AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34090.t1 MTR_1g094135 97.113 381 11 0 1 381 1 381 0.0 781
MS.gene34090.t1 MTR_1g023210 52.151 372 168 4 1 370 1 364 1.71e-140 404
MS.gene34090.t1 MTR_4g071060 53.482 359 156 6 15 370 10 360 3.69e-140 403
MS.gene34090.t1 MTR_4g073660 43.288 365 162 7 8 370 6 327 4.96e-100 300
MS.gene34090.t1 MTR_4g072790 43.443 366 156 9 8 370 7 324 3.32e-99 298
MS.gene34090.t1 MTR_4g072340 43.380 355 157 6 17 370 17 328 1.82e-98 296
MS.gene34090.t1 MTR_3g116080 36.857 350 191 8 22 363 17 344 1.32e-62 204
MS.gene34090.t1 MTR_4g079440 34.626 361 205 10 15 367 8 345 1.60e-61 201
MS.gene34090.t1 MTR_4g107930 35.112 356 196 10 20 363 9 341 4.00e-59 195
MS.gene34090.t1 MTR_5g022560 34.734 357 198 10 19 363 7 340 8.21e-59 194
MS.gene34090.t1 MTR_4g047610 36.025 322 176 8 54 363 36 339 8.34e-59 194
MS.gene34090.t1 MTR_4g079470 36.499 337 177 11 35 358 24 336 1.38e-57 191
MS.gene34090.t1 MTR_4g079770 36.585 328 173 11 44 358 31 336 1.47e-57 191
MS.gene34090.t1 MTR_4g080730 35.207 338 176 9 37 358 21 331 2.95e-57 190
MS.gene34090.t1 MTR_4g094918 32.718 379 198 11 1 363 1 338 9.32e-57 189
MS.gene34090.t1 MTR_4g125300 37.812 320 172 9 56 368 51 350 2.37e-56 188
MS.gene34090.t1 MTR_2g016180 36.449 321 172 12 56 363 51 352 5.22e-56 191
MS.gene34090.t1 MTR_4g065077 33.422 374 209 11 2 362 6 352 5.33e-56 187
MS.gene34090.t1 MTR_4g080700 35.168 327 169 9 48 358 32 331 5.46e-56 187
MS.gene34090.t1 MTR_4g079800 34.535 333 183 11 44 363 31 341 2.33e-55 186
MS.gene34090.t1 MTR_1g107550 35.988 339 181 12 35 358 30 347 2.75e-55 189
MS.gene34090.t1 MTR_4g104370 34.320 338 192 10 34 358 15 335 2.99e-55 186
MS.gene34090.t1 MTR_2g090890 35.443 316 171 9 53 358 36 328 5.61e-55 184
MS.gene34090.t1 MTR_2g016270 35.826 321 159 12 56 363 51 337 1.30e-54 187
MS.gene34090.t1 MTR_1g018840 33.602 372 203 10 5 358 8 353 4.96e-54 185
MS.gene34090.t1 MTR_1g018840 33.602 372 203 10 5 358 8 353 5.74e-54 185
MS.gene34090.t1 MTR_8g086470 32.703 370 201 11 2 362 22 352 1.57e-53 181
MS.gene34090.t1 MTR_2g015850 38.768 276 143 10 100 367 107 364 1.19e-52 179
MS.gene34090.t1 MTR_3g075390 32.544 338 199 10 34 358 15 336 1.92e-52 178
MS.gene34090.t1 MTR_3g112430 34.769 325 181 11 52 363 32 338 2.96e-51 177
MS.gene34090.t1 MTR_3g102220 35.667 300 155 10 76 358 75 353 9.10e-51 177
MS.gene34090.t1 MTR_2g083930 34.036 332 181 10 54 367 33 344 1.48e-49 170
MS.gene34090.t1 MTR_2g075830 35.016 317 163 12 59 358 42 332 7.07e-49 168
MS.gene34090.t1 MTR_4g080360 34.891 321 173 12 55 360 36 335 1.06e-48 168
MS.gene34090.t1 MTR_2g015920 29.211 380 202 13 12 360 9 352 1.09e-46 164
MS.gene34090.t1 MTR_2g067900 33.735 332 183 12 50 363 10 322 8.42e-46 160
MS.gene34090.t1 MTR_7g078600 37.131 237 126 7 137 367 119 338 3.16e-44 156
MS.gene34090.t1 MTR_2g015930 30.163 368 213 12 12 359 8 351 9.75e-44 155
MS.gene34090.t1 MTR_7g079230 31.288 326 186 11 45 358 28 327 1.74e-43 154
MS.gene34090.t1 MTR_2g067560 33.429 350 185 16 50 373 10 337 2.02e-40 152
MS.gene34090.t1 MTR_8g087510 47.015 134 62 1 182 315 23 147 4.05e-40 140
MS.gene34090.t1 MTR_1g023810 39.286 224 114 8 138 357 46 251 5.17e-39 140
MS.gene34090.t1 MTR_2g066980 31.642 335 152 14 54 363 32 314 2.01e-33 127
MS.gene34090.t1 MTR_2g064475 28.962 366 192 13 50 372 10 350 2.92e-33 127
MS.gene34090.t1 MTR_7g078630 34.715 193 99 6 137 315 762 941 1.69e-24 105
MS.gene34090.t1 MTR_1g025450 39.655 116 58 3 136 248 50 156 2.66e-19 89.7
MS.gene34090.t1 MTR_2g015840 35.862 145 83 5 59 194 36 179 8.83e-17 80.1
MS.gene34090.t1 MTR_7g078310 40.741 108 55 2 137 242 148 248 2.17e-16 79.0
MS.gene34090.t1 MTR_7g111050 26.420 352 204 15 49 366 5 335 9.70e-16 78.2
MS.gene34090.t1 MTR_2g047960 43.478 92 44 1 145 236 2 85 3.61e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34090.t1 AT3G54940 70.118 338 93 2 35 364 23 360 0.0 511
MS.gene34090.t1 AT2G21430 56.495 331 138 4 34 363 29 354 2.72e-139 401
MS.gene34090.t1 AT4G39090 57.362 326 134 4 48 370 43 366 6.17e-138 398
MS.gene34090.t1 AT4G16190 56.418 335 137 6 43 372 42 372 2.84e-131 381
MS.gene34090.t1 AT3G54940 66.142 254 78 2 35 280 23 276 4.78e-123 357
MS.gene34090.t1 AT1G20850 38.750 320 164 8 56 363 51 350 1.85e-66 214
MS.gene34090.t1 AT4G35350 34.341 364 210 8 8 363 7 349 1.35e-62 204
MS.gene34090.t1 AT5G60360 38.109 349 178 10 34 368 34 358 3.11e-62 204
MS.gene34090.t1 AT5G60360 38.166 338 171 10 34 357 34 347 4.61e-60 198
MS.gene34090.t1 AT3G45310 35.979 378 204 14 7 368 3 358 9.48e-60 197
MS.gene34090.t1 AT5G60360 37.822 349 178 11 34 368 34 357 1.04e-59 197
MS.gene34090.t1 AT1G29090 38.924 316 158 12 59 358 50 346 1.48e-59 197
MS.gene34090.t1 AT5G45890 37.576 330 168 11 46 358 29 337 1.61e-59 196
MS.gene34090.t1 AT1G06260 36.471 340 181 11 38 363 21 339 6.84e-58 192
MS.gene34090.t1 AT3G45310 35.792 366 197 14 7 356 3 346 2.30e-57 191
MS.gene34090.t1 AT5G43060 33.424 368 201 13 5 358 8 345 1.01e-56 192
MS.gene34090.t1 AT3G19400 35.777 341 182 12 38 363 27 345 1.64e-55 186
MS.gene34090.t1 AT4G36880 34.568 324 172 10 76 380 73 375 2.19e-55 186
MS.gene34090.t1 AT1G47128 37.584 298 146 9 76 358 72 344 5.11e-55 188
MS.gene34090.t1 AT3G19390 36.228 334 163 13 51 363 38 342 3.09e-54 186
MS.gene34090.t1 AT2G34080 35.583 326 161 12 55 358 38 336 8.66e-54 181
MS.gene34090.t1 AT5G50260 37.124 299 161 7 71 358 52 334 3.01e-53 181
MS.gene34090.t1 AT1G29080 36.991 319 169 12 59 363 42 342 5.34e-53 179
MS.gene34090.t1 AT1G09850 35.647 317 177 9 56 363 32 330 6.86e-53 181
MS.gene34090.t1 AT4G23520 33.746 323 186 9 51 363 42 346 1.06e-52 179
MS.gene34090.t1 AT3G48340 35.224 335 172 12 46 358 24 335 1.41e-52 179
MS.gene34090.t1 AT4G11320 35.556 315 172 9 56 358 56 351 4.52e-50 172
MS.gene34090.t1 AT4G11320 35.556 315 172 9 56 358 56 351 4.52e-50 172
MS.gene34090.t1 AT3G49340 33.333 327 175 12 54 361 33 335 8.31e-50 171
MS.gene34090.t1 AT3G43960 36.424 302 171 8 56 351 41 327 1.77e-49 171
MS.gene34090.t1 AT4G11310 35.312 320 166 10 56 358 49 344 1.82e-49 171
MS.gene34090.t1 AT3G48350 31.680 363 209 12 33 377 13 354 2.26e-48 168
MS.gene34090.t1 AT2G27420 32.229 332 173 10 54 358 33 339 5.01e-48 166
MS.gene34090.t1 AT4G35350 33.571 280 172 4 8 285 7 274 1.10e-47 164
MS.gene34090.t1 AT1G29110 33.016 315 166 11 59 358 41 325 3.33e-41 148
MS.gene34090.t1 AT3G19400 35.433 254 148 7 38 285 27 270 6.22e-41 146
MS.gene34090.t1 AT3G48350 31.321 265 157 8 33 285 13 264 9.75e-34 127
MS.gene34090.t1 AT1G02305 27.148 291 167 13 103 366 69 341 7.06e-15 75.9
MS.gene34090.t1 AT4G01610 25.532 282 167 12 103 358 66 330 4.44e-14 73.2
MS.gene34090.t1 AT4G01610 25.177 282 168 12 103 358 66 330 4.93e-13 70.1
MS.gene34090.t1 AT1G02300 26.068 234 135 9 158 369 144 361 8.91e-12 66.2

Find 91 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTAAATAAGCAGCAATT+TGG 0.276229 1.2:+74457908 None:intergenic
CACAAGGTTTCTCGATTCTT+AGG 0.295720 1.2:-74457549 MS.gene34090:CDS
GCTTGAGGCTGGTGGATTAG+AGG 0.315848 1.2:-74458037 MS.gene34090:CDS
TTCCCTTGTAGAGTAAGTTT+TGG 0.331460 1.2:+74459144 None:intergenic
GAATTCTTGATGATCCAATA+TGG 0.338546 1.2:+74457514 None:intergenic
AGCCTCAAGCAAATAATTAT+AGG 0.341198 1.2:+74458050 None:intergenic
CCGCCATGAAAACTTGATTC+AGG 0.341418 1.2:-74459248 MS.gene34090:CDS
AACAGAACTAGGTAGCTAAT+AGG 0.375008 1.2:+74457360 None:intergenic
TGGCGAGGTTGCACCGCCCT+TGG 0.393236 1.2:-74458948 MS.gene34090:CDS
GATAAGACATCATGTGATAA+TGG 0.394339 1.2:-74458099 MS.gene34090:CDS
GGCGGTGAAACGCAGTTGAT+AGG 0.395575 1.2:+74459266 None:intergenic
GGCTTCGCAAGAAACCATAT+TGG 0.397056 1.2:-74457528 MS.gene34090:CDS
CTTGATCCAACCGCAATTCA+TGG 0.398823 1.2:-74459058 MS.gene34090:CDS
TATAATTATTTGCTTGAGGC+TGG 0.400349 1.2:-74458048 MS.gene34090:CDS
GTTCTCATCCACAGGTAGAT+TGG 0.415931 1.2:+74457930 None:intergenic
AGGGTAAATGTGGATCTTGC+TGG 0.419704 1.2:-74458457 MS.gene34090:CDS
ATTCTCTTGCTACATATAAG+AGG 0.422987 1.2:+74457607 None:intergenic
GGTTGCACCGCCCTTGGATG+TGG 0.428740 1.2:-74458942 MS.gene34090:CDS
CGGTTCTATACCGGTGTTAG+AGG 0.429375 1.2:-74458995 MS.gene34090:CDS
CTTGGATGTGGAAGGATTGC+CGG 0.431739 1.2:-74458930 MS.gene34090:CDS
AAGAGTATTTACTACGCCTT+GGG 0.438150 1.2:-74459123 MS.gene34090:CDS
TGCTGGGCTTTCAGCACTAC+AGG 0.442971 1.2:-74458440 MS.gene34090:CDS
ATACCCGTACACTGGTGGTA+AGG 0.455502 1.2:-74458004 MS.gene34090:CDS
AGCACTACAGGATCTATAGA+AGG 0.470148 1.2:-74458428 MS.gene34090:CDS
GAGTTTGAGCGGTTCTATAC+CGG 0.478459 1.2:-74459004 MS.gene34090:CDS
GAAGAGTATTTACTACGCCT+TGG 0.482670 1.2:-74459124 MS.gene34090:CDS
GAATTTCGATTGGAGGGAGA+AGG 0.483095 1.2:-74458906 MS.gene34090:CDS
AATTTCGATTGGAGGGAGAA+GGG 0.491914 1.2:-74458905 MS.gene34090:CDS
TCATGTGATAATGGTTGTAA+TGG 0.500611 1.2:-74458090 MS.gene34090:CDS
TGCCGGAGAATTTCGATTGG+AGG 0.504986 1.2:-74458913 MS.gene34090:CDS
TCCCTCCAATCGAAATTCTC+CGG 0.505325 1.2:+74458911 None:intergenic
GCCGGAGAATTTCGATTGGA+GGG 0.506193 1.2:-74458912 MS.gene34090:CDS
CGGCAATCCTTCCACATCCA+AGG 0.507533 1.2:+74458931 None:intergenic
ACTCCAAAACTTACTCTACA+AGG 0.509081 1.2:-74459147 MS.gene34090:CDS
AACCACGGTGTATTGCTTGT+GGG 0.510752 1.2:-74457580 MS.gene34090:CDS
TACAAGCTTTGCAGAGGGCA+TGG 0.513945 1.2:-74457460 MS.gene34090:CDS
AATTATTTGCTTGAGGCTGG+TGG 0.514952 1.2:-74458045 MS.gene34090:CDS
GCAATTTGGTTCTCATCCAC+AGG 0.515183 1.2:+74457922 None:intergenic
TTCTATACCGGTGTTAGAGG+TGG 0.515332 1.2:-74458992 MS.gene34090:CDS
TGCCTATAATTATTTGCTTG+AGG 0.515816 1.2:-74458052 MS.gene34090:CDS
GGTGGATTCCCCTCGAGAAA+CGG 0.519839 1.2:-74458974 MS.gene34090:CDS
GATTGCCGGAGAATTTCGAT+TGG 0.521822 1.2:-74458916 MS.gene34090:CDS
TTCATGCAAACTTACATTGG+TGG 0.523262 1.2:-74457640 MS.gene34090:CDS
TCACCCTTACCACCAGTGTA+CGG 0.527618 1.2:+74458000 None:intergenic
CACCCTTACCACCAGTGTAC+GGG 0.533213 1.2:+74458001 None:intergenic
GCTGCTTATTTAGTTAATCA+CGG 0.543083 1.2:-74457901 MS.gene34090:CDS
GCGGTGAAACGCAGTTGATA+GGG 0.543444 1.2:+74459267 None:intergenic
GGCAATCCTTCCACATCCAA+GGG 0.544410 1.2:+74458932 None:intergenic
CACAATGGTTTCTGCTGCAA+TGG 0.544762 1.2:-74457422 MS.gene34090:CDS
AATGGTTTCTGCTGCAATGG+TGG 0.547337 1.2:-74457419 MS.gene34090:CDS
GAACCACGGTGTATTGCTTG+TGG 0.550119 1.2:-74457581 MS.gene34090:CDS
CTTGTGGGTTATAATGCACA+AGG 0.551826 1.2:-74457565 MS.gene34090:CDS
ATTTCGATTGGAGGGAGAAG+GGG 0.553540 1.2:-74458904 MS.gene34090:CDS
GCACCGCCCTTGGATGTGGA+AGG 0.555789 1.2:-74458938 MS.gene34090:CDS
GGGTAAATGTGGATCTTGCT+GGG 0.557750 1.2:-74458456 MS.gene34090:CDS
TTGCGGTTGGATCAAGTGCT+TGG 0.562169 1.2:+74459065 None:intergenic
CGCCAACTCCGTTTCTCGAG+GGG 0.564041 1.2:+74458966 None:intergenic
TTTCGATTGGAGGGAGAAGG+GGG 0.564832 1.2:-74458903 MS.gene34090:CDS
AAACACGTGAGAGATATGAT+TGG 0.566506 1.2:+74459322 None:intergenic
TAAGGGGACTTACTTGCAAG+TGG 0.568709 1.2:+74457877 None:intergenic
CTCGCCAACTCCGTTTCTCG+AGG 0.568856 1.2:+74458964 None:intergenic
TTGGATCATCAAGAATTCGT+GGG 0.578311 1.2:-74457509 MS.gene34090:CDS
TACCCGTACACTGGTGGTAA+GGG 0.579815 1.2:-74458003 MS.gene34090:CDS
TTCCCCTCGAGAAACGGAGT+TGG 0.586466 1.2:-74458968 MS.gene34090:CDS
TTCTCTTGCTACATATAAGA+GGG 0.587349 1.2:+74457608 None:intergenic
TCGCCAACTCCGTTTCTCGA+GGG 0.588026 1.2:+74458965 None:intergenic
CTCGAGAAACGGAGTTGGCG+AGG 0.594223 1.2:-74458963 MS.gene34090:CDS
GTAACACCATGAATTGCGGT+TGG 0.604723 1.2:+74459052 None:intergenic
ATTGGATCATCAAGAATTCG+TGG 0.604812 1.2:-74457510 MS.gene34090:CDS
TGTTACTGGAGTCAAGATGC+AGG 0.607732 1.2:-74458879 MS.gene34090:intron
GGGGAATCCACCTCTAACAC+CGG 0.613162 1.2:+74458985 None:intergenic
TGCAGAGGGCATGGTATGTG+TGG 0.615133 1.2:-74457451 MS.gene34090:CDS
TCTTAGTGAACAACAGCTTG+TGG 0.616431 1.2:-74458372 MS.gene34090:CDS
GGGTATTACAAGCTTTGCAG+AGG 0.620670 1.2:-74457466 MS.gene34090:CDS
GCTTGTGGACTGTGACAGCA+AGG 0.622428 1.2:-74458357 MS.gene34090:intron
CTCCAAAACTTACTCTACAA+GGG 0.624411 1.2:-74459146 MS.gene34090:CDS
GAAACTTCATACCCGTACAC+TGG 0.628584 1.2:-74458012 MS.gene34090:CDS
GGTATTACAAGCTTTGCAGA+GGG 0.636304 1.2:-74457465 MS.gene34090:CDS
CTGAGTAACACCATGAATTG+CGG 0.643000 1.2:+74459048 None:intergenic
TGTGATAATGGTTGTAATGG+AGG 0.643668 1.2:-74458087 MS.gene34090:CDS
GTTCTCTGATCTCTCTGACG+AGG 0.654499 1.2:-74459026 MS.gene34090:CDS
TGAGGCTGGTGGATTAGAGG+AGG 0.654720 1.2:-74458034 MS.gene34090:CDS
ACTTCATACCCGTACACTGG+TGG 0.657388 1.2:-74458009 MS.gene34090:CDS
AATCCTTCCACATCCAAGGG+CGG 0.664048 1.2:+74458935 None:intergenic
TTGATAGGGTTAGAGCGTAG+AGG 0.669135 1.2:+74459281 None:intergenic
TGGATCATCAAGAATTCGTG+GGG 0.675621 1.2:-74457508 MS.gene34090:CDS
AAATTTCACCAATCTACCTG+TGG 0.676633 1.2:-74457938 MS.gene34090:CDS
TCTCTGACGAGGAGTTTGAG+CGG 0.687292 1.2:-74459015 MS.gene34090:CDS
AGCAAGAGAATGCTGAACCA+CGG 0.698635 1.2:-74457595 MS.gene34090:CDS
AACCCACAAGCAATACACCG+TGG 0.800815 1.2:+74457578 None:intergenic
TATGTGTGGAATGAACACAA+TGG 0.864374 1.2:-74457437 MS.gene34090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATAAAAAAA+TGG - chr1.2:74458183-74458202 MS.gene34090:intron 0.0%
!!! AAATTAAACAGTTTTTATTT+AGG + chr1.2:74458226-74458245 None:intergenic 10.0%
!! AATGTGATATTTATAGTAAT+AGG - chr1.2:74457975-74457994 MS.gene34090:CDS 15.0%
!! AGAACTTTGTAATTAATTAA+GGG + chr1.2:74458852-74458871 None:intergenic 15.0%
!! TAGAACTTTGTAATTAATTA+AGG + chr1.2:74458853-74458872 None:intergenic 15.0%
!!! TATTTATGTTTCTAATGATT+AGG - chr1.2:74458106-74458125 MS.gene34090:CDS 15.0%
!!! TTGTTTTTTTATTTACAATG+AGG - chr1.2:74458018-74458037 MS.gene34090:CDS 15.0%
!! AACTTAAATAAATTACATCC+CGG + chr1.2:74458132-74458151 None:intergenic 20.0%
!! AAGTATAGAACATAGTTAAT+TGG + chr1.2:74458430-74458449 None:intergenic 20.0%
!! GAACTTTGTAATTAATTAAG+GGG + chr1.2:74458851-74458870 None:intergenic 20.0%
!!! AAACTGTTTAATTTTGAAAC+AGG - chr1.2:74458232-74458251 MS.gene34090:intron 20.0%
!!! AACTGTTTAATTTTGAAACA+GGG - chr1.2:74458233-74458252 MS.gene34090:intron 20.0%
!!! TAATCTTCTGTTTTATTAAC+TGG - chr1.2:74458541-74458560 MS.gene34090:intron 20.0%
!!! TTATTTAGGATAATGTTTCA+TGG + chr1.2:74458212-74458231 None:intergenic 20.0%
! CAAACTAGAAATTTCAAACA+TGG + chr1.2:74457904-74457923 None:intergenic 25.0%
! TAACTAAATAAGCAGCAATT+TGG + chr1.2:74458804-74458823 None:intergenic 25.0%
!!! ATTTTGACTGCAATTTTCTT+TGG + chr1.2:74458748-74458767 None:intergenic 25.0%
!!! CATGTTTGAAATTTCTAGTT+TGG - chr1.2:74457902-74457921 MS.gene34090:CDS 25.0%
AGCCTCAAGCAAATAATTAT+AGG + chr1.2:74458662-74458681 None:intergenic 30.0%
ATTCTCTTGCTACATATAAG+AGG + chr1.2:74459105-74459124 None:intergenic 30.0%
GATAAGACATCATGTGATAA+TGG - chr1.2:74458610-74458629 MS.gene34090:intron 30.0%
GCTGCTTATTTAGTTAATCA+CGG - chr1.2:74458808-74458827 MS.gene34090:intron 30.0%
TATAATTATTTGCTTGAGGC+TGG - chr1.2:74458661-74458680 MS.gene34090:intron 30.0%
TGCCTATAATTATTTGCTTG+AGG - chr1.2:74458657-74458676 MS.gene34090:intron 30.0%
TTCTCTTGCTACATATAAGA+GGG + chr1.2:74459104-74459123 None:intergenic 30.0%
! GAATTCTTGATGATCCAATA+TGG + chr1.2:74459198-74459217 None:intergenic 30.0%
! GTTTTCATGCAAACTTACAT+TGG - chr1.2:74459066-74459085 MS.gene34090:CDS 30.0%
! TATGTTTCTAATGATTAGGC+CGG - chr1.2:74458110-74458129 MS.gene34090:CDS 30.0%
!! TCATGTGATAATGGTTGTAA+TGG - chr1.2:74458619-74458638 MS.gene34090:intron 30.0%
!!! ATTTTGAAACAGGGTAAATG+TGG - chr1.2:74458242-74458261 MS.gene34090:intron 30.0%
AAACACGTGAGAGATATGAT+TGG + chr1.2:74457390-74457409 None:intergenic 35.0%
AAATTTCACCAATCTACCTG+TGG - chr1.2:74458771-74458790 MS.gene34090:intron 35.0%
ACTCCAAAACTTACTCTACA+AGG - chr1.2:74457562-74457581 MS.gene34090:CDS 35.0%
ATTGGATCATCAAGAATTCG+TGG - chr1.2:74459199-74459218 MS.gene34090:CDS 35.0%
CTCCAAAACTTACTCTACAA+GGG - chr1.2:74457563-74457582 MS.gene34090:CDS 35.0%
GAGAAAAATGGGGAGAAAAA+GGG - chr1.2:74459223-74459242 MS.gene34090:CDS 35.0%
GATGAATTGCGAAACTTAGA+CGG - chr1.2:74458889-74458908 MS.gene34090:CDS 35.0%
TATGTGTGGAATGAACACAA+TGG - chr1.2:74459272-74459291 MS.gene34090:CDS 35.0%
TGTTATGTCACACTTGACAA+AGG + chr1.2:74458590-74458609 None:intergenic 35.0%
TTCATGCAAACTTACATTGG+TGG - chr1.2:74459069-74459088 MS.gene34090:CDS 35.0%
TTGGATCATCAAGAATTCGT+GGG - chr1.2:74459200-74459219 MS.gene34090:CDS 35.0%
! AAGATTAGCAAGAGCATAGT+TGG + chr1.2:74458528-74458547 None:intergenic 35.0%
! ATGTTTCTAATGATTAGGCC+GGG - chr1.2:74458111-74458130 MS.gene34090:CDS 35.0%
! CATCCTGAATCAAGTTTTCA+TGG + chr1.2:74457467-74457486 None:intergenic 35.0%
! TGGGATTTTTGCCAAAAACT+TGG - chr1.2:74457605-74457624 MS.gene34090:CDS 35.0%
! TTCCCTTGTAGAGTAAGTTT+TGG + chr1.2:74457568-74457587 None:intergenic 35.0%
! TTTTCCTGTGGCAAGAAAAT+TGG + chr1.2:74458309-74458328 None:intergenic 35.0%
!! AAGAGTATTTACTACGCCTT+GGG - chr1.2:74457586-74457605 MS.gene34090:CDS 35.0%
!! TGTGATAATGGTTGTAATGG+AGG - chr1.2:74458622-74458641 MS.gene34090:intron 35.0%
!!! AGTTTTTGGCAAAAATCCCA+AGG + chr1.2:74457605-74457624 None:intergenic 35.0%
!!! GCATATGATTTGTTTTCAGC+AGG + chr1.2:74459327-74459346 None:intergenic 35.0%
AACTCTAATCATGTGCAGTG+GGG - chr1.2:74459034-74459053 MS.gene34090:CDS 40.0%
AATTATTTGCTTGAGGCTGG+TGG - chr1.2:74458664-74458683 MS.gene34090:intron 40.0%
AATTCGTGGGGAGAAAAATG+GGG - chr1.2:74459213-74459232 MS.gene34090:CDS 40.0%
AATTTCGATTGGAGGGAGAA+GGG - chr1.2:74457804-74457823 MS.gene34090:intron 40.0%
AGAATTCGTGGGGAGAAAAA+TGG - chr1.2:74459211-74459230 MS.gene34090:CDS 40.0%
AGCACTACAGGATCTATAGA+AGG - chr1.2:74458281-74458300 MS.gene34090:intron 40.0%
CAAAAACTTGGTCAAAGCTG+TGG - chr1.2:74457617-74457636 MS.gene34090:CDS 40.0%
CACAAGGTTTCTCGATTCTT+AGG - chr1.2:74459160-74459179 MS.gene34090:CDS 40.0%
CTGAGTAACACCATGAATTG+CGG + chr1.2:74457664-74457683 None:intergenic 40.0%
GAACTCTAATCATGTGCAGT+GGG - chr1.2:74459033-74459052 MS.gene34090:CDS 40.0%
GAATTCGTGGGGAGAAAAAT+GGG - chr1.2:74459212-74459231 MS.gene34090:CDS 40.0%
GGAGAAAAATGGGGAGAAAA+AGG - chr1.2:74459222-74459241 MS.gene34090:CDS 40.0%
GGTATTACAAGCTTTGCAGA+GGG - chr1.2:74459244-74459263 MS.gene34090:CDS 40.0%
TCTTAGTGAACAACAGCTTG+TGG - chr1.2:74458337-74458356 MS.gene34090:intron 40.0%
TGAACTCTAATCATGTGCAG+TGG - chr1.2:74459032-74459051 MS.gene34090:CDS 40.0%
TGGATCATCAAGAATTCGTG+GGG - chr1.2:74459201-74459220 MS.gene34090:CDS 40.0%
! AAGACTGAGTAGTTTTCCTG+TGG + chr1.2:74458321-74458340 None:intergenic 40.0%
! CCTGAATCAAGTTTTCATGG+CGG + chr1.2:74457464-74457483 None:intergenic 40.0%
! CTTGTGGGTTATAATGCACA+AGG - chr1.2:74459144-74459163 MS.gene34090:CDS 40.0%
!! CACAGCTTTGACCAAGTTTT+TGG + chr1.2:74457619-74457638 None:intergenic 40.0%
!! GAAGAGTATTTACTACGCCT+TGG - chr1.2:74457585-74457604 MS.gene34090:CDS 40.0%
AACCACGGTGTATTGCTTGT+GGG - chr1.2:74459129-74459148 MS.gene34090:CDS 45.0%
AATGGTTTCTGCTGCAATGG+TGG - chr1.2:74459290-74459309 MS.gene34090:CDS 45.0%
ACTCTAATCATGTGCAGTGG+GGG - chr1.2:74459035-74459054 MS.gene34090:CDS 45.0%
AGCAAGAGAATGCTGAACCA+CGG - chr1.2:74459114-74459133 MS.gene34090:CDS 45.0%
AGGGTAAATGTGGATCTTGC+TGG - chr1.2:74458252-74458271 MS.gene34090:intron 45.0%
ATTTCGATTGGAGGGAGAAG+GGG - chr1.2:74457805-74457824 MS.gene34090:intron 45.0%
CACAATGGTTTCTGCTGCAA+TGG - chr1.2:74459287-74459306 MS.gene34090:CDS 45.0%
CCGCCATGAAAACTTGATTC+AGG - chr1.2:74457461-74457480 MS.gene34090:CDS 45.0%
CTATGTAACACCGACACTTC+AGG + chr1.2:74458967-74458986 None:intergenic 45.0%
CTTGATCCAACCGCAATTCA+TGG - chr1.2:74457651-74457670 MS.gene34090:CDS 45.0%
GAAACTTCATACCCGTACAC+TGG - chr1.2:74458697-74458716 MS.gene34090:intron 45.0%
GAATTTCGATTGGAGGGAGA+AGG - chr1.2:74457803-74457822 MS.gene34090:intron 45.0%
GAGTTTGAGCGGTTCTATAC+CGG - chr1.2:74457705-74457724 MS.gene34090:intron 45.0%
GATTGCCGGAGAATTTCGAT+TGG - chr1.2:74457793-74457812 MS.gene34090:intron 45.0%
GGCTTCGCAAGAAACCATAT+TGG - chr1.2:74459181-74459200 MS.gene34090:CDS 45.0%
GGGTAAATGTGGATCTTGCT+GGG - chr1.2:74458253-74458272 MS.gene34090:intron 45.0%
GGGTATTACAAGCTTTGCAG+AGG - chr1.2:74459243-74459262 MS.gene34090:CDS 45.0%
GTAACACCATGAATTGCGGT+TGG + chr1.2:74457660-74457679 None:intergenic 45.0%
GTTCTCATCCACAGGTAGAT+TGG + chr1.2:74458782-74458801 None:intergenic 45.0%
TAAGGGGACTTACTTGCAAG+TGG + chr1.2:74458835-74458854 None:intergenic 45.0%
TCCCTCCAATCGAAATTCTC+CGG + chr1.2:74457801-74457820 None:intergenic 45.0%
TGTTACTGGAGTCAAGATGC+AGG - chr1.2:74457830-74457849 MS.gene34090:intron 45.0%
TTGATAGGGTTAGAGCGTAG+AGG + chr1.2:74457431-74457450 None:intergenic 45.0%
! TTCTATACCGGTGTTAGAGG+TGG - chr1.2:74457717-74457736 MS.gene34090:intron 45.0%
!! GCAATTTGGTTCTCATCCAC+AGG + chr1.2:74458790-74458809 None:intergenic 45.0%
AACCCACAAGCAATACACCG+TGG + chr1.2:74459134-74459153 None:intergenic 50.0%
AATCCTTCCACATCCAAGGG+CGG + chr1.2:74457777-74457796 None:intergenic 50.0%
ACTTCATACCCGTACACTGG+TGG - chr1.2:74458700-74458719 MS.gene34090:intron 50.0%
ATACCCGTACACTGGTGGTA+AGG - chr1.2:74458705-74458724 MS.gene34090:intron 50.0%
ATGTGCAGTGGGGGTAAATG+CGG - chr1.2:74459044-74459063 MS.gene34090:CDS 50.0%
CTCCGACAAACCTGAAGTGT+CGG - chr1.2:74458954-74458973 MS.gene34090:CDS 50.0%
CTTGGATGTGGAAGGATTGC+CGG - chr1.2:74457779-74457798 MS.gene34090:intron 50.0%
GAACCACGGTGTATTGCTTG+TGG - chr1.2:74459128-74459147 MS.gene34090:CDS 50.0%
GCCGGAGAATTTCGATTGGA+GGG - chr1.2:74457797-74457816 MS.gene34090:intron 50.0%
GGCAATCCTTCCACATCCAA+GGG + chr1.2:74457780-74457799 None:intergenic 50.0%
GTTCTCTGATCTCTCTGACG+AGG - chr1.2:74457683-74457702 MS.gene34090:intron 50.0%
TACAAGCTTTGCAGAGGGCA+TGG - chr1.2:74459249-74459268 MS.gene34090:CDS 50.0%
TACCCGTACACTGGTGGTAA+GGG - chr1.2:74458706-74458725 MS.gene34090:intron 50.0%
TCACCCTTACCACCAGTGTA+CGG + chr1.2:74458712-74458731 None:intergenic 50.0%
TCTCTGACGAGGAGTTTGAG+CGG - chr1.2:74457694-74457713 MS.gene34090:intron 50.0%
TGCCGGAGAATTTCGATTGG+AGG - chr1.2:74457796-74457815 MS.gene34090:intron 50.0%
TTGCGGTTGGATCAAGTGCT+TGG + chr1.2:74457647-74457666 None:intergenic 50.0%
TTTCGATTGGAGGGAGAAGG+GGG - chr1.2:74457806-74457825 MS.gene34090:intron 50.0%
! CACCGACACTTCAGGTTTGT+CGG + chr1.2:74458959-74458978 None:intergenic 50.0%
! CGGTTCTATACCGGTGTTAG+AGG - chr1.2:74457714-74457733 MS.gene34090:intron 50.0%
! GCGGTGAAACGCAGTTGATA+GGG + chr1.2:74457445-74457464 None:intergenic 50.0%
! GGAGCCAATTTTCTTGCCAC+AGG - chr1.2:74458302-74458321 MS.gene34090:intron 50.0%
CACCCTTACCACCAGTGTAC+GGG + chr1.2:74458711-74458730 None:intergenic 55.0%
CGGCAATCCTTCCACATCCA+AGG + chr1.2:74457781-74457800 None:intergenic 55.0%
GGCGGTGAAACGCAGTTGAT+AGG + chr1.2:74457446-74457465 None:intergenic 55.0%
GGGGAATCCACCTCTAACAC+CGG + chr1.2:74457727-74457746 None:intergenic 55.0%
TCGCCAACTCCGTTTCTCGA+GGG + chr1.2:74457747-74457766 None:intergenic 55.0%
TGCTGGGCTTTCAGCACTAC+AGG - chr1.2:74458269-74458288 MS.gene34090:intron 55.0%
TTCCCCTCGAGAAACGGAGT+TGG - chr1.2:74457741-74457760 MS.gene34090:intron 55.0%
! GCTTGTGGACTGTGACAGCA+AGG - chr1.2:74458352-74458371 MS.gene34090:intron 55.0%
! GGTGGATTCCCCTCGAGAAA+CGG - chr1.2:74457735-74457754 MS.gene34090:intron 55.0%
! TGCAGAGGGCATGGTATGTG+TGG - chr1.2:74459258-74459277 MS.gene34090:CDS 55.0%
!! GCTTGAGGCTGGTGGATTAG+AGG - chr1.2:74458672-74458691 MS.gene34090:intron 55.0%
!! TGAGGCTGGTGGATTAGAGG+AGG - chr1.2:74458675-74458694 MS.gene34090:intron 55.0%
AGGGAGAAGGGGGCTGTTAC+TGG - chr1.2:74457816-74457835 MS.gene34090:intron 60.0%
CGCCAACTCCGTTTCTCGAG+GGG + chr1.2:74457746-74457765 None:intergenic 60.0%
CTCGAGAAACGGAGTTGGCG+AGG - chr1.2:74457746-74457765 MS.gene34090:intron 60.0%
CTCGCCAACTCCGTTTCTCG+AGG + chr1.2:74457748-74457767 None:intergenic 60.0%
GCACCGCCCTTGGATGTGGA+AGG - chr1.2:74457771-74457790 MS.gene34090:intron 65.0%
GGTTGCACCGCCCTTGGATG+TGG - chr1.2:74457767-74457786 MS.gene34090:intron 65.0%
TGGCGAGGTTGCACCGCCCT+TGG - chr1.2:74457761-74457780 MS.gene34090:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 74457375 74459356 74457375 ID=MS.gene34090
chr1.2 mRNA 74457375 74459356 74457375 ID=MS.gene34090.t1;Parent=MS.gene34090
chr1.2 exon 74458880 74459356 74458880 ID=MS.gene34090.t1.exon1;Parent=MS.gene34090.t1
chr1.2 CDS 74458880 74459356 74458880 ID=cds.MS.gene34090.t1;Parent=MS.gene34090.t1
chr1.2 exon 74458358 74458477 74458358 ID=MS.gene34090.t1.exon2;Parent=MS.gene34090.t1
chr1.2 CDS 74458358 74458477 74458358 ID=cds.MS.gene34090.t1;Parent=MS.gene34090.t1
chr1.2 exon 74457890 74458133 74457890 ID=MS.gene34090.t1.exon3;Parent=MS.gene34090.t1
chr1.2 CDS 74457890 74458133 74457890 ID=cds.MS.gene34090.t1;Parent=MS.gene34090.t1
chr1.2 exon 74457375 74457679 74457375 ID=MS.gene34090.t1.exon4;Parent=MS.gene34090.t1
chr1.2 CDS 74457375 74457679 74457375 ID=cds.MS.gene34090.t1;Parent=MS.gene34090.t1
Gene Sequence

>MS.gene34090

ATGGTAACAAAACCAATCATATCTCTCACGTGTTTTGCACGTGTTACAATCTTCCTCTACGCTCTAACCCTATCAACTGCGTTTCACCGCCATGAAAACTTGATTCAGGATGTAGCTAAAAAGCTTGAACTCAAAGACAACGAGCTTCTGAAAACTGAGAAGAAGTTCAAAGTTTTCATGCAAGATTACTCCAAAACTTACTCTACAAGGGAAGAGTATTTACTACGCCTTGGGATTTTTGCCAAAAACTTGGTCAAAGCTGTGGAACACCAAGCACTTGATCCAACCGCAATTCATGGTGTTACTCAGTTCTCTGATCTCTCTGACGAGGAGTTTGAGCGGTTCTATACCGGTGTTAGAGGTGGATTCCCCTCGAGAAACGGAGTTGGCGAGGTTGCACCGCCCTTGGATGTGGAAGGATTGCCGGAGAATTTCGATTGGAGGGAGAAGGGGGCTGTTACTGGAGTCAAGATGCAGGTACATGCATGAGTTTATTATATATGCTAATTTGATTCAACTACACATTCCATGTTTGAAATTTCTAGTTTGGTTAATATGAAGTATTTGAAAACTGTAGAATTAGATAAATAAAATGAAAACAATGTGATATTTATAGTAATAGGAATATGATAAAACTTAGTTTTTGTTTTTTTATTTACAATGAGGATAAGACTTAGTTCAAGTTGTTTACATTTTTCATTAGAATACTAAAAAAAATGTGAAGTTATTTCTATTTATGTTTCTAATGATTAGGCCGGGATGTAATTTATTTAAGTTTTAATTTTTATATGCTGTTTCTCATTTCTTTTAAATAAATAAATAAAAAAATGGTGTCCATGAAACATTATCCTAAATAAAAACTGTTTAATTTTGAAACAGGGTAAATGTGGATCTTGCTGGGCTTTCAGCACTACAGGATCTATAGAAGGAGCCAATTTTCTTGCCACAGGAAAACTACTCAGTCTTAGTGAACAACAGCTTGTGGACTGTGACAGCAAGGTATATAAGCATCTCTATGTTTATGACTTTTTCATTGAAGACACTTATTGTCACCAATTAACTATGTTCTATACTTCAAAATATGATAGAATGAATAAATTTTTTTCAATTTTATTAGATAAATTTTTGATGAATTTCTCAATGATTCAAGCCAACTATGCTCTTGCTAATCTTCTGTTTTATTAACTGGATATTTCTTGTTCTACTATTTTGCCTTTGTCAAGTGTGACATAACAGATAAGACATCATGTGATAATGGTTGTAATGGAGGTCTTATGACAAATGCCTATAATTATTTGCTTGAGGCTGGTGGATTAGAGGAGGAAACTTCATACCCGTACACTGGTGGTAAGGGTGAATGCAAGTTTGