AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055760.t1 MTR_2g090890 93.491 338 22 0 1 338 1 338 0.0 670
MS.gene055760.t1 MTR_4g079440 61.947 339 126 2 1 336 6 344 8.27e-160 451
MS.gene055760.t1 MTR_5g022560 51.765 340 150 5 5 336 10 343 3.18e-120 350
MS.gene055760.t1 MTR_4g107930 51.952 333 153 3 10 335 11 343 7.78e-120 349
MS.gene055760.t1 MTR_3g075390 50.720 347 158 5 3 338 2 346 1.41e-118 347
MS.gene055760.t1 MTR_4g047610 53.722 309 136 3 35 336 34 342 4.83e-117 342
MS.gene055760.t1 MTR_4g079770 53.055 311 140 3 31 335 33 343 6.20e-116 339
MS.gene055760.t1 MTR_4g080730 50.949 316 150 4 23 335 25 338 1.20e-115 338
MS.gene055760.t1 MTR_4g079470 53.922 306 135 3 37 336 39 344 2.45e-115 338
MS.gene055760.t1 MTR_4g094918 48.116 345 165 6 4 338 3 343 2.20e-114 336
MS.gene055760.t1 MTR_4g079800 52.244 312 143 3 31 336 33 344 2.41e-114 335
MS.gene055760.t1 MTR_4g080700 51.645 304 143 3 35 335 36 338 8.59e-113 331
MS.gene055760.t1 MTR_1g107550 52.564 312 138 5 35 337 46 356 1.79e-112 335
MS.gene055760.t1 MTR_4g104370 52.597 308 134 6 39 337 40 344 4.24e-108 320
MS.gene055760.t1 MTR_3g102220 50.476 315 143 5 35 337 49 362 1.61e-107 322
MS.gene055760.t1 MTR_2g075830 52.443 307 140 4 35 336 35 340 1.95e-107 317
MS.gene055760.t1 MTR_4g080360 47.478 337 165 6 9 336 8 341 3.18e-107 317
MS.gene055760.t1 MTR_1g018840 46.197 355 173 6 1 338 10 363 1.71e-106 319
MS.gene055760.t1 MTR_1g018840 46.197 355 173 6 1 338 10 363 3.14e-106 319
MS.gene055760.t1 MTR_3g116080 50.825 303 144 3 39 337 47 348 8.92e-105 311
MS.gene055760.t1 MTR_2g083930 46.965 313 155 3 35 336 31 343 6.15e-103 306
MS.gene055760.t1 MTR_3g112430 47.742 310 152 3 37 337 34 342 1.06e-96 293
MS.gene055760.t1 MTR_7g078600 48.718 312 147 8 31 336 33 337 2.09e-96 289
MS.gene055760.t1 MTR_7g079230 43.452 336 182 5 2 335 5 334 2.36e-92 279
MS.gene055760.t1 MTR_2g016180 41.613 310 168 5 39 338 51 357 8.45e-81 254
MS.gene055760.t1 MTR_2g016270 41.234 308 161 5 37 338 49 342 2.51e-80 253
MS.gene055760.t1 MTR_2g015850 45.517 290 146 7 55 336 78 363 4.83e-78 243
MS.gene055760.t1 MTR_4g065077 39.276 359 184 13 1 337 11 357 1.43e-73 232
MS.gene055760.t1 MTR_2g015920 41.270 315 163 9 39 338 53 360 1.10e-72 230
MS.gene055760.t1 MTR_4g125300 42.434 304 163 7 39 336 51 348 1.71e-68 218
MS.gene055760.t1 MTR_2g015930 39.759 332 177 10 22 338 37 360 6.35e-68 217
MS.gene055760.t1 MTR_2g067900 42.767 318 157 11 38 336 15 326 6.83e-68 216
MS.gene055760.t1 MTR_8g086470 38.418 354 170 13 5 337 31 357 1.20e-66 214
MS.gene055760.t1 MTR_2g067560 42.138 318 150 13 38 330 15 323 1.74e-62 214
