346 5.04e-52 177
MS.gene058156.t1 AT3G43960 36.424 302 171 8 56 351 41 327 6.92e-50 172
MS.gene058156.t1 AT4G11320 35.238 315 173 9 56 358 56 351 1.78e-49 171
MS.gene058156.t1 AT4G11320 35.238 315 173 9 56 358 56 351 1.78e-49 171
MS.gene058156.t1 AT3G49340 32.722 327 177 12 54 361 33 335 5.12e-49 169
MS.gene058156.t1 AT4G11310 35.000 320 167 10 56 358 49 344 7.10e-49 169
MS.gene058156.t1 AT3G48350 31.405 363 210 12 33 377 13 354 6.83e-48 166
MS.gene058156.t1 AT2G27420 31.627 332 175 10 54 358 33 339 3.99e-47 164
MS.gene058156.t1 AT4G35350 32.857 280 174 4 8 285 7 274 8.95e-47 161
MS.gene058156.t1 AT1G29110 32.381 315 168 11 59 358 41 325 2.77e-40 145
MS.gene058156.t1 AT3G19400 34.646 254 150 7 38 285 27 270 6.18e-40 144
MS.gene058156.t1 AT3G48350 30.943 265 158 8 33 285 13 264 2.91e-33 126
MS.gene058156.t1 AT1G02305 27.778 252 140 10 141 366 106 341 8.42e-15 75.5
MS.gene058156.t1 AT4G01610 25.532 282 167 12 103 358 66 330 5.44e-14 73.2
MS.gene058156.t1 AT4G01610 25.177 282 168 12 103 358 66 330 5.82e-13 70.1
MS.gene058156.t1 AT1G02300 24.281 313 174 12 103 369 66 361 9.76e-12 66.2

Find 89 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTAAATAAGCAGCAATT+TGG 0.276229 1.4:-73666436 None:intergenic
CACAAGGTTTCTCGATTCTT+AGG 0.295720 1.4:+73666795 MS.gene058156:CDS
GCTTGAGGCTGGTGGATTAG+AGG 0.315848 1.4:+73666307 MS.gene058156:CDS
TTCCCTTGTAGAGTAAGTTT+TGG 0.331460 1.4:-73665200 None:intergenic
GAATTCTTGATGATCCAATA+TGG 0.338546 1.4:-73666830 None:intergenic
AGCCTCAAGCAAATAATTAT+AGG 0.341198 1.4:-73666294 None:intergenic
CCGCCATGAAAACTTGATTC+AGG 0.341418 1.4:+73665096 MS.gene058156:CDS
AACAGAACTAGGTAGCTAAT+AGG 0.375008 1.4:-73666984 None:intergenic
TGGCGAGGTTGCACCGCCCT+TGG 0.393236 1.4:+73665396 MS.gene058156:CDS
GAGTTTGAGCGGTTCTATAC+TGG 0.393845 1.4:+73665340 MS.gene058156:CDS
GATAAGACATCATGTGATAA+TGG 0.394339 1.4:+73666245 MS.gene058156:CDS
GGCGGTGAAACGCAGTTGAT+AGG 0.395575 1.4:-73665078 None:intergenic
GGCTTCGCAAGAAACCATAT+TGG 0.397056 1.4:+73666816 MS.gene058156:CDS
CTTGATCCAACCGCAATTCA+TGG 0.398823 1.4:+73665286 MS.gene058156:CDS
TATAATTATTTGCTTGAGGC+TGG 0.400349 1.4:+73666296 MS.gene058156:CDS
CGGTTCTATACTGGTGTTAG+AGG 0.407090 1.4:+73665349 MS.gene058156:CDS
GTTCTCATCCACAGGTAGAT+TGG 0.415931 1.4:-73666414 None:intergenic
AGGGTAAATGTGGATCTTGC+TGG 0.419704 1.4:+73665887 MS.gene058156:intron
ATTCTCTTGCTACATATAAG+AGG 0.422987 1.4:-73666737 None:intergenic
GGTTGCACCGCCCTTGGATG+TGG 0.428740 1.4:+73665402 MS.gene058156:CDS
CTTGGATGTGGAAGGATTGC+CGG 0.431739 1.4:+73665414 MS.gene058156:CDS
AAGAGTATTTACTACGCCTT+GGG 0.438150 1.4:+73665221 MS.gene058156:CDS
TGCTGGGCTTTCAGCACTAC+AGG 0.442971 1.4:+73665904 MS.gene058156:CDS
ATACCCGTACACTGGTGGTA+AGG 0.455502 1.4:+73666340 MS.gene058156:CDS
AGCACTACAGGATCTATAGA+AGG 0.470148 1.4:+73665916 MS.gene058156:CDS
GAAGAGTATTTACTACGCCT+TGG 0.482670 1.4:+73665220 MS.gene058156:CDS
GAATTTCGATTGGAGGGAGA+AGG 0.483095 1.4:+73665438 MS.gene058156:CDS
AATTTCGATTGGAGGGAGAA+GGG 0.491914 1.4:+73665439 MS.gene058156:CDS
TCATGTGATAATGGTTGTAA+TGG 0.500611 1.4:+73666254 MS.gene058156:CDS
TGCCGGAGAATTTCGATTGG+AGG 0.504986 1.4:+73665431 MS.gene058156:CDS
TCCCTCCAATCGAAATTCTC+CGG 0.505325 1.4:-73665433 None:intergenic
GCCGGAGAATTTCGATTGGA+GGG 0.506193 1.4:+73665432 MS.gene058156:CDS
CGGCAATCCTTCCACATCCA+AGG 0.507533 1.4:-73665413 None:intergenic
ACTCCAAAACTTACTCTACA+AGG 0.509081 1.4:+73665197 MS.gene058156:CDS
AACCACGGTGTATTGCTTGT+GGG 0.510752 1.4:+73666764 MS.gene058156:CDS
TACAAGCTTTGCAGAGGGCA+TGG 0.513945 1.4:+73666884 MS.gene058156:CDS
AATTATTTGCTTGAGGCTGG+TGG 0.514952 1.4:+73666299 MS.gene058156:CDS
GCAATTTGGTTCTCATCCAC+AGG 0.515183 1.4:-73666422 None:intergenic
TGCCTATAATTATTTGCTTG+AGG 0.515816 1.4:+73666292 MS.gene058156:CDS
TTCTATACTGGTGTTAGAGG+TGG 0.516856 1.4:+73665352 MS.gene058156:CDS
GGTGGATTCCCCTCGAGAAA+CGG 0.519839 1.4:+73665370 MS.gene058156:CDS
GATTGCCGGAGAATTTCGAT+TGG 0.521822 1.4:+73665428 MS.gene058156:CDS
TTCATGCAAACTTACATTGG+TGG 0.523262 1.4:+73666704 MS.gene058156:CDS
TCACCCTTACCACCAGTGTA+CGG 0.527618 1.4:-73666344 None:intergenic
CACCCTTACCACCAGTGTAC+GGG 0.533213 1.4:-73666343 None:intergenic
GCTGCTTATTTAGTTAATCA+CGG 0.543083 1.4:+73666443 MS.gene058156:CDS
GCGGTGAAACGCAGTTGATA+GGG 0.543444 1.4:-73665077 None:intergenic
GGCAATCCTTCCACATCCAA+GGG 0.544410 1.4:-73665412 None:intergenic
CACAATGGTTTCTGCTGCAA+TGG 0.544762 1.4:+73666922 MS.gene058156:CDS
AATGGTTTCTGCTGCAATGG+TGG 0.547337 1.4:+73666925 MS.gene058156:CDS
GAACCACGGTGTATTGCTTG+TGG 0.550119 1.4:+73666763 MS.gene058156:CDS
TGTTACTGGAGTCAGGATGC+AGG 0.550670 1.4:+73665465 MS.gene058156:CDS
CTTGTGGGTTATAATGCACA+AGG 0.551826 1.4:+73666779 MS.gene058156:CDS
ATTTCGATTGGAGGGAGAAG+GGG 0.553540 1.4:+73665440 MS.gene058156:CDS
GCACCGCCCTTGGATGTGGA+AGG 0.555789 1.4:+73665406 MS.gene058156:CDS
GGGTAAATGTGGATCTTGCT+GGG 0.557750 1.4:+73665888 MS.gene058156:intron
TTGCGGTTGGATCAAGTGCT+TGG 0.562169 1.4:-73665279 None:intergenic
CGCCAACTCCGTTTCTCGAG+GGG 0.564041 1.4:-73665378 None:intergenic
TTTCGATTGGAGGGAGAAGG+GGG 0.564832 1.4:+73665441 MS.gene058156:CDS
AAACACGTGAGAGATATGAT+TGG 0.566506 1.4:-73665022 None:intergenic
TAAGGGGACTTACTTGCAAG+TGG 0.568709 1.4:-73666467 None:intergenic
CTCGCCAACTCCGTTTCTCG+AGG 0.568856 1.4:-73665380 None:intergenic
TTGGATCATCAAGAATTCGT+GGG 0.578311 1.4:+73666835 MS.gene058156:CDS
TACCCGTACACTGGTGGTAA+GGG 0.579815 1.4:+73666341 MS.gene058156:CDS
TTCCCCTCGAGAAACGGAGT+TGG 0.586466 1.4:+73665376 MS.gene058156:CDS
TTCTCTTGCTACATATAAGA+GGG 0.587349 1.4:-73666736 None:intergenic
TCGCCAACTCCGTTTCTCGA+GGG 0.588026 1.4:-73665379 None:intergenic
CTCGAGAAACGGAGTTGGCG+AGG 0.594223 1.4:+73665381 MS.gene058156:CDS
TCTCTGACGACGAGTTTGAG+CGG 0.604401 1.4:+73665329 MS.gene058156:CDS
GTAACACCATGAATTGCGGT+TGG 0.604723 1.4:-73665292 None:intergenic
ATTGGATCATCAAGAATTCG+TGG 0.604812 1.4:+73666834 MS.gene058156:CDS
TGCAGAGGGCATGGTATGTG+TGG 0.615133 1.4:+73666893 MS.gene058156:CDS
TCTTAGTGAACAACAGCTTG+TGG 0.616431 1.4:+73665972 MS.gene058156:CDS
GGGTATTACAAGCTTTGCAG+AGG 0.620670 1.4:+73666878 MS.gene058156:CDS
GCTTGTGGACTGTGACAGCA+AGG 0.622428 1.4:+73665987 MS.gene058156:CDS
CTCCAAAACTTACTCTACAA+GGG 0.624411 1.4:+73665198 MS.gene058156:CDS
GAAACTTCATACCCGTACAC+TGG 0.628584 1.4:+73666332 MS.gene058156:CDS
GGTATTACAAGCTTTGCAGA+GGG 0.636304 1.4:+73666879 MS.gene058156:CDS
CTGAGTAACACCATGAATTG+CGG 0.643000 1.4:-73665296 None:intergenic
TGTGATAATGGTTGTAATGG+AGG 0.643668 1.4:+73666257 MS.gene058156:CDS
TGAGGCTGGTGGATTAGAGG+AGG 0.654720 1.4:+73666310 MS.gene058156:CDS
ACTTCATACCCGTACACTGG+TGG 0.657388 1.4:+73666335 MS.gene058156:CDS
AATCCTTCCACATCCAAGGG+CGG 0.664048 1.4:-73665409 None:intergenic
TTGATAGGGTTAGAGCGTAG+AGG 0.669135 1.4:-73665063 None:intergenic
TGGATCATCAAGAATTCGTG+GGG 0.675621 1.4:+73666836 MS.gene058156:CDS
AAATTTCACCAATCTACCTG+TGG 0.676633 1.4:+73666406 MS.gene058156:CDS
AGCAAGAGAATGCTGAACCA+CGG 0.698635 1.4:+73666749 MS.gene058156:CDS
AACCCACAAGCAATACACCG+TGG 0.800815 1.4:-73666766 None:intergenic
TATGTGTGGAATGAACACAA+TGG 0.864374 1.4:+73666907 MS.gene058156:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATAAAAAAA+TGG + chr1.4:73665818-73665837 MS.gene058156:intron 0.0%
!!! AAATTAAACAGTTTTTATTT+AGG - chr1.4:73665861-73665880 None:intergenic 10.0%
!! AATGTGATATTTATAGTAAT+AGG + chr1.4:73665610-73665629 MS.gene058156:intron 15.0%
!! AGAACTTTGTAATTAATTAA+GGG - chr1.4:73666487-73666506 None:intergenic 15.0%
!! TAGAACTTTGTAATTAATTA+AGG - chr1.4:73666488-73666507 None:intergenic 15.0%
!!! TATTTATGTTTCTAATGATT+AGG + chr1.4:73665741-73665760 MS.gene058156:intron 15.0%
!!! TTGTTTTTTTATTTACAATG+AGG + chr1.4:73665653-73665672 MS.gene058156:intron 15.0%
!! AACTTAAATAAATTACATCC+CGG - chr1.4:73665767-73665786 None:intergenic 20.0%
!! AAGTATAGAACATAGTTAAT+TGG - chr1.4:73666065-73666084 None:intergenic 20.0%
!! GAACTTTGTAATTAATTAAG+GGG - chr1.4:73666486-73666505 None:intergenic 20.0%
!!! AAACTGTTTAATTTTGAAAC+AGG + chr1.4:73665867-73665886 MS.gene058156:intron 20.0%
!!! AACTGTTTAATTTTGAAACA+GGG + chr1.4:73665868-73665887 MS.gene058156:intron 20.0%
!!! ATTTTAACTGCAATTTTCTT+TGG - chr1.4:73666383-73666402 None:intergenic 20.0%
!!! TAATCTTCTGTTTTATTAAC+TGG + chr1.4:73666176-73666195 MS.gene058156:intron 20.0%
!!! TTATTTAGGATAATGTTTCA+TGG - chr1.4:73665847-73665866 None:intergenic 20.0%
! CAAACTAGAAATTTCAAACA+TGG - chr1.4:73665539-73665558 None:intergenic 25.0%
! TAACTAAATAAGCAGCAATT+TGG - chr1.4:73666439-73666458 None:intergenic 25.0%
!!! CATGTTTGAAATTTCTAGTT+TGG + chr1.4:73665537-73665556 MS.gene058156:intron 25.0%
AGCCTCAAGCAAATAATTAT+AGG - chr1.4:73666297-73666316 None:intergenic 30.0%
ATTCTCTTGCTACATATAAG+AGG - chr1.4:73666740-73666759 None:intergenic 30.0%
GATAAGACATCATGTGATAA+TGG + chr1.4:73666245-73666264 MS.gene058156:CDS 30.0%
GCTGCTTATTTAGTTAATCA+CGG + chr1.4:73666443-73666462 MS.gene058156:CDS 30.0%
TATAATTATTTGCTTGAGGC+TGG + chr1.4:73666296-73666315 MS.gene058156:CDS 30.0%
TGCCTATAATTATTTGCTTG+AGG + chr1.4:73666292-73666311 MS.gene058156:CDS 30.0%
TTCTCTTGCTACATATAAGA+GGG - chr1.4:73666739-73666758 None:intergenic 30.0%
! GAATTCTTGATGATCCAATA+TGG - chr1.4:73666833-73666852 None:intergenic 30.0%
! GTTTTCATGCAAACTTACAT+TGG + chr1.4:73666701-73666720 MS.gene058156:CDS 30.0%
! TATGTTTCTAATGATTAGGC+CGG + chr1.4:73665745-73665764 MS.gene058156:intron 30.0%
!! TCATGTGATAATGGTTGTAA+TGG + chr1.4:73666254-73666273 MS.gene058156:CDS 30.0%
!!! ATTTTGAAACAGGGTAAATG+TGG + chr1.4:73665877-73665896 MS.gene058156:intron 30.0%
AAACACGTGAGAGATATGAT+TGG - chr1.4:73665025-73665044 None:intergenic 35.0%
AAATTTCACCAATCTACCTG+TGG + chr1.4:73666406-73666425 MS.gene058156:CDS 35.0%
ACTCCAAAACTTACTCTACA+AGG + chr1.4:73665197-73665216 MS.gene058156:CDS 35.0%
ATTGGATCATCAAGAATTCG+TGG + chr1.4:73666834-73666853 MS.gene058156:CDS 35.0%
CTCCAAAACTTACTCTACAA+GGG + chr1.4:73665198-73665217 MS.gene058156:CDS 35.0%
GAGAAAAATGGGGAGAAAAA+GGG + chr1.4:73666858-73666877 MS.gene058156:CDS 35.0%
GATGAATTGCGAAACTTAGA+CGG + chr1.4:73666524-73666543 MS.gene058156:intron 35.0%
TATGTGTGGAATGAACACAA+TGG + chr1.4:73666907-73666926 MS.gene058156:CDS 35.0%
TGTTATGTCACACTTGACAA+AGG - chr1.4:73666225-73666244 None:intergenic 35.0%
TTCATGCAAACTTACATTGG+TGG + chr1.4:73666704-73666723 MS.gene058156:CDS 35.0%
TTGGATCATCAAGAATTCGT+GGG + chr1.4:73666835-73666854 MS.gene058156:CDS 35.0%
! AAGATTAGCAAGAGCATAGT+TGG - chr1.4:73666163-73666182 None:intergenic 35.0%
! ATGTTTCTAATGATTAGGCC+GGG + chr1.4:73665746-73665765 MS.gene058156:intron 35.0%
! CATCCTGAATCAAGTTTTCA+TGG - chr1.4:73665102-73665121 None:intergenic 35.0%
! TGGGATTTTTGCCAAAAACT+TGG + chr1.4:73665240-73665259 MS.gene058156:CDS 35.0%
! TTCCCTTGTAGAGTAAGTTT+TGG - chr1.4:73665203-73665222 None:intergenic 35.0%
! TTTTCCTGTGGCAAGAAAAT+TGG - chr1.4:73665944-73665963 None:intergenic 35.0%
!! AAGAGTATTTACTACGCCTT+GGG + chr1.4:73665221-73665240 MS.gene058156:CDS 35.0%
!! TGTGATAATGGTTGTAATGG+AGG + chr1.4:73666257-73666276 MS.gene058156:CDS 35.0%
!!! AGTTTTTGGCAAAAATCCCA+AGG - chr1.4:73665240-73665259 None:intergenic 35.0%
!!! GCATATGATTTGTTTTCAGC+AGG - chr1.4:73666962-73666981 None:intergenic 35.0%
AACTCTAATCATGTGCAGTG+GGG + chr1.4:73666669-73666688 MS.gene058156:intron 40.0%
AATTATTTGCTTGAGGCTGG+TGG + chr1.4:73666299-73666318 MS.gene058156:CDS 40.0%
AATTCGTGGGGAGAAAAATG+GGG + chr1.4:73666848-73666867 MS.gene058156:CDS 40.0%
AATTTCGATTGGAGGGAGAA+GGG + chr1.4:73665439-73665458 MS.gene058156:CDS 40.0%
AGAATTCGTGGGGAGAAAAA+TGG + chr1.4:73666846-73666865 MS.gene058156:CDS 40.0%
AGCACTACAGGATCTATAGA+AGG + chr1.4:73665916-73665935 MS.gene058156:CDS 40.0%
CAAAAACTTGGTCAAAGCTG+TGG + chr1.4:73665252-73665271 MS.gene058156:CDS 40.0%
CACAAGGTTTCTCGATTCTT+AGG + chr1.4:73666795-73666814 MS.gene058156:CDS 40.0%
CTGAGTAACACCATGAATTG+CGG - chr1.4:73665299-73665318 None:intergenic 40.0%
GAACTCTAATCATGTGCAGT+GGG + chr1.4:73666668-73666687 MS.gene058156:intron 40.0%
GAATTCGTGGGGAGAAAAAT+GGG + chr1.4:73666847-73666866 MS.gene058156:CDS 40.0%
GGAGAAAAATGGGGAGAAAA+AGG + chr1.4:73666857-73666876 MS.gene058156:CDS 40.0%
GGTATTACAAGCTTTGCAGA+GGG + chr1.4:73666879-73666898 MS.gene058156:CDS 40.0%
TCTTAGTGAACAACAGCTTG+TGG + chr1.4:73665972-73665991 MS.gene058156:CDS 40.0%
TGAACTCTAATCATGTGCAG+TGG + chr1.4:73666667-73666686 MS.gene058156:intron 40.0%
TGGATCATCAAGAATTCGTG+GGG + chr1.4:73666836-73666855 MS.gene058156:CDS 40.0%
! AAGACTGAGTAGTTTTCCTG+TGG - chr1.4:73665956-73665975 None:intergenic 40.0%
! CCTGAATCAAGTTTTCATGG+CGG - chr1.4:73665099-73665118 None:intergenic 40.0%
! CTTGTGGGTTATAATGCACA+AGG + chr1.4:73666779-73666798 MS.gene058156:CDS 40.0%
! TTCTATACTGGTGTTAGAGG+TGG + chr1.4:73665352-73665371 MS.gene058156:CDS 40.0%
!! CACAGCTTTGACCAAGTTTT+TGG - chr1.4:73665254-73665273 None:intergenic 40.0%
!! GAAGAGTATTTACTACGCCT+TGG + chr1.4:73665220-73665239 MS.gene058156:CDS 40.0%
AACCACGGTGTATTGCTTGT+GGG + chr1.4:73666764-73666783 MS.gene058156:CDS 45.0%
AATGGTTTCTGCTGCAATGG+TGG + chr1.4:73666925-73666944 MS.gene058156:CDS 45.0%
ACTCTAATCATGTGCAGTGG+GGG + chr1.4:73666670-73666689 MS.gene058156:intron 45.0%
AGCAAGAGAATGCTGAACCA+CGG + chr1.4:73666749-73666768 MS.gene058156:CDS 45.0%
AGGGTAAATGTGGATCTTGC+TGG + chr1.4:73665887-73665906 MS.gene058156:intron 45.0%
ATTTCGATTGGAGGGAGAAG+GGG + chr1.4:73665440-73665459 MS.gene058156:CDS 45.0%
CACAATGGTTTCTGCTGCAA+TGG + chr1.4:73666922-73666941 MS.gene058156:CDS 45.0%
CCGCCATGAAAACTTGATTC+AGG + chr1.4:73665096-73665115 MS.gene058156:CDS 45.0%
CTATGTAACACCGACACTTC+AGG - chr1.4:73666602-73666621 None:intergenic 45.0%
CTTGATCCAACCGCAATTCA+TGG + chr1.4:73665286-73665305 MS.gene058156:CDS 45.0%
GAAACTTCATACCCGTACAC+TGG + chr1.4:73666332-73666351 MS.gene058156:CDS 45.0%
GAATTTCGATTGGAGGGAGA+AGG + chr1.4:73665438-73665457 MS.gene058156:CDS 45.0%
GAGTTTGAGCGGTTCTATAC+TGG + chr1.4:73665340-73665359 MS.gene058156:CDS 45.0%
GATTGCCGGAGAATTTCGAT+TGG + chr1.4:73665428-73665447 MS.gene058156:CDS 45.0%
GGCTTCGCAAGAAACCATAT+TGG + chr1.4:73666816-73666835 MS.gene058156:CDS 45.0%
GGGTAAATGTGGATCTTGCT+GGG + chr1.4:73665888-73665907 MS.gene058156:intron 45.0%
GGGTATTACAAGCTTTGCAG+AGG + chr1.4:73666878-73666897 MS.gene058156:CDS 45.0%
GTAACACCATGAATTGCGGT+TGG - chr1.4:73665295-73665314 None:intergenic 45.0%
GTTCTCATCCACAGGTAGAT+TGG - chr1.4:73666417-73666436 None:intergenic 45.0%
TAAGGGGACTTACTTGCAAG+TGG - chr1.4:73666470-73666489 None:intergenic 45.0%
TCCCTCCAATCGAAATTCTC+CGG - chr1.4:73665436-73665455 None:intergenic 45.0%
TTGATAGGGTTAGAGCGTAG+AGG - chr1.4:73665066-73665085 None:intergenic 45.0%
! CGGTTCTATACTGGTGTTAG+AGG + chr1.4:73665349-73665368 MS.gene058156:CDS 45.0%
!! GCAATTTGGTTCTCATCCAC+AGG - chr1.4:73666425-73666444 None:intergenic 45.0%
AACCCACAAGCAATACACCG+TGG - chr1.4:73666769-73666788 None:intergenic 50.0%
AATCCTTCCACATCCAAGGG+CGG - chr1.4:73665412-73665431 None:intergenic 50.0%
ACTTCATACCCGTACACTGG+TGG + chr1.4:73666335-73666354 MS.gene058156:CDS 50.0%
ATACCCGTACACTGGTGGTA+AGG + chr1.4:73666340-73666359 MS.gene058156:CDS 50.0%
ATGTGCAGTGGGGGTAAATG+CGG + chr1.4:73666679-73666698 MS.gene058156:intron 50.0%
CTCCGACAAACCTGAAGTGT+CGG + chr1.4:73666589-73666608 MS.gene058156:intron 50.0%
CTTGGATGTGGAAGGATTGC+CGG + chr1.4:73665414-73665433 MS.gene058156:CDS 50.0%
GAACCACGGTGTATTGCTTG+TGG + chr1.4:73666763-73666782 MS.gene058156:CDS 50.0%
GCCGGAGAATTTCGATTGGA+GGG + chr1.4:73665432-73665451 MS.gene058156:CDS 50.0%
GGCAATCCTTCCACATCCAA+GGG - chr1.4:73665415-73665434 None:intergenic 50.0%
TACAAGCTTTGCAGAGGGCA+TGG + chr1.4:73666884-73666903 MS.gene058156:CDS 50.0%
TACCCGTACACTGGTGGTAA+GGG + chr1.4:73666341-73666360 MS.gene058156:CDS 50.0%
TCACCCTTACCACCAGTGTA+CGG - chr1.4:73666347-73666366 None:intergenic 50.0%
TCTCTGACGACGAGTTTGAG+CGG + chr1.4:73665329-73665348 MS.gene058156:CDS 50.0%
TGCCGGAGAATTTCGATTGG+AGG + chr1.4:73665431-73665450 MS.gene058156:CDS 50.0%
TGTTACTGGAGTCAGGATGC+AGG + chr1.4:73665465-73665484 MS.gene058156:CDS 50.0%
TTGCGGTTGGATCAAGTGCT+TGG - chr1.4:73665282-73665301 None:intergenic 50.0%
TTTCGATTGGAGGGAGAAGG+GGG + chr1.4:73665441-73665460 MS.gene058156:CDS 50.0%
! CACCGACACTTCAGGTTTGT+CGG - chr1.4:73666594-73666613 None:intergenic 50.0%
! GCGGTGAAACGCAGTTGATA+GGG - chr1.4:73665080-73665099 None:intergenic 50.0%
! GGAGCCAATTTTCTTGCCAC+AGG + chr1.4:73665937-73665956 MS.gene058156:CDS 50.0%
CACCCTTACCACCAGTGTAC+GGG - chr1.4:73666346-73666365 None:intergenic 55.0%
CGGCAATCCTTCCACATCCA+AGG - chr1.4:73665416-73665435 None:intergenic 55.0%
GGCGGTGAAACGCAGTTGAT+AGG - chr1.4:73665081-73665100 None:intergenic 55.0%
TCGCCAACTCCGTTTCTCGA+GGG - chr1.4:73665382-73665401 None:intergenic 55.0%
TGCTGGGCTTTCAGCACTAC+AGG + chr1.4:73665904-73665923 MS.gene058156:CDS 55.0%
TTCCCCTCGAGAAACGGAGT+TGG + chr1.4:73665376-73665395 MS.gene058156:CDS 55.0%
! GCTTGTGGACTGTGACAGCA+AGG + chr1.4:73665987-73666006 MS.gene058156:CDS 55.0%
! GGTGGATTCCCCTCGAGAAA+CGG + chr1.4:73665370-73665389 MS.gene058156:CDS 55.0%
! TGCAGAGGGCATGGTATGTG+TGG + chr1.4:73666893-73666912 MS.gene058156:CDS 55.0%
!! GCTTGAGGCTGGTGGATTAG+AGG + chr1.4:73666307-73666326 MS.gene058156:CDS 55.0%
!! TGAGGCTGGTGGATTAGAGG+AGG + chr1.4:73666310-73666329 MS.gene058156:CDS 55.0%
AGGGAGAAGGGGGCTGTTAC+TGG + chr1.4:73665451-73665470 MS.gene058156:CDS 60.0%
AGGGGGCTGTTACTGGAGTC+AGG + chr1.4:73665458-73665477 MS.gene058156:CDS 60.0%
CGCCAACTCCGTTTCTCGAG+GGG - chr1.4:73665381-73665400 None:intergenic 60.0%
CTCGAGAAACGGAGTTGGCG+AGG + chr1.4:73665381-73665400 MS.gene058156:CDS 60.0%
CTCGCCAACTCCGTTTCTCG+AGG - chr1.4:73665383-73665402 None:intergenic 60.0%
GCACCGCCCTTGGATGTGGA+AGG + chr1.4:73665406-73665425 MS.gene058156:CDS 65.0%
GGTTGCACCGCCCTTGGATG+TGG + chr1.4:73665402-73665421 MS.gene058156:CDS 65.0%
TGGCGAGGTTGCACCGCCCT+TGG + chr1.4:73665396-73665415 MS.gene058156:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 73665010 73666991 73665010 ID=MS.gene058156
chr1.4 mRNA 73665010 73666991 73665010 ID=MS.gene058156.t1;Parent=MS.gene058156
chr1.4 exon 73665010 73665486 73665010 ID=MS.gene058156.t1.exon1;Parent=MS.gene058156.t1
chr1.4 CDS 73665010 73665486 73665010 ID=cds.MS.gene058156.t1;Parent=MS.gene058156.t1
chr1.4 exon 73665889 73666008 73665889 ID=MS.gene058156.t1.exon2;Parent=MS.gene058156.t1
chr1.4 CDS 73665889 73666008 73665889 ID=cds.MS.gene058156.t1;Parent=MS.gene058156.t1
chr1.4 exon 73666233 73666476 73666233 ID=MS.gene058156.t1.exon3;Parent=MS.gene058156.t1
chr1.4 CDS 73666233 73666476 73666233 ID=cds.MS.gene058156.t1;Parent=MS.gene058156.t1
chr1.4 exon 73666687 73666991 73666687 ID=MS.gene058156.t1.exon4;Parent=MS.gene058156.t1
chr1.4 CDS 73666687 73666991 73666687 ID=cds.MS.gene058156.t1;Parent=MS.gene058156.t1
Gene Sequence

>MS.gene058156

ATGGTAACAAAACCAATCATATCTCTCACGTGTTTTGCACGTGTTACAATCTTCCTCTACGCTCTAACCCTATCAACTGCGTTTCACCGCCATGAAAACTTGATTCAGGATGTAGCTAAAAAGCTTGAACTCAAAGACAACGAGCTTCTGAAAACTGAGAAGAAGTTCAAAGTTTTCATGCAAGATTACTCCAAAACTTACTCTACAAGGGAAGAGTATTTACTACGCCTTGGGATTTTTGCCAAAAACTTGGTCAAAGCTGTGGAACACCAAGCACTTGATCCAACCGCAATTCATGGTGTTACTCAGTTCTCTGATCTCTCTGACGACGAGTTTGAGCGGTTCTATACTGGTGTTAGAGGTGGATTCCCCTCGAGAAACGGAGTTGGCGAGGTTGCACCGCCCTTGGATGTGGAAGGATTGCCGGAGAATTTCGATTGGAGGGAGAAGGGGGCTGTTACTGGAGTCAGGATGCAGGTACATGCATGAGTTTATTATATATGCTAATTTGATTCAACTACACATTCCATGTTTGAAATTTCTAGTTTGGTTAATATGAAGTATTTGAAAACTGTAGAATTAGATAAATAAAATGAAAACAATGTGATATTTATAGTAATAGGAATATGATAAAACTTAGTTTTTGTTTTTTTATTTACAATGAGGATAAGACTTAGTTCAAGTTGTTTACATTTTTCATTAGAATACTAAAAAAAATGTGAAGTTATTTCTATTTATGTTTCTAATGATTAGGCCGGGATGTAATTTATTTAAGTTTTAATTTTTATATGCTGTTTCTCATTTCTTTTAAATAAATAAATAAAAAAATGGTGTCCATGAAACATTATCCTAAATAAAAACTGTTTAATTTTGAAACAGGGTAAATGTGGATCTTGCTGGGCTTTCAGCACTACAGGATCTATAGAAGGAGCCAATTTTCTTGCCACAGGAAAACTACTCAGTCTTAGTGAACAACAGCTTGTGGACTGTGACAGCAAGGTATATAAGCATCTCTATGTTTATGACTTTTTCATTGAAGACACTTATTGTCACCAATTAACTATGTTCTATACTTCAAAATATGATAGAATGAATAAATTTTTTTCAATTTTATTAGATAAATTTTTGATGAATTTCTCAATGATTCAAGCCAACTATGCTCTTGCTAATCTTCTGTTTTATTAACTGGATATTTCTTGTTCTACTATTTTGCCTTTGTCAAGTGTGACATAACAGATAAGACATCATGTGATAATGGTTGTAATGGAGGTCTTATGACAAATGCCTATAATTATTTGCTTGAGGCTGGTGGATTAGAGGAGGAAACTTCATACCCGTACACTGGTGGTAAGGGTGAATGCAAGTTTGATCCAAAGAAAATTGCAGTTAAAATCACAAATTTCACCAATCTACCTGTGGATGAGAACCAAATTGCTGCTTATTTAGTTAATCACGGTCCACTTGCAAGTAAGTCCCCTTAATTAATTACAAAGTTCTAACATATATGCATGTGTGATGAATTGCGAAACTTAGACGGACACTCACATTGATTGAATGTAATCACATGCAACACATCAGACTCCGACAAACCTGAAGTGTCGGTGTTACATAGTATGCGCGACATTAATTTGTCGATCTTTAATGTTTAAATTGATCATGAACTCTAATCATGTGCAGTGGGGGTAAATGCGGTTTTCATGCAAACTTACATTGGTGGTGTATCATGCCCTCTTATATGTAGCAAGAGAATGCTGAACCACGGTGTATTGCTTGTGGGTTATAATGCACAAGGTTTCTCGATTCTTAGGCTTCGCAAGAAACCATATTGGATCATCAAGAATTCGTGGGGAGAAAAATGGGGAGAAAAAGGGTATTACAAGCTTTGCAGAGGGCATGGTATGTGTGGAATGAACACAATGGTTTCTGCTGCAATGGTGGCTCAAACACAACCTGCTGAAAACAAATCATATGCTTCCTATTAG
Protein sequence

>MS.gene058156.t1

MVTKPIISLTCFARVTIFLYALTLSTAFHRHENLIQDVAKKLELKDNELLKTEKKFKVFMQDYSKTYSTREEYLLRLGIFAKNLVKAVEHQALDPTAIHGVTQFSDLSDDEFERFYTGVRGGFPSRNGVGEVAPPLDVEGLPENFDWREKGAVTGVRMQGKCGSCWAFSTTGSIEGANFLATGKLLSLSEQQLVDCDSKCDITDKTSCDNGCNGGLMTNAYNYLLEAGGLEEETSYPYTGGKGECKFDPKKIAVKITNFTNLPVDENQIAAYLVNHGPLAMGVNAVFMQTYIGGVSCPLICSKRMLNHGVLLVGYNAQGFSILRLRKKPYWIIKNSWGEKWGEKGYYKLCRGHGMCGMNTMVSAAMVAQTQPAENKSYASY