Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26669.t1 | ABF18679.1 | 99.4 | 350 | 2 | 0 | 1 | 350 | 1 | 350 | 6.00E-206 | 726.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26669.t1 | Q8RWQ9 | 73.1 | 350 | 89 | 2 | 5 | 350 | 10 | 358 | 2.2e-156 | 553.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26669.t1 | Q1KK73 | 99.4 | 350 | 2 | 0 | 1 | 350 | 1 | 350 | 4.3e-206 | 726.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26669.t1 | MTR_4g125300 | 98.571 | 350 | 5 | 0 | 1 | 350 | 1 | 350 | 0.0 | 726 |
MS.gene26669.t1 | MTR_3g075390 | 38.630 | 365 | 186 | 11 | 1 | 348 | 1 | 344 | 2.68e-73 | 231 |
MS.gene26669.t1 | MTR_4g094918 | 42.997 | 307 | 154 | 9 | 57 | 348 | 41 | 341 | 5.28e-73 | 231 |
MS.gene26669.t1 | MTR_4g047610 | 43.366 | 309 | 156 | 12 | 53 | 348 | 40 | 342 | 5.13e-72 | 228 |
MS.gene26669.t1 | MTR_5g022560 | 41.883 | 308 | 162 | 10 | 53 | 348 | 41 | 343 | 2.01e-71 | 226 |
MS.gene26669.t1 | MTR_4g079470 | 42.434 | 304 | 157 | 11 | 57 | 348 | 47 | 344 | 5.28e-71 | 225 |
MS.gene26669.t1 | MTR_4g079770 | 42.434 | 304 | 157 | 11 | 57 | 348 | 47 | 344 | 5.45e-71 | 225 |
MS.gene26669.t1 | MTR_1g107550 | 41.265 | 332 | 175 | 10 | 31 | 348 | 30 | 355 | 2.74e-70 | 227 |
MS.gene26669.t1 | MTR_4g079440 | 41.311 | 305 | 168 | 6 | 51 | 349 | 46 | 345 | 7.71e-70 | 222 |
MS.gene26669.t1 | MTR_4g079800 | 42.434 | 304 | 157 | 12 | 57 | 348 | 47 | 344 | 1.20e-69 | 221 |
MS.gene26669.t1 | MTR_4g080700 | 38.080 | 323 | 183 | 9 | 34 | 348 | 26 | 339 | 1.37e-69 | 221 |
MS.gene26669.t1 | MTR_4g080730 | 39.604 | 303 | 171 | 7 | 53 | 348 | 42 | 339 | 6.13e-69 | 219 |
MS.gene26669.t1 | MTR_3g116080 | 40.391 | 307 | 168 | 8 | 51 | 348 | 47 | 347 | 4.05e-68 | 218 |
MS.gene26669.t1 | MTR_4g107930 | 40.909 | 308 | 165 | 10 | 53 | 348 | 42 | 344 | 2.28e-66 | 213 |
MS.gene26669.t1 | MTR_1g018840 | 38.227 | 361 | 190 | 12 | 6 | 348 | 16 | 361 | 3.76e-66 | 216 |
MS.gene26669.t1 | MTR_1g018840 | 38.122 | 362 | 191 | 12 | 5 | 348 | 15 | 361 | 3.90e-66 | 216 |
MS.gene26669.t1 | MTR_3g102220 | 41.667 | 312 | 153 | 12 | 57 | 348 | 59 | 361 | 1.67e-65 | 214 |
MS.gene26669.t1 | MTR_2g015920 | 33.613 | 357 | 214 | 8 | 6 | 348 | 11 | 358 | 2.33e-65 | 211 |
MS.gene26669.t1 | MTR_4g071060 | 38.292 | 363 | 184 | 11 | 6 | 345 | 8 | 353 | 5.36e-65 | 210 |
MS.gene26669.t1 | MTR_3g112430 | 39.744 | 312 | 168 | 9 | 51 | 348 | 36 | 341 | 5.47e-65 | 212 |
MS.gene26669.t1 | MTR_4g104370 | 41.472 | 299 | 154 | 9 | 64 | 348 | 52 | 343 | 2.51e-64 | 208 |
MS.gene26669.t1 | MTR_2g090890 | 40.132 | 304 | 170 | 7 | 51 | 348 | 39 | 336 | 1.91e-63 | 205 |
MS.gene26669.t1 | MTR_4g080360 | 37.462 | 331 | 178 | 13 | 34 | 348 | 24 | 341 | 3.46e-63 | 204 |
MS.gene26669.t1 | MTR_2g075830 | 40.728 | 302 | 163 | 10 | 57 | 348 | 45 | 340 | 2.64e-62 | 202 |
MS.gene26669.t1 | MTR_1g023210 | 38.279 | 337 | 177 | 10 | 28 | 345 | 33 | 357 | 1.44e-61 | 201 |
MS.gene26669.t1 | MTR_2g016270 | 37.785 | 307 | 165 | 8 | 51 | 348 | 51 | 340 | 8.04e-60 | 199 |
MS.gene26669.t1 | MTR_2g016180 | 37.419 | 310 | 177 | 8 | 51 | 348 | 51 | 355 | 2.03e-58 | 196 |
MS.gene26669.t1 | MTR_2g015850 | 40.924 | 303 | 151 | 14 | 63 | 349 | 74 | 364 | 7.25e-58 | 191 |
MS.gene26669.t1 | MTR_1g094135 | 35.342 | 365 | 204 | 11 | 7 | 350 | 15 | 368 | 2.08e-57 | 191 |
MS.gene26669.t1 | MTR_7g078600 | 37.908 | 306 | 174 | 9 | 51 | 349 | 42 | 338 | 6.06e-57 | 188 |
MS.gene26669.t1 | MTR_2g083930 | 36.420 | 324 | 179 | 11 | 45 | 349 | 29 | 344 | 7.26e-57 | 188 |
MS.gene26669.t1 | MTR_2g015930 | 31.476 | 359 | 217 | 9 | 6 | 348 | 13 | 358 | 2.85e-55 | 185 |
MS.gene26669.t1 | MTR_7g079230 | 38.689 | 305 | 162 | 11 | 57 | 349 | 45 | 336 | 3.04e-55 | 184 |
MS.gene26669.t1 | MTR_4g065077 | 32.597 | 362 | 222 | 9 | 1 | 348 | 3 | 356 | 1.50e-51 | 175 |
MS.gene26669.t1 | MTR_2g067900 | 35.455 | 330 | 174 | 13 | 44 | 349 | 13 | 327 | 2.13e-47 | 163 |
MS.gene26669.t1 | MTR_4g072790 | 33.429 | 347 | 186 | 9 | 4 | 345 | 11 | 317 | 2.42e-46 | 160 |
MS.gene26669.t1 | MTR_8g086470 | 31.006 | 358 | 217 | 9 | 1 | 348 | 19 | 356 | 5.14e-45 | 158 |
MS.gene26669.t1 | MTR_4g073660 | 33.523 | 352 | 183 | 11 | 4 | 345 | 10 | 320 | 2.47e-44 | 155 |
MS.gene26669.t1 | MTR_4g072340 | 32.955 | 352 | 185 | 10 | 4 | 345 | 11 | 321 | 5.08e-44 | 154 |
MS.gene26669.t1 | MTR_2g067560 | 34.259 | 324 | 163 | 12 | 51 | 341 | 16 | 322 | 2.07e-43 | 160 |
MS.gene26669.t1 | MTR_2g064475 | 32.964 | 361 | 172 | 16 | 41 | 349 | 10 | 352 | 3.04e-41 | 148 |
