AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028850.t1 MTR_2g090890 92.941 340 22 1 1 340 1 338 0.0 664
MS.gene028850.t1 MTR_4g079440 61.584 341 126 3 1 338 6 344 1.40e-157 445
MS.gene028850.t1 MTR_5g022560 51.754 342 149 6 5 338 10 343 1.37e-119 348
MS.gene028850.t1 MTR_4g107930 51.940 335 152 4 10 337 11 343 5.40e-119 347
MS.gene028850.t1 MTR_4g047610 53.698 311 135 4 35 338 34 342 2.31e-116 340
MS.gene028850.t1 MTR_3g075390 50.430 349 158 6 3 340 2 346 2.39e-116 341
MS.gene028850.t1 MTR_4g079770 53.035 313 139 4 31 337 33 343 2.19e-115 338
MS.gene028850.t1 MTR_4g079470 53.896 308 134 4 37 338 39 344 1.46e-114 336
MS.gene028850.t1 MTR_4g079800 52.229 314 142 4 31 338 33 344 1.26e-113 333
MS.gene028850.t1 MTR_4g080730 50.629 318 150 5 23 337 25 338 2.12e-113 333
MS.gene028850.t1 MTR_4g094918 47.839 347 165 7 4 340 3 343 1.99e-112 331
MS.gene028850.t1 MTR_4g080700 51.307 306 143 4 35 337 36 338 1.16e-110 326
MS.gene028850.t1 MTR_1g107550 52.229 314 138 6 35 339 46 356 2.63e-110 330
MS.gene028850.t1 MTR_2g075830 52.427 309 139 5 35 338 35 340 6.89e-108 319
MS.gene028850.t1 MTR_4g104370 52.258 310 134 7 39 339 40 344 9.72e-106 314
MS.gene028850.t1 MTR_3g102220 50.158 317 143 6 35 339 49 362 2.20e-105 317
MS.gene028850.t1 MTR_4g080360 47.198 339 165 7 9 338 8 341 2.60e-105 312
MS.gene028850.t1 MTR_1g018840 45.658 357 174 7 1 340 10 363 1.52e-103 311
MS.gene028850.t1 MTR_1g018840 45.658 357 174 7 1 340 10 363 3.30e-103 311
MS.gene028850.t1 MTR_2g083930 47.302 315 153 5 35 338 31 343 2.93e-102 305
MS.gene028850.t1 MTR_3g116080 50.164 305 145 4 39 339 47 348 4.98e-102 304
MS.gene028850.t1 MTR_3g112430 47.756 312 151 4 37 339 34 342 1.03e-95 291
MS.gene028850.t1 MTR_7g078600 48.726 314 146 9 31 338 33 337 3.07e-95 286
MS.gene028850.t1 MTR_7g079230 43.491 338 181 6 2 337 5 334 3.07e-91 276
MS.gene028850.t1 MTR_2g016180 41.346 312 168 6 39 340 51 357 4.24e-79 250
MS.gene028850.t1 MTR_2g016270 40.968 310 161 6 37 340 49 342 1.45e-78 248
MS.gene028850.t1 MTR_2g015850 45.548 292 145 8 55 338 78 363 1.52e-77 242
MS.gene028850.t1 MTR_4g065077 39.496 357 180 14 5 339 15 357 1.27e-71 227
MS.gene028850.t1 MTR_2g015920 41.009 317 163 10 39 340 53 360 6.49e-71 225
MS.gene028850.t1 MTR_2g015930 39.640 333 178 10 22 340 37 360 7.45e-68 217
MS.gene028850.t1 MTR_4g125300 41.830 306 164 7 39 338 51 348 1.26e-66 213
MS.gene028850.t1 MTR_2g067900 42.500 320 157 12 38 338 15 326 3.59e-66 211
MS.gene028850.t1 MTR_8g086470 38.202 356 170 14 5 339 31 357 8.61e-65 209
MS.gene028850.t1 MTR_2g067560 42.188 320 149 13 38 332 15 323 5.78e-63 215
MS.gene028850.t1 MTR_2g064475 38.081 344 158 13 38 336 15 348 1.15e-62 203
MS.gene028850.t1 MTR_1g023210 38.000 300 162 9 39 319 51 345 2.15e-58 192
MS.gene028850.t1 MTR_4g071060 34.521 365 201 11 4 340 5 359 2.41e-56 187
MS.gene028850.t1 MTR_1g094135 36.164 318 168 10 36 330 53 358 1.14e-55 186
MS.gene028850.t1 MTR_1g023810 44.796 221 112 7 119 336 48 261 1.52e-55 182
MS.gene028850.t1 MTR_2g066980 34.734 357 164 14 7 337 4 317 3.10e-55 183
MS.gene028850.t1 MTR_7g078630 39.850 266 126 5 35 291 702 942 4.26e-53 188
MS.gene028850.t1 MTR_4g072790 32.024 331 181 10 2 319 6 305 4.71e-46 159
MS.gene028850.t1 MTR_4g073660 30.252 357 196 12 2 340 5 326 1.53e-44 155
MS.gene028850.t1 MTR_4g072340 29.972 357 197 12 2 340 6 327 1.36e-43 153
MS.gene028850.t1 MTR_1g025450 37.696 191 95 7 104 291 38 207 5.16e-34 131
MS.gene028850.t1 MTR_7g078580 53.465 101 45 2 241 340 4 103 8.88e-32 116
MS.gene028850.t1 MTR_7g079130 56.522 92 39 1 248 338 6 97 1.05e-30 112
MS.gene028850.t1 MTR_2g015840 49.550 111 54 2 228 337 161 270 6.73e-30 115
MS.gene028850.t1 MTR_2g015840 40.854 164 82 7 1 157 1 156 3.61e-28 110
MS.gene028850.t1 MTR_2g016380 38.211 123 72 2 221 340 16 137 1.59e-24 100
MS.gene028850.t1 MTR_7g078310 40.441 136 78 2 79 214 114 246 1.39e-23 98.2
MS.gene028850.t1 MTR_7g111060 28.929 280 159 13 86 335 66 335 3.03e-22 96.3
MS.gene028850.t1 MTR_7g111050 30.175 285 155 15 86 337 63 336 7.75e-22 95.1
MS.gene028850.t1 MTR_3g029560 28.972 214 121 7 131 338 49 237 5.90e-21 90.5
MS.gene028850.t1 MTR_8g087510 42.424 132 69 5 163 292 23 149 3.68e-20 86.7
MS.gene028850.t1 MTR_2g047960 50.000 82 38 2 129 210 7 85 6.30e-16 72.8
MS.gene028850.t1 MTR_7g079260 47.222 72 21 2 265 335 7 62 6.57e-14 67.4
MS.gene028850.t1 MTR_7g111050 28.629 248 139 13 84 300 56 296 3.88e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028850.t1 AT1G06260 51.734 346 148 6 3 339 8 343 1.97e-127 369
MS.gene028850.t1 AT5G45890 50.147 341 153 8 10 337 8 344 6.00e-116 339
MS.gene028850.t1 AT3G48340 51.163 344 153 7 7 339 5 344 7.40e-115 337
MS.gene028850.t1 AT1G47128 52.922 308 136 5 39 340 50 354 1.77e-112 335
MS.gene028850.t1 AT5G43060 51.250 320 146 5 27 339 38 354 3.40e-112 334
MS.gene028850.t1 AT3G19390 48.397 343 167 7 4 339 7 346 3.19e-109 326
MS.gene028850.t1 AT5G50260 47.851 349 168 6 1 340 1 344 1.47e-108 321
MS.gene028850.t1 AT4G35350 49.429 350 158 6 6 339 7 353 2.14e-107 318
MS.gene028850.t1 AT1G20850 51.140 307 141 3 39 339 51 354 1.01e-104 311
MS.gene028850.t1 AT3G19400 49.533 321 150 8 26 339 34 349 3.61e-103 307
