Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26853.t1 | ABF18679.1 | 99.4 | 338 | 2 | 0 | 1 | 338 | 1 | 338 | 8.90E-199 | 702.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26853.t1 | Q8RWQ9 | 72.2 | 338 | 89 | 2 | 5 | 338 | 10 | 346 | 3.3e-149 | 529.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26853.t1 | Q1KK73 | 99.4 | 338 | 2 | 0 | 1 | 338 | 1 | 338 | 6.4e-199 | 702.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26853.t1 | MTR_4g125300 | 98.521 | 338 | 5 | 0 | 1 | 338 | 1 | 338 | 0.0 | 701 |
MS.gene26853.t1 | MTR_4g094918 | 43.706 | 286 | 145 | 8 | 57 | 332 | 41 | 320 | 2.26e-69 | 221 |
MS.gene26853.t1 | MTR_3g075390 | 38.841 | 345 | 177 | 10 | 1 | 332 | 1 | 324 | 3.25e-69 | 220 |
MS.gene26853.t1 | MTR_4g047610 | 43.986 | 291 | 148 | 11 | 53 | 334 | 40 | 324 | 2.00e-68 | 218 |
MS.gene26853.t1 | MTR_5g022560 | 42.414 | 290 | 154 | 9 | 53 | 334 | 41 | 325 | 1.00e-67 | 216 |
MS.gene26853.t1 | MTR_1g107550 | 42.122 | 311 | 165 | 9 | 31 | 332 | 30 | 334 | 1.28e-67 | 219 |
MS.gene26853.t1 | MTR_4g079770 | 43.007 | 286 | 149 | 10 | 57 | 334 | 47 | 326 | 1.52e-67 | 216 |
MS.gene26853.t1 | MTR_4g079470 | 43.007 | 286 | 149 | 10 | 57 | 334 | 47 | 326 | 1.60e-67 | 216 |
MS.gene26853.t1 | MTR_4g079800 | 42.606 | 284 | 149 | 10 | 57 | 332 | 47 | 324 | 8.95e-66 | 211 |
MS.gene26853.t1 | MTR_4g080700 | 38.033 | 305 | 176 | 8 | 34 | 334 | 26 | 321 | 1.63e-65 | 210 |
MS.gene26853.t1 | MTR_3g116080 | 40.767 | 287 | 159 | 6 | 51 | 332 | 47 | 327 | 2.89e-65 | 210 |
MS.gene26853.t1 | MTR_4g079440 | 41.549 | 284 | 159 | 5 | 51 | 332 | 46 | 324 | 3.22e-65 | 209 |
MS.gene26853.t1 | MTR_4g080730 | 39.649 | 285 | 164 | 6 | 53 | 334 | 42 | 321 | 5.50e-65 | 209 |
MS.gene26853.t1 | MTR_2g015920 | 34.311 | 341 | 205 | 7 | 6 | 336 | 11 | 342 | 5.58e-65 | 210 |
MS.gene26853.t1 | MTR_1g018840 | 38.710 | 341 | 181 | 11 | 5 | 332 | 15 | 340 | 9.49e-64 | 209 |
MS.gene26853.t1 | MTR_1g018840 | 38.710 | 341 | 181 | 11 | 5 | 332 | 15 | 340 | 1.07e-63 | 209 |
MS.gene26853.t1 | MTR_4g071060 | 38.202 | 356 | 180 | 11 | 6 | 338 | 8 | 346 | 1.12e-63 | 206 |
MS.gene26853.t1 | MTR_3g102220 | 42.561 | 289 | 146 | 10 | 57 | 332 | 59 | 340 | 5.80e-63 | 207 |
MS.gene26853.t1 | MTR_4g107930 | 41.379 | 290 | 157 | 9 | 53 | 334 | 42 | 326 | 7.95e-63 | 203 |
MS.gene26853.t1 | MTR_3g112430 | 40.893 | 291 | 156 | 8 | 51 | 331 | 36 | 320 | 1.58e-62 | 206 |
MS.gene26853.t1 | MTR_2g090890 | 40.845 | 284 | 160 | 6 | 51 | 332 | 39 | 316 | 1.61e-60 | 197 |
MS.gene26853.t1 | MTR_4g104370 | 42.294 | 279 | 144 | 8 | 64 | 332 | 52 | 323 | 2.04e-60 | 197 |
MS.gene26853.t1 | MTR_1g023210 | 38.182 | 330 | 173 | 10 | 28 | 338 | 33 | 350 | 3.20e-60 | 197 |
MS.gene26853.t1 | MTR_2g016270 | 38.699 | 292 | 157 | 7 | 51 | 337 | 51 | 325 | 5.32e-59 | 197 |
MS.gene26853.t1 | MTR_2g075830 | 41.197 | 284 | 155 | 9 | 57 | 334 | 45 | 322 | 7.26e-59 | 193 |
MS.gene26853.t1 | MTR_4g080360 | 36.977 | 311 | 171 | 12 | 34 | 332 | 24 | 321 | 6.84e-58 | 191 |
MS.gene26853.t1 | MTR_2g016180 | 38.305 | 295 | 169 | 7 | 51 | 337 | 51 | 340 | 1.44e-57 | 194 |
MS.gene26853.t1 | MTR_2g015930 | 32.070 | 343 | 208 | 8 | 6 | 336 | 13 | 342 | 3.15e-55 | 184 |
MS.gene26853.t1 | MTR_1g094135 | 38.312 | 308 | 163 | 9 | 51 | 338 | 56 | 356 | 5.42e-55 | 184 |
MS.gene26853.t1 | MTR_2g015850 | 41.281 | 281 | 141 | 12 | 63 | 331 | 74 | 342 | 7.30e-54 | 181 |
MS.gene26853.t1 | MTR_2g083930 | 36.482 | 307 | 172 | 10 | 41 | 332 | 25 | 323 | 2.47e-53 | 179 |
MS.gene26853.t1 | MTR_7g078600 | 38.596 | 285 | 163 | 8 | 51 | 332 | 42 | 317 | 6.12e-53 | 177 |
MS.gene26853.t1 | MTR_7g079230 | 39.789 | 284 | 150 | 10 | 57 | 332 | 45 | 315 | 1.23e-52 | 177 |
MS.gene26853.t1 | MTR_4g065077 | 33.828 | 337 | 207 | 8 | 1 | 329 | 3 | 331 | 4.87e-51 | 173 |
MS.gene26853.t1 | MTR_2g067900 | 35.577 | 312 | 167 | 11 | 44 | 336 | 13 | 309 | 2.10e-45 | 157 |
MS.gene26853.t1 | MTR_4g072790 | 33.235 | 340 | 182 | 9 | 4 | 338 | 11 | 310 | 6.22e-45 | 156 |
MS.gene26853.t1 | MTR_8g086470 | 32.132 | 333 | 202 | 8 | 1 | 329 | 19 | 331 | 1.67e-44 | 156 |
MS.gene26853.t1 | MTR_2g067560 | 34.727 | 311 | 157 | 11 | 51 | 332 | 16 | 309 | 2.96e-43 | 159 |
MS.gene26853.t1 | MTR_4g073660 | 33.333 | 345 | 179 | 11 | 4 | 338 | 10 | 313 | 5.70e-43 | 151 |
MS.gene26853.t1 | MTR_4g072340 | 32.754 | 345 | 181 | 10 | 4 | 338 | 11 | 314 | 1.50e-42 | 150 |
MS.gene26853.t1 | MTR_2g064475 | 33.333 | 339 | 161 | 14 | 41 | 332 | 10 | 330 | 5.95e-40 | 144 |
MS.gene26853.t1 | MTR_1g023810 | 39.806 | 206 | 114 | 6 | 133 | 335 | 49 | 247 | 2.77e-35 | 129 |
MS.gene26853.t1 | MTR_2g066980 | 30.745 | 322 | 156 | 12 | 34 | 332 | 20 | 297 | 5.66e-35 | 130 |
MS.gene26853.t1 | MTR_7g111060 | 32.353 | 306 | 169 | 11 | 65 | 338 | 29 | 328 | 6.61e-34 | 128 |
MS.gene26853.t1 | MTR_7g078630 | 33.700 | 273 | 141 | 8 | 44 | 305 | 699 | 942 | 1.20e-31 | 125 |
MS.gene26853.t1 | MTR_7g111050 | 32.500 | 320 | 178 | 15 | 49 | 338 | 14 | 325 | 5.84e-31 | 120 |
MS.gene26853.t1 | MTR_7g111050 | 30.169 | 295 | 171 | 13 | 48 | 314 | 9 | 296 | 3.46e-20 | 89.7 |
MS.gene26853.t1 | MTR_1g025450 | 32.203 | 177 | 94 | 5 | 133 | 306 | 55 | 208 | 3.72e-18 | 85.9 |
MS.gene26853.t1 | MTR_3g029560 | 30.303 | 198 | 108 | 7 | 145 | 337 | 50 | 222 | 1.90e-16 | 77.8 |
MS.gene26853.t1 | MTR_7g078310 | 36.765 | 136 | 80 | 3 | 92 | 225 | 115 | 246 | 2.34e-16 | 78.2 |
MS.gene26853.t1 | MTR_2g015840 | 31.902 | 163 | 94 | 5 | 38 | 186 | 20 | 179 | 5.70e-16 | 77.4 |
MS.gene26853.t1 | MTR_2g015840 | 45.263 | 95 | 46 | 4 | 238 | 331 | 161 | 250 | 1.61e-14 | 73.2 |
MS.gene26853.t1 | MTR_8g087510 | 35.115 | 131 | 79 | 4 | 175 | 305 | 24 | 148 | 2.48e-15 | 73.6 |
MS.gene26853.t1 | MTR_7g078580 | 45.122 | 82 | 39 | 4 | 252 | 332 | 5 | 81 | 8.08e-15 | 70.5 |
MS.gene26853.t1 | MTR_2g016380 | 34.259 | 108 | 67 | 3 | 231 | 337 | 16 | 120 | 4.44e-14 | 71.2 |
MS.gene26853.t1 | MTR_2g047960 | 46.250 | 80 | 42 | 1 | 142 | 221 | 7 | 85 | 9.27e-14 | 67.0 |
MS.gene26853.t1 | MTR_7g079130 | 48.611 | 72 | 31 | 4 | 263 | 332 | 10 | 77 | 5.23e-13 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26853.t1 | AT3G45310 | 71.930 | 342 | 90 | 2 | 1 | 338 | 7 | 346 | 0.0 | 533 |
MS.gene26853.t1 | AT3G45310 | 71.930 | 342 | 90 | 2 | 1 | 338 | 7 | 346 | 0.0 | 533 |
MS.gene26853.t1 | AT5G60360 | 74.613 | 323 | 78 | 1 | 20 | 338 | 24 | 346 | 0.0 | 521 |
MS.gene26853.t1 | AT5G60360 | 74.613 | 323 | 78 | 1 | 20 | 338 | 24 | 346 | 0.0 | 521 |
MS.gene26853.t1 | AT5G60360 | 74.613 | 323 | 78 | 1 | 20 | 338 | 24 | 346 | 0.0 | 520 |
MS.gene26853.t1 | AT5G43060 | 47.037 | 270 | 131 | 8 | 67 | 331 | 70 | 332 | 2.97e-69 | 224 |
MS.gene26853.t1 | AT1G47128 | 39.053 | 338 | 182 | 11 | 5 | 331 | 7 | 331 | 3.15e-69 | 223 |
MS.gene26853.t1 | AT3G48340 | 43.571 | 280 | 141 | 7 | 64 | 332 | 50 | 323 | 9.81e-69 | 219 |
MS.gene26853.t1 | AT3G54940 | 38.268 | 358 | 190 | 9 | 1 | 338 | 6 | 352 | 7.11e-67 | 214 |
MS.gene26853.t1 | AT5G50260 | 38.938 | 339 | 176 | 10 | 6 | 334 | 7 | 324 | 7.13e-66 | 212 |
MS.gene26853.t1 | AT4G35350 | 42.708 | 288 | 153 | 8 | 51 | 332 | 51 | 332 | 2.36e-65 | 210 |
MS.gene26853.t1 | AT4G36880 | 42.806 | 278 | 141 | 9 | 67 | 332 | 69 | 340 | 4.82e-65 | 210 |
MS.gene26853.t1 | AT4G11310 | 37.758 | 339 | 181 | 8 | 6 | 331 | 10 | 331 | 5.46e-65 | 209 |
MS.gene26853.t1 | AT3G19400 | 43.617 | 282 | 144 | 9 | 60 | 332 | 53 | 328 | 1.08e-64 | 209 |
MS.gene26853.t1 | AT1G06260 | 39.339 | 333 | 177 | 9 | 7 | 334 | 12 | 324 | 1.33e-64 | 208 |
MS.gene26853.t1 | AT1G20850 | 41.379 | 290 | 155 | 8 | 51 | 332 | 51 | 333 | 3.63e-64 | 207 |
MS.gene26853.t1 | AT4G11320 | 39.542 | 306 | 159 | 6 | 40 | 331 | 45 | 338 | 6.34e-64 | 207 |
MS.gene26853.t1 | AT4G11320 | 39.542 | 306 | 159 | 6 | 40 | 331 | 45 | 338 | 6.34e-64 | 207 |
MS.gene26853.t1 | AT5G45890 | 41.176 | 306 | 156 | 10 | 40 | 332 | 31 | 325 | 1.91e-62 | 202 |
MS.gene26853.t1 | AT4G23520 | 40.000 | 300 | 161 | 10 | 51 | 338 | 47 | 339 | 2.36e-62 | 202 |
MS.gene26853.t1 | AT1G09850 | 39.931 | 288 | 161 | 7 | 51 | 332 | 32 | 313 | 1.79e-61 | 202 |
MS.gene26853.t1 | AT3G19390 | 42.500 | 280 | 148 | 10 | 60 | 332 | 52 | 325 | 5.78e-61 | 202 |
MS.gene26853.t1 | AT3G48350 | 38.439 | 346 | 173 | 13 | 4 | 334 | 5 | 325 | 3.65e-60 | 197 |
MS.gene26853.t1 | AT2G21430 | 36.937 | 333 | 183 | 8 | 28 | 338 | 20 | 347 | 2.52e-59 | 195 |
MS.gene26853.t1 | AT4G39090 | 38.679 | 318 | 166 | 9 | 40 | 338 | 43 | 350 | 3.21e-58 | 192 |
MS.gene26853.t1 | AT1G29080 | 40.268 | 298 | 155 | 11 | 57 | 338 | 45 | 335 | 1.67e-57 | 190 |
MS.gene26853.t1 | AT3G43960 | 41.696 | 283 | 151 | 10 | 59 | 332 | 49 | 326 | 1.06e-56 | 189 |
MS.gene26853.t1 | AT1G29090 | 37.353 | 340 | 173 | 14 | 5 | 331 | 21 | 333 | 1.73e-56 | 187 |
MS.gene26853.t1 | AT2G34080 | 39.465 | 299 | 157 | 13 | 46 | 332 | 38 | 324 | 5.65e-55 | 183 |
MS.gene26853.t1 | AT4G16190 | 36.637 | 333 | 181 | 11 | 26 | 338 | 34 | 356 | 3.87e-54 | 182 |
MS.gene26853.t1 | AT2G27420 | 38.225 | 293 | 158 | 11 | 57 | 332 | 41 | 327 | 1.28e-51 | 174 |
MS.gene26853.t1 | AT3G49340 | 37.457 | 291 | 162 | 9 | 53 | 331 | 37 | 319 | 1.56e-51 | 174 |
MS.gene26853.t1 | AT4G35350 | 43.096 | 239 | 127 | 7 | 51 | 283 | 51 | 286 | 3.55e-50 | 169 |
MS.gene26853.t1 | AT3G54940 | 37.589 | 282 | 157 | 5 | 1 | 271 | 6 | 279 | 1.33e-48 | 165 |
MS.gene26853.t1 | AT1G29110 | 36.634 | 303 | 156 | 11 | 53 | 338 | 40 | 323 | 1.04e-47 | 164 |
MS.gene26853.t1 | AT3G19400 | 42.358 | 229 | 121 | 7 | 60 | 279 | 53 | 279 | 4.10e-46 | 158 |
MS.gene26853.t1 | AT3G48350 | 36.577 | 298 | 154 | 10 | 4 | 287 | 5 | 281 | 4.15e-43 | 150 |
MS.gene26853.t1 | AT1G02305 | 33.564 | 289 | 156 | 13 | 80 | 338 | 49 | 331 | 5.12e-33 | 125 |
MS.gene26853.t1 | AT1G02300 | 36.967 | 211 | 101 | 8 | 152 | 338 | 146 | 348 | 6.08e-30 | 118 |
MS.gene26853.t1 | AT4G01610 | 31.511 | 311 | 173 | 13 | 59 | 338 | 27 | 328 | 1.11e-29 | 117 |
MS.gene26853.t1 | AT4G01610 | 30.868 | 311 | 175 | 13 | 59 | 338 | 27 | 328 | 1.45e-27 | 111 |
Find 84 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGGATCATGCTGGACATTC+AGG | 0.322819 | 8.3:+4699883 | MS.gene26853:CDS |
CTGCAGCACAACTGGAGCTT+TGG | 0.347290 | 8.3:+4700425 | MS.gene26853:intron |
TATCCCTACACTGGACAAAA+TGG | 0.356510 | 8.3:+4700609 | MS.gene26853:CDS |
GCTCAATCCGGCGGCGGCGG+TGG | 0.358129 | 8.3:-4698731 | None:intergenic |
ACTGTCATCTGCAGCACAAC+TGG | 0.364159 | 8.3:+4700417 | MS.gene26853:intron |
TGGCTACTTCAAAATGGAAA+TGG | 0.373295 | 8.3:+4701426 | MS.gene26853:CDS |
TGACCATGGCTACTTCAAAA+TGG | 0.374145 | 8.3:+4701420 | MS.gene26853:CDS |
GTTATTGTATGCAGAAAGAT+TGG | 0.377542 | 8.3:+4699817 | MS.gene26853:intron |
AGGTATAGTCAGTGAAGTTA+AGG | 0.383706 | 8.3:+4699848 | MS.gene26853:CDS |
CATGGAAAAGCAGCTTCTTC+AGG | 0.383850 | 8.3:+4698789 | MS.gene26853:CDS |
ACCTCAAATGCCACACTAAC+GGG | 0.384523 | 8.3:-4701066 | None:intergenic |
GCTGTTCTTGCTGTTGGGTA+TGG | 0.386199 | 8.3:+4701340 | MS.gene26853:CDS |
TGCGTGGCCACCGCCGCCGC+CGG | 0.394631 | 8.3:+4698724 | MS.gene26853:CDS |
GGCTACTTCAAAATGGAAAT+GGG | 0.395439 | 8.3:+4701427 | MS.gene26853:CDS |
AAACTCATGGGGAGGTGAAT+GGG | 0.395979 | 8.3:+4701396 | MS.gene26853:CDS |
TTTAATGTATTCAAAGGCTT+GGG | 0.400464 | 8.3:-4700556 | None:intergenic |
AATCATGCTGTTCTTGCTGT+TGG | 0.406771 | 8.3:+4701334 | MS.gene26853:CDS |
AACGTTGCTGTTCAAGTCCT+TGG | 0.409619 | 8.3:+4700654 | MS.gene26853:CDS |
TTCAATAACTTTGGCTGCAA+TGG | 0.411469 | 8.3:+4700522 | MS.gene26853:CDS |
ATTTAATGTATTCAAAGGCT+TGG | 0.415754 | 8.3:-4700557 | None:intergenic |
TTGAAGATGGTGTACCATAT+TGG | 0.416176 | 8.3:+4701365 | MS.gene26853:CDS |
TCCCGTTAGTGTGGCATTTG+AGG | 0.421683 | 8.3:+4701065 | MS.gene26853:CDS |
ATCATGCTGTTCTTGCTGTT+GGG | 0.423797 | 8.3:+4701335 | MS.gene26853:CDS |
TCCACGACTCCAATCCTATT+CGG | 0.426027 | 8.3:+4698755 | MS.gene26853:CDS |
AATAACTTTGGCTGCAATGG+TGG | 0.455761 | 8.3:+4700525 | MS.gene26853:CDS |
CAGAAAGATTGGAGGAAAGA+AGG | 0.463829 | 8.3:+4699828 | MS.gene26853:intron |
AAAACTCATGGGGAGGTGAA+TGG | 0.463951 | 8.3:+4701395 | MS.gene26853:CDS |
CAGCAGCTAGTGGACTGTGC+TGG | 0.465005 | 8.3:+4700495 | MS.gene26853:CDS |
ATGTCGGAGACCATCCGAAT+AGG | 0.466748 | 8.3:-4698769 | None:intergenic |
TCAGCTTACGCACAGGCCTT+CGG | 0.468118 | 8.3:+4700450 | MS.gene26853:CDS |
GCTGGTGCTTTCAATAACTT+TGG | 0.475033 | 8.3:+4700513 | MS.gene26853:CDS |
GAAGCTCAATCCGGCGGCGG+CGG | 0.484936 | 8.3:-4698734 | None:intergenic |
AATTGTTCTGCTACTCTCAA+GGG | 0.485400 | 8.3:+4699126 | MS.gene26853:CDS |
GTCAGTGAAGTTAAGGATCA+AGG | 0.494471 | 8.3:+4699855 | MS.gene26853:CDS |
TCTTTCTGAGCAGCAGCTAG+TGG | 0.496747 | 8.3:+4700485 | MS.gene26853:CDS |
ATTGTATTTAATGTATTCAA+AGG | 0.503015 | 8.3:-4700562 | None:intergenic |
GCTCGCTTTGCTAACAGATA+CGG | 0.506701 | 8.3:+4698844 | MS.gene26853:CDS |
TCTACTAATAAGAAACGTCT+TGG | 0.509184 | 8.3:+4698940 | MS.gene26853:CDS |
AAGGCCACTGCGGATCATGC+TGG | 0.516867 | 8.3:+4699874 | MS.gene26853:CDS |
CACCTCAAATGCCACACTAA+CGG | 0.517450 | 8.3:-4701067 | None:intergenic |
GGAGACCATCCGAATAGGAT+TGG | 0.519715 | 8.3:-4698764 | None:intergenic |
GACTTCAGATTATACAAGAA+AGG | 0.522674 | 8.3:+4701096 | MS.gene26853:CDS |
GAACAACATCGGTAATCCTA+TGG | 0.528082 | 8.3:-4699152 | None:intergenic |
TGTTGCTGACATACCTCGGC+AGG | 0.528653 | 8.3:-4699177 | None:intergenic |
AAATTGTTCTGCTACTCTCA+AGG | 0.532831 | 8.3:+4699125 | MS.gene26853:CDS |
GGAGTCGTGGAAGCTCAATC+CGG | 0.546963 | 8.3:-4698743 | None:intergenic |
CTACTCTCAAGGGGAACCAT+AGG | 0.552146 | 8.3:+4699136 | MS.gene26853:CDS |
TATTCGGATGGTCTCCGACA+TGG | 0.552839 | 8.3:+4698771 | MS.gene26853:CDS |
AAACGTCTTGGTTACACTCT+CGG | 0.554881 | 8.3:+4698952 | MS.gene26853:CDS |
CGATGTTGTTCTTCCTGCCG+AGG | 0.557356 | 8.3:+4699164 | MS.gene26853:CDS |
ATAACTTTGGCTGCAATGGT+GGG | 0.558078 | 8.3:+4700526 | MS.gene26853:CDS |
GTGGAAGCTCAATCCGGCGG+CGG | 0.560054 | 8.3:-4698737 | None:intergenic |
TCCGAATAGGATTGGAGTCG+TGG | 0.561061 | 8.3:-4698756 | None:intergenic |
AACTCATGGGGAGGTGAATG+GGG | 0.564340 | 8.3:+4701397 | MS.gene26853:CDS |
ATTGTATGCAGAAAGATTGG+AGG | 0.565149 | 8.3:+4699820 | MS.gene26853:intron |
AAGCAGCTTCTTCAGGTCAT+CGG | 0.576623 | 8.3:+4698796 | MS.gene26853:CDS |
ATGTATTCAAAGGCTTGGGA+TGG | 0.579188 | 8.3:-4700552 | None:intergenic |
TCTACGCTTCATTTCATCAA+CGG | 0.582909 | 8.3:-4698881 | None:intergenic |
AAGAGAGATATTCTTTCCGA+AGG | 0.583318 | 8.3:-4700466 | None:intergenic |
CGTTAGTGTGGCATTTGAGG+TGG | 0.585108 | 8.3:+4701068 | MS.gene26853:CDS |
CCACGCAGAAGAAAACGATA+AGG | 0.585441 | 8.3:-4698708 | None:intergenic |
CAATGGTGGCCTTGAGACAG+AGG | 0.588490 | 8.3:+4700581 | MS.gene26853:CDS |
TTTGAATACATTAAATACAA+TGG | 0.591214 | 8.3:+4700564 | MS.gene26853:CDS |
TTTGGAGTCAGCTTACGCAC+AGG | 0.591422 | 8.3:+4700443 | MS.gene26853:CDS |
GATATGCTTCCTCTGTCTCA+AGG | 0.591795 | 8.3:-4700590 | None:intergenic |
GTTGGGTATGGAATTGAAGA+TGG | 0.599047 | 8.3:+4701352 | MS.gene26853:CDS |
GAATACATTAAATACAATGG+TGG | 0.602840 | 8.3:+4700567 | MS.gene26853:CDS |
GAGGAAGCATATCCCTACAC+TGG | 0.603850 | 8.3:+4700600 | MS.gene26853:CDS |
AACTTGTGGCAACACACCCA+TGG | 0.613991 | 8.3:+4701134 | MS.gene26853:CDS |
GGAGGTGAATGGGGTGACCA+TGG | 0.614058 | 8.3:+4701406 | MS.gene26853:CDS |
CGACTCCAATCCTATTCGGA+TGG | 0.614891 | 8.3:+4698759 | MS.gene26853:CDS |
ATTGTTCTGCTACTCTCAAG+GGG | 0.626423 | 8.3:+4699127 | MS.gene26853:CDS |
TGGCTCTGTCAATATCACCT+TGG | 0.626940 | 8.3:+4700674 | MS.gene26853:CDS |
GCTACTTCAAAATGGAAATG+GGG | 0.626994 | 8.3:+4701428 | MS.gene26853:CDS |
GTCGTGGAAGCTCAATCCGG+CGG | 0.638778 | 8.3:-4698740 | None:intergenic |
GTTTACACTAGTACAACTTG+TGG | 0.641036 | 8.3:+4701120 | MS.gene26853:CDS |
GAGTTCAGAAGTCATAGACT+TGG | 0.649401 | 8.3:+4699093 | MS.gene26853:CDS |
AGCGAGCGAAAGAGACAGCG+TGG | 0.659831 | 8.3:-4698828 | None:intergenic |
AGGTGATATTGACAGAGCCA+AGG | 0.667399 | 8.3:-4700671 | None:intergenic |
CTCGGCAGGAAGAACAACAT+CGG | 0.700091 | 8.3:-4699163 | None:intergenic |
ATGTCCAGCATGATCCGCAG+TGG | 0.707970 | 8.3:-4699878 | None:intergenic |
GAAATGGGGAAGAATATGTG+CGG | 0.730027 | 8.3:+4701442 | MS.gene26853:CDS |
GTTAAGGATCAAGGCCACTG+CGG | 0.773436 | 8.3:+4699864 | MS.gene26853:CDS |
GAGAGTGAAAGATGGCACAG+TGG | 0.782503 | 8.3:+4698680 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAATTTAACAAATAGTTT+AGG | + | chr8.3:4701237-4701256 | MS.gene26853:intron | 10.0% |
!!! | TTTGTTTTTAATTTTGTTTT+GGG | + | chr8.3:4700996-4701015 | MS.gene26853:intron | 10.0% |
!!! | TTTTGTTTTTAATTTTGTTT+TGG | + | chr8.3:4700995-4701014 | MS.gene26853:intron | 10.0% |
!! | AAAAAGAAAATTAAAGTCAA+AGG | - | chr8.3:4699005-4699024 | None:intergenic | 15.0% |
!! | ATTGTATTTAATGTATTCAA+AGG | - | chr8.3:4700565-4700584 | None:intergenic | 15.0% |
!! | TTTGAATACATTAAATACAA+TGG | + | chr8.3:4700564-4700583 | MS.gene26853:CDS | 15.0% |
!!! | AAATTTTAAAGTATGAGTTT+TGG | + | chr8.3:4699958-4699977 | MS.gene26853:intron | 15.0% |
!!! | ATTTTGATGATAAATGATTT+TGG | + | chr8.3:4699039-4699058 | MS.gene26853:intron | 15.0% |
!! | ATAGCTTATAGTAGTTTATA+TGG | + | chr8.3:4699456-4699475 | MS.gene26853:intron | 20.0% |
!! | CTGAGTTTATATTATTTAGT+TGG | + | chr8.3:4700801-4700820 | MS.gene26853:intron | 20.0% |
!! | CTTTCATTCCATAAAATTAT+TGG | - | chr8.3:4700175-4700194 | None:intergenic | 20.0% |
!! | TACAAATAAATTAGGACTTA+GGG | - | chr8.3:4700302-4700321 | None:intergenic | 20.0% |
!! | TTAAATTGTTTATTCAAACG+AGG | + | chr8.3:4699539-4699558 | MS.gene26853:intron | 20.0% |
!! | TTACAAATAAATTAGGACTT+AGG | - | chr8.3:4700303-4700322 | None:intergenic | 20.0% |
!! | TTCCATTCCATTAAAATTAT+TGG | - | chr8.3:4700219-4700238 | None:intergenic | 20.0% |
!!! | AAACTGTCCAATAATTTTAA+TGG | + | chr8.3:4700209-4700228 | MS.gene26853:intron | 20.0% |
!!! | TAAACTGTCCAATAATTTTA+TGG | + | chr8.3:4700164-4700183 | MS.gene26853:intron | 20.0% |
!!! | TAAGTTATTTCTATAACTGA+AGG | - | chr8.3:4699503-4699522 | None:intergenic | 20.0% |
!!! | TACTATAAGCTATTTTCATA+AGG | - | chr8.3:4699449-4699468 | None:intergenic | 20.0% |
!!! | TGTTATTCCATTTTCTTATT+GGG | + | chr8.3:4699626-4699645 | MS.gene26853:intron | 20.0% |
! | AATAAGTAAATTGCATTCTG+AGG | + | chr8.3:4699767-4699786 | MS.gene26853:intron | 25.0% |
! | AATCAAACATATGATTACCA+AGG | - | chr8.3:4700694-4700713 | None:intergenic | 25.0% |
! | ACAAATAAATTAGGACTTAG+GGG | - | chr8.3:4700301-4700320 | None:intergenic | 25.0% |
! | ACTATGTTAATTTCTTGTGT+TGG | + | chr8.3:4700767-4700786 | MS.gene26853:intron | 25.0% |
! | ATTCAAATTTCGTTAACTTC+TGG | - | chr8.3:4701297-4701316 | None:intergenic | 25.0% |
! | ATTTAATGTATTCAAAGGCT+TGG | - | chr8.3:4700560-4700579 | None:intergenic | 25.0% |
! | CAATAAGAAAATGGAATAAC+AGG | - | chr8.3:4699627-4699646 | None:intergenic | 25.0% |
! | CACTTGGTTACAAATAAATT+AGG | - | chr8.3:4700310-4700329 | None:intergenic | 25.0% |
! | GAAATTAATGCTAACATACA+CGG | - | chr8.3:4699660-4699679 | None:intergenic | 25.0% |
! | GAATACATTAAATACAATGG+TGG | + | chr8.3:4700567-4700586 | MS.gene26853:CDS | 25.0% |
! | TAACGAAATTTGAATTTGTC+TGG | + | chr8.3:4701302-4701321 | MS.gene26853:intron | 25.0% |
! | TAGTTAACAAATACATCATG+CGG | - | chr8.3:4700726-4700745 | None:intergenic | 25.0% |
! | TCACAAACAAATATGAACAA+CGG | - | chr8.3:4699747-4699766 | None:intergenic | 25.0% |
! | TGACAGTCTAATATTAATTG+TGG | - | chr8.3:4699717-4699736 | None:intergenic | 25.0% |
! | TTCAAATTTCGTTAACTTCT+GGG | - | chr8.3:4701296-4701315 | None:intergenic | 25.0% |
! | TTGAATTAAACACTAGATTG+AGG | - | chr8.3:4701190-4701209 | None:intergenic | 25.0% |
! | TTTAATGTATTCAAAGGCTT+GGG | - | chr8.3:4700559-4700578 | None:intergenic | 25.0% |
! | TTTCTGCATACAATAACAAA+AGG | - | chr8.3:4699814-4699833 | None:intergenic | 25.0% |
!! | CTGTTATTCCATTTTCTTAT+TGG | + | chr8.3:4699625-4699644 | MS.gene26853:intron | 25.0% |
!! | TAATCATTTAATCTGAAGTG+CGG | - | chr8.3:4699577-4699596 | None:intergenic | 25.0% |
!! | TTTTCAGATGTAAATTTGCA+GGG | - | chr8.3:4700636-4700655 | None:intergenic | 25.0% |
!!! | AATAGTTTAGGTTGAATCTA+TGG | + | chr8.3:4701249-4701268 | MS.gene26853:intron | 25.0% |
!!! | GTCCAATAATTTTAATGGAA+TGG | + | chr8.3:4700214-4700233 | MS.gene26853:intron | 25.0% |
!!! | TTAATTTTGTTTTGGGTGTA+GGG | + | chr8.3:4701003-4701022 | MS.gene26853:intron | 25.0% |
!!! | TTTAATTTTGTTTTGGGTGT+AGG | + | chr8.3:4701002-4701021 | MS.gene26853:intron | 25.0% |
AAAGTGCAACTTCATACAAA+GGG | - | chr8.3:4700377-4700396 | None:intergenic | 30.0% | |
AAATTCAGTTGAAGAATGAC+AGG | - | chr8.3:4699682-4699701 | None:intergenic | 30.0% | |
AACTATAGCATAGACACTTA+TGG | - | chr8.3:4699349-4699368 | None:intergenic | 30.0% | |
AATTAAACACTAGATTGAGG+AGG | - | chr8.3:4701187-4701206 | None:intergenic | 30.0% | |
ATCTAATATAGATGAAGTCG+AGG | - | chr8.3:4700968-4700987 | None:intergenic | 30.0% | |
GACTTCAGATTATACAAGAA+AGG | + | chr8.3:4701096-4701115 | MS.gene26853:CDS | 30.0% | |
GTTATTGTATGCAGAAAGAT+TGG | + | chr8.3:4699817-4699836 | MS.gene26853:intron | 30.0% | |
TAAAGTGCAACTTCATACAA+AGG | - | chr8.3:4700378-4700397 | None:intergenic | 30.0% | |
TAAGTAGTAATCAAGTGTGT+TGG | + | chr8.3:4699287-4699306 | MS.gene26853:intron | 30.0% | |
TCAAATTTCGTTAACTTCTG+GGG | - | chr8.3:4701295-4701314 | None:intergenic | 30.0% | |
TCTACTAATAAGAAACGTCT+TGG | + | chr8.3:4698940-4698959 | MS.gene26853:CDS | 30.0% | |
TGATTGCTCAAAGAAAAAGT+TGG | - | chr8.3:4700029-4700048 | None:intergenic | 30.0% | |
TTGGCTCATTAAAAACTCAT+GGG | + | chr8.3:4701384-4701403 | MS.gene26853:CDS | 30.0% | |
! | AAAGTTGGCTTATAAACCAA+AGG | - | chr8.3:4700014-4700033 | None:intergenic | 30.0% |
! | AAGGCATTAATTTGAGAAAG+TGG | - | chr8.3:4700344-4700363 | None:intergenic | 30.0% |
! | ATTGGCTCATTAAAAACTCA+TGG | + | chr8.3:4701383-4701402 | MS.gene26853:CDS | 30.0% |
! | GAGTTTTTAATGAGCCAATA+TGG | - | chr8.3:4701382-4701401 | None:intergenic | 30.0% |
! | GTTTTCAGATGTAAATTTGC+AGG | - | chr8.3:4700637-4700656 | None:intergenic | 30.0% |
AAATTGTTCTGCTACTCTCA+AGG | + | chr8.3:4699125-4699144 | MS.gene26853:CDS | 35.0% | |
AAGAGAGATATTCTTTCCGA+AGG | - | chr8.3:4700469-4700488 | None:intergenic | 35.0% | |
AATTGTTCTGCTACTCTCAA+GGG | + | chr8.3:4699126-4699145 | MS.gene26853:CDS | 35.0% | |
AGGTATAGTCAGTGAAGTTA+AGG | + | chr8.3:4699848-4699867 | MS.gene26853:CDS | 35.0% | |
ATTCACATTATGTGCTCGTA+TGG | + | chr8.3:4700882-4700901 | MS.gene26853:intron | 35.0% | |
ATTGTATGCAGAAAGATTGG+AGG | + | chr8.3:4699820-4699839 | MS.gene26853:intron | 35.0% | |
GAAATTTGAATTTGTCTGGC+AGG | + | chr8.3:4701306-4701325 | MS.gene26853:intron | 35.0% | |
GCTACTTCAAAATGGAAATG+GGG | + | chr8.3:4701428-4701447 | MS.gene26853:CDS | 35.0% | |
GGCTACTTCAAAATGGAAAT+GGG | + | chr8.3:4701427-4701446 | MS.gene26853:CDS | 35.0% | |
GGCTTATAAACCAAAGGATA+GGG | - | chr8.3:4700008-4700027 | None:intergenic | 35.0% | |
GTTTACACTAGTACAACTTG+TGG | + | chr8.3:4701120-4701139 | MS.gene26853:CDS | 35.0% | |
TACAAAGGGTTGAATCTCAA+AGG | - | chr8.3:4700363-4700382 | None:intergenic | 35.0% | |
TATAGCATAGACACTTATGG+TGG | - | chr8.3:4699346-4699365 | None:intergenic | 35.0% | |
TCTACGCTTCATTTCATCAA+CGG | - | chr8.3:4698884-4698903 | None:intergenic | 35.0% | |
TGGCTACTTCAAAATGGAAA+TGG | + | chr8.3:4701426-4701445 | MS.gene26853:CDS | 35.0% | |
TGGCTCATTAAAAACTCATG+GGG | + | chr8.3:4701385-4701404 | MS.gene26853:CDS | 35.0% | |
TGGCTTATAAACCAAAGGAT+AGG | - | chr8.3:4700009-4700028 | None:intergenic | 35.0% | |
TGTCGTATTATGAGCTAGTT+TGG | + | chr8.3:4699228-4699247 | MS.gene26853:intron | 35.0% | |
TTCAATAACTTTGGCTGCAA+TGG | + | chr8.3:4700522-4700541 | MS.gene26853:CDS | 35.0% | |
TTGAAGATGGTGTACCATAT+TGG | + | chr8.3:4701365-4701384 | MS.gene26853:CDS | 35.0% | |
! | AGTGGTGAAATTTTTGCACT+TGG | - | chr8.3:4700326-4700345 | None:intergenic | 35.0% |
! | CAGTGTCATTGTTACAGATA+TGG | - | chr8.3:4700401-4700420 | None:intergenic | 35.0% |
! | GAGAGTTTTTGCAAGAACTT+AGG | + | chr8.3:4699372-4699391 | MS.gene26853:intron | 35.0% |
! | TTCCATTTTCTTATTGGGTC+TGG | + | chr8.3:4699631-4699650 | MS.gene26853:intron | 35.0% |
!! | AATGAGCATTGTGCTCTTTT+TGG | - | chr8.3:4700839-4700858 | None:intergenic | 35.0% |
!! | AGATTTTGCTGATTGGACTT+GGG | + | chr8.3:4699068-4699087 | MS.gene26853:intron | 35.0% |
!!! | ACTTAAGTGTTGTTTTCGTC+AGG | - | chr8.3:4699272-4699291 | None:intergenic | 35.0% |
!!! | TTTCCATTTTGAAGTAGCCA+TGG | - | chr8.3:4701426-4701445 | None:intergenic | 35.0% |
AAACGTCTTGGTTACACTCT+CGG | + | chr8.3:4698952-4698971 | MS.gene26853:CDS | 40.0% | |
AATAACTTTGGCTGCAATGG+TGG | + | chr8.3:4700525-4700544 | MS.gene26853:CDS | 40.0% | |
AGGGTTTCAAGAGGTTAAGA+TGG | - | chr8.3:4699989-4700008 | None:intergenic | 40.0% | |
ATAACTTTGGCTGCAATGGT+GGG | + | chr8.3:4700526-4700545 | MS.gene26853:CDS | 40.0% | |
ATGTATTCAAAGGCTTGGGA+TGG | - | chr8.3:4700555-4700574 | None:intergenic | 40.0% | |
ATTGTTCTGCTACTCTCAAG+GGG | + | chr8.3:4699127-4699146 | MS.gene26853:CDS | 40.0% | |
CACCAGACCCAATAAGAAAA+TGG | - | chr8.3:4699636-4699655 | None:intergenic | 40.0% | |
CAGAAAGATTGGAGGAAAGA+AGG | + | chr8.3:4699828-4699847 | MS.gene26853:intron | 40.0% | |
CTCATTAAAAACTCATGGGG+AGG | + | chr8.3:4701388-4701407 | MS.gene26853:CDS | 40.0% | |
GAACAACATCGGTAATCCTA+TGG | - | chr8.3:4699155-4699174 | None:intergenic | 40.0% | |
GAGTTCAGAAGTCATAGACT+TGG | + | chr8.3:4699093-4699112 | MS.gene26853:CDS | 40.0% | |
GCTGGTGCTTTCAATAACTT+TGG | + | chr8.3:4700513-4700532 | MS.gene26853:CDS | 40.0% | |
GTCAGTGAAGTTAAGGATCA+AGG | + | chr8.3:4699855-4699874 | MS.gene26853:CDS | 40.0% | |
GTTGGGTATGGAATTGAAGA+TGG | + | chr8.3:4701352-4701371 | MS.gene26853:CDS | 40.0% | |
TATCCCTACACTGGACAAAA+TGG | + | chr8.3:4700609-4700628 | MS.gene26853:CDS | 40.0% | |
TATTGCAGAACACTCACCAT+GGG | - | chr8.3:4701153-4701172 | None:intergenic | 40.0% | |
TGACCATGGCTACTTCAAAA+TGG | + | chr8.3:4701420-4701439 | MS.gene26853:CDS | 40.0% | |
! | AATCATGCTGTTCTTGCTGT+TGG | + | chr8.3:4701334-4701353 | MS.gene26853:CDS | 40.0% |
! | GAGTTGCAGATTTTGCTGAT+TGG | + | chr8.3:4699061-4699080 | MS.gene26853:intron | 40.0% |
!! | ATCATGCTGTTCTTGCTGTT+GGG | + | chr8.3:4701335-4701354 | MS.gene26853:CDS | 40.0% |
!! | CAGATTTTGCTGATTGGACT+TGG | + | chr8.3:4699067-4699086 | MS.gene26853:intron | 40.0% |
!!! | AAGAAGCTGCTTTTCCATGT+CGG | - | chr8.3:4698788-4698807 | None:intergenic | 40.0% |
AAAACTCATGGGGAGGTGAA+TGG | + | chr8.3:4701395-4701414 | MS.gene26853:CDS | 45.0% | |
AAACTCATGGGGAGGTGAAT+GGG | + | chr8.3:4701396-4701415 | MS.gene26853:CDS | 45.0% | |
AAGCAGCTTCTTCAGGTCAT+CGG | + | chr8.3:4698796-4698815 | MS.gene26853:CDS | 45.0% | |
ACCTCAAATGCCACACTAAC+GGG | - | chr8.3:4701069-4701088 | None:intergenic | 45.0% | |
AGGTGATATTGACAGAGCCA+AGG | - | chr8.3:4700674-4700693 | None:intergenic | 45.0% | |
CACCTCAAATGCCACACTAA+CGG | - | chr8.3:4701070-4701089 | None:intergenic | 45.0% | |
CAGTTGTTGCTGACATACCT+CGG | - | chr8.3:4699184-4699203 | None:intergenic | 45.0% | |
CATGGAAAAGCAGCTTCTTC+AGG | + | chr8.3:4698789-4698808 | MS.gene26853:CDS | 45.0% | |
CCAAAGGATAGGGTTTCAAG+AGG | - | chr8.3:4699998-4700017 | None:intergenic | 45.0% | |
CCACGCAGAAGAAAACGATA+AGG | - | chr8.3:4698711-4698730 | None:intergenic | 45.0% | |
CCTCTTGAAACCCTATCCTT+TGG | + | chr8.3:4699995-4700014 | MS.gene26853:intron | 45.0% | |
CTATTGCAGAACACTCACCA+TGG | - | chr8.3:4701154-4701173 | None:intergenic | 45.0% | |
GATATGCTTCCTCTGTCTCA+AGG | - | chr8.3:4700593-4700612 | None:intergenic | 45.0% | |
GCTCGCTTTGCTAACAGATA+CGG | + | chr8.3:4698844-4698863 | MS.gene26853:CDS | 45.0% | |
GTAGTTGCTCTGTAGAGACA+TGG | + | chr8.3:4700923-4700942 | MS.gene26853:intron | 45.0% | |
GTCTCTACAGAGCAACTACA+AGG | - | chr8.3:4700922-4700941 | None:intergenic | 45.0% | |
TCCACGACTCCAATCCTATT+CGG | + | chr8.3:4698755-4698774 | MS.gene26853:CDS | 45.0% | |
! | AACGTTGCTGTTCAAGTCCT+TGG | + | chr8.3:4700654-4700673 | MS.gene26853:CDS | 45.0% |
! | CCTTATCGTTTTCTTCTGCG+TGG | + | chr8.3:4698708-4698727 | MS.gene26853:CDS | 45.0% |
! | CTGAAGTGCGGATGCTATTT+AGG | - | chr8.3:4699565-4699584 | None:intergenic | 45.0% |
! | CTGACTGTGAGGAGCTATTT+TGG | + | chr8.3:4699913-4699932 | MS.gene26853:intron | 45.0% |
! | GCATAGACACTTATGGTGGA+AGG | - | chr8.3:4699342-4699361 | None:intergenic | 45.0% |
! | GGACCATTTTGTCCAGTGTA+GGG | - | chr8.3:4700615-4700634 | None:intergenic | 45.0% |
! | TCTGGGGAAGCATATCATGA+TGG | - | chr8.3:4701279-4701298 | None:intergenic | 45.0% |
! | TCTGGTGTCTAAAACCGAGA+TGG | - | chr8.3:4699315-4699334 | None:intergenic | 45.0% |
! | TGGCTCTGTCAATATCACCT+TGG | + | chr8.3:4700674-4700693 | MS.gene26853:CDS | 45.0% |
!! | TTTTGCTGATTGGACTTGGG+AGG | + | chr8.3:4699071-4699090 | MS.gene26853:CDS | 45.0% |
AACTCATGGGGAGGTGAATG+GGG | + | chr8.3:4701397-4701416 | MS.gene26853:CDS | 50.0% | |
AACTTGTGGCAACACACCCA+TGG | + | chr8.3:4701134-4701153 | MS.gene26853:CDS | 50.0% | |
ACTGTCATCTGCAGCACAAC+TGG | + | chr8.3:4700417-4700436 | MS.gene26853:intron | 50.0% | |
ATGTCGGAGACCATCCGAAT+AGG | - | chr8.3:4698772-4698791 | None:intergenic | 50.0% | |
CGACTCCAATCCTATTCGGA+TGG | + | chr8.3:4698759-4698778 | MS.gene26853:CDS | 50.0% | |
CGTTAGTGTGGCATTTGAGG+TGG | + | chr8.3:4701068-4701087 | MS.gene26853:CDS | 50.0% | |
CTACTCTCAAGGGGAACCAT+AGG | + | chr8.3:4699136-4699155 | MS.gene26853:CDS | 50.0% | |
CTCGGCAGGAAGAACAACAT+CGG | - | chr8.3:4699166-4699185 | None:intergenic | 50.0% | |
GGAGACCATCCGAATAGGAT+TGG | - | chr8.3:4698767-4698786 | None:intergenic | 50.0% | |
GTTAAGGATCAAGGCCACTG+CGG | + | chr8.3:4699864-4699883 | MS.gene26853:CDS | 50.0% | |
TATTCGGATGGTCTCCGACA+TGG | + | chr8.3:4698771-4698790 | MS.gene26853:CDS | 50.0% | |
TCCCGTTAGTGTGGCATTTG+AGG | + | chr8.3:4701065-4701084 | MS.gene26853:CDS | 50.0% | |
TCCGAATAGGATTGGAGTCG+TGG | - | chr8.3:4698759-4698778 | None:intergenic | 50.0% | |
TCTTTCTGAGCAGCAGCTAG+TGG | + | chr8.3:4700485-4700504 | MS.gene26853:CDS | 50.0% | |
! | CAGGTTGCTTTCTGACTGTG+AGG | + | chr8.3:4699902-4699921 | MS.gene26853:intron | 50.0% |
! | CTTATGGTGGAAGGTGTGTC+TGG | - | chr8.3:4699333-4699352 | None:intergenic | 50.0% |
! | GAGGAAGCATATCCCTACAC+TGG | + | chr8.3:4700600-4700619 | MS.gene26853:CDS | 50.0% |
! | GGGACCATTTTGTCCAGTGT+AGG | - | chr8.3:4700616-4700635 | None:intergenic | 50.0% |
! | TTTGGAGTCAGCTTACGCAC+AGG | + | chr8.3:4700443-4700462 | MS.gene26853:CDS | 50.0% |
! | TTTTGCTCGTCCCGTTAGTG+TGG | + | chr8.3:4701056-4701075 | MS.gene26853:CDS | 50.0% |
!! | CAAGTGTGTTGGTGCCATCT+CGG | + | chr8.3:4699298-4699317 | MS.gene26853:intron | 50.0% |
!! | GCTGTTCTTGCTGTTGGGTA+TGG | + | chr8.3:4701340-4701359 | MS.gene26853:CDS | 50.0% |
ATGTCCAGCATGATCCGCAG+TGG | - | chr8.3:4699881-4699900 | None:intergenic | 55.0% | |
CGATGTTGTTCTTCCTGCCG+AGG | + | chr8.3:4699164-4699183 | MS.gene26853:CDS | 55.0% | |
CTGCAGCACAACTGGAGCTT+TGG | + | chr8.3:4700425-4700444 | MS.gene26853:intron | 55.0% | |
GCGGATCATGCTGGACATTC+AGG | + | chr8.3:4699883-4699902 | MS.gene26853:CDS | 55.0% | |
GGAGTCGTGGAAGCTCAATC+CGG | - | chr8.3:4698746-4698765 | None:intergenic | 55.0% | |
TCAGCTTACGCACAGGCCTT+CGG | + | chr8.3:4700450-4700469 | MS.gene26853:CDS | 55.0% | |
TGTTGCTGACATACCTCGGC+AGG | - | chr8.3:4699180-4699199 | None:intergenic | 55.0% | |
! | CAATGGTGGCCTTGAGACAG+AGG | + | chr8.3:4700581-4700600 | MS.gene26853:CDS | 55.0% |
!!! | GTTTTGGGTGTAGGGTGCTG+AGG | + | chr8.3:4701011-4701030 | MS.gene26853:intron | 55.0% |
AAGGCCACTGCGGATCATGC+TGG | + | chr8.3:4699874-4699893 | MS.gene26853:CDS | 60.0% | |
AGCGAGCGAAAGAGACAGCG+TGG | - | chr8.3:4698831-4698850 | None:intergenic | 60.0% | |
GGAGGTGAATGGGGTGACCA+TGG | + | chr8.3:4701406-4701425 | MS.gene26853:CDS | 60.0% | |
GTCGTGGAAGCTCAATCCGG+CGG | - | chr8.3:4698743-4698762 | None:intergenic | 60.0% | |
!! | CAGCAGCTAGTGGACTGTGC+TGG | + | chr8.3:4700495-4700514 | MS.gene26853:CDS | 60.0% |
GTGGAAGCTCAATCCGGCGG+CGG | - | chr8.3:4698740-4698759 | None:intergenic | 65.0% | |
GAAGCTCAATCCGGCGGCGG+CGG | - | chr8.3:4698737-4698756 | None:intergenic | 70.0% | |
! | GCTCAATCCGGCGGCGGCGG+TGG | - | chr8.3:4698734-4698753 | None:intergenic | 80.0% |
! | TGCGTGGCCACCGCCGCCGC+CGG | + | chr8.3:4698724-4698743 | MS.gene26853:CDS | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 4698691 | 4701463 | 4698691 | ID=MS.gene26853 |
chr8.3 | mRNA | 4698691 | 4701463 | 4698691 | ID=MS.gene26853.t1;Parent=MS.gene26853 |
chr8.3 | exon | 4698691 | 4698982 | 4698691 | ID=MS.gene26853.t1.exon1;Parent=MS.gene26853.t1 |
chr8.3 | CDS | 4698691 | 4698982 | 4698691 | ID=cds.MS.gene26853.t1;Parent=MS.gene26853.t1 |
chr8.3 | exon | 4699070 | 4699185 | 4699070 | ID=MS.gene26853.t1.exon2;Parent=MS.gene26853.t1 |
chr8.3 | CDS | 4699070 | 4699185 | 4699070 | ID=cds.MS.gene26853.t1;Parent=MS.gene26853.t1 |
chr8.3 | exon | 4699831 | 4699904 | 4699831 | ID=MS.gene26853.t1.exon3;Parent=MS.gene26853.t1 |
chr8.3 | CDS | 4699831 | 4699904 | 4699831 | ID=cds.MS.gene26853.t1;Parent=MS.gene26853.t1 |
chr8.3 | exon | 4700431 | 4700695 | 4700431 | ID=MS.gene26853.t1.exon4;Parent=MS.gene26853.t1 |
chr8.3 | CDS | 4700431 | 4700695 | 4700431 | ID=cds.MS.gene26853.t1;Parent=MS.gene26853.t1 |
chr8.3 | exon | 4701024 | 4701155 | 4701024 | ID=MS.gene26853.t1.exon5;Parent=MS.gene26853.t1 |
chr8.3 | CDS | 4701024 | 4701155 | 4701024 | ID=cds.MS.gene26853.t1;Parent=MS.gene26853.t1 |
chr8.3 | exon | 4701328 | 4701463 | 4701328 | ID=MS.gene26853.t1.exon6;Parent=MS.gene26853.t1 |
chr8.3 | CDS | 4701328 | 4701463 | 4701328 | ID=cds.MS.gene26853.t1;Parent=MS.gene26853.t1 |
Gene Sequence |
Protein sequence |