MS.gene055760.t1 MTR_2g064475 37.791 344 157 13 38 334 15 348 3.22e-62 202
MS.gene055760.t1 MTR_1g023210 38.591 298 161 8 39 317 51 345 2.56e-61 200
MS.gene055760.t1 MTR_4g071060 35.777 341 188 8 4 317 5 341 5.94e-59 194
MS.gene055760.t1 MTR_1g094135 36.709 316 167 9 36 328 53 358 1.74e-58 193
MS.gene055760.t1 MTR_2g066980 34.648 355 165 13 7 335 4 317 3.91e-56 186
MS.gene055760.t1 MTR_1g023810 44.292 219 114 6 119 334 48 261 1.98e-55 182
MS.gene055760.t1 MTR_7g078630 39.850 266 124 5 35 289 702 942 2.99e-53 188
MS.gene055760.t1 MTR_4g072790 32.523 329 180 9 2 317 6 305 5.77e-49 167
MS.gene055760.t1 MTR_4g073660 31.231 333 183 9 2 317 5 308 6.77e-47 162
MS.gene055760.t1 MTR_4g072340 30.931 333 184 9 2 317 6 309 3.51e-46 160
MS.gene055760.t1 MTR_1g025450 37.895 190 94 7 104 289 38 207 2.39e-34 132
MS.gene055760.t1 MTR_7g078580 52.475 101 46 2 239 338 4 103 5.46e-31 114
MS.gene055760.t1 MTR_2g015840 50.450 111 53 2 226 335 161 270 2.57e-30 116
MS.gene055760.t1 MTR_2g015840 40.741 162 83 6 1 155 1 156 1.10e-28 112
MS.gene055760.t1 MTR_7g079130 55.435 92 40 1 246 336 6 97 8.74e-30 110
MS.gene055760.t1 MTR_2g016380 38.211 123 72 2 219 338 16 137 2.62e-24 99.8
MS.gene055760.t1 MTR_7g111050 30.742 283 154 14 86 335 63 336 5.81e-24 101
MS.gene055760.t1 MTR_7g111060 29.137 278 159 12 86 333 66 335 6.10e-24 100
MS.gene055760.t1 MTR_7g078310 40.441 136 76 3 79 212 114 246 1.30e-23 98.2
MS.gene055760.t1 MTR_3g029560 29.245 212 121 6 131 336 49 237 6.46e-23 95.9
MS.gene055760.t1 MTR_8g087510 42.424 132 69 5 161 290 23 149 4.01e-20 86.7
MS.gene055760.t1 MTR_2g047960 51.250 80 38 1 129 208 7 85 7.10e-18 78.2
MS.gene055760.t1 MTR_7g111050 28.862 246 139 12 84 298 56 296 9.15e-15 73.9
MS.gene055760.t1 MTR_7g079260 45.833 72 22 2 263 333 7 62 4.28e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055760.t1 AT1G06260 52.035 344 148 5 3 337 8 343 1.18e-129 374
MS.gene055760.t1 AT3G48340 51.462 342 153 6 7 337 5 344 6.94e-117 342
MS.gene055760.t1 AT5G45890 49.853 339 155 7 10 335 8 344 1.59e-115 338
MS.gene055760.t1 AT1G47128 53.268 306 136 4 39 338 50 354 1.47e-114 340
MS.gene055760.t1 AT5G43060 51.572 318 146 4 27 337 38 354 2.87e-114 339
MS.gene055760.t1 AT3G19390 48.680 341 167 6 4 337 7 346 2.82e-111 331
MS.gene055760.t1 AT5G50260 48.127 347 168 5 1 338 1 344 8.68e-111 327
MS.gene055760.t1 AT4G35350 50.000 348 157 5 6 337 7 353 2.12e-110 325
MS.gene055760.t1 AT1G20850 51.803 305 140 2 39 337 51 354 1.71e-107 318
MS.gene055760.t1 AT3G19400 49.843 319 150 7 26 337 34 349 2.55e-105 313
MS.gene055760.t1 AT3G48350 48.424 349 163 7 1 337 1 344 2.64e-104 310
