Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24818.t1 | ABF18679.1 | 99.4 | 350 | 2 | 0 | 1 | 350 | 1 | 350 | 6.00E-206 | 726.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24818.t1 | Q8RWQ9 | 73.1 | 350 | 89 | 2 | 5 | 350 | 10 | 358 | 2.2e-156 | 553.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24818.t1 | Q1KK73 | 99.4 | 350 | 2 | 0 | 1 | 350 | 1 | 350 | 4.3e-206 | 726.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24818.t1 | MTR_4g125300 | 98.571 | 350 | 5 | 0 | 1 | 350 | 1 | 350 | 0.0 | 726 |
MS.gene24818.t1 | MTR_3g075390 | 38.630 | 365 | 186 | 11 | 1 | 348 | 1 | 344 | 2.68e-73 | 231 |
MS.gene24818.t1 | MTR_4g094918 | 42.997 | 307 | 154 | 9 | 57 | 348 | 41 | 341 | 5.28e-73 | 231 |
MS.gene24818.t1 | MTR_4g047610 | 43.366 | 309 | 156 | 12 | 53 | 348 | 40 | 342 | 5.13e-72 | 228 |
MS.gene24818.t1 | MTR_5g022560 | 41.883 | 308 | 162 | 10 | 53 | 348 | 41 | 343 | 2.01e-71 | 226 |
MS.gene24818.t1 | MTR_4g079470 | 42.434 | 304 | 157 | 11 | 57 | 348 | 47 | 344 | 5.28e-71 | 225 |
MS.gene24818.t1 | MTR_4g079770 | 42.434 | 304 | 157 | 11 | 57 | 348 | 47 | 344 | 5.45e-71 | 225 |
MS.gene24818.t1 | MTR_1g107550 | 41.265 | 332 | 175 | 10 | 31 | 348 | 30 | 355 | 2.74e-70 | 227 |
MS.gene24818.t1 | MTR_4g079440 | 41.311 | 305 | 168 | 6 | 51 | 349 | 46 | 345 | 7.71e-70 | 222 |
MS.gene24818.t1 | MTR_4g079800 | 42.434 | 304 | 157 | 12 | 57 | 348 | 47 | 344 | 1.20e-69 | 221 |
MS.gene24818.t1 | MTR_4g080700 | 38.080 | 323 | 183 | 9 | 34 | 348 | 26 | 339 | 1.37e-69 | 221 |
MS.gene24818.t1 | MTR_4g080730 | 39.604 | 303 | 171 | 7 | 53 | 348 | 42 | 339 | 6.13e-69 | 219 |
MS.gene24818.t1 | MTR_3g116080 | 40.391 | 307 | 168 | 8 | 51 | 348 | 47 | 347 | 4.05e-68 | 218 |
MS.gene24818.t1 | MTR_4g107930 | 40.909 | 308 | 165 | 10 | 53 | 348 | 42 | 344 | 2.28e-66 | 213 |
MS.gene24818.t1 | MTR_1g018840 | 38.227 | 361 | 190 | 12 | 6 | 348 | 16 | 361 | 3.76e-66 | 216 |
MS.gene24818.t1 | MTR_1g018840 | 38.122 | 362 | 191 | 12 | 5 | 348 | 15 | 361 | 3.90e-66 | 216 |
MS.gene24818.t1 | MTR_3g102220 | 41.667 | 312 | 153 | 12 | 57 | 348 | 59 | 361 | 1.67e-65 | 214 |
MS.gene24818.t1 | MTR_2g015920 | 33.613 | 357 | 214 | 8 | 6 | 348 | 11 | 358 | 2.33e-65 | 211 |
MS.gene24818.t1 | MTR_4g071060 | 38.292 | 363 | 184 | 11 | 6 | 345 | 8 | 353 | 5.36e-65 | 210 |
MS.gene24818.t1 | MTR_3g112430 | 39.744 | 312 | 168 | 9 | 51 | 348 | 36 | 341 | 5.47e-65 | 212 |
MS.gene24818.t1 | MTR_4g104370 | 41.472 | 299 | 154 | 9 | 64 | 348 | 52 | 343 | 2.51e-64 | 208 |
MS.gene24818.t1 | MTR_2g090890 | 40.132 | 304 | 170 | 7 | 51 | 348 | 39 | 336 | 1.91e-63 | 205 |
MS.gene24818.t1 | MTR_4g080360 | 37.462 | 331 | 178 | 13 | 34 | 348 | 24 | 341 | 3.46e-63 | 204 |
MS.gene24818.t1 | MTR_2g075830 | 40.728 | 302 | 163 | 10 | 57 | 348 | 45 | 340 | 2.64e-62 | 202 |
MS.gene24818.t1 | MTR_1g023210 | 38.279 | 337 | 177 | 10 | 28 | 345 | 33 | 357 | 1.44e-61 | 201 |
MS.gene24818.t1 | MTR_2g016270 | 37.785 | 307 | 165 | 8 | 51 | 348 | 51 | 340 | 8.04e-60 | 199 |
MS.gene24818.t1 | MTR_2g016180 | 37.419 | 310 | 177 | 8 | 51 | 348 | 51 | 355 | 2.03e-58 | 196 |
MS.gene24818.t1 | MTR_2g015850 | 40.924 | 303 | 151 | 14 | 63 | 349 | 74 | 364 | 7.25e-58 | 191 |
MS.gene24818.t1 | MTR_1g094135 | 35.342 | 365 | 204 | 11 | 7 | 350 | 15 | 368 | 2.08e-57 | 191 |
MS.gene24818.t1 | MTR_7g078600 | 37.908 | 306 | 174 | 9 | 51 | 349 | 42 | 338 | 6.06e-57 | 188 |
MS.gene24818.t1 | MTR_2g083930 | 36.420 | 324 | 179 | 11 | 45 | 349 | 29 | 344 | 7.26e-57 | 188 |
MS.gene24818.t1 | MTR_2g015930 | 31.476 | 359 | 217 | 9 | 6 | 348 | 13 | 358 | 2.85e-55 | 185 |
MS.gene24818.t1 | MTR_7g079230 | 38.689 | 305 | 162 | 11 | 57 | 349 | 45 | 336 | 3.04e-55 | 184 |
MS.gene24818.t1 | MTR_4g065077 | 32.597 | 362 | 222 | 9 | 1 | 348 | 3 | 356 | 1.50e-51 | 175 |
MS.gene24818.t1 | MTR_2g067900 | 35.455 | 330 | 174 | 13 | 44 | 349 | 13 | 327 | 2.13e-47 | 163 |
MS.gene24818.t1 | MTR_4g072790 | 33.429 | 347 | 186 | 9 | 4 | 345 | 11 | 317 | 2.42e-46 | 160 |
MS.gene24818.t1 | MTR_8g086470 | 31.006 | 358 | 217 | 9 | 1 | 348 | 19 | 356 | 5.14e-45 | 158 |
MS.gene24818.t1 | MTR_4g073660 | 33.523 | 352 | 183 | 11 | 4 | 345 | 10 | 320 | 2.47e-44 | 155 |
MS.gene24818.t1 | MTR_4g072340 | 32.955 | 352 | 185 | 10 | 4 | 345 | 11 | 321 | 5.08e-44 | 154 |
MS.gene24818.t1 | MTR_2g067560 | 34.259 | 324 | 163 | 12 | 51 | 341 | 16 | 322 | 2.07e-43 | 160 |
MS.gene24818.t1 | MTR_2g064475 | 32.964 | 361 | 172 | 16 | 41 | 349 | 10 | 352 | 3.04e-41 | 148 |
MS.gene24818.t1 | MTR_2g066980 | 30.435 | 345 | 168 | 14 | 34 | 350 | 20 | 320 | 9.53e-37 | 135 |
MS.gene24818.t1 | MTR_1g023810 | 39.091 | 220 | 121 | 7 | 133 | 346 | 49 | 261 | 3.61e-36 | 132 |
MS.gene24818.t1 | MTR_7g111060 | 32.573 | 307 | 169 | 11 | 66 | 340 | 30 | 330 | 5.76e-35 | 131 |
MS.gene24818.t1 | MTR_7g111050 | 32.609 | 322 | 179 | 15 | 49 | 340 | 14 | 327 | 4.29e-32 | 123 |
MS.gene24818.t1 | MTR_7g078630 | 33.700 | 273 | 141 | 8 | 44 | 305 | 699 | 942 | 1.80e-31 | 125 |
MS.gene24818.t1 | MTR_7g111050 | 30.169 | 295 | 171 | 13 | 48 | 314 | 9 | 296 | 3.66e-20 | 89.7 |
MS.gene24818.t1 | MTR_3g029560 | 29.907 | 214 | 116 | 8 | 145 | 349 | 50 | 238 | 3.61e-19 | 85.9 |
MS.gene24818.t1 | MTR_7g078580 | 42.157 | 102 | 49 | 5 | 252 | 348 | 5 | 101 | 2.43e-18 | 80.5 |
MS.gene24818.t1 | MTR_1g025450 | 32.203 | 177 | 94 | 5 | 133 | 306 | 55 | 208 | 4.21e-18 | 85.9 |
MS.gene24818.t1 | MTR_7g078310 | 36.765 | 136 | 80 | 3 | 92 | 225 | 115 | 246 | 2.70e-16 | 78.2 |
MS.gene24818.t1 | MTR_2g015840 | 31.902 | 163 | 94 | 5 | 38 | 186 | 20 | 179 | 5.26e-16 | 77.4 |
MS.gene24818.t1 | MTR_2g015840 | 40.171 | 117 | 60 | 5 | 238 | 349 | 161 | 272 | 5.91e-16 | 77.4 |
MS.gene24818.t1 | MTR_7g079130 | 43.478 | 92 | 42 | 5 | 263 | 348 | 10 | 97 | 1.33e-15 | 72.0 |
MS.gene24818.t1 | MTR_8g087510 | 35.115 | 131 | 79 | 4 | 175 | 305 | 24 | 148 | 2.75e-15 | 73.6 |
MS.gene24818.t1 | MTR_2g016380 | 32.787 | 122 | 74 | 4 | 231 | 347 | 16 | 134 | 1.51e-14 | 72.8 |
MS.gene24818.t1 | MTR_2g047960 | 46.250 | 80 | 42 | 1 | 142 | 221 | 7 | 85 | 9.07e-14 | 67.0 |
MS.gene24818.t1 | MTR_3g082370 | 26.389 | 216 | 140 | 8 | 138 | 340 | 5 | 214 | 9.74e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24818.t1 | AT3G45310 | 72.881 | 354 | 90 | 2 | 1 | 350 | 7 | 358 | 0.0 | 556 |
MS.gene24818.t1 | AT3G45310 | 72.599 | 354 | 90 | 3 | 1 | 350 | 7 | 357 | 0.0 | 550 |
MS.gene24818.t1 | AT5G60360 | 74.925 | 335 | 80 | 1 | 20 | 350 | 24 | 358 | 0.0 | 543 |
MS.gene24818.t1 | AT5G60360 | 74.627 | 335 | 80 | 2 | 20 | 350 | 24 | 357 | 0.0 | 537 |
MS.gene24818.t1 | AT5G60360 | 74.691 | 324 | 78 | 1 | 20 | 339 | 24 | 347 | 0.0 | 522 |
MS.gene24818.t1 | AT5G43060 | 46.048 | 291 | 141 | 9 | 67 | 348 | 70 | 353 | 1.14e-72 | 233 |
MS.gene24818.t1 | AT3G48340 | 42.667 | 300 | 151 | 8 | 64 | 348 | 50 | 343 | 5.81e-72 | 228 |
MS.gene24818.t1 | AT1G47128 | 38.440 | 359 | 193 | 12 | 5 | 348 | 7 | 352 | 7.13e-72 | 231 |
MS.gene24818.t1 | AT5G50260 | 38.655 | 357 | 184 | 11 | 6 | 348 | 7 | 342 | 7.94e-70 | 223 |
MS.gene24818.t1 | AT4G11310 | 37.222 | 360 | 192 | 9 | 6 | 348 | 10 | 352 | 1.56e-68 | 219 |
MS.gene24818.t1 | AT4G36880 | 42.140 | 299 | 150 | 10 | 67 | 348 | 69 | 361 | 2.39e-68 | 219 |
MS.gene24818.t1 | AT4G35350 | 41.558 | 308 | 164 | 9 | 51 | 348 | 51 | 352 | 2.74e-68 | 218 |
MS.gene24818.t1 | AT3G54940 | 38.333 | 360 | 191 | 9 | 1 | 340 | 6 | 354 | 4.70e-68 | 218 |
MS.gene24818.t1 | AT1G06260 | 39.031 | 351 | 185 | 10 | 7 | 348 | 12 | 342 | 8.41e-68 | 217 |
MS.gene24818.t1 | AT3G19400 | 42.857 | 301 | 153 | 10 | 60 | 347 | 53 | 347 | 1.21e-67 | 217 |
MS.gene24818.t1 | AT4G11320 | 38.838 | 327 | 170 | 7 | 40 | 348 | 45 | 359 | 1.67e-67 | 217 |
MS.gene24818.t1 | AT4G11320 | 38.838 | 327 | 170 | 7 | 40 | 348 | 45 | 359 | 1.67e-67 | 217 |
MS.gene24818.t1 | AT4G23520 | 40.323 | 310 | 166 | 10 | 51 | 348 | 47 | 349 | 2.87e-67 | 216 |
MS.gene24818.t1 | AT1G20850 | 40.000 | 310 | 167 | 9 | 51 | 348 | 51 | 353 | 1.53e-66 | 214 |
MS.gene24818.t1 | AT5G45890 | 40.367 | 327 | 167 | 11 | 40 | 349 | 31 | 346 | 7.51e-66 | 212 |
MS.gene24818.t1 | AT1G09850 | 39.286 | 308 | 171 | 8 | 51 | 348 | 32 | 333 | 2.45e-64 | 211 |
MS.gene24818.t1 | AT3G19390 | 42.000 | 300 | 157 | 11 | 60 | 348 | 52 | 345 | 8.44e-64 | 209 |
MS.gene24818.t1 | AT3G48350 | 38.187 | 364 | 181 | 14 | 4 | 348 | 5 | 343 | 2.58e-63 | 206 |
MS.gene24818.t1 | AT1G29080 | 41.234 | 308 | 158 | 11 | 57 | 348 | 45 | 345 | 2.02e-62 | 203 |
MS.gene24818.t1 | AT2G21430 | 37.059 | 340 | 187 | 8 | 28 | 345 | 20 | 354 | 1.39e-60 | 199 |
MS.gene24818.t1 | AT1G29090 | 37.396 | 361 | 182 | 15 | 5 | 348 | 21 | 354 | 3.71e-60 | 197 |
MS.gene24818.t1 | AT4G39090 | 38.769 | 325 | 170 | 9 | 40 | 345 | 43 | 357 | 1.40e-59 | 196 |
MS.gene24818.t1 | AT2G34080 | 39.498 | 319 | 165 | 14 | 46 | 348 | 38 | 344 | 8.78e-59 | 193 |
MS.gene24818.t1 | AT3G43960 | 40.594 | 303 | 162 | 11 | 59 | 348 | 49 | 346 | 1.48e-58 | 194 |
MS.gene24818.t1 | AT4G16190 | 36.765 | 340 | 185 | 11 | 26 | 345 | 34 | 363 | 1.35e-55 | 186 |
MS.gene24818.t1 | AT3G49340 | 37.500 | 312 | 171 | 11 | 53 | 348 | 37 | 340 | 2.09e-55 | 184 |
MS.gene24818.t1 | AT2G27420 | 37.700 | 313 | 168 | 12 | 57 | 348 | 41 | 347 | 6.08e-55 | 184 |
MS.gene24818.t1 | AT1G29110 | 37.061 | 313 | 161 | 11 | 53 | 348 | 40 | 333 | 1.58e-52 | 177 |
MS.gene24818.t1 | AT4G35350 | 43.096 | 239 | 127 | 7 | 51 | 283 | 51 | 286 | 3.79e-50 | 169 |
MS.gene24818.t1 | AT3G54940 | 37.589 | 282 | 157 | 5 | 1 | 271 | 6 | 279 | 1.91e-48 | 164 |
MS.gene24818.t1 | AT3G19400 | 42.358 | 229 | 121 | 7 | 60 | 279 | 53 | 279 | 5.35e-46 | 159 |
MS.gene24818.t1 | AT3G48350 | 36.577 | 298 | 154 | 10 | 4 | 287 | 5 | 281 | 5.52e-43 | 151 |
MS.gene24818.t1 | AT1G02305 | 33.677 | 291 | 157 | 11 | 80 | 340 | 49 | 333 | 3.79e-34 | 129 |
MS.gene24818.t1 | AT1G02300 | 37.089 | 213 | 102 | 8 | 152 | 340 | 146 | 350 | 5.25e-31 | 121 |
MS.gene24818.t1 | AT4G01610 | 31.629 | 313 | 174 | 13 | 59 | 340 | 27 | 330 | 1.06e-30 | 120 |
MS.gene24818.t1 | AT4G01610 | 30.990 | 313 | 176 | 13 | 59 | 340 | 27 | 330 | 1.04e-28 | 114 |
Find 87 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGGATCATGCTGGACATTC+AGG | 0.322819 | 8.1:-6923808 | MS.gene24818:intron |
CTGCAGCACAACTGGAGCTT+TGG | 0.347290 | 8.1:-6923266 | MS.gene24818:intron |
TATCCCTACACTGGACAAAA+TGG | 0.356510 | 8.1:-6923082 | MS.gene24818:CDS |
GCTCAATCCGGCGGCGGCGG+TGG | 0.358129 | 8.1:+6924960 | None:intergenic |
ACTGTCATCTGCAGCACAAC+TGG | 0.364159 | 8.1:-6923274 | MS.gene24818:intron |
TGGCTACTTCAAAATGGAAA+TGG | 0.373295 | 8.1:-6922265 | MS.gene24818:CDS |
TGACCATGGCTACTTCAAAA+TGG | 0.374145 | 8.1:-6922271 | MS.gene24818:CDS |
GTTATTGTATGCAGAAAGAT+TGG | 0.377542 | 8.1:-6923874 | MS.gene24818:intron |
AGGTATAGTCAGTGAAGTTA+AGG | 0.383706 | 8.1:-6923843 | MS.gene24818:CDS |
CATGGAAAAGCAGCTTCTTC+AGG | 0.383850 | 8.1:-6924902 | MS.gene24818:CDS |
GCTGTTCTTGCTGTTGGGTA+TGG | 0.386199 | 8.1:-6922351 | MS.gene24818:CDS |
TGCGTGGCCACCGCCGCCGC+CGG | 0.394631 | 8.1:-6924967 | MS.gene24818:CDS |
GGCTACTTCAAAATGGAAAT+GGG | 0.395439 | 8.1:-6922264 | MS.gene24818:CDS |
AAACTCATGGGGAGGTGAAT+GGG | 0.395979 | 8.1:-6922295 | MS.gene24818:CDS |
TTTAATGTATTCAAAGGCTT+GGG | 0.400464 | 8.1:+6923135 | None:intergenic |
AATCATGCTGTTCTTGCTGT+TGG | 0.406771 | 8.1:-6922357 | MS.gene24818:CDS |
AACGTTGCTGTTCAAGTCCT+TGG | 0.409619 | 8.1:-6923037 | MS.gene24818:CDS |
TTCAATAACTTTGGCTGCAA+TGG | 0.411469 | 8.1:-6923169 | MS.gene24818:CDS |
ATTTAATGTATTCAAAGGCT+TGG | 0.415754 | 8.1:+6923134 | None:intergenic |
TTGAAGATGGTGTACCATAT+TGG | 0.416176 | 8.1:-6922326 | MS.gene24818:CDS |
TCCCGTCAGTGTGGCATTTG+AGG | 0.418243 | 8.1:-6922626 | MS.gene24818:CDS |
ATCATGCTGTTCTTGCTGTT+GGG | 0.423797 | 8.1:-6922356 | MS.gene24818:CDS |
TCCACGACTCCAATCCTATT+CGG | 0.426027 | 8.1:-6924936 | MS.gene24818:CDS |
CGTACCATTTAGGCCACAAC+AGG | 0.448204 | 8.1:+6921944 | None:intergenic |
AATAACTTTGGCTGCAATGG+TGG | 0.457933 | 8.1:-6923166 | MS.gene24818:CDS |
CAGAAAGATTGGAGGAAAGA+AGG | 0.463829 | 8.1:-6923863 | MS.gene24818:CDS |
AAAACTCATGGGGAGGTGAA+TGG | 0.463951 | 8.1:-6922296 | MS.gene24818:CDS |
ACCTCAAATGCCACACTGAC+GGG | 0.464487 | 8.1:+6922625 | None:intergenic |
CAGCAGCTAGTGGACTGTGC+TGG | 0.465005 | 8.1:-6923196 | MS.gene24818:CDS |
ATGTCGGAGACCATCCGAAT+AGG | 0.466748 | 8.1:+6924922 | None:intergenic |
TCAGCTTACGCACAGGCCTT+CGG | 0.468118 | 8.1:-6923241 | MS.gene24818:CDS |
GCTGGTGCTTTCAATAACTT+TGG | 0.475033 | 8.1:-6923178 | MS.gene24818:CDS |
GAAGCTCAATCCGGCGGCGG+CGG | 0.484936 | 8.1:+6924957 | None:intergenic |
AATTGTTCTGCTACTCTCAA+GGG | 0.485400 | 8.1:-6924565 | MS.gene24818:CDS |
GTCAGTGAAGTTAAGGATCA+AGG | 0.494471 | 8.1:-6923836 | MS.gene24818:CDS |
TCTTTCTGAGCAGCAGCTAG+TGG | 0.496747 | 8.1:-6923206 | MS.gene24818:CDS |
ATTGTATTTAATGTATTCAA+AGG | 0.503015 | 8.1:+6923129 | None:intergenic |
TTGTTCATCCTATCCTGTTG+TGG | 0.503980 | 8.1:-6921957 | MS.gene24818:CDS |
GCTCGCTTTGCTAACAGATA+CGG | 0.506701 | 8.1:-6924847 | MS.gene24818:CDS |
TCTACTAATAAGAAACGTCT+TGG | 0.509184 | 8.1:-6924751 | MS.gene24818:CDS |
AAGGCCACTGCGGATCATGC+TGG | 0.516867 | 8.1:-6923817 | MS.gene24818:CDS |
GGAGACCATCCGAATAGGAT+TGG | 0.519715 | 8.1:+6924927 | None:intergenic |
GACTTCAGATTATACAAGAA+AGG | 0.522674 | 8.1:-6922595 | MS.gene24818:CDS |
GAACAACATCGGTAATCCTA+TGG | 0.528082 | 8.1:+6924539 | None:intergenic |
TGTTGCTGACATACCTCGGC+AGG | 0.528653 | 8.1:+6924514 | None:intergenic |
AAATTGTTCTGCTACTCTCA+AGG | 0.532831 | 8.1:-6924566 | MS.gene24818:CDS |
CACCTCAAATGCCACACTGA+CGG | 0.534034 | 8.1:+6922624 | None:intergenic |
ATGTATTCAAAGGCTTGGGA+TGG | 0.539444 | 8.1:+6923139 | None:intergenic |
GGAGTCGTGGAAGCTCAATC+CGG | 0.546963 | 8.1:+6924948 | None:intergenic |
CTACTCTCAAGGGGAACCAT+AGG | 0.552146 | 8.1:-6924555 | MS.gene24818:CDS |
TATTCGGATGGTCTCCGACA+TGG | 0.552839 | 8.1:-6924920 | MS.gene24818:CDS |
AAACGTCTTGGTTACACTCT+CGG | 0.554881 | 8.1:-6924739 | MS.gene24818:CDS |
CGATGTTGTTCTTCCTGCCG+AGG | 0.557356 | 8.1:-6924527 | MS.gene24818:intron |
CATTTAGGCCACAACAGGAT+AGG | 0.558859 | 8.1:+6921949 | None:intergenic |
GTGGAAGCTCAATCCGGCGG+CGG | 0.560054 | 8.1:+6924954 | None:intergenic |
TCCGAATAGGATTGGAGTCG+TGG | 0.561061 | 8.1:+6924935 | None:intergenic |
AACTCATGGGGAGGTGAATG+GGG | 0.564340 | 8.1:-6922294 | MS.gene24818:CDS |
ATTGTATGCAGAAAGATTGG+AGG | 0.565149 | 8.1:-6923871 | MS.gene24818:intron |
AAGCAGCTTCTTCAGGTCAT+CGG | 0.576623 | 8.1:-6924895 | MS.gene24818:CDS |
TCTACGCTTCATTTCATCAA+CGG | 0.582909 | 8.1:+6924810 | None:intergenic |
AAGAGAGATATTCTTTCCGA+AGG | 0.583318 | 8.1:+6923225 | None:intergenic |
CCACGCAGAAGAAAACGATA+AGG | 0.585441 | 8.1:+6924983 | None:intergenic |
CAATGGTGGCCTTGAGACAG+AGG | 0.588490 | 8.1:-6923110 | MS.gene24818:CDS |
TTTGAATACATTAAATACAA+TGG | 0.591214 | 8.1:-6923127 | MS.gene24818:CDS |
TTTGGAGTCAGCTTACGCAC+AGG | 0.591422 | 8.1:-6923248 | MS.gene24818:CDS |
GATATGCTTCCTCTGTCTCA+AGG | 0.591795 | 8.1:+6923101 | None:intergenic |
ATAACTTTGGCTGCAATGGT+GGG | 0.592479 | 8.1:-6923165 | MS.gene24818:CDS |
GTTGGGTATGGAATTGAAGA+TGG | 0.599047 | 8.1:-6922339 | MS.gene24818:CDS |
GAATACATTAAATACAATGG+TGG | 0.602840 | 8.1:-6923124 | MS.gene24818:CDS |
GAGGAAGCATATCCCTACAC+TGG | 0.603850 | 8.1:-6923091 | MS.gene24818:CDS |
AACTTGTGGCAACACACCCA+TGG | 0.613991 | 8.1:-6922557 | MS.gene24818:intron |
GGAGGTGAATGGGGTGACCA+TGG | 0.614058 | 8.1:-6922285 | MS.gene24818:CDS |
CGACTCCAATCCTATTCGGA+TGG | 0.614891 | 8.1:-6924932 | MS.gene24818:CDS |
ATTGTTCTGCTACTCTCAAG+GGG | 0.626423 | 8.1:-6924564 | MS.gene24818:CDS |
TGGCTCTGTCAATATCACCT+TGG | 0.626940 | 8.1:-6923017 | MS.gene24818:intron |
GCTACTTCAAAATGGAAATG+GGG | 0.626994 | 8.1:-6922263 | MS.gene24818:CDS |
CGTCAGTGTGGCATTTGAGG+TGG | 0.632809 | 8.1:-6922623 | MS.gene24818:CDS |
GTCGTGGAAGCTCAATCCGG+CGG | 0.638778 | 8.1:+6924951 | None:intergenic |
GTTTACACTAGTACAACTTG+TGG | 0.641036 | 8.1:-6922571 | MS.gene24818:CDS |
GAGTTCAGAAGTCATAGACT+TGG | 0.649401 | 8.1:-6924598 | MS.gene24818:CDS |
AGCGAGCGAAAGAGACAGCG+TGG | 0.659831 | 8.1:+6924863 | None:intergenic |
AGGTGATATTGACAGAGCCA+AGG | 0.667399 | 8.1:+6923020 | None:intergenic |
CTCGGCAGGAAGAACAACAT+CGG | 0.700091 | 8.1:+6924528 | None:intergenic |
ATGTCCAGCATGATCCGCAG+TGG | 0.707970 | 8.1:+6923813 | None:intergenic |
GAAATGGGGAAGAATATGTG+CGG | 0.730027 | 8.1:-6922249 | MS.gene24818:intron |
GTTAAGGATCAAGGCCACTG+CGG | 0.773436 | 8.1:-6923827 | MS.gene24818:CDS |
GAGAGTGAAAGATGGCACAG+TGG | 0.782503 | 8.1:-6925011 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAATTTAACAAATAGTTT+AGG | - | chr8.1:6924498-6924517 | MS.gene24818:intron | 10.0% |
!!! | TTTGTTTTTAATTTTGTTTT+GGG | - | chr8.1:6924257-6924276 | MS.gene24818:intron | 10.0% |
!!! | TTTTGTTTTTAATTTTGTTT+TGG | - | chr8.1:6924256-6924275 | MS.gene24818:intron | 10.0% |
!! | AAAAAGAAAATTAAAGTCAA+AGG | + | chr8.1:6922266-6922285 | None:intergenic | 15.0% |
!! | ATTGTATTTAATGTATTCAA+AGG | + | chr8.1:6923826-6923845 | None:intergenic | 15.0% |
!! | TTTGAATACATTAAATACAA+TGG | - | chr8.1:6923825-6923844 | MS.gene24818:CDS | 15.0% |
!!! | AAATTTTAAAGTATGAGTTT+TGG | - | chr8.1:6923219-6923238 | MS.gene24818:CDS | 15.0% |
!!! | AATCATTTTTGTTTAATTTC+AGG | - | chr8.1:6924963-6924982 | MS.gene24818:CDS | 15.0% |
!!! | ATTTTGATGATAAATGATTA+TGG | - | chr8.1:6922300-6922319 | MS.gene24818:CDS | 15.0% |
!! | ATAGCTTATAGTAGTTTATA+TGG | - | chr8.1:6922717-6922736 | MS.gene24818:intron | 20.0% |
!! | CTGAGTTTATATTATTTAGT+TGG | - | chr8.1:6924062-6924081 | MS.gene24818:intron | 20.0% |
!! | CTTTCATTCCATAAAATTAT+TGG | + | chr8.1:6923436-6923455 | None:intergenic | 20.0% |
!! | TACAAATAAATTAGGACTTA+GGG | + | chr8.1:6923563-6923582 | None:intergenic | 20.0% |
!! | TTAAATTGTTTATTCAAACG+AGG | - | chr8.1:6922800-6922819 | MS.gene24818:intron | 20.0% |
!! | TTACAAATAAATTAGGACTT+AGG | + | chr8.1:6923564-6923583 | None:intergenic | 20.0% |
!! | TTCCATTCCATTAAAATTAT+TGG | + | chr8.1:6923480-6923499 | None:intergenic | 20.0% |
!!! | AAACTGTCCAATAATTTTAA+TGG | - | chr8.1:6923470-6923489 | MS.gene24818:intron | 20.0% |
!!! | TAAACTGTCCAATAATTTTA+TGG | - | chr8.1:6923425-6923444 | MS.gene24818:intron | 20.0% |
!!! | TAAGTTATTTCTATAACTGA+AGG | + | chr8.1:6922764-6922783 | None:intergenic | 20.0% |
!!! | TACTATAAGCTATTTTCATA+AGG | + | chr8.1:6922710-6922729 | None:intergenic | 20.0% |
! | AATAAGTAAATTGCATTCTG+AGG | - | chr8.1:6923028-6923047 | MS.gene24818:CDS | 25.0% |
! | AATCAAACATATGATTACCA+AGG | + | chr8.1:6923955-6923974 | None:intergenic | 25.0% |
! | ACAAATAAATTAGGACTTAG+GGG | + | chr8.1:6923562-6923581 | None:intergenic | 25.0% |
! | ACTATGTTAATTTCTTGTGT+TGG | - | chr8.1:6924028-6924047 | MS.gene24818:intron | 25.0% |
! | ATTCAAATTTCGTTAACTTC+TGG | + | chr8.1:6924558-6924577 | None:intergenic | 25.0% |
! | ATTTAATGTATTCAAAGGCT+TGG | + | chr8.1:6923821-6923840 | None:intergenic | 25.0% |
! | CAAAAATGATTAGCAAAAAC+AGG | + | chr8.1:6924954-6924973 | None:intergenic | 25.0% |
! | CACTTGGTTACAAATAAATT+AGG | + | chr8.1:6923571-6923590 | None:intergenic | 25.0% |
! | GAAATTAATGCTAACATACA+CGG | + | chr8.1:6922921-6922940 | None:intergenic | 25.0% |
! | GAATACATTAAATACAATGG+TGG | - | chr8.1:6923828-6923847 | MS.gene24818:CDS | 25.0% |
! | TAACGAAATTTGAATTTGTC+TGG | - | chr8.1:6924563-6924582 | MS.gene24818:CDS | 25.0% |
! | TAGTTAACAAATACATCATG+CGG | + | chr8.1:6923987-6924006 | None:intergenic | 25.0% |
! | TCACAAACAAATATGAACAA+CGG | + | chr8.1:6923008-6923027 | None:intergenic | 25.0% |
! | TGACAGTCTAATATTAATTG+TGG | + | chr8.1:6922978-6922997 | None:intergenic | 25.0% |
! | TTAACAAAAGAGTTAAGATC+CGG | + | chr8.1:6924737-6924756 | None:intergenic | 25.0% |
! | TTCAAATTTCGTTAACTTCT+GGG | + | chr8.1:6924557-6924576 | None:intergenic | 25.0% |
! | TTGAATTAAACACTAGATTG+AGG | + | chr8.1:6924451-6924470 | None:intergenic | 25.0% |
! | TTTAATGTATTCAAAGGCTT+GGG | + | chr8.1:6923820-6923839 | None:intergenic | 25.0% |
! | TTTCTGCATACAATAACAAA+AGG | + | chr8.1:6923075-6923094 | None:intergenic | 25.0% |
!! | CTGTTATTCCATTTTCTTAT+CGG | - | chr8.1:6922886-6922905 | MS.gene24818:intron | 25.0% |
!! | TAATCATTTAATCTGAAGTG+CGG | + | chr8.1:6922838-6922857 | None:intergenic | 25.0% |
!! | TCTTGATGATTAAATAACTG+TGG | - | chr8.1:6924792-6924811 | MS.gene24818:CDS | 25.0% |
!! | TGTTATTCCATTTTCTTATC+GGG | - | chr8.1:6922887-6922906 | MS.gene24818:intron | 25.0% |
!! | TTTTCAGATGTAAATTTGCA+GGG | + | chr8.1:6923897-6923916 | None:intergenic | 25.0% |
!!! | AATAGTTTAGGTTGAATCTA+TGG | - | chr8.1:6924510-6924529 | MS.gene24818:intron | 25.0% |
!!! | GTCCAATAATTTTAATGGAA+TGG | - | chr8.1:6923475-6923494 | MS.gene24818:intron | 25.0% |
!!! | TTAATTTTGTTTTGGGTGTA+GGG | - | chr8.1:6924264-6924283 | MS.gene24818:intron | 25.0% |
!!! | TTTAATTTTGTTTTGGGTGT+AGG | - | chr8.1:6924263-6924282 | MS.gene24818:intron | 25.0% |
AAAGTGCAACTTCATACAAA+GGG | + | chr8.1:6923638-6923657 | None:intergenic | 30.0% | |
AAATTCAGTTGAAGAATGAC+AGG | + | chr8.1:6922943-6922962 | None:intergenic | 30.0% | |
AACTATAGCATAGACACTTA+TGG | + | chr8.1:6922610-6922629 | None:intergenic | 30.0% | |
AATTAAACACTAGATTGAGG+AGG | + | chr8.1:6924448-6924467 | None:intergenic | 30.0% | |
ATCTAATATAGATGAAGTCG+AGG | + | chr8.1:6924229-6924248 | None:intergenic | 30.0% | |
CGATAAGAAAATGGAATAAC+AGG | + | chr8.1:6922888-6922907 | None:intergenic | 30.0% | |
GACTTCAGATTATACAAGAA+AGG | - | chr8.1:6924357-6924376 | MS.gene24818:intron | 30.0% | |
GTTATTGTATGCAGAAAGAT+TGG | - | chr8.1:6923078-6923097 | MS.gene24818:CDS | 30.0% | |
TAAAGTGCAACTTCATACAA+AGG | + | chr8.1:6923639-6923658 | None:intergenic | 30.0% | |
TAACAAAAGAGTTAAGATCC+GGG | + | chr8.1:6924736-6924755 | None:intergenic | 30.0% | |
TAAGTAGTAATCAAGTGTGT+TGG | - | chr8.1:6922548-6922567 | MS.gene24818:intron | 30.0% | |
TCAAATTTCGTTAACTTCTG+GGG | + | chr8.1:6924556-6924575 | None:intergenic | 30.0% | |
TCCTACATAACACAATCTAA+AGG | + | chr8.1:6924824-6924843 | None:intergenic | 30.0% | |
TCTACTAATAAGAAACGTCT+TGG | - | chr8.1:6922201-6922220 | MS.gene24818:intron | 30.0% | |
TGATTAAATAACTGTGGCAA+AGG | - | chr8.1:6924798-6924817 | MS.gene24818:CDS | 30.0% | |
TGATTGCTCAAAGAAAAAGT+TGG | + | chr8.1:6923290-6923309 | None:intergenic | 30.0% | |
TTGGCTCATTAAAAACTCAT+GGG | - | chr8.1:6924645-6924664 | MS.gene24818:intron | 30.0% | |
TTTGCGTCTTTGTGAAAATA+TGG | - | chr8.1:6924867-6924886 | MS.gene24818:CDS | 30.0% | |
! | AAAGTTGGCTTATAAACCAA+AGG | + | chr8.1:6923275-6923294 | None:intergenic | 30.0% |
! | AAGGCATTAATTTGAGAAAG+TGG | + | chr8.1:6923605-6923624 | None:intergenic | 30.0% |
! | ATATTTTCACAAAGACGCAA+AGG | + | chr8.1:6924868-6924887 | None:intergenic | 30.0% |
! | ATTGGCTCATTAAAAACTCA+TGG | - | chr8.1:6924644-6924663 | MS.gene24818:intron | 30.0% |
! | GAGTTTTTAATGAGCCAATA+TGG | + | chr8.1:6924643-6924662 | None:intergenic | 30.0% |
! | GTTTTCAGATGTAAATTTGC+AGG | + | chr8.1:6923898-6923917 | None:intergenic | 30.0% |
AAATTGTTCTGCTACTCTCA+AGG | - | chr8.1:6922386-6922405 | MS.gene24818:intron | 35.0% | |
AAGAGAGATATTCTTTCCGA+AGG | + | chr8.1:6923730-6923749 | None:intergenic | 35.0% | |
AATTGTTCTGCTACTCTCAA+GGG | - | chr8.1:6922387-6922406 | MS.gene24818:intron | 35.0% | |
AGGTATAGTCAGTGAAGTTA+AGG | - | chr8.1:6923109-6923128 | MS.gene24818:CDS | 35.0% | |
ATCAAGATCCAAGACAGAAA+AGG | + | chr8.1:6924779-6924798 | None:intergenic | 35.0% | |
ATTCACATTATGTGCTCGTA+TGG | - | chr8.1:6924143-6924162 | MS.gene24818:intron | 35.0% | |
ATTGTATGCAGAAAGATTGG+AGG | - | chr8.1:6923081-6923100 | MS.gene24818:CDS | 35.0% | |
CAAGACAGAAAAGGACAATT+GGG | + | chr8.1:6924770-6924789 | None:intergenic | 35.0% | |
GAAATTTGAATTTGTCTGGC+AGG | - | chr8.1:6924567-6924586 | MS.gene24818:CDS | 35.0% | |
GCCTTTAGATTGTGTTATGT+AGG | - | chr8.1:6924820-6924839 | MS.gene24818:CDS | 35.0% | |
GCTACTTCAAAATGGAAATG+GGG | - | chr8.1:6924689-6924708 | MS.gene24818:intron | 35.0% | |
GGCTACTTCAAAATGGAAAT+GGG | - | chr8.1:6924688-6924707 | MS.gene24818:intron | 35.0% | |
GGCTTATAAACCAAAGGATA+GGG | + | chr8.1:6923269-6923288 | None:intergenic | 35.0% | |
GTTTACACTAGTACAACTTG+TGG | - | chr8.1:6924381-6924400 | MS.gene24818:intron | 35.0% | |
TACAAAGGGTTGAATCTCAA+AGG | + | chr8.1:6923624-6923643 | None:intergenic | 35.0% | |
TATAGCATAGACACTTATGG+TGG | + | chr8.1:6922607-6922626 | None:intergenic | 35.0% | |
TCTACGCTTCATTTCATCAA+CGG | + | chr8.1:6922145-6922164 | None:intergenic | 35.0% | |
TGGCTACTTCAAAATGGAAA+TGG | - | chr8.1:6924687-6924706 | MS.gene24818:intron | 35.0% | |
TGGCTCATTAAAAACTCATG+GGG | - | chr8.1:6924646-6924665 | MS.gene24818:intron | 35.0% | |
TGGCTTATAAACCAAAGGAT+AGG | + | chr8.1:6923270-6923289 | None:intergenic | 35.0% | |
TGTCGTATTATGAGCTAGTT+TGG | - | chr8.1:6922489-6922508 | MS.gene24818:intron | 35.0% | |
TTCAATAACTTTGGCTGCAA+TGG | - | chr8.1:6923783-6923802 | MS.gene24818:intron | 35.0% | |
TTGAAGATGGTGTACCATAT+TGG | - | chr8.1:6924626-6924645 | MS.gene24818:intron | 35.0% | |
! | AGTGGTGAAATTTTTGCACT+TGG | + | chr8.1:6923587-6923606 | None:intergenic | 35.0% |
! | CAGTGTCATTGTTACAGATA+TGG | + | chr8.1:6923662-6923681 | None:intergenic | 35.0% |
! | GAGAGTTTTTGCAAGAACTT+AGG | - | chr8.1:6922633-6922652 | MS.gene24818:CDS | 35.0% |
!! | AATGAGCATTGTGCTCTTTT+TGG | + | chr8.1:6924100-6924119 | None:intergenic | 35.0% |
!! | AGATTTTGCTGATTGGACTT+GGG | - | chr8.1:6922329-6922348 | MS.gene24818:CDS | 35.0% |
!!! | ACTTAAGTGTTGTTTTCGTC+AGG | + | chr8.1:6922533-6922552 | None:intergenic | 35.0% |
!!! | TTTCCATTTTGAAGTAGCCA+TGG | + | chr8.1:6924687-6924706 | None:intergenic | 35.0% |
AAACGTCTTGGTTACACTCT+CGG | - | chr8.1:6922213-6922232 | MS.gene24818:intron | 40.0% | |
AATAACTTTGGCTGCAATGG+TGG | - | chr8.1:6923786-6923805 | MS.gene24818:intron | 40.0% | |
AGGGTTTCAAGAGGTTAAGA+TGG | + | chr8.1:6923250-6923269 | None:intergenic | 40.0% | |
ATAACTTTGGCTGCAATGGT+GGG | - | chr8.1:6923787-6923806 | MS.gene24818:intron | 40.0% | |
ATGTATTCAAAGGCTTGGGA+TGG | + | chr8.1:6923816-6923835 | None:intergenic | 40.0% | |
ATTGTTCTGCTACTCTCAAG+GGG | - | chr8.1:6922388-6922407 | MS.gene24818:intron | 40.0% | |
CAGAAAGATTGGAGGAAAGA+AGG | - | chr8.1:6923089-6923108 | MS.gene24818:CDS | 40.0% | |
CCAAGACAGAAAAGGACAAT+TGG | + | chr8.1:6924771-6924790 | None:intergenic | 40.0% | |
CTCATTAAAAACTCATGGGG+AGG | - | chr8.1:6924649-6924668 | MS.gene24818:intron | 40.0% | |
GAAATGGGGAAGAATATGTG+CGG | - | chr8.1:6924703-6924722 | MS.gene24818:intron | 40.0% | |
GAACAACATCGGTAATCCTA+TGG | + | chr8.1:6922416-6922435 | None:intergenic | 40.0% | |
GAGTTCAGAAGTCATAGACT+TGG | - | chr8.1:6922354-6922373 | MS.gene24818:CDS | 40.0% | |
GCTGGTGCTTTCAATAACTT+TGG | - | chr8.1:6923774-6923793 | MS.gene24818:intron | 40.0% | |
GTCAGTGAAGTTAAGGATCA+AGG | - | chr8.1:6923116-6923135 | MS.gene24818:CDS | 40.0% | |
GTTGGGTATGGAATTGAAGA+TGG | - | chr8.1:6924613-6924632 | MS.gene24818:CDS | 40.0% | |
TATCCCTACACTGGACAAAA+TGG | - | chr8.1:6923870-6923889 | MS.gene24818:intron | 40.0% | |
TATTGCAGAACACTCACCAT+GGG | + | chr8.1:6924414-6924433 | None:intergenic | 40.0% | |
TGACCATGGCTACTTCAAAA+TGG | - | chr8.1:6924681-6924700 | MS.gene24818:intron | 40.0% | |
TTGTTCATCCTATCCTGTTG+TGG | - | chr8.1:6924995-6925014 | MS.gene24818:CDS | 40.0% | |
! | AACTAACAACAGCTCTAGCA+AGG | + | chr8.1:6924893-6924912 | None:intergenic | 40.0% |
! | AATCATGCTGTTCTTGCTGT+TGG | - | chr8.1:6924595-6924614 | MS.gene24818:CDS | 40.0% |
! | CCAATTGTCCTTTTCTGTCT+TGG | - | chr8.1:6924768-6924787 | MS.gene24818:CDS | 40.0% |
! | GAGTTGCAGATTTTGCTGAT+TGG | - | chr8.1:6922322-6922341 | MS.gene24818:CDS | 40.0% |
! | TTCCATTTTCTTATCGGGTC+TGG | - | chr8.1:6922892-6922911 | MS.gene24818:intron | 40.0% |
!! | ATCATGCTGTTCTTGCTGTT+GGG | - | chr8.1:6924596-6924615 | MS.gene24818:CDS | 40.0% |
!! | CAGATTTTGCTGATTGGACT+TGG | - | chr8.1:6922328-6922347 | MS.gene24818:CDS | 40.0% |
!!! | AAGAAGCTGCTTTTCCATGT+CGG | + | chr8.1:6922049-6922068 | None:intergenic | 40.0% |
AAAACTCATGGGGAGGTGAA+TGG | - | chr8.1:6924656-6924675 | MS.gene24818:intron | 45.0% | |
AAACTCATGGGGAGGTGAAT+GGG | - | chr8.1:6924657-6924676 | MS.gene24818:intron | 45.0% | |
AAGCAGCTTCTTCAGGTCAT+CGG | - | chr8.1:6922057-6922076 | MS.gene24818:intron | 45.0% | |
AATATGTGCGGTAAGGATCC+CGG | - | chr8.1:6924715-6924734 | MS.gene24818:intron | 45.0% | |
AGGTGATATTGACAGAGCCA+AGG | + | chr8.1:6923935-6923954 | None:intergenic | 45.0% | |
CACCAGACCCGATAAGAAAA+TGG | + | chr8.1:6922897-6922916 | None:intergenic | 45.0% | |
CAGAAAAGGACAATTGGGTG+AGG | + | chr8.1:6924765-6924784 | None:intergenic | 45.0% | |
CAGTTGTTGCTGACATACCT+CGG | + | chr8.1:6922445-6922464 | None:intergenic | 45.0% | |
CATGGAAAAGCAGCTTCTTC+AGG | - | chr8.1:6922050-6922069 | MS.gene24818:intron | 45.0% | |
CCAAAGGATAGGGTTTCAAG+AGG | + | chr8.1:6923259-6923278 | None:intergenic | 45.0% | |
CCACGCAGAAGAAAACGATA+AGG | + | chr8.1:6921972-6921991 | None:intergenic | 45.0% | |
CCTCTTGAAACCCTATCCTT+TGG | - | chr8.1:6923256-6923275 | MS.gene24818:CDS | 45.0% | |
CTATTGCAGAACACTCACCA+TGG | + | chr8.1:6924415-6924434 | None:intergenic | 45.0% | |
GATATGCTTCCTCTGTCTCA+AGG | + | chr8.1:6923854-6923873 | None:intergenic | 45.0% | |
GCTCGCTTTGCTAACAGATA+CGG | - | chr8.1:6922105-6922124 | MS.gene24818:intron | 45.0% | |
GTAGTTGCTCTGTAGAGACA+TGG | - | chr8.1:6924184-6924203 | MS.gene24818:intron | 45.0% | |
GTCTCTACAGAGCAACTACA+AGG | + | chr8.1:6924183-6924202 | None:intergenic | 45.0% | |
TCCACGACTCCAATCCTATT+CGG | - | chr8.1:6922016-6922035 | MS.gene24818:intron | 45.0% | |
! | AACGTTGCTGTTCAAGTCCT+TGG | - | chr8.1:6923915-6923934 | MS.gene24818:intron | 45.0% |
! | CCTTATCGTTTTCTTCTGCG+TGG | - | chr8.1:6921969-6921988 | MS.gene24818:CDS | 45.0% |
! | CTGAAGTGCGGATGCTATTT+AGG | + | chr8.1:6922826-6922845 | None:intergenic | 45.0% |
! | CTGACTGTGAGGAGCTATTT+TGG | - | chr8.1:6923174-6923193 | MS.gene24818:CDS | 45.0% |
! | GCATAGACACTTATGGTGGA+AGG | + | chr8.1:6922603-6922622 | None:intergenic | 45.0% |
! | GGACCATTTTGTCCAGTGTA+GGG | + | chr8.1:6923876-6923895 | None:intergenic | 45.0% |
! | TCTGGGGAAGCATATCATGA+TGG | + | chr8.1:6924540-6924559 | None:intergenic | 45.0% |
! | TCTGGTGTCTAAAACCGAGA+TGG | + | chr8.1:6922576-6922595 | None:intergenic | 45.0% |
! | TGGCTCTGTCAATATCACCT+TGG | - | chr8.1:6923935-6923954 | MS.gene24818:intron | 45.0% |
!! | TTTTGCTGATTGGACTTGGG+AGG | - | chr8.1:6922332-6922351 | MS.gene24818:CDS | 45.0% |
AACTCATGGGGAGGTGAATG+GGG | - | chr8.1:6924658-6924677 | MS.gene24818:intron | 50.0% | |
AACTTGTGGCAACACACCCA+TGG | - | chr8.1:6924395-6924414 | MS.gene24818:intron | 50.0% | |
ACCTCAAATGCCACACTGAC+GGG | + | chr8.1:6924330-6924349 | None:intergenic | 50.0% | |
ACTGTCATCTGCAGCACAAC+TGG | - | chr8.1:6923678-6923697 | MS.gene24818:intron | 50.0% | |
ATGTCGGAGACCATCCGAAT+AGG | + | chr8.1:6922033-6922052 | None:intergenic | 50.0% | |
CACCTCAAATGCCACACTGA+CGG | + | chr8.1:6924331-6924350 | None:intergenic | 50.0% | |
CGACTCCAATCCTATTCGGA+TGG | - | chr8.1:6922020-6922039 | MS.gene24818:intron | 50.0% | |
CTACTCTCAAGGGGAACCAT+AGG | - | chr8.1:6922397-6922416 | MS.gene24818:intron | 50.0% | |
CTCGGCAGGAAGAACAACAT+CGG | + | chr8.1:6922427-6922446 | None:intergenic | 50.0% | |
GGAGACCATCCGAATAGGAT+TGG | + | chr8.1:6922028-6922047 | None:intergenic | 50.0% | |
GGGGAAGAATATGTGCGGTA+AGG | - | chr8.1:6924708-6924727 | MS.gene24818:intron | 50.0% | |
GTTAAGGATCAAGGCCACTG+CGG | - | chr8.1:6923125-6923144 | MS.gene24818:CDS | 50.0% | |
TATTCGGATGGTCTCCGACA+TGG | - | chr8.1:6922032-6922051 | MS.gene24818:intron | 50.0% | |
TCCGAATAGGATTGGAGTCG+TGG | + | chr8.1:6922020-6922039 | None:intergenic | 50.0% | |
TCTTTCTGAGCAGCAGCTAG+TGG | - | chr8.1:6923746-6923765 | MS.gene24818:intron | 50.0% | |
! | CAGGTTGCTTTCTGACTGTG+AGG | - | chr8.1:6923163-6923182 | MS.gene24818:CDS | 50.0% |
! | CTTATGGTGGAAGGTGTGTC+TGG | + | chr8.1:6922594-6922613 | None:intergenic | 50.0% |
! | GAGGAAGCATATCCCTACAC+TGG | - | chr8.1:6923861-6923880 | MS.gene24818:CDS | 50.0% |
! | GGGACCATTTTGTCCAGTGT+AGG | + | chr8.1:6923877-6923896 | None:intergenic | 50.0% |
! | TTTGGAGTCAGCTTACGCAC+AGG | - | chr8.1:6923704-6923723 | MS.gene24818:intron | 50.0% |
!! | CAAGTGTGTTGGTGCCATCT+CGG | - | chr8.1:6922559-6922578 | MS.gene24818:CDS | 50.0% |
!! | GCTGTTCTTGCTGTTGGGTA+TGG | - | chr8.1:6924601-6924620 | MS.gene24818:CDS | 50.0% |
ATGTCCAGCATGATCCGCAG+TGG | + | chr8.1:6923142-6923161 | None:intergenic | 55.0% | |
CGATGTTGTTCTTCCTGCCG+AGG | - | chr8.1:6922425-6922444 | MS.gene24818:intron | 55.0% | |
CGTCAGTGTGGCATTTGAGG+TGG | - | chr8.1:6924329-6924348 | MS.gene24818:intron | 55.0% | |
CTGCAGCACAACTGGAGCTT+TGG | - | chr8.1:6923686-6923705 | MS.gene24818:intron | 55.0% | |
GCGGATCATGCTGGACATTC+AGG | - | chr8.1:6923144-6923163 | MS.gene24818:CDS | 55.0% | |
GGAGTCGTGGAAGCTCAATC+CGG | + | chr8.1:6922007-6922026 | None:intergenic | 55.0% | |
TCAGCTTACGCACAGGCCTT+CGG | - | chr8.1:6923711-6923730 | MS.gene24818:intron | 55.0% | |
TCCCGTCAGTGTGGCATTTG+AGG | - | chr8.1:6924326-6924345 | MS.gene24818:intron | 55.0% | |
TGTTGCTGACATACCTCGGC+AGG | + | chr8.1:6922441-6922460 | None:intergenic | 55.0% | |
! | CAATGGTGGCCTTGAGACAG+AGG | - | chr8.1:6923842-6923861 | MS.gene24818:CDS | 55.0% |
! | TTTTGCTCGTCCCGTCAGTG+TGG | - | chr8.1:6924317-6924336 | MS.gene24818:intron | 55.0% |
!!! | GTTTTGGGTGTAGGGTGCTG+AGG | - | chr8.1:6924272-6924291 | MS.gene24818:intron | 55.0% |
AAGGCCACTGCGGATCATGC+TGG | - | chr8.1:6923135-6923154 | MS.gene24818:CDS | 60.0% | |
AGCGAGCGAAAGAGACAGCG+TGG | + | chr8.1:6922092-6922111 | None:intergenic | 60.0% | |
GGAGGTGAATGGGGTGACCA+TGG | - | chr8.1:6924667-6924686 | MS.gene24818:intron | 60.0% | |
GTCGTGGAAGCTCAATCCGG+CGG | + | chr8.1:6922004-6922023 | None:intergenic | 60.0% | |
!! | CAGCAGCTAGTGGACTGTGC+TGG | - | chr8.1:6923756-6923775 | MS.gene24818:intron | 60.0% |
GTGGAAGCTCAATCCGGCGG+CGG | + | chr8.1:6922001-6922020 | None:intergenic | 65.0% | |
GAAGCTCAATCCGGCGGCGG+CGG | + | chr8.1:6921998-6922017 | None:intergenic | 70.0% | |
! | GCTCAATCCGGCGGCGGCGG+TGG | + | chr8.1:6921995-6922014 | None:intergenic | 80.0% |
! | TGCGTGGCCACCGCCGCCGC+CGG | - | chr8.1:6921985-6922004 | MS.gene24818:intron | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 6921952 | 6925022 | 6921952 | ID=MS.gene24818 |
chr8.1 | mRNA | 6921952 | 6925022 | 6921952 | ID=MS.gene24818.t1;Parent=MS.gene24818 |
chr8.1 | exon | 6924731 | 6925022 | 6924731 | ID=MS.gene24818.t1.exon1;Parent=MS.gene24818.t1 |
chr8.1 | CDS | 6924731 | 6925022 | 6924731 | ID=cds.MS.gene24818.t1;Parent=MS.gene24818.t1 |
chr8.1 | exon | 6924528 | 6924643 | 6924528 | ID=MS.gene24818.t1.exon2;Parent=MS.gene24818.t1 |
chr8.1 | CDS | 6924528 | 6924643 | 6924528 | ID=cds.MS.gene24818.t1;Parent=MS.gene24818.t1 |
chr8.1 | exon | 6923809 | 6923882 | 6923809 | ID=MS.gene24818.t1.exon3;Parent=MS.gene24818.t1 |
chr8.1 | CDS | 6923809 | 6923882 | 6923809 | ID=cds.MS.gene24818.t1;Parent=MS.gene24818.t1 |
chr8.1 | exon | 6923018 | 6923282 | 6923018 | ID=MS.gene24818.t1.exon4;Parent=MS.gene24818.t1 |
chr8.1 | CDS | 6923018 | 6923282 | 6923018 | ID=cds.MS.gene24818.t1;Parent=MS.gene24818.t1 |
chr8.1 | exon | 6922558 | 6922689 | 6922558 | ID=MS.gene24818.t1.exon5;Parent=MS.gene24818.t1 |
chr8.1 | CDS | 6922558 | 6922689 | 6922558 | ID=cds.MS.gene24818.t1;Parent=MS.gene24818.t1 |
chr8.1 | exon | 6922250 | 6922385 | 6922250 | ID=MS.gene24818.t1.exon6;Parent=MS.gene24818.t1 |
chr8.1 | CDS | 6922250 | 6922385 | 6922250 | ID=cds.MS.gene24818.t1;Parent=MS.gene24818.t1 |
chr8.1 | exon | 6921952 | 6921989 | 6921952 | ID=MS.gene24818.t1.exon7;Parent=MS.gene24818.t1 |
chr8.1 | CDS | 6921952 | 6921989 | 6921952 | ID=cds.MS.gene24818.t1;Parent=MS.gene24818.t1 |
Gene Sequence |
Protein sequence |