MS.gene028850.t1 AT3G48350 48.148 351 163 8 1 339 1 344 3.99e-102 305
MS.gene028850.t1 AT4G36880 51.361 294 128 6 59 340 73 363 7.18e-101 302
MS.gene028850.t1 AT3G49340 46.221 344 166 8 8 338 3 340 1.50e-99 298
MS.gene028850.t1 AT4G11310 47.742 310 150 5 39 340 49 354 1.85e-97 293
MS.gene028850.t1 AT2G27420 44.915 354 172 8 1 338 1 347 3.27e-97 292
MS.gene028850.t1 AT4G23520 42.363 347 189 8 1 340 9 351 8.26e-97 291
MS.gene028850.t1 AT4G11320 43.642 346 181 5 3 340 22 361 1.72e-96 291
MS.gene028850.t1 AT4G11320 43.642 346 181 5 3 340 22 361 1.72e-96 291
MS.gene028850.t1 AT1G09850 48.077 312 150 5 35 339 28 334 5.81e-96 291
MS.gene028850.t1 AT2G34080 44.413 349 178 8 1 338 1 344 1.82e-94 285
MS.gene028850.t1 AT1G29080 42.939 347 175 11 5 338 9 345 7.50e-90 273
MS.gene028850.t1 AT1G29090 41.787 347 179 10 5 338 18 354 2.58e-85 261
MS.gene028850.t1 AT3G43960 41.916 334 180 9 16 339 18 347 5.02e-81 251
MS.gene028850.t1 AT4G35350 48.421 285 127 7 6 274 7 287 6.46e-78 240
MS.gene028850.t1 AT1G29110 37.861 346 182 8 5 338 9 333 3.41e-72 227
MS.gene028850.t1 AT3G19400 49.200 250 115 8 26 268 34 278 2.18e-71 224
MS.gene028850.t1 AT5G60360 43.648 307 157 9 39 338 59 356 2.58e-70 223
MS.gene028850.t1 AT3G45310 42.345 307 161 9 39 338 59 356 1.27e-68 219
MS.gene028850.t1 AT3G48350 45.070 284 138 7 1 273 1 277 1.47e-68 217
MS.gene028850.t1 AT5G60360 42.997 307 158 9 39 338 59 355 3.95e-68 218
MS.gene028850.t1 AT3G45310 42.020 307 161 9 39 338 59 355 1.05e-66 214
MS.gene028850.t1 AT5G60360 43.902 287 149 8 39 318 59 340 2.86e-66 213
MS.gene028850.t1 AT4G39090 36.601 306 170 8 32 317 42 343 4.74e-58 192
MS.gene028850.t1 AT2G21430 33.824 340 192 10 5 317 7 340 2.36e-56 187
MS.gene028850.t1 AT3G54940 36.039 308 165 9 36 319 48 347 2.19e-54 182
MS.gene028850.t1 AT4G16190 36.667 300 167 8 39 319 55 350 8.01e-49 168
MS.gene028850.t1 AT3G54940 36.638 232 132 5 36 255 48 276 5.11e-41 145
MS.gene028850.t1 AT1G02305 30.357 280 149 14 84 330 67 333 9.43e-23 97.8
MS.gene028850.t1 AT4G01610 28.058 278 158 13 84 330 64 330 7.92e-22 95.1
MS.gene028850.t1 AT4G01610 27.338 278 160 13 84 330 64 330 6.21e-20 89.7
MS.gene028850.t1 AT1G02300 27.303 304 147 15 84 330 64 350 7.16e-15 75.5
MS.gene028850.t1 AT2G22160 40.449 89 49 1 55 139 10 98 6.44e-14 67.4

Find 67 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAAAGAATATCCTTATA+CGG 0.263303 2.3:+9506076 MS.gene028850:CDS
TAATGTTATAGTTGTCTTCA+TGG 0.274993 2.3:-9505065 None:intergenic
GCATTGTTATACTCAATCTA+TGG 0.301011 2.3:+9505089 MS.gene028850:CDS
TTACCGTCTCTTCCCGTATA+AGG 0.345193 2.3:-9506089 None:intergenic
TTCGTGCACAAACAGAATTC+AGG 0.347756 2.3:+9505383 MS.gene028850:CDS
GAGTTCAAAAGCAGCTATCT+AGG 0.369554 2.3:+9505346 MS.gene028850:CDS
GGCAAATGACTGGGGTGAAT+CGG 0.383051 2.3:+9506373 MS.gene028850:CDS
CATGCTGCTTAATGCTTGAC+AGG 0.390203 2.3:-9506467 None:intergenic
TATTCAAAAGGTGTCTTCTC+TGG 0.393618 2.3:+9506260 MS.gene028850:CDS
CTATATACTGAACATTTGAT+TGG 0.394077 2.3:-9505255 None:intergenic
GTTGGGTATGGAGAAGAATA+TGG 0.396624 2.3:+9506320 MS.gene028850:CDS
GTCTCCATTGCAACTGATGC+TGG 0.400337 2.3:+9506218 MS.gene028850:CDS
ATTGGATTGTGAAGAATTCA+TGG 0.401875 2.3:+9506351 MS.gene028850:CDS
AACCATAGCATGACTATAGT+TGG 0.412792 2.3:+9506302 MS.gene028850:CDS
AGAATTCATGGGCAAATGAC+TGG 0.416096 2.3:+9506363 MS.gene028850:CDS
TCAGCAGTGGCAGCTGTAGA+AGG 0.416880 2.3:+9505906 MS.gene028850:CDS
AAGAATATGGTGAAAAGTAT+TGG 0.423887 2.3:+9506333 MS.gene028850:CDS
GGCATCAACAAGATCAAAAC+AGG 0.429365 2.3:+9505927 MS.gene028850:CDS
GCAAATGACTGGGGTGAATC+GGG 0.433050 2.3:+9506374 MS.gene028850:CDS
TACCTCTTCTTCATGACTGC+AGG 0.434573 2.3:-9505160 None:intergenic
CTTACAAGCTCAAAGACAAC+AGG 0.445738 2.3:+9505302 MS.gene028850:CDS
AACTACCGAAAAGCATAGAT+TGG 0.448513 2.3:+9505422 MS.gene028850:CDS
ACTTGATGCAGGAAGTTGTT+GGG 0.455181 2.3:+9505878 MS.gene028850:intron
TTACAGAGACAAAGAAGAAT+GGG 0.483128 2.3:+9505213 MS.gene028850:CDS
GATCAAGGCCATTGTGGATG+TGG 0.483333 2.3:+9505475 MS.gene028850:CDS
GCATCAGTTGCAATGGAGAC+AGG 0.486545 2.3:-9506215 None:intergenic
CAGGATGAAGCGTGATACTA+AGG 0.488875 2.3:+9506403 MS.gene028850:CDS
AGCATAGATTGGAGAAAGAA+AGG 0.490600 2.3:+9505433 MS.gene028850:CDS
GGGGTGAATCGGGTTATGTC+AGG 0.495291 2.3:+9506384 MS.gene028850:CDS
ATTACAGAGACAAAGAAGAA+TGG 0.495586 2.3:+9505212 MS.gene028850:CDS
ACCATAGCATGACTATAGTT+GGG 0.508461 2.3:+9506303 MS.gene028850:CDS
ATAGATTGTGATACTAAAAG+TGG 0.511221 2.3:+9505981 MS.gene028850:CDS
AGCATGACTATAGTTGGGTA+TGG 0.515139 2.3:+9506308 MS.gene028850:CDS
AACTTGATGCAGGAAGTTGT+TGG 0.521381 2.3:+9505877 MS.gene028850:intron
CTATAGTCATGCTATGGTTG+AGG 0.528963 2.3:-9506298 None:intergenic
AACAATGCTGTAACTATAAG+CGG 0.529987 2.3:+9506134 MS.gene028850:CDS
GTTACACACGTCAAAGATCA+AGG 0.535305 2.3:+9505460 MS.gene028850:CDS
GCTAAAGAATATCCTTATAC+GGG 0.537674 2.3:+9506077 MS.gene028850:CDS
ACCTCCAGCATCAGTTGCAA+TGG 0.538125 2.3:-9506222 None:intergenic
GAATTCATGGGCAAATGACT+GGG 0.555476 2.3:+9506364 MS.gene028850:CDS
GGGAACGAAGGCTGCGAAGG+TGG 0.557973 2.3:+9506002 MS.gene028850:CDS
GACAGGGTATGTAGCATCCA+TGG 0.561875 2.3:-9506450 None:intergenic
GAAACATGGCTGAAACGATA+CGG 0.571747 2.3:+9505184 MS.gene028850:CDS
ACCCAACTATAGTCATGCTA+TGG 0.575488 2.3:-9506304 None:intergenic
ATCCTGCAGTCATGAAGAAG+AGG 0.579274 2.3:+9505158 MS.gene028850:CDS
GGTGTCTTCTCTGGAAGTTG+TGG 0.581965 2.3:+9506269 MS.gene028850:CDS
CGGGACTTGTGGCATTGCCA+TGG 0.583936 2.3:+9506433 MS.gene028850:CDS
AGTGGGAACGAAGGCTGCGA+AGG 0.593884 2.3:+9505999 MS.gene028850:CDS
TTGGATTGTGAAGAATTCAT+GGG 0.600522 2.3:+9506352 MS.gene028850:CDS
ATAAGGATATTCTTTAGCAG+TGG 0.604194 2.3:-9506072 None:intergenic
CTTCTCTGGAAGTTGTGGAA+AGG 0.605603 2.3:+9506274 MS.gene028850:CDS
TATCCTTATACGGGAAGAGA+CGG 0.606393 2.3:+9506086 MS.gene028850:CDS
CGTGATACTAAGGATAAAGA+CGG 0.610192 2.3:+9506413 MS.gene028850:CDS
TTGTTGGGCATTCTCAGCAG+TGG 0.614237 2.3:+9505893 MS.gene028850:CDS
GTCAAAGATCAAGGCCATTG+TGG 0.621423 2.3:+9505469 MS.gene028850:CDS
AAGGATAAAGACGGGACTTG+TGG 0.629104 2.3:+9506422 MS.gene028850:CDS
TGAAGAAGAGGTATGAAACA+TGG 0.632545 2.3:+9505170 MS.gene028850:CDS
TCTGTTTGTGCACGAAACCG+AGG 0.636565 2.3:-9505376 None:intergenic
TAGATTGTGATACTAAAAGT+GGG 0.640736 2.3:+9505982 MS.gene028850:CDS
GAATTCAGGTATCATAAACA+TGG 0.645354 2.3:+9505397 MS.gene028850:CDS
GTGATACTAAGGATAAAGAC+GGG 0.649998 2.3:+9506414 MS.gene028850:CDS
AAGAGACGGTAAGTGTAACA+AGG 0.663083 2.3:+9506100 MS.gene028850:CDS
ATGCTGCTTAATGCTTGACA+GGG 0.670927 2.3:-9506466 None:intergenic
GATACTAAAAGTGGGAACGA+AGG 0.673528 2.3:+9505990 MS.gene028850:CDS
TCCATTGCAACTGATGCTGG+AGG 0.678137 2.3:+9506221 MS.gene028850:CDS
ATAAACTACCACATCCACAA+TGG 0.681633 2.3:-9505483 None:intergenic
AATTCATGGGCAAATGACTG+GGG 0.692239 2.3:+9506365 MS.gene028850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGAAATTTATGTTTT+GGG + chr2.3:9505829-9505848 MS.gene028850:intron 10.0%
!!! AAATGAATAAACTTTTTTTG+AGG - chr2.3:9505545-9505564 None:intergenic 15.0%
!!! CATTTTTGAAATTTATGTTT+TGG + chr2.3:9505828-9505847 MS.gene028850:intron 15.0%
!!! GCATTTCAATTTTATTCAAA+AGG + chr2.3:9506248-9506267 MS.gene028850:CDS 20.0%
! ATAGATTGTGATACTAAAAG+TGG + chr2.3:9505981-9506000 MS.gene028850:CDS 25.0%
! CTATATACTGAACATTTGAT+TGG - chr2.3:9505258-9505277 None:intergenic 25.0%
! TAGATTGTGATACTAAAAGT+GGG + chr2.3:9505982-9506001 MS.gene028850:CDS 25.0%
! TGCTAAAGAATATCCTTATA+CGG + chr2.3:9506076-9506095 MS.gene028850:CDS 25.0%
! TTCAACTACATCAAAAAACA+CGG + chr2.3:9506041-9506060 MS.gene028850:CDS 25.0%
!! AAGAATATGGTGAAAAGTAT+TGG + chr2.3:9506333-9506352 MS.gene028850:CDS 25.0%
AACAATGCTGTAACTATAAG+CGG + chr2.3:9506134-9506153 MS.gene028850:CDS 30.0%
ATAAGGATATTCTTTAGCAG+TGG - chr2.3:9506075-9506094 None:intergenic 30.0%
ATTACAGAGACAAAGAAGAA+TGG + chr2.3:9505212-9505231 MS.gene028850:CDS 30.0%
ATTGGATTGTGAAGAATTCA+TGG + chr2.3:9506351-9506370 MS.gene028850:CDS 30.0%
GAAAATAGTTACTTACCTTG+AGG + chr2.3:9505722-9505741 MS.gene028850:intron 30.0%
GAATTCAGGTATCATAAACA+TGG + chr2.3:9505397-9505416 MS.gene028850:CDS 30.0%
GCATTGTTATACTCAATCTA+TGG + chr2.3:9505089-9505108 MS.gene028850:CDS 30.0%
GCTAAAGAATATCCTTATAC+GGG + chr2.3:9506077-9506096 MS.gene028850:CDS 30.0%
TGTTAAGTAGTAATTCCTCA+AGG - chr2.3:9505740-9505759 None:intergenic 30.0%
TTACAGAGACAAAGAAGAAT+GGG + chr2.3:9505213-9505232 MS.gene028850:CDS 30.0%
TTGGATTGTGAAGAATTCAT+GGG + chr2.3:9506352-9506371 MS.gene028850:CDS 30.0%
! TTTCTCCAATCTATGCTTTT+CGG - chr2.3:9505430-9505449 None:intergenic 30.0%
!! ATTTATGTTTTGGGCTGATA+TGG + chr2.3:9505838-9505857 MS.gene028850:intron 30.0%
!!! TACAGCATTGTTTTTAGCTT+TGG - chr2.3:9506126-9506145 None:intergenic 30.0%
AACCATAGCATGACTATAGT+TGG + chr2.3:9506302-9506321 MS.gene028850:CDS 35.0%
AACTACATCAAAAAACACGG+AGG + chr2.3:9506044-9506063 MS.gene028850:CDS 35.0%
ACCATAGCATGACTATAGTT+GGG + chr2.3:9506303-9506322 MS.gene028850:CDS 35.0%
ACTACATCAAAAAACACGGA+GGG + chr2.3:9506045-9506064 MS.gene028850:CDS 35.0%
ACTTATCGTTTAGTTGTGCA+TGG - chr2.3:9505627-9505646 None:intergenic 35.0%
AGCATAGATTGGAGAAAGAA+AGG + chr2.3:9505433-9505452 MS.gene028850:CDS 35.0%
ATAAACTACCACATCCACAA+TGG - chr2.3:9505486-9505505 None:intergenic 35.0%
CGTGATACTAAGGATAAAGA+CGG + chr2.3:9506413-9506432 MS.gene028850:CDS 35.0%
GTGATACTAAGGATAAAGAC+GGG + chr2.3:9506414-9506433 MS.gene028850:CDS 35.0%
GTTTGTGATATGAACATGAC+AGG + chr2.3:9505669-9505688 MS.gene028850:intron 35.0%
! AACTACCGAAAAGCATAGAT+TGG + chr2.3:9505422-9505441 MS.gene028850:CDS 35.0%
! GAATTCTTTTTGTGCATTGC+AGG - chr2.3:9505133-9505152 None:intergenic 35.0%
! TGAAGAAGAGGTATGAAACA+TGG + chr2.3:9505170-9505189 MS.gene028850:CDS 35.0%
!! TATTCAAAAGGTGTCTTCTC+TGG + chr2.3:9506260-9506279 MS.gene028850:CDS 35.0%
AACTTGATGCAGGAAGTTGT+TGG + chr2.3:9505877-9505896 MS.gene028850:intron 40.0%
AAGAGACGGTAAGTGTAACA+AGG + chr2.3:9506100-9506119 MS.gene028850:CDS 40.0%
AATTCATGGGCAAATGACTG+GGG + chr2.3:9506365-9506384 MS.gene028850:CDS 40.0%
ACCCAACTATAGTCATGCTA+TGG - chr2.3:9506307-9506326 None:intergenic 40.0%
ACTTGATGCAGGAAGTTGTT+GGG + chr2.3:9505878-9505897 MS.gene028850:intron 40.0%
AGAATTCATGGGCAAATGAC+TGG + chr2.3:9506363-9506382 MS.gene028850:CDS 40.0%
AGCATGACTATAGTTGGGTA+TGG + chr2.3:9506308-9506327 MS.gene028850:CDS 40.0%
CTATAGTCATGCTATGGTTG+AGG - chr2.3:9506301-9506320 None:intergenic 40.0%
CTTACAAGCTCAAAGACAAC+AGG + chr2.3:9505302-9505321 MS.gene028850:CDS 40.0%
GAAACATGGCTGAAACGATA+CGG + chr2.3:9505184-9505203 MS.gene028850:CDS 40.0%
GAATTCATGGGCAAATGACT+GGG + chr2.3:9506364-9506383 MS.gene028850:CDS 40.0%
GAGTTCAAAAGCAGCTATCT+AGG + chr2.3:9505346-9505365 MS.gene028850:CDS 40.0%
GATACTAAAAGTGGGAACGA+AGG + chr2.3:9505990-9506009 MS.gene028850:CDS 40.0%
GGCATCAACAAGATCAAAAC+AGG + chr2.3:9505927-9505946 MS.gene028850:CDS 40.0%
GTTACACACGTCAAAGATCA+AGG + chr2.3:9505460-9505479 MS.gene028850:CDS 40.0%
GTTGGGTATGGAGAAGAATA+TGG + chr2.3:9506320-9506339 MS.gene028850:CDS 40.0%
TATCCTTATACGGGAAGAGA+CGG + chr2.3:9506086-9506105 MS.gene028850:CDS 40.0%
TTCGTGCACAAACAGAATTC+AGG + chr2.3:9505383-9505402 MS.gene028850:CDS 40.0%
! GCTATCTAGGTTTTCTACCT+CGG + chr2.3:9505359-9505378 MS.gene028850:CDS 40.0%
!! TATGTTTTGGGCTGATATGG+TGG + chr2.3:9505841-9505860 MS.gene028850:intron 40.0%
AAGGATAAAGACGGGACTTG+TGG + chr2.3:9506422-9506441 MS.gene028850:CDS 45.0%
ATCCTGCAGTCATGAAGAAG+AGG + chr2.3:9505158-9505177 MS.gene028850:CDS 45.0%
CAGGATGAAGCGTGATACTA+AGG + chr2.3:9506403-9506422 MS.gene028850:CDS 45.0%
GTCAAAGATCAAGGCCATTG+TGG + chr2.3:9505469-9505488 MS.gene028850:CDS 45.0%
TACCTCTTCTTCATGACTGC+AGG - chr2.3:9505163-9505182 None:intergenic 45.0%
TTACCGTCTCTTCCCGTATA+AGG - chr2.3:9506092-9506111 None:intergenic 45.0%
! AGCATTTTCTCATTGCGAGC+AGG - chr2.3:9506173-9506192 None:intergenic 45.0%
! CTTCTCTGGAAGTTGTGGAA+AGG + chr2.3:9506274-9506293 MS.gene028850:CDS 45.0%
! GGTGGTGTTAAACTTGATGC+AGG + chr2.3:9505867-9505886 MS.gene028850:intron 45.0%
!! TTTGGGCTGATATGGTGGAT+TGG + chr2.3:9505846-9505865 MS.gene028850:intron 45.0%
ACCTCCAGCATCAGTTGCAA+TGG - chr2.3:9506225-9506244 None:intergenic 50.0%
GACAGGGTATGTAGCATCCA+TGG - chr2.3:9506453-9506472 None:intergenic 50.0%
GATCAAGGCCATTGTGGATG+TGG + chr2.3:9505475-9505494 MS.gene028850:CDS 50.0%
GCAAATGACTGGGGTGAATC+GGG + chr2.3:9506374-9506393 MS.gene028850:CDS 50.0%
GCATCAGTTGCAATGGAGAC+AGG - chr2.3:9506218-9506237 None:intergenic 50.0%
GGCAAATGACTGGGGTGAAT+CGG + chr2.3:9506373-9506392 MS.gene028850:CDS 50.0%
GTCTCCATTGCAACTGATGC+TGG + chr2.3:9506218-9506237 MS.gene028850:CDS 50.0%
TCCATTGCAACTGATGCTGG+AGG + chr2.3:9506221-9506240 MS.gene028850:CDS 50.0%
TCTGTTTGTGCACGAAACCG+AGG - chr2.3:9505379-9505398 None:intergenic 50.0%
TTGTTGGGCATTCTCAGCAG+TGG + chr2.3:9505893-9505912 MS.gene028850:CDS 50.0%
! GGTGTCTTCTCTGGAAGTTG+TGG + chr2.3:9506269-9506288 MS.gene028850:CDS 50.0%
GGGGTGAATCGGGTTATGTC+AGG + chr2.3:9506384-9506403 MS.gene028850:CDS 55.0%
TCAGCAGTGGCAGCTGTAGA+AGG + chr2.3:9505906-9505925 MS.gene028850:CDS 55.0%
!! GGGCTGATATGGTGGATTGG+TGG + chr2.3:9505849-9505868 MS.gene028850:intron 55.0%
AGTGGGAACGAAGGCTGCGA+AGG + chr2.3:9505999-9506018 MS.gene028850:CDS 60.0%
CGGGACTTGTGGCATTGCCA+TGG + chr2.3:9506433-9506452 MS.gene028850:CDS 60.0%
GGGAACGAAGGCTGCGAAGG+TGG + chr2.3:9506002-9506021 MS.gene028850:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 9505067 9506481 9505067 ID=MS.gene028850
chr2.3 mRNA 9505067 9506481 9505067 ID=MS.gene028850.t1;Parent=MS.gene028850
chr2.3 exon 9505067 9505496 9505067 ID=MS.gene028850.t1.exon1;Parent=MS.gene028850.t1
chr2.3 CDS 9505067 9505496 9505067 ID=cds.MS.gene028850.t1;Parent=MS.gene028850.t1
chr2.3 exon 9505889 9506481 9505889 ID=MS.gene028850.t1.exon2;Parent=MS.gene028850.t1
chr2.3 CDS 9505889 9506481 9505889 ID=cds.MS.gene028850.t1;Parent=MS.gene028850.t1
Gene Sequence

>MS.gene028850

ATGAAGACAACTATAACATTAAGCATTGTTATACTCAATCTATGGATAACTGCAAGTGCATGTCCTGCAATGCACAAAAAGAATTCAACTAATCCTGCAGTCATGAAGAAGAGGTATGAAACATGGCTGAAACGATACGGACGACATTACAGAGACAAAGAAGAATGGGAAGTTCGTTTCGACATTTACCAATCAAATGTTCAGTATATAGAGTTCTACAACTCTCAAAACTATTCTTACAAGCTCAAAGACAACAGGTTTGCAGATCTTACTAATGAAGAGTTCAAAAGCAGCTATCTAGGTTTTCTACCTCGGTTTCGTGCACAAACAGAATTCAGGTATCATAAACATGGAGAACTACCGAAAAGCATAGATTGGAGAAAGAAAGGTGCAGTTACACACGTCAAAGATCAAGGCCATTGTGGATGTGGTAGTTTATTGCAAATCAAGTTTATTAAATTTTTTTTTTTTTTTGCCTCAAAAAAAGTTTATTCATTTTCTCAAATATTACAGTTTAGCTACTAGTATGCTATGATATATACACAAATCTAGTAGCTCCATGCACAACTAAACGATAAGTCTATACGAACTTTATCTTAAGTGTTTGTGATATGAACATGACAGGATAAATTAGTCTTATAGTTATATCTATAAAGAAAATAGTTACTTACCTTGAGGAATTACTACTTAACAAGTAAATGTATTTGAAGTCTTCTGAAGTTTATCTATTGCTAAGTAGCGAGCTAAAGAGCACGCTTAAACATTTTTGAAATTTATGTTTTGGGCTGATATGGTGGATTGGTGGTGTTAAACTTGATGCAGGAAGTTGTTGGGCATTCTCAGCAGTGGCAGCTGTAGAAGGCATCAACAAGATCAAAACAGGAAATTTAGTTTCTCTATCAGAACAACAGTTGATAGATTGTGATACTAAAAGTGGGAACGAAGGCTGCGAAGGTGGCGACATGTACATAGCATTCAACTACATCAAAAAACACGGAGGGTTAGCCACTGCTAAAGAATATCCTTATACGGGAAGAGACGGTAAGTGTAACAAGGCCAAAGCTAAAAACAATGCTGTAACTATAAGCGGCTACGAAAGTGTACCTGCTCGCAATGAGAAAATGCTTAAAGCTGCAGTTGCTCATCAGCCTGTCTCCATTGCAACTGATGCTGGAGGTTATGCATTTCAATTTTATTCAAAAGGTGTCTTCTCTGGAAGTTGTGGAAAGGACCTCAACCATAGCATGACTATAGTTGGGTATGGAGAAGAATATGGTGAAAAGTATTGGATTGTGAAGAATTCATGGGCAAATGACTGGGGTGAATCGGGTTATGTCAGGATGAAGCGTGATACTAAGGATAAAGACGGGACTTGTGGCATTGCCATGGATGCTACATACCCTGTCAAGCATTAA
Protein sequence

>MS.gene028850.t1

MKTTITLSIVILNLWITASACPAMHKKNSTNPAVMKKRYETWLKRYGRHYRDKEEWEVRFDIYQSNVQYIEFYNSQNYSYKLKDNRFADLTNEEFKSSYLGFLPRFRAQTEFRYHKHGELPKSIDWRKKGAVTHVKDQGHCGCGSCWAFSAVAAVEGINKIKTGNLVSLSEQQLIDCDTKSGNEGCEGGDMYIAFNYIKKHGGLATAKEYPYTGRDGKCNKAKAKNNAVTISGYESVPARNEKMLKAAVAHQPVSIATDAGGYAFQFYSKGVFSGSCGKDLNHSMTIVGYGEEYGEKYWIVKNSWANDWGESGYVRMKRDTKDKDGTCGIAMDATYPVKH