MS.gene055760.t1 AT4G36880 52.055 292 127 5 59 338 73 363 3.68e-103 308
MS.gene055760.t1 AT3G49340 46.199 342 167 7 8 336 3 340 7.03e-100 298
MS.gene055760.t1 AT4G11310 48.052 308 150 4 39 338 49 354 1.19e-99 298
MS.gene055760.t1 AT2G27420 45.170 352 172 7 1 336 1 347 2.82e-99 297
MS.gene055760.t1 AT4G11320 43.895 344 181 4 3 338 22 361 8.73e-99 296
MS.gene055760.t1 AT4G11320 43.895 344 181 4 3 338 22 361 8.73e-99 296
MS.gene055760.t1 AT4G23520 42.319 345 190 7 1 338 9 351 6.13e-98 294
MS.gene055760.t1 AT1G09850 48.065 310 151 4 35 337 28 334 3.50e-97 295
MS.gene055760.t1 AT2G34080 44.000 350 176 7 1 336 1 344 2.02e-94 285
MS.gene055760.t1 AT1G29080 43.188 345 175 10 5 336 9 345 2.25e-91 277
MS.gene055760.t1 AT1G29090 41.739 345 180 9 5 336 18 354 2.31e-85 262
MS.gene055760.t1 AT3G43960 42.470 332 179 8 16 337 18 347 3.55e-83 257
MS.gene055760.t1 AT4G35350 48.763 283 127 6 6 272 7 287 4.91e-80 246
MS.gene055760.t1 AT3G19400 49.597 248 115 7 26 266 34 278 2.35e-73 229
MS.gene055760.t1 AT1G29110 38.081 344 182 8 5 336 9 333 3.34e-72 227
MS.gene055760.t1 AT5G60360 43.607 305 158 8 39 336 59 356 3.72e-71 225
MS.gene055760.t1 AT3G45310 42.623 305 161 8 39 336 59 356 1.23e-70 224
MS.gene055760.t1 AT3G48350 45.390 282 138 6 1 271 1 277 2.09e-70 221
MS.gene055760.t1 AT5G60360 42.951 305 159 8 39 336 59 355 9.25e-69 219
MS.gene055760.t1 AT3G45310 42.295 305 161 8 39 336 59 355 1.12e-68 219
MS.gene055760.t1 AT5G60360 43.860 285 150 7 39 316 59 340 7.00e-67 214
MS.gene055760.t1 AT4G39090 37.171 304 169 7 32 315 42 343 6.52e-61 199
MS.gene055760.t1 AT2G21430 34.320 338 191 9 5 315 7 340 2.75e-59 195
MS.gene055760.t1 AT3G54940 36.601 306 164 8 36 317 48 347 5.89e-57 189
MS.gene055760.t1 AT4G16190 36.570 309 172 8 39 328 55 358 9.69e-52 176
MS.gene055760.t1 AT3G54940 36.957 230 132 4 36 253 48 276 1.09e-42 149
MS.gene055760.t1 AT1G02305 30.576 278 149 13 84 328 67 333 1.67e-24 102
MS.gene055760.t1 AT4G01610 28.261 276 158 12 84 328 64 330 1.62e-23 100
MS.gene055760.t1 AT4G01610 27.536 276 160 12 84 328 64 330 1.45e-21 94.4
MS.gene055760.t1 AT1G02300 27.483 302 147 14 84 328 64 350 1.78e-16 80.1
MS.gene055760.t1 AT2G22160 40.449 89 49 1 55 139 10 98 6.10e-14 67.8

Find 67 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAAAGAATATCCTTATA+CGG 0.263303 2.1:+10056508 MS.gene055760:CDS
TAATGTTATAGTTGTCTTCA+TGG 0.274993 2.1:-10055505 None:intergenic
GCATTGTTATACTCAATCTA+TGG 0.301011 2.1:+10055529 MS.gene055760:CDS
TTACCGTCTCTTCCCGTATA+AGG 0.345193 2.1:-10056521 None:intergenic
TTCGTGCACAAACAGAATTC+AGG 0.347756 2.1:+10055823 MS.gene055760:CDS
GAGTTCAAAAGCAGCTATCT+AGG 0.369554 2.1:+10055786 MS.gene055760:CDS
GGCAAATGACTGGGGTGAAT+CGG 0.383051 2.1:+10056805 MS.gene055760:CDS
CATGCTGCTTAATGCTTGAC+AGG 0.390203 2.1:-10056899 None:intergenic
TATTCAAAAGGTGTCTTCTC+TGG 0.393618 2.1:+10056692 MS.gene055760:CDS
CTATATACTGAACATTTGAT+TGG 0.394077 2.1:-10055695 None:intergenic
GTTGGGTATGGAGAAGAATA+TGG 0.396624 2.1:+10056752 MS.gene055760:CDS
GTCTCCATTGCAACTGATGC+TGG 0.400337 2.1:+10056650 MS.gene055760:CDS
ATTGGATTGTGAAGAATTCA+TGG 0.401875 2.1:+10056783 MS.gene055760:CDS
AACCATGGCATGACTATAGT+TGG 0.415037 2.1:+10056734 MS.gene055760:CDS
AGAATTCATGGGCAAATGAC+TGG 0.416096 2.1:+10056795 MS.gene055760:CDS
TCAGCAGTGGCAGCTGTAGA+AGG 0.416880 2.1:+10056338 MS.gene055760:CDS
AAGAATATGGTGAAAAGTAT+TGG 0.423887 2.1:+10056765 MS.gene055760:CDS
GGCATCAACAAGATCAAAAC+AGG 0.429365 2.1:+10056359 MS.gene055760:CDS
GCAAATGACTGGGGTGAATC+GGG 0.433050 2.1:+10056806 MS.gene055760:CDS
TACCTCTTCTTCATGACTGC+AGG 0.434573 2.1:-10055600 None:intergenic
CTTACAAGCTCAAAGACAAC+AGG 0.445738 2.1:+10055742 MS.gene055760:CDS
AACTACCGAAAAGCATAGAT+TGG 0.448513 2.1:+10055862 MS.gene055760:CDS
ACTTGATGCAGGAAGTTGTT+GGG 0.455181 2.1:+10056310 MS.gene055760:intron
TTACAGAGACAAAGAAGAAT+GGG 0.483128 2.1:+10055653 MS.gene055760:CDS
GCATCAGTTGCAATGGAGAC+AGG 0.486545 2.1:-10056647 None:intergenic
CAGGATGAAGCGTGATACTA+AGG 0.488875 2.1:+10056835 MS.gene055760:CDS
AGCATAGATTGGAGAAAGAA+AGG 0.490600 2.1:+10055873 MS.gene055760:CDS
GGGGTGAATCGGGTTATGTC+AGG 0.495291 2.1:+10056816 MS.gene055760:CDS
ATTACAGAGACAAAGAAGAA+TGG 0.495586 2.1:+10055652 MS.gene055760:CDS
ATAGATTGTGATACTAAAAG+TGG 0.511221 2.1:+10056413 MS.gene055760:CDS
AACTTGATGCAGGAAGTTGT+TGG 0.521381 2.1:+10056309 MS.gene055760:intron
GGCATGACTATAGTTGGGTA+TGG 0.523474 2.1:+10056740 MS.gene055760:CDS
ACCATGGCATGACTATAGTT+GGG 0.527315 2.1:+10056735 MS.gene055760:CDS
AACAATGCTGTAACTATAAG+CGG 0.529987 2.1:+10056566 MS.gene055760:CDS
GTTACACACGTCAAAGATCA+AGG 0.535305 2.1:+10055900 MS.gene055760:CDS
GCTAAAGAATATCCTTATAC+GGG 0.537674 2.1:+10056509 MS.gene055760:CDS
ACCTCCAGCATCAGTTGCAA+TGG 0.538125 2.1:-10056654 None:intergenic
CTATAGTCATGCCATGGTTG+AGG 0.539074 2.1:-10056730 None:intergenic
GAATTCATGGGCAAATGACT+GGG 0.555476 2.1:+10056796 MS.gene055760:CDS
GGGAACGAAGGCTGCGAAGG+TGG 0.557973 2.1:+10056434 MS.gene055760:CDS
GAAACATGGCTGAAACGATA+CGG 0.571747 2.1:+10055624 MS.gene055760:CDS
ATCCTGCAGTCATGAAGAAG+AGG 0.579274 2.1:+10055598 MS.gene055760:CDS
GGTGTCTTCTCTGGAAGTTG+TGG 0.581965 2.1:+10056701 MS.gene055760:CDS
AGTGGGAACGAAGGCTGCGA+AGG 0.593884 2.1:+10056431 MS.gene055760:CDS
TTGGATTGTGAAGAATTCAT+GGG 0.600522 2.1:+10056784 MS.gene055760:CDS
ATAAGGATATTCTTTAGCAG+TGG 0.604194 2.1:-10056504 None:intergenic
CTTCTCTGGAAGTTGTGGAA+AGG 0.605603 2.1:+10056706 MS.gene055760:CDS
TATCCTTATACGGGAAGAGA+CGG 0.606393 2.1:+10056518 MS.gene055760:CDS
CGTGATACTAAGGATAAAGA+CGG 0.610192 2.1:+10056845 MS.gene055760:CDS
TTGTTGGGCATTCTCAGCAG+TGG 0.614237 2.1:+10056325 MS.gene055760:CDS
GACAGGGTATGTAGCATCCA+CGG 0.614493 2.1:-10056882 None:intergenic
CGGGACTTGTGGCATTGCCG+TGG 0.626460 2.1:+10056865 MS.gene055760:CDS
AAGGATAAAGACGGGACTTG+TGG 0.629104 2.1:+10056854 MS.gene055760:CDS
TGAAGAAGAGGTATGAAACA+TGG 0.632545 2.1:+10055610 MS.gene055760:CDS
TCTGTTTGTGCACGAAACCG+AGG 0.636565 2.1:-10055816 None:intergenic
TAGATTGTGATACTAAAAGT+GGG 0.640736 2.1:+10056414 MS.gene055760:CDS
GAATTCAGGTATCATAAACA+TGG 0.645354 2.1:+10055837 MS.gene055760:CDS
ACCCAACTATAGTCATGCCA+TGG 0.645927 2.1:-10056736 None:intergenic
GTGATACTAAGGATAAAGAC+GGG 0.649998 2.1:+10056846 MS.gene055760:CDS
GTCAAAGATCAAGGCCATTG+TGG 0.656255 2.1:+10055909 MS.gene055760:CDS
TTTGCAATAAACTACCACAA+TGG 0.657523 2.1:-10055923 None:intergenic
AAGAGACGGTAAGTGTAACA+AGG 0.663083 2.1:+10056532 MS.gene055760:CDS
TGTGGAAAGGACCTCAACCA+TGG 0.667027 2.1:+10056719 MS.gene055760:CDS
ATGCTGCTTAATGCTTGACA+GGG 0.670927 2.1:-10056898 None:intergenic
GATACTAAAAGTGGGAACGA+AGG 0.673528 2.1:+10056422 MS.gene055760:CDS
TCCATTGCAACTGATGCTGG+AGG 0.678137 2.1:+10056653 MS.gene055760:CDS
AATTCATGGGCAAATGACTG+GGG 0.692239 2.1:+10056797 MS.gene055760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGAAATTTATGTTTT+GGG + chr2.1:10056261-10056280 MS.gene055760:intron 10.0%
!!! AAATGAATAAACTTTTTTTG+AGG - chr2.1:10055977-10055996 None:intergenic 15.0%
!!! CATTTTTGAAATTTATGTTT+TGG + chr2.1:10056260-10056279 MS.gene055760:intron 15.0%
!!! GCATTTCAATTTTATTCAAA+AGG + chr2.1:10056680-10056699 MS.gene055760:CDS 20.0%
! ATAGATTGTGATACTAAAAG+TGG + chr2.1:10056413-10056432 MS.gene055760:CDS 25.0%
! CTATATACTGAACATTTGAT+TGG - chr2.1:10055698-10055717 None:intergenic 25.0%
! TAGATTGTGATACTAAAAGT+GGG + chr2.1:10056414-10056433 MS.gene055760:CDS 25.0%
! TGCTAAAGAATATCCTTATA+CGG + chr2.1:10056508-10056527 MS.gene055760:CDS 25.0%
! TTCAACTACATCAAAAAACA+CGG + chr2.1:10056473-10056492 MS.gene055760:CDS 25.0%
!! AAGAATATGGTGAAAAGTAT+TGG + chr2.1:10056765-10056784 MS.gene055760:CDS 25.0%
AACAATGCTGTAACTATAAG+CGG + chr2.1:10056566-10056585 MS.gene055760:CDS 30.0%
ATAAGGATATTCTTTAGCAG+TGG - chr2.1:10056507-10056526 None:intergenic 30.0%
ATTACAGAGACAAAGAAGAA+TGG + chr2.1:10055652-10055671 MS.gene055760:CDS 30.0%
ATTGGATTGTGAAGAATTCA+TGG + chr2.1:10056783-10056802 MS.gene055760:CDS 30.0%
GAAAATAGTTACTTACCTTG+AGG + chr2.1:10056154-10056173 MS.gene055760:intron 30.0%
GAATTCAGGTATCATAAACA+TGG + chr2.1:10055837-10055856 MS.gene055760:CDS 30.0%
GCATTGTTATACTCAATCTA+TGG + chr2.1:10055529-10055548 MS.gene055760:CDS 30.0%
GCTAAAGAATATCCTTATAC+GGG + chr2.1:10056509-10056528 MS.gene055760:CDS 30.0%
TGTTAAGTAGTAATTCCTCA+AGG - chr2.1:10056172-10056191 None:intergenic 30.0%
TTACAGAGACAAAGAAGAAT+GGG + chr2.1:10055653-10055672 MS.gene055760:CDS 30.0%
TTGGATTGTGAAGAATTCAT+GGG + chr2.1:10056784-10056803 MS.gene055760:CDS 30.0%
TTTGCAATAAACTACCACAA+TGG - chr2.1:10055926-10055945 None:intergenic 30.0%
! TTTCTCCAATCTATGCTTTT+CGG - chr2.1:10055870-10055889 None:intergenic 30.0%
!! ATTTATGTTTTGGGCTGATA+TGG + chr2.1:10056270-10056289 MS.gene055760:intron 30.0%
!!! TACAGCATTGTTTTTAGCTT+TGG - chr2.1:10056558-10056577 None:intergenic 30.0%
AACTACATCAAAAAACACGG+AGG + chr2.1:10056476-10056495 MS.gene055760:CDS 35.0%
ACTACATCAAAAAACACGGA+GGG + chr2.1:10056477-10056496 MS.gene055760:CDS 35.0%
ACTTATCGTTTAGTTGTGCA+TGG - chr2.1:10056059-10056078 None:intergenic 35.0%
AGCATAGATTGGAGAAAGAA+AGG + chr2.1:10055873-10055892 MS.gene055760:CDS 35.0%
CGTGATACTAAGGATAAAGA+CGG + chr2.1:10056845-10056864 MS.gene055760:CDS 35.0%
GTGATACTAAGGATAAAGAC+GGG + chr2.1:10056846-10056865 MS.gene055760:CDS 35.0%
GTTTGTGATATGAACATGAC+AGG + chr2.1:10056101-10056120 MS.gene055760:intron 35.0%
! AACTACCGAAAAGCATAGAT+TGG + chr2.1:10055862-10055881 MS.gene055760:CDS 35.0%
! GAATTCTTTTTGTGCATTGC+AGG - chr2.1:10055573-10055592 None:intergenic 35.0%
! TGAAGAAGAGGTATGAAACA+TGG + chr2.1:10055610-10055629 MS.gene055760:CDS 35.0%
!! TATTCAAAAGGTGTCTTCTC+TGG + chr2.1:10056692-10056711 MS.gene055760:CDS 35.0%
AACCATGGCATGACTATAGT+TGG + chr2.1:10056734-10056753 MS.gene055760:CDS 40.0%
AACTTGATGCAGGAAGTTGT+TGG + chr2.1:10056309-10056328 MS.gene055760:intron 40.0%
AAGAGACGGTAAGTGTAACA+AGG + chr2.1:10056532-10056551 MS.gene055760:CDS 40.0%
AATTCATGGGCAAATGACTG+GGG + chr2.1:10056797-10056816 MS.gene055760:CDS 40.0%
ACCATGGCATGACTATAGTT+GGG + chr2.1:10056735-10056754 MS.gene055760:CDS 40.0%
ACTTGATGCAGGAAGTTGTT+GGG + chr2.1:10056310-10056329 MS.gene055760:intron 40.0%
AGAATTCATGGGCAAATGAC+TGG + chr2.1:10056795-10056814 MS.gene055760:CDS 40.0%
CTTACAAGCTCAAAGACAAC+AGG + chr2.1:10055742-10055761 MS.gene055760:CDS 40.0%
GAAACATGGCTGAAACGATA+CGG + chr2.1:10055624-10055643 MS.gene055760:CDS 40.0%
GAATTCATGGGCAAATGACT+GGG + chr2.1:10056796-10056815 MS.gene055760:CDS 40.0%
GAGTTCAAAAGCAGCTATCT+AGG + chr2.1:10055786-10055805 MS.gene055760:CDS 40.0%
GATACTAAAAGTGGGAACGA+AGG + chr2.1:10056422-10056441 MS.gene055760:CDS 40.0%
GGCATCAACAAGATCAAAAC+AGG + chr2.1:10056359-10056378 MS.gene055760:CDS 40.0%
GTTACACACGTCAAAGATCA+AGG + chr2.1:10055900-10055919 MS.gene055760:CDS 40.0%
GTTGGGTATGGAGAAGAATA+TGG + chr2.1:10056752-10056771 MS.gene055760:CDS 40.0%
TATCCTTATACGGGAAGAGA+CGG + chr2.1:10056518-10056537 MS.gene055760:CDS 40.0%
TTCGTGCACAAACAGAATTC+AGG + chr2.1:10055823-10055842 MS.gene055760:CDS 40.0%
! GCTATCTAGGTTTTCTACCT+CGG + chr2.1:10055799-10055818 MS.gene055760:CDS 40.0%
!! TATGTTTTGGGCTGATATGG+TGG + chr2.1:10056273-10056292 MS.gene055760:intron 40.0%
AAGGATAAAGACGGGACTTG+TGG + chr2.1:10056854-10056873 MS.gene055760:CDS 45.0%
ACCCAACTATAGTCATGCCA+TGG - chr2.1:10056739-10056758 None:intergenic 45.0%
ATCCTGCAGTCATGAAGAAG+AGG + chr2.1:10055598-10055617 MS.gene055760:CDS 45.0%
CAGGATGAAGCGTGATACTA+AGG + chr2.1:10056835-10056854 MS.gene055760:CDS 45.0%
CTATAGTCATGCCATGGTTG+AGG - chr2.1:10056733-10056752 None:intergenic 45.0%
GGCATGACTATAGTTGGGTA+TGG + chr2.1:10056740-10056759 MS.gene055760:CDS 45.0%
GTCAAAGATCAAGGCCATTG+TGG + chr2.1:10055909-10055928 MS.gene055760:CDS 45.0%
TACCTCTTCTTCATGACTGC+AGG - chr2.1:10055603-10055622 None:intergenic 45.0%
TTACCGTCTCTTCCCGTATA+AGG - chr2.1:10056524-10056543 None:intergenic 45.0%
! AGCATTTTCTCATTGCGAGC+AGG - chr2.1:10056605-10056624 None:intergenic 45.0%
! CTTCTCTGGAAGTTGTGGAA+AGG + chr2.1:10056706-10056725 MS.gene055760:CDS 45.0%
! GGTGGTGTTAAACTTGATGC+AGG + chr2.1:10056299-10056318 MS.gene055760:intron 45.0%
! TTTGGGCTGATATGGTGGAA+TGG + chr2.1:10056278-10056297 MS.gene055760:intron 45.0%
ACCTCCAGCATCAGTTGCAA+TGG - chr2.1:10056657-10056676 None:intergenic 50.0%
GACAGGGTATGTAGCATCCA+CGG - chr2.1:10056885-10056904 None:intergenic 50.0%
GCAAATGACTGGGGTGAATC+GGG + chr2.1:10056806-10056825 MS.gene055760:CDS 50.0%
GCATCAGTTGCAATGGAGAC+AGG - chr2.1:10056650-10056669 None:intergenic 50.0%
GGCAAATGACTGGGGTGAAT+CGG + chr2.1:10056805-10056824 MS.gene055760:CDS 50.0%
GTCTCCATTGCAACTGATGC+TGG + chr2.1:10056650-10056669 MS.gene055760:CDS 50.0%
TCCATTGCAACTGATGCTGG+AGG + chr2.1:10056653-10056672 MS.gene055760:CDS 50.0%
TCTGTTTGTGCACGAAACCG+AGG - chr2.1:10055819-10055838 None:intergenic 50.0%
TGTGGAAAGGACCTCAACCA+TGG + chr2.1:10056719-10056738 MS.gene055760:CDS 50.0%
TTGTTGGGCATTCTCAGCAG+TGG + chr2.1:10056325-10056344 MS.gene055760:CDS 50.0%
! GGTGTCTTCTCTGGAAGTTG+TGG + chr2.1:10056701-10056720 MS.gene055760:CDS 50.0%
GGGGTGAATCGGGTTATGTC+AGG + chr2.1:10056816-10056835 MS.gene055760:CDS 55.0%
TCAGCAGTGGCAGCTGTAGA+AGG + chr2.1:10056338-10056357 MS.gene055760:CDS 55.0%
! GGGCTGATATGGTGGAATGG+TGG + chr2.1:10056281-10056300 MS.gene055760:intron 55.0%
AGTGGGAACGAAGGCTGCGA+AGG + chr2.1:10056431-10056450 MS.gene055760:CDS 60.0%
CGGGACTTGTGGCATTGCCG+TGG + chr2.1:10056865-10056884 MS.gene055760:CDS 65.0%
GGGAACGAAGGCTGCGAAGG+TGG + chr2.1:10056434-10056453 MS.gene055760:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 10055507 10056913 10055507 ID=MS.gene055760
chr2.1 mRNA 10055507 10056913 10055507 ID=MS.gene055760.t1;Parent=MS.gene055760
chr2.1 exon 10055507 10055930 10055507 ID=MS.gene055760.t1.exon1;Parent=MS.gene055760.t1
chr2.1 CDS 10055507 10055930 10055507 ID=cds.MS.gene055760.t1;Parent=MS.gene055760.t1
chr2.1 exon 10056321 10056913 10056321 ID=MS.gene055760.t1.exon2;Parent=MS.gene055760.t1
chr2.1 CDS 10056321 10056913 10056321 ID=cds.MS.gene055760.t1;Parent=MS.gene055760.t1
Gene Sequence

>MS.gene055760

ATGAAGACAACTATAACATTAAGCATTGTTATACTCAATCTATGGATAACTGCAAGTGCATGTCCTGCAATGCACAAAAAGAATTCAACTAATCCTGCAGTCATGAAGAAGAGGTATGAAACATGGCTGAAACGATACGGACGACATTACAGAGACAAAGAAGAATGGGAAGTTCGTTTCGACATTTACCAATCAAATGTTCAGTATATAGAGTTCTACAACTCTCAAAACTATTCTTACAAGCTCAAAGACAACAGGTTTGCAGATCTTACTAATGAAGAGTTCAAAAGCAGCTATCTAGGTTTTCTACCTCGGTTTCGTGCACAAACAGAATTCAGGTATCATAAACATGGAGAACTACCGAAAAGCATAGATTGGAGAAAGAAAGGTGCAGTTACACACGTCAAAGATCAAGGCCATTGTGGTAGTTTATTGCAAATCAAGTTTATTAATTTTTTTTTTTTTTGCCTCAAAAAAAGTTTATTCATTTTCTCAAATATTACAGTTTAGCTACTAGTATGCTATGATATATACACAAATCTAGTAGCTCCATGCACAACTAAACGATAAGTCTATACGAACTTTATCTTAAGTGTTTGTGATATGAACATGACAGGATAAATTAGTCTTATAGTTATATCTATAAAGAAAATAGTTACTTACCTTGAGGAATTACTACTTAACAAGTAAATGTATTTGAAGTCTTCTGAAGTTTATCTATTGCTAAGTAGCGAGCTAAAGAGCACGCTTAAACATTTTTGAAATTTATGTTTTGGGCTGATATGGTGGAATGGTGGTGTTAAACTTGATGCAGGAAGTTGTTGGGCATTCTCAGCAGTGGCAGCTGTAGAAGGCATCAACAAGATCAAAACAGGAAATTTAGTTTCTCTATCAGAACAACAGTTGATAGATTGTGATACTAAAAGTGGGAACGAAGGCTGCGAAGGTGGCGACATGTACATAGCATTCAACTACATCAAAAAACACGGAGGGTTAGCCACTGCTAAAGAATATCCTTATACGGGAAGAGACGGTAAGTGTAACAAGGCCAAAGCTAAAAACAATGCTGTAACTATAAGCGGCTACGAAAGTGTACCTGCTCGCAATGAGAAAATGCTTAAAGCTGCAGTTGCTCATCAGCCTGTCTCCATTGCAACTGATGCTGGAGGTTATGCATTTCAATTTTATTCAAAAGGTGTCTTCTCTGGAAGTTGTGGAAAGGACCTCAACCATGGCATGACTATAGTTGGGTATGGAGAAGAATATGGTGAAAAGTATTGGATTGTGAAGAATTCATGGGCAAATGACTGGGGTGAATCGGGTTATGTCAGGATGAAGCGTGATACTAAGGATAAAGACGGGACTTGTGGCATTGCCGTGGATGCTACATACCCTGTCAAGCATTAA
Protein sequence

>MS.gene055760.t1

MKTTITLSIVILNLWITASACPAMHKKNSTNPAVMKKRYETWLKRYGRHYRDKEEWEVRFDIYQSNVQYIEFYNSQNYSYKLKDNRFADLTNEEFKSSYLGFLPRFRAQTEFRYHKHGELPKSIDWRKKGAVTHVKDQGHCGSCWAFSAVAAVEGINKIKTGNLVSLSEQQLIDCDTKSGNEGCEGGDMYIAFNYIKKHGGLATAKEYPYTGRDGKCNKAKAKNNAVTISGYESVPARNEKMLKAAVAHQPVSIATDAGGYAFQFYSKGVFSGSCGKDLNHGMTIVGYGEEYGEKYWIVKNSWANDWGESGYVRMKRDTKDKDGTCGIAVDATYPVKH