MS.gene26669.t1 | MTR_2g066980 | 30.435 | 345 | 168 | 14 | 34 | 350 | 20 | 320 | 9.53e-37 | 135 |
MS.gene26669.t1 | MTR_1g023810 | 39.091 | 220 | 121 | 7 | 133 | 346 | 49 | 261 | 3.61e-36 | 132 |
MS.gene26669.t1 | MTR_7g111060 | 32.573 | 307 | 169 | 11 | 66 | 340 | 30 | 330 | 5.76e-35 | 131 |
MS.gene26669.t1 | MTR_7g111050 | 32.609 | 322 | 179 | 15 | 49 | 340 | 14 | 327 | 4.29e-32 | 123 |
MS.gene26669.t1 | MTR_7g078630 | 33.700 | 273 | 141 | 8 | 44 | 305 | 699 | 942 | 1.80e-31 | 125 |
MS.gene26669.t1 | MTR_7g111050 | 30.169 | 295 | 171 | 13 | 48 | 314 | 9 | 296 | 3.66e-20 | 89.7 |
MS.gene26669.t1 | MTR_3g029560 | 29.907 | 214 | 116 | 8 | 145 | 349 | 50 | 238 | 3.61e-19 | 85.9 |
MS.gene26669.t1 | MTR_7g078580 | 42.157 | 102 | 49 | 5 | 252 | 348 | 5 | 101 | 2.43e-18 | 80.5 |
MS.gene26669.t1 | MTR_1g025450 | 32.203 | 177 | 94 | 5 | 133 | 306 | 55 | 208 | 4.21e-18 | 85.9 |
MS.gene26669.t1 | MTR_7g078310 | 36.765 | 136 | 80 | 3 | 92 | 225 | 115 | 246 | 2.70e-16 | 78.2 |
MS.gene26669.t1 | MTR_2g015840 | 31.902 | 163 | 94 | 5 | 38 | 186 | 20 | 179 | 5.26e-16 | 77.4 |
MS.gene26669.t1 | MTR_2g015840 | 40.171 | 117 | 60 | 5 | 238 | 349 | 161 | 272 | 5.91e-16 | 77.4 |
MS.gene26669.t1 | MTR_7g079130 | 43.478 | 92 | 42 | 5 | 263 | 348 | 10 | 97 | 1.33e-15 | 72.0 |
MS.gene26669.t1 | MTR_8g087510 | 35.115 | 131 | 79 | 4 | 175 | 305 | 24 | 148 | 2.75e-15 | 73.6 |
MS.gene26669.t1 | MTR_2g016380 | 32.787 | 122 | 74 | 4 | 231 | 347 | 16 | 134 | 1.51e-14 | 72.8 |
MS.gene26669.t1 | MTR_2g047960 | 46.250 | 80 | 42 | 1 | 142 | 221 | 7 | 85 | 9.07e-14 | 67.0 |
MS.gene26669.t1 | MTR_3g082370 | 26.389 | 216 | 140 | 8 | 138 | 340 | 5 | 214 | 9.74e-12 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26669.t1 | AT3G45310 | 72.881 | 354 | 90 | 2 | 1 | 350 | 7 | 358 | 0.0 | 556 |
MS.gene26669.t1 | AT3G45310 | 72.599 | 354 | 90 | 3 | 1 | 350 | 7 | 357 | 0.0 | 550 |
MS.gene26669.t1 | AT5G60360 | 74.925 | 335 | 80 | 1 | 20 | 350 | 24 | 358 | 0.0 | 543 |
MS.gene26669.t1 | AT5G60360 | 74.627 | 335 | 80 | 2 | 20 | 350 | 24 | 357 | 0.0 | 537 |
MS.gene26669.t1 | AT5G60360 | 74.691 | 324 | 78 | 1 | 20 | 339 | 24 | 347 | 0.0 | 522 |
MS.gene26669.t1 | AT5G43060 | 46.048 | 291 | 141 | 9 | 67 | 348 | 70 | 353 | 1.14e-72 | 233 |
MS.gene26669.t1 | AT3G48340 | 42.667 | 300 | 151 | 8 | 64 | 348 | 50 | 343 | 5.81e-72 | 228 |
MS.gene26669.t1 | AT1G47128 | 38.440 | 359 | 193 | 12 | 5 | 348 | 7 | 352 | 7.13e-72 | 231 |
MS.gene26669.t1 | AT5G50260 | 38.655 | 357 | 184 | 11 | 6 | 348 | 7 | 342 | 7.94e-70 | 223 |
MS.gene26669.t1 | AT4G11310 | 37.222 | 360 | 192 | 9 | 6 | 348 | 10 | 352 | 1.56e-68 | 219 |
MS.gene26669.t1 | AT4G36880 | 42.140 | 299 | 150 | 10 | 67 | 348 | 69 | 361 | 2.39e-68 | 219 |
MS.gene26669.t1 | AT4G35350 | 41.558 | 308 | 164 | 9 | 51 | 348 | 51 | 352 | 2.74e-68 | 218 |
MS.gene26669.t1 | AT3G54940 | 38.333 | 360 | 191 | 9 | 1 | 340 | 6 | 354 | 4.70e-68 | 218 |
MS.gene26669.t1 | AT1G06260 | 39.031 | 351 | 185 | 10 | 7 | 348 | 12 | 342 | 8.41e-68 | 217 |
MS.gene26669.t1 | AT3G19400 | 42.857 | 301 | 153 | 10 | 60 | 347 | 53 | 347 | 1.21e-67 | 217 |
MS.gene26669.t1 | AT4G11320 | 38.838 | 327 | 170 | 7 | 40 | 348 | 45 | 359 | 1.67e-67 | 217 |
MS.gene26669.t1 | AT4G11320 | 38.838 | 327 | 170 | 7 | 40 | 348 | 45 | 359 | 1.67e-67 | 217 |
MS.gene26669.t1 | AT4G23520 | 40.323 | 310 | 166 | 10 | 51 | 348 | 47 | 349 | 2.87e-67 | 216 |
MS.gene26669.t1 | AT1G20850 | 40.000 | 310 | 167 | 9 | 51 | 348 | 51 | 353 | 1.53e-66 | 214 |
MS.gene26669.t1 | AT5G45890 | 40.367 | 327 | 167 | 11 | 40 | 349 | 31 | 346 | 7.51e-66 | 212 |
MS.gene26669.t1 | AT1G09850 | 39.286 | 308 | 171 | 8 | 51 | 348 | 32 | 333 | 2.45e-64 | 211 |
MS.gene26669.t1 | AT3G19390 | 42.000 | 300 | 157 | 11 | 60 | 348 | 52 | 345 | 8.44e-64 | 209 |
MS.gene26669.t1 | AT3G48350 | 38.187 | 364 | 181 | 14 | 4 | 348 | 5 | 343 | 2.58e-63 | 206 |
MS.gene26669.t1 | AT1G29080 | 41.234 | 308 | 158 | 11 | 57 | 348 | 45 | 345 | 2.02e-62 | 203 |
MS.gene26669.t1 | AT2G21430 | 37.059 | 340 | 187 | 8 | 28 | 345 | 20 | 354 | 1.39e-60 | 199 |
MS.gene26669.t1 | AT1G29090 | 37.396 | 361 | 182 | 15 | 5 | 348 | 21 | 354 | 3.71e-60 | 197 |
MS.gene26669.t1 | AT4G39090 | 38.769 | 325 | 170 | 9 | 40 | 345 | 43 | 357 | 1.40e-59 | 196 |
MS.gene26669.t1 | AT2G34080 | 39.498 | 319 | 165 | 14 | 46 | 348 | 38 | 344 | 8.78e-59 | 193 |
MS.gene26669.t1 | AT3G43960 | 40.594 | 303 | 162 | 11 | 59 | 348 | 49 | 346 | 1.48e-58 | 194 |
MS.gene26669.t1 | AT4G16190 | 36.765 | 340 | 185 | 11 | 26 | 345 | 34 | 363 | 1.35e-55 | 186 |
MS.gene26669.t1 | AT3G49340 | 37.500 | 312 | 171 | 11 | 53 | 348 | 37 | 340 | 2.09e-55 | 184 |
MS.gene26669.t1 | AT2G27420 | 37.700 | 313 | 168 | 12 | 57 | 348 | 41 | 347 | 6.08e-55 | 184 |
MS.gene26669.t1 | AT1G29110 | 37.061 | 313 | 161 | 11 | 53 | 348 | 40 | 333 | 1.58e-52 | 177 |
MS.gene26669.t1 | AT4G35350 | 43.096 | 239 | 127 | 7 | 51 | 283 | 51 | 286 | 3.79e-50 | 169 |
MS.gene26669.t1 | AT3G54940 | 37.589 | 282 | 157 | 5 | 1 | 271 | 6 | 279 | 1.91e-48 | 164 |
MS.gene26669.t1 | AT3G19400 | 42.358 | 229 | 121 | 7 | 60 | 279 | 53 | 279 | 5.35e-46 | 159 |
MS.gene26669.t1 | AT3G48350 | 36.577 | 298 | 154 | 10 | 4 | 287 | 5 | 281 | 5.52e-43 | 151 |
MS.gene26669.t1 | AT1G02305 | 33.677 | 291 | 157 | 11 | 80 | 340 | 49 | 333 | 3.79e-34 | 129 |
MS.gene26669.t1 | AT1G02300 | 37.089 | 213 | 102 | 8 | 152 | 340 | 146 | 350 | 5.25e-31 | 121 |
MS.gene26669.t1 | AT4G01610 | 31.629 | 313 | 174 | 13 | 59 | 340 | 27 | 330 | 1.06e-30 | 120 |
MS.gene26669.t1 | AT4G01610 | 30.990 | 313 | 176 | 13 | 59 | 340 | 27 | 330 | 1.04e-28 | 114 |
Find 87 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGGATCATGCTGGACATTC+AGG | 0.322819 | 8.3:+4718075 | MS.gene26669:CDS |
CTGCAGCACAACTGGAGCTT+TGG | 0.347290 | 8.3:+4718617 | MS.gene26669:intron |
TATCCCTACACTGGACAAAA+TGG | 0.356510 | 8.3:+4718801 | MS.gene26669:CDS |
GCTCAATCCGGCGGCGGCGG+TGG | 0.358129 | 8.3:-4716923 | None:intergenic |
ACTGTCATCTGCAGCACAAC+TGG | 0.364159 | 8.3:+4718609 | MS.gene26669:intron |
TGGCTACTTCAAAATGGAAA+TGG | 0.373295 | 8.3:+4719618 | MS.gene26669:CDS |
TGACCATGGCTACTTCAAAA+TGG | 0.374145 | 8.3:+4719612 | MS.gene26669:CDS |
GTTATTGTATGCAGAAAGAT+TGG | 0.377542 | 8.3:+4718009 | MS.gene26669:intron |
AGGTATAGTCAGTGAAGTTA+AGG | 0.383706 | 8.3:+4718040 | MS.gene26669:CDS |
CATGGAAAAGCAGCTTCTTC+AGG | 0.383850 | 8.3:+4716981 | MS.gene26669:CDS |
ACCTCAAATGCCACACTAAC+GGG | 0.384523 | 8.3:-4719258 | None:intergenic |
GCTGTTCTTGCTGTTGGGTA+TGG | 0.386199 | 8.3:+4719532 | MS.gene26669:CDS |
TGCGTGGCCACCGCCGCCGC+CGG | 0.394631 | 8.3:+4716916 | MS.gene26669:CDS |
GGCTACTTCAAAATGGAAAT+GGG | 0.395439 | 8.3:+4719619 | MS.gene26669:CDS |
AAACTCATGGGGAGGTGAAT+GGG | 0.395979 | 8.3:+4719588 | MS.gene26669:CDS |
TTTAATGTATTCAAAGGCTT+GGG | 0.400464 | 8.3:-4718748 | None:intergenic |
AATCATGCTGTTCTTGCTGT+TGG | 0.406771 | 8.3:+4719526 | MS.gene26669:CDS |
AACGTTGCTGTTCAAGTCCT+TGG | 0.409619 | 8.3:+4718846 | MS.gene26669:CDS |
TTCAATAACTTTGGCTGCAA+TGG | 0.411469 | 8.3:+4718714 | MS.gene26669:CDS |
ATTTAATGTATTCAAAGGCT+TGG | 0.415754 | 8.3:-4718749 | None:intergenic |
TTGAAGATGGTGTACCATAT+TGG | 0.416176 | 8.3:+4719557 | MS.gene26669:CDS |
TCCCGTTAGTGTGGCATTTG+AGG | 0.421683 | 8.3:+4719257 | MS.gene26669:CDS |
ATCATGCTGTTCTTGCTGTT+GGG | 0.423797 | 8.3:+4719527 | MS.gene26669:CDS |
TCCACGACTCCAATCCTATT+CGG | 0.426027 | 8.3:+4716947 | MS.gene26669:CDS |
CGTACCATTTAGGCCACAAC+AGG | 0.448204 | 8.3:-4719939 | None:intergenic |
AATAACTTTGGCTGCAATGG+TGG | 0.455761 | 8.3:+4718717 | MS.gene26669:CDS |
CAGAAAGATTGGAGGAAAGA+AGG | 0.463829 | 8.3:+4718020 | MS.gene26669:intron |
AAAACTCATGGGGAGGTGAA+TGG | 0.463951 | 8.3:+4719587 | MS.gene26669:CDS |
CAGCAGCTAGTGGACTGTGC+TGG | 0.465005 | 8.3:+4718687 | MS.gene26669:CDS |
ATGTCGGAGACCATCCGAAT+AGG | 0.466748 | 8.3:-4716961 | None:intergenic |
TCAGCTTACGCACAGGCCTT+CGG | 0.468118 | 8.3:+4718642 | MS.gene26669:CDS |
GCTGGTGCTTTCAATAACTT+TGG | 0.475033 | 8.3:+4718705 | MS.gene26669:CDS |
GAAGCTCAATCCGGCGGCGG+CGG | 0.484936 | 8.3:-4716926 | None:intergenic |
AATTGTTCTGCTACTCTCAA+GGG | 0.485400 | 8.3:+4717318 | MS.gene26669:CDS |
GTCAGTGAAGTTAAGGATCA+AGG | 0.494471 | 8.3:+4718047 | MS.gene26669:CDS |
TCTTTCTGAGCAGCAGCTAG+TGG | 0.496747 | 8.3:+4718677 | MS.gene26669:CDS |
ATTGTATTTAATGTATTCAA+AGG | 0.503015 | 8.3:-4718754 | None:intergenic |
TTGTTCATCCTATCCTGTTG+TGG | 0.503980 | 8.3:+4719926 | MS.gene26669:CDS |
GCTCGCTTTGCTAACAGATA+CGG | 0.506701 | 8.3:+4717036 | MS.gene26669:CDS |
TCTACTAATAAGAAACGTCT+TGG | 0.509184 | 8.3:+4717132 | MS.gene26669:CDS |
AAGGCCACTGCGGATCATGC+TGG | 0.516867 | 8.3:+4718066 | MS.gene26669:CDS |
CACCTCAAATGCCACACTAA+CGG | 0.517450 | 8.3:-4719259 | None:intergenic |
GGAGACCATCCGAATAGGAT+TGG | 0.519715 | 8.3:-4716956 | None:intergenic |
GACTTCAGATTATACAAGAA+AGG | 0.522674 | 8.3:+4719288 | MS.gene26669:CDS |
GAACAACATCGGTAATCCTA+TGG | 0.528082 | 8.3:-4717344 | None:intergenic |
TGTTGCTGACATACCTCGGC+AGG | 0.528653 | 8.3:-4717369 | None:intergenic |
AAATTGTTCTGCTACTCTCA+AGG | 0.532831 | 8.3:+4717317 | MS.gene26669:CDS |
GGAGTCGTGGAAGCTCAATC+CGG | 0.546963 | 8.3:-4716935 | None:intergenic |
CTACTCTCAAGGGGAACCAT+AGG | 0.552146 | 8.3:+4717328 | MS.gene26669:CDS |
TATTCGGATGGTCTCCGACA+TGG | 0.552839 | 8.3:+4716963 | MS.gene26669:CDS |
AAACGTCTTGGTTACACTCT+CGG | 0.554881 | 8.3:+4717144 | MS.gene26669:CDS |
CGATGTTGTTCTTCCTGCCG+AGG | 0.557356 | 8.3:+4717356 | MS.gene26669:CDS |
ATAACTTTGGCTGCAATGGT+GGG | 0.558078 | 8.3:+4718718 | MS.gene26669:CDS |
CATTTAGGCCACAACAGGAT+AGG | 0.558859 | 8.3:-4719934 | None:intergenic |
GTGGAAGCTCAATCCGGCGG+CGG | 0.560054 | 8.3:-4716929 | None:intergenic |
TCCGAATAGGATTGGAGTCG+TGG | 0.561061 | 8.3:-4716948 | None:intergenic |
AACTCATGGGGAGGTGAATG+GGG | 0.564340 | 8.3:+4719589 | MS.gene26669:CDS |
ATTGTATGCAGAAAGATTGG+AGG | 0.565149 | 8.3:+4718012 | MS.gene26669:intron |
AAGCAGCTTCTTCAGGTCAT+CGG | 0.576623 | 8.3:+4716988 | MS.gene26669:CDS |
ATGTATTCAAAGGCTTGGGA+TGG | 0.579188 | 8.3:-4718744 | None:intergenic |
TCTACGCTTCATTTCATCAA+CGG | 0.582909 | 8.3:-4717073 | None:intergenic |
AAGAGAGATATTCTTTCCGA+AGG | 0.583318 | 8.3:-4718658 | None:intergenic |
CGTTAGTGTGGCATTTGAGG+TGG | 0.585108 | 8.3:+4719260 | MS.gene26669:CDS |
CCACGCAGAAGAAAACGATA+AGG | 0.585441 | 8.3:-4716900 | None:intergenic |
CAATGGTGGCCTTGAGACAG+AGG | 0.588490 | 8.3:+4718773 | MS.gene26669:CDS |
TTTGAATACATTAAATACAA+TGG | 0.591214 | 8.3:+4718756 | MS.gene26669:CDS |
TTTGGAGTCAGCTTACGCAC+AGG | 0.591422 | 8.3:+4718635 | MS.gene26669:CDS |
GATATGCTTCCTCTGTCTCA+AGG | 0.591795 | 8.3:-4718782 | None:intergenic |
GTTGGGTATGGAATTGAAGA+TGG | 0.599047 | 8.3:+4719544 | MS.gene26669:CDS |
GAATACATTAAATACAATGG+TGG | 0.602840 | 8.3:+4718759 | MS.gene26669:CDS |
GAGGAAGCATATCCCTACAC+TGG | 0.603850 | 8.3:+4718792 | MS.gene26669:CDS |
AACTTGTGGCAACACACCCA+TGG | 0.613991 | 8.3:+4719326 | MS.gene26669:CDS |
GGAGGTGAATGGGGTGACCA+TGG | 0.614058 | 8.3:+4719598 | MS.gene26669:CDS |
CGACTCCAATCCTATTCGGA+TGG | 0.614891 | 8.3:+4716951 | MS.gene26669:CDS |
ATTGTTCTGCTACTCTCAAG+GGG | 0.626423 | 8.3:+4717319 | MS.gene26669:CDS |
TGGCTCTGTCAATATCACCT+TGG | 0.626940 | 8.3:+4718866 | MS.gene26669:CDS |
GCTACTTCAAAATGGAAATG+GGG | 0.626994 | 8.3:+4719620 | MS.gene26669:CDS |
GTCGTGGAAGCTCAATCCGG+CGG | 0.638778 | 8.3:-4716932 | None:intergenic |
GTTTACACTAGTACAACTTG+TGG | 0.641036 | 8.3:+4719312 | MS.gene26669:CDS |
GAGTTCAGAAGTCATAGACT+TGG | 0.649401 | 8.3:+4717285 | MS.gene26669:CDS |
AGCGAGCGAAAGAGACAGCG+TGG | 0.659831 | 8.3:-4717020 | None:intergenic |
AGGTGATATTGACAGAGCCA+AGG | 0.667399 | 8.3:-4718863 | None:intergenic |
CTCGGCAGGAAGAACAACAT+CGG | 0.700091 | 8.3:-4717355 | None:intergenic |
ATGTCCAGCATGATCCGCAG+TGG | 0.707970 | 8.3:-4718070 | None:intergenic |
GAAATGGGGAAGAATATGTG+CGG | 0.730027 | 8.3:+4719634 | MS.gene26669:CDS |
GTTAAGGATCAAGGCCACTG+CGG | 0.773436 | 8.3:+4718056 | MS.gene26669:CDS |
GAGAGTGAAAGATGGCACAG+TGG | 0.782503 | 8.3:+4716872 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAATTTAACAAATAGTTT+AGG | + | chr8.3:4719429-4719448 | MS.gene26669:intron | 10.0% |
!!! | TTTGTTTTTAATTTTGTTTT+GGG | + | chr8.3:4719188-4719207 | MS.gene26669:intron | 10.0% |
!!! | TTTTGTTTTTAATTTTGTTT+TGG | + | chr8.3:4719187-4719206 | MS.gene26669:intron | 10.0% |
!! | AAAAAGAAAATTAAAGTCAA+AGG | - | chr8.3:4717197-4717216 | None:intergenic | 15.0% |
!! | ATTGTATTTAATGTATTCAA+AGG | - | chr8.3:4718757-4718776 | None:intergenic | 15.0% |
!! | TTTGAATACATTAAATACAA+TGG | + | chr8.3:4718756-4718775 | MS.gene26669:CDS | 15.0% |
!!! | AAATTTTAAAGTATGAGTTT+TGG | + | chr8.3:4718150-4718169 | MS.gene26669:intron | 15.0% |
!!! | AATCATTTTTGTTTAATTTC+AGG | + | chr8.3:4719894-4719913 | MS.gene26669:intron | 15.0% |
!!! | ATTTTGATGATAAATGATTT+TGG | + | chr8.3:4717231-4717250 | MS.gene26669:intron | 15.0% |
!! | ATAGCTTATAGTAGTTTATA+TGG | + | chr8.3:4717648-4717667 | MS.gene26669:intron | 20.0% |
!! | CTGAGTTTATATTATTTAGT+TGG | + | chr8.3:4718993-4719012 | MS.gene26669:intron | 20.0% |
!! | CTTTCATTCCATAAAATTAT+TGG | - | chr8.3:4718367-4718386 | None:intergenic | 20.0% |
!! | TACAAATAAATTAGGACTTA+GGG | - | chr8.3:4718494-4718513 | None:intergenic | 20.0% |
!! | TTAAATTGTTTATTCAAACG+AGG | + | chr8.3:4717731-4717750 | MS.gene26669:intron | 20.0% |
!! | TTACAAATAAATTAGGACTT+AGG | - | chr8.3:4718495-4718514 | None:intergenic | 20.0% |
!! | TTCCATTCCATTAAAATTAT+TGG | - | chr8.3:4718411-4718430 | None:intergenic | 20.0% |
!!! | AAACTGTCCAATAATTTTAA+TGG | + | chr8.3:4718401-4718420 | MS.gene26669:intron | 20.0% |
!!! | TAAACTGTCCAATAATTTTA+TGG | + | chr8.3:4718356-4718375 | MS.gene26669:intron | 20.0% |
!!! | TAAGTTATTTCTATAACTGA+AGG | - | chr8.3:4717695-4717714 | None:intergenic | 20.0% |
!!! | TACTATAAGCTATTTTCATA+AGG | - | chr8.3:4717641-4717660 | None:intergenic | 20.0% |
!!! | TGTTATTCCATTTTCTTATT+GGG | + | chr8.3:4717818-4717837 | MS.gene26669:intron | 20.0% |
! | AATAAGTAAATTGCATTCTG+AGG | + | chr8.3:4717959-4717978 | MS.gene26669:intron | 25.0% |
! | AATCAAACATATGATTACCA+AGG | - | chr8.3:4718886-4718905 | None:intergenic | 25.0% |
! | ACAAATAAATTAGGACTTAG+GGG | - | chr8.3:4718493-4718512 | None:intergenic | 25.0% |
! | ACTATGTTAATTTCTTGTGT+TGG | + | chr8.3:4718959-4718978 | MS.gene26669:intron | 25.0% |
! | ATTCAAATTTCGTTAACTTC+TGG | - | chr8.3:4719489-4719508 | None:intergenic | 25.0% |
! | ATTTAATGTATTCAAAGGCT+TGG | - | chr8.3:4718752-4718771 | None:intergenic | 25.0% |
! | CAAAAATGATTAGCAAAAAC+AGG | - | chr8.3:4719885-4719904 | None:intergenic | 25.0% |
! | CAATAAGAAAATGGAATAAC+AGG | - | chr8.3:4717819-4717838 | None:intergenic | 25.0% |
! | CACTTGGTTACAAATAAATT+AGG | - | chr8.3:4718502-4718521 | None:intergenic | 25.0% |
! | GAAATTAATGCTAACATACA+CGG | - | chr8.3:4717852-4717871 | None:intergenic | 25.0% |
! | GAATACATTAAATACAATGG+TGG | + | chr8.3:4718759-4718778 | MS.gene26669:CDS | 25.0% |
! | TAACGAAATTTGAATTTGTC+TGG | + | chr8.3:4719494-4719513 | MS.gene26669:intron | 25.0% |
! | TAGTTAACAAATACATCATG+CGG | - | chr8.3:4718918-4718937 | None:intergenic | 25.0% |
! | TCACAAACAAATATGAACAA+CGG | - | chr8.3:4717939-4717958 | None:intergenic | 25.0% |
! | TGACAGTCTAATATTAATTG+TGG | - | chr8.3:4717909-4717928 | None:intergenic | 25.0% |
! | TTAACAAAAGAGTTAAGATC+CGG | - | chr8.3:4719668-4719687 | None:intergenic | 25.0% |
! | TTCAAATTTCGTTAACTTCT+GGG | - | chr8.3:4719488-4719507 | None:intergenic | 25.0% |
! | TTGAATTAAACACTAGATTG+AGG | - | chr8.3:4719382-4719401 | None:intergenic | 25.0% |
! | TTTAATGTATTCAAAGGCTT+GGG | - | chr8.3:4718751-4718770 | None:intergenic | 25.0% |
! | TTTCTGCATACAATAACAAA+AGG | - | chr8.3:4718006-4718025 | None:intergenic | 25.0% |
!! | CTGTTATTCCATTTTCTTAT+TGG | + | chr8.3:4717817-4717836 | MS.gene26669:intron | 25.0% |
!! | TAATCATTTAATCTGAAGTG+CGG | - | chr8.3:4717769-4717788 | None:intergenic | 25.0% |
!! | TCTTGATGATTAAATAACTG+TGG | + | chr8.3:4719723-4719742 | MS.gene26669:intron | 25.0% |
!! | TTTTCAGATGTAAATTTGCA+GGG | - | chr8.3:4718828-4718847 | None:intergenic | 25.0% |
!!! | AATAGTTTAGGTTGAATCTA+TGG | + | chr8.3:4719441-4719460 | MS.gene26669:intron | 25.0% |
!!! | GTCCAATAATTTTAATGGAA+TGG | + | chr8.3:4718406-4718425 | MS.gene26669:intron | 25.0% |
!!! | TTAATTTTGTTTTGGGTGTA+GGG | + | chr8.3:4719195-4719214 | MS.gene26669:intron | 25.0% |
!!! | TTTAATTTTGTTTTGGGTGT+AGG | + | chr8.3:4719194-4719213 | MS.gene26669:intron | 25.0% |
AAAGTGCAACTTCATACAAA+GGG | - | chr8.3:4718569-4718588 | None:intergenic | 30.0% | |
AAATTCAGTTGAAGAATGAC+AGG | - | chr8.3:4717874-4717893 | None:intergenic | 30.0% | |
AACTATAGCATAGACACTTA+TGG | - | chr8.3:4717541-4717560 | None:intergenic | 30.0% | |
AATTAAACACTAGATTGAGG+AGG | - | chr8.3:4719379-4719398 | None:intergenic | 30.0% | |
ATCTAATATAGATGAAGTCG+AGG | - | chr8.3:4719160-4719179 | None:intergenic | 30.0% | |
GACTTCAGATTATACAAGAA+AGG | + | chr8.3:4719288-4719307 | MS.gene26669:CDS | 30.0% | |
GTTATTGTATGCAGAAAGAT+TGG | + | chr8.3:4718009-4718028 | MS.gene26669:intron | 30.0% | |
TAAAGTGCAACTTCATACAA+AGG | - | chr8.3:4718570-4718589 | None:intergenic | 30.0% | |
TAACAAAAGAGTTAAGATCC+GGG | - | chr8.3:4719667-4719686 | None:intergenic | 30.0% | |
TAAGTAGTAATCAAGTGTGT+TGG | + | chr8.3:4717479-4717498 | MS.gene26669:intron | 30.0% | |
TCAAATTTCGTTAACTTCTG+GGG | - | chr8.3:4719487-4719506 | None:intergenic | 30.0% | |
TCCTACATAACACAATCTAA+AGG | - | chr8.3:4719755-4719774 | None:intergenic | 30.0% | |
TCTACTAATAAGAAACGTCT+TGG | + | chr8.3:4717132-4717151 | MS.gene26669:CDS | 30.0% | |
TGATTAAATAACTGTGGCAA+AGG | + | chr8.3:4719729-4719748 | MS.gene26669:intron | 30.0% | |
TGATTGCTCAAAGAAAAAGT+TGG | - | chr8.3:4718221-4718240 | None:intergenic | 30.0% | |
TTGGCTCATTAAAAACTCAT+GGG | + | chr8.3:4719576-4719595 | MS.gene26669:CDS | 30.0% | |
TTTGCGTCTTTGTGAAAATA+TGG | + | chr8.3:4719798-4719817 | MS.gene26669:intron | 30.0% | |
! | AAAGTTGGCTTATAAACCAA+AGG | - | chr8.3:4718206-4718225 | None:intergenic | 30.0% |
! | AAGGCATTAATTTGAGAAAG+TGG | - | chr8.3:4718536-4718555 | None:intergenic | 30.0% |
! | ATATTTTCACAAAGACGCAA+AGG | - | chr8.3:4719799-4719818 | None:intergenic | 30.0% |
! | ATTGGCTCATTAAAAACTCA+TGG | + | chr8.3:4719575-4719594 | MS.gene26669:CDS | 30.0% |
! | GAGTTTTTAATGAGCCAATA+TGG | - | chr8.3:4719574-4719593 | None:intergenic | 30.0% |
! | GTTTTCAGATGTAAATTTGC+AGG | - | chr8.3:4718829-4718848 | None:intergenic | 30.0% |
AAATTGTTCTGCTACTCTCA+AGG | + | chr8.3:4717317-4717336 | MS.gene26669:CDS | 35.0% | |
AAGAGAGATATTCTTTCCGA+AGG | - | chr8.3:4718661-4718680 | None:intergenic | 35.0% | |
AATTGTTCTGCTACTCTCAA+GGG | + | chr8.3:4717318-4717337 | MS.gene26669:CDS | 35.0% | |
AGGTATAGTCAGTGAAGTTA+AGG | + | chr8.3:4718040-4718059 | MS.gene26669:CDS | 35.0% | |
ATCAAGATCCAAGACAGAAA+AGG | - | chr8.3:4719710-4719729 | None:intergenic | 35.0% | |
ATTCACATTATGTGCTCGTA+TGG | + | chr8.3:4719074-4719093 | MS.gene26669:intron | 35.0% | |
ATTGTATGCAGAAAGATTGG+AGG | + | chr8.3:4718012-4718031 | MS.gene26669:intron | 35.0% | |
CAAGACAGAAAAGGACAATT+GGG | - | chr8.3:4719701-4719720 | None:intergenic | 35.0% | |
GAAATTTGAATTTGTCTGGC+AGG | + | chr8.3:4719498-4719517 | MS.gene26669:intron | 35.0% | |
GCCTTTAGATTGTGTTATGT+AGG | + | chr8.3:4719751-4719770 | MS.gene26669:intron | 35.0% | |
GCTACTTCAAAATGGAAATG+GGG | + | chr8.3:4719620-4719639 | MS.gene26669:CDS | 35.0% | |
GGCTACTTCAAAATGGAAAT+GGG | + | chr8.3:4719619-4719638 | MS.gene26669:CDS | 35.0% | |
GGCTTATAAACCAAAGGATA+GGG | - | chr8.3:4718200-4718219 | None:intergenic | 35.0% | |
GTTTACACTAGTACAACTTG+TGG | + | chr8.3:4719312-4719331 | MS.gene26669:CDS | 35.0% | |
TACAAAGGGTTGAATCTCAA+AGG | - | chr8.3:4718555-4718574 | None:intergenic | 35.0% | |
TATAGCATAGACACTTATGG+TGG | - | chr8.3:4717538-4717557 | None:intergenic | 35.0% | |
TCTACGCTTCATTTCATCAA+CGG | - | chr8.3:4717076-4717095 | None:intergenic | 35.0% | |
TGGCTACTTCAAAATGGAAA+TGG | + | chr8.3:4719618-4719637 | MS.gene26669:CDS | 35.0% | |
TGGCTCATTAAAAACTCATG+GGG | + | chr8.3:4719577-4719596 | MS.gene26669:CDS | 35.0% | |
TGGCTTATAAACCAAAGGAT+AGG | - | chr8.3:4718201-4718220 | None:intergenic | 35.0% | |
TGTCGTATTATGAGCTAGTT+TGG | + | chr8.3:4717420-4717439 | MS.gene26669:intron | 35.0% | |
TTCAATAACTTTGGCTGCAA+TGG | + | chr8.3:4718714-4718733 | MS.gene26669:CDS | 35.0% | |
TTGAAGATGGTGTACCATAT+TGG | + | chr8.3:4719557-4719576 | MS.gene26669:CDS | 35.0% | |
! | AGTGGTGAAATTTTTGCACT+TGG | - | chr8.3:4718518-4718537 | None:intergenic | 35.0% |
! | CAGTGTCATTGTTACAGATA+TGG | - | chr8.3:4718593-4718612 | None:intergenic | 35.0% |
! | GAGAGTTTTTGCAAGAACTT+AGG | + | chr8.3:4717564-4717583 | MS.gene26669:intron | 35.0% |
! | TTCCATTTTCTTATTGGGTC+TGG | + | chr8.3:4717823-4717842 | MS.gene26669:intron | 35.0% |
!! | AATGAGCATTGTGCTCTTTT+TGG | - | chr8.3:4719031-4719050 | None:intergenic | 35.0% |
!! | AGATTTTGCTGATTGGACTT+GGG | + | chr8.3:4717260-4717279 | MS.gene26669:intron | 35.0% |
!!! | ACTTAAGTGTTGTTTTCGTC+AGG | - | chr8.3:4717464-4717483 | None:intergenic | 35.0% |
!!! | TTTCCATTTTGAAGTAGCCA+TGG | - | chr8.3:4719618-4719637 | None:intergenic | 35.0% |
AAACGTCTTGGTTACACTCT+CGG | + | chr8.3:4717144-4717163 | MS.gene26669:CDS | 40.0% | |
AATAACTTTGGCTGCAATGG+TGG | + | chr8.3:4718717-4718736 | MS.gene26669:CDS | 40.0% | |
AGGGTTTCAAGAGGTTAAGA+TGG | - | chr8.3:4718181-4718200 | None:intergenic | 40.0% | |
ATAACTTTGGCTGCAATGGT+GGG | + | chr8.3:4718718-4718737 | MS.gene26669:CDS | 40.0% | |
ATGTATTCAAAGGCTTGGGA+TGG | - | chr8.3:4718747-4718766 | None:intergenic | 40.0% | |
ATTGTTCTGCTACTCTCAAG+GGG | + | chr8.3:4717319-4717338 | MS.gene26669:CDS | 40.0% | |
CACCAGACCCAATAAGAAAA+TGG | - | chr8.3:4717828-4717847 | None:intergenic | 40.0% | |
CAGAAAGATTGGAGGAAAGA+AGG | + | chr8.3:4718020-4718039 | MS.gene26669:intron | 40.0% | |
CCAAGACAGAAAAGGACAAT+TGG | - | chr8.3:4719702-4719721 | None:intergenic | 40.0% | |
CTCATTAAAAACTCATGGGG+AGG | + | chr8.3:4719580-4719599 | MS.gene26669:CDS | 40.0% | |
GAAATGGGGAAGAATATGTG+CGG | + | chr8.3:4719634-4719653 | MS.gene26669:CDS | 40.0% | |
GAACAACATCGGTAATCCTA+TGG | - | chr8.3:4717347-4717366 | None:intergenic | 40.0% | |
GAGTTCAGAAGTCATAGACT+TGG | + | chr8.3:4717285-4717304 | MS.gene26669:CDS | 40.0% | |
GCTGGTGCTTTCAATAACTT+TGG | + | chr8.3:4718705-4718724 | MS.gene26669:CDS | 40.0% | |
GTCAGTGAAGTTAAGGATCA+AGG | + | chr8.3:4718047-4718066 | MS.gene26669:CDS | 40.0% | |
GTTGGGTATGGAATTGAAGA+TGG | + | chr8.3:4719544-4719563 | MS.gene26669:CDS | 40.0% | |
TATCCCTACACTGGACAAAA+TGG | + | chr8.3:4718801-4718820 | MS.gene26669:CDS | 40.0% | |
TATTGCAGAACACTCACCAT+GGG | - | chr8.3:4719345-4719364 | None:intergenic | 40.0% | |
TGACCATGGCTACTTCAAAA+TGG | + | chr8.3:4719612-4719631 | MS.gene26669:CDS | 40.0% | |
TTGTTCATCCTATCCTGTTG+TGG | + | chr8.3:4719926-4719945 | MS.gene26669:CDS | 40.0% | |
! | AACTAACAACAGCTCTAGCA+AGG | - | chr8.3:4719824-4719843 | None:intergenic | 40.0% |
! | AATCATGCTGTTCTTGCTGT+TGG | + | chr8.3:4719526-4719545 | MS.gene26669:CDS | 40.0% |
! | CCAATTGTCCTTTTCTGTCT+TGG | + | chr8.3:4719699-4719718 | MS.gene26669:intron | 40.0% |
! | GAGTTGCAGATTTTGCTGAT+TGG | + | chr8.3:4717253-4717272 | MS.gene26669:intron | 40.0% |
!! | ATCATGCTGTTCTTGCTGTT+GGG | + | chr8.3:4719527-4719546 | MS.gene26669:CDS | 40.0% |
!! | CAGATTTTGCTGATTGGACT+TGG | + | chr8.3:4717259-4717278 | MS.gene26669:intron | 40.0% |
!!! | AAGAAGCTGCTTTTCCATGT+CGG | - | chr8.3:4716980-4716999 | None:intergenic | 40.0% |
AAAACTCATGGGGAGGTGAA+TGG | + | chr8.3:4719587-4719606 | MS.gene26669:CDS | 45.0% | |
AAACTCATGGGGAGGTGAAT+GGG | + | chr8.3:4719588-4719607 | MS.gene26669:CDS | 45.0% | |
AAGCAGCTTCTTCAGGTCAT+CGG | + | chr8.3:4716988-4717007 | MS.gene26669:CDS | 45.0% | |
AATATGTGCGGTAAGGATCC+CGG | + | chr8.3:4719646-4719665 | MS.gene26669:intron | 45.0% | |
ACCTCAAATGCCACACTAAC+GGG | - | chr8.3:4719261-4719280 | None:intergenic | 45.0% | |
AGGTGATATTGACAGAGCCA+AGG | - | chr8.3:4718866-4718885 | None:intergenic | 45.0% | |
CACCTCAAATGCCACACTAA+CGG | - | chr8.3:4719262-4719281 | None:intergenic | 45.0% | |
CAGAAAAGGACAATTGGGTG+AGG | - | chr8.3:4719696-4719715 | None:intergenic | 45.0% | |
CAGTTGTTGCTGACATACCT+CGG | - | chr8.3:4717376-4717395 | None:intergenic | 45.0% | |
CATGGAAAAGCAGCTTCTTC+AGG | + | chr8.3:4716981-4717000 | MS.gene26669:CDS | 45.0% | |
CCAAAGGATAGGGTTTCAAG+AGG | - | chr8.3:4718190-4718209 | None:intergenic | 45.0% | |
CCACGCAGAAGAAAACGATA+AGG | - | chr8.3:4716903-4716922 | None:intergenic | 45.0% | |
CCTCTTGAAACCCTATCCTT+TGG | + | chr8.3:4718187-4718206 | MS.gene26669:intron | 45.0% | |
CTATTGCAGAACACTCACCA+TGG | - | chr8.3:4719346-4719365 | None:intergenic | 45.0% | |
GATATGCTTCCTCTGTCTCA+AGG | - | chr8.3:4718785-4718804 | None:intergenic | 45.0% | |
GCTCGCTTTGCTAACAGATA+CGG | + | chr8.3:4717036-4717055 | MS.gene26669:CDS | 45.0% | |
GTAGTTGCTCTGTAGAGACA+TGG | + | chr8.3:4719115-4719134 | MS.gene26669:intron | 45.0% | |
GTCTCTACAGAGCAACTACA+AGG | - | chr8.3:4719114-4719133 | None:intergenic | 45.0% | |
TCCACGACTCCAATCCTATT+CGG | + | chr8.3:4716947-4716966 | MS.gene26669:CDS | 45.0% | |
! | AACGTTGCTGTTCAAGTCCT+TGG | + | chr8.3:4718846-4718865 | MS.gene26669:CDS | 45.0% |
! | CCTTATCGTTTTCTTCTGCG+TGG | + | chr8.3:4716900-4716919 | MS.gene26669:CDS | 45.0% |
! | CTGAAGTGCGGATGCTATTT+AGG | - | chr8.3:4717757-4717776 | None:intergenic | 45.0% |
! | CTGACTGTGAGGAGCTATTT+TGG | + | chr8.3:4718105-4718124 | MS.gene26669:intron | 45.0% |
! | GCATAGACACTTATGGTGGA+AGG | - | chr8.3:4717534-4717553 | None:intergenic | 45.0% |
! | GGACCATTTTGTCCAGTGTA+GGG | - | chr8.3:4718807-4718826 | None:intergenic | 45.0% |
! | TCTGGGGAAGCATATCATGA+TGG | - | chr8.3:4719471-4719490 | None:intergenic | 45.0% |
! | TCTGGTGTCTAAAACCGAGA+TGG | - | chr8.3:4717507-4717526 | None:intergenic | 45.0% |
! | TGGCTCTGTCAATATCACCT+TGG | + | chr8.3:4718866-4718885 | MS.gene26669:CDS | 45.0% |
!! | TTTTGCTGATTGGACTTGGG+AGG | + | chr8.3:4717263-4717282 | MS.gene26669:CDS | 45.0% |
AACTCATGGGGAGGTGAATG+GGG | + | chr8.3:4719589-4719608 | MS.gene26669:CDS | 50.0% | |
AACTTGTGGCAACACACCCA+TGG | + | chr8.3:4719326-4719345 | MS.gene26669:CDS | 50.0% | |
ACTGTCATCTGCAGCACAAC+TGG | + | chr8.3:4718609-4718628 | MS.gene26669:intron | 50.0% | |
ATGTCGGAGACCATCCGAAT+AGG | - | chr8.3:4716964-4716983 | None:intergenic | 50.0% | |
CGACTCCAATCCTATTCGGA+TGG | + | chr8.3:4716951-4716970 | MS.gene26669:CDS | 50.0% | |
CGTTAGTGTGGCATTTGAGG+TGG | + | chr8.3:4719260-4719279 | MS.gene26669:CDS | 50.0% | |
CTACTCTCAAGGGGAACCAT+AGG | + | chr8.3:4717328-4717347 | MS.gene26669:CDS | 50.0% | |
CTCGGCAGGAAGAACAACAT+CGG | - | chr8.3:4717358-4717377 | None:intergenic | 50.0% | |
GGAGACCATCCGAATAGGAT+TGG | - | chr8.3:4716959-4716978 | None:intergenic | 50.0% | |
GGGGAAGAATATGTGCGGTA+AGG | + | chr8.3:4719639-4719658 | MS.gene26669:intron | 50.0% | |
GTTAAGGATCAAGGCCACTG+CGG | + | chr8.3:4718056-4718075 | MS.gene26669:CDS | 50.0% | |
TATTCGGATGGTCTCCGACA+TGG | + | chr8.3:4716963-4716982 | MS.gene26669:CDS | 50.0% | |
TCCCGTTAGTGTGGCATTTG+AGG | + | chr8.3:4719257-4719276 | MS.gene26669:CDS | 50.0% | |
TCCGAATAGGATTGGAGTCG+TGG | - | chr8.3:4716951-4716970 | None:intergenic | 50.0% | |
TCTTTCTGAGCAGCAGCTAG+TGG | + | chr8.3:4718677-4718696 | MS.gene26669:CDS | 50.0% | |
! | CAGGTTGCTTTCTGACTGTG+AGG | + | chr8.3:4718094-4718113 | MS.gene26669:intron | 50.0% |
! | CTTATGGTGGAAGGTGTGTC+TGG | - | chr8.3:4717525-4717544 | None:intergenic | 50.0% |
! | GAGGAAGCATATCCCTACAC+TGG | + | chr8.3:4718792-4718811 | MS.gene26669:CDS | 50.0% |
! | GGGACCATTTTGTCCAGTGT+AGG | - | chr8.3:4718808-4718827 | None:intergenic | 50.0% |
! | TTTGGAGTCAGCTTACGCAC+AGG | + | chr8.3:4718635-4718654 | MS.gene26669:CDS | 50.0% |
! | TTTTGCTCGTCCCGTTAGTG+TGG | + | chr8.3:4719248-4719267 | MS.gene26669:CDS | 50.0% |
!! | CAAGTGTGTTGGTGCCATCT+CGG | + | chr8.3:4717490-4717509 | MS.gene26669:intron | 50.0% |
!! | GCTGTTCTTGCTGTTGGGTA+TGG | + | chr8.3:4719532-4719551 | MS.gene26669:CDS | 50.0% |
ATGTCCAGCATGATCCGCAG+TGG | - | chr8.3:4718073-4718092 | None:intergenic | 55.0% | |
CGATGTTGTTCTTCCTGCCG+AGG | + | chr8.3:4717356-4717375 | MS.gene26669:CDS | 55.0% | |
CTGCAGCACAACTGGAGCTT+TGG | + | chr8.3:4718617-4718636 | MS.gene26669:intron | 55.0% | |
GCGGATCATGCTGGACATTC+AGG | + | chr8.3:4718075-4718094 | MS.gene26669:CDS | 55.0% | |
GGAGTCGTGGAAGCTCAATC+CGG | - | chr8.3:4716938-4716957 | None:intergenic | 55.0% | |
TCAGCTTACGCACAGGCCTT+CGG | + | chr8.3:4718642-4718661 | MS.gene26669:CDS | 55.0% | |
TGTTGCTGACATACCTCGGC+AGG | - | chr8.3:4717372-4717391 | None:intergenic | 55.0% | |
! | CAATGGTGGCCTTGAGACAG+AGG | + | chr8.3:4718773-4718792 | MS.gene26669:CDS | 55.0% |
!!! | GTTTTGGGTGTAGGGTGCTG+AGG | + | chr8.3:4719203-4719222 | MS.gene26669:intron | 55.0% |
AAGGCCACTGCGGATCATGC+TGG | + | chr8.3:4718066-4718085 | MS.gene26669:CDS | 60.0% | |
AGCGAGCGAAAGAGACAGCG+TGG | - | chr8.3:4717023-4717042 | None:intergenic | 60.0% | |
GGAGGTGAATGGGGTGACCA+TGG | + | chr8.3:4719598-4719617 | MS.gene26669:CDS | 60.0% | |
GTCGTGGAAGCTCAATCCGG+CGG | - | chr8.3:4716935-4716954 | None:intergenic | 60.0% | |
!! | CAGCAGCTAGTGGACTGTGC+TGG | + | chr8.3:4718687-4718706 | MS.gene26669:CDS | 60.0% |
GTGGAAGCTCAATCCGGCGG+CGG | - | chr8.3:4716932-4716951 | None:intergenic | 65.0% | |
GAAGCTCAATCCGGCGGCGG+CGG | - | chr8.3:4716929-4716948 | None:intergenic | 70.0% | |
! | GCTCAATCCGGCGGCGGCGG+TGG | - | chr8.3:4716926-4716945 | None:intergenic | 80.0% |
! | TGCGTGGCCACCGCCGCCGC+CGG | + | chr8.3:4716916-4716935 | MS.gene26669:CDS | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 4716883 | 4719953 | 4716883 | ID=MS.gene26669 |
chr8.3 | mRNA | 4716883 | 4719953 | 4716883 | ID=MS.gene26669.t1;Parent=MS.gene26669 |
chr8.3 | exon | 4716883 | 4717174 | 4716883 | ID=MS.gene26669.t1.exon1;Parent=MS.gene26669.t1 |
chr8.3 | CDS | 4716883 | 4717174 | 4716883 | ID=cds.MS.gene26669.t1;Parent=MS.gene26669.t1 |
chr8.3 | exon | 4717262 | 4717377 | 4717262 | ID=MS.gene26669.t1.exon2;Parent=MS.gene26669.t1 |
chr8.3 | CDS | 4717262 | 4717377 | 4717262 | ID=cds.MS.gene26669.t1;Parent=MS.gene26669.t1 |
chr8.3 | exon | 4718023 | 4718096 | 4718023 | ID=MS.gene26669.t1.exon3;Parent=MS.gene26669.t1 |
chr8.3 | CDS | 4718023 | 4718096 | 4718023 | ID=cds.MS.gene26669.t1;Parent=MS.gene26669.t1 |
chr8.3 | exon | 4718623 | 4718887 | 4718623 | ID=MS.gene26669.t1.exon4;Parent=MS.gene26669.t1 |
chr8.3 | CDS | 4718623 | 4718887 | 4718623 | ID=cds.MS.gene26669.t1;Parent=MS.gene26669.t1 |
chr8.3 | exon | 4719216 | 4719347 | 4719216 | ID=MS.gene26669.t1.exon5;Parent=MS.gene26669.t1 |
chr8.3 | CDS | 4719216 | 4719347 | 4719216 | ID=cds.MS.gene26669.t1;Parent=MS.gene26669.t1 |
chr8.3 | exon | 4719520 | 4719655 | 4719520 | ID=MS.gene26669.t1.exon6;Parent=MS.gene26669.t1 |
chr8.3 | CDS | 4719520 | 4719655 | 4719520 | ID=cds.MS.gene26669.t1;Parent=MS.gene26669.t1 |
chr8.3 | exon | 4719916 | 4719953 | 4719916 | ID=MS.gene26669.t1.exon7;Parent=MS.gene26669.t1 |
chr8.3 | CDS | 4719916 | 4719953 | 4719916 | ID=cds.MS.gene26669.t1;Parent=MS.gene26669.t1 |
Gene Sequence |
Protein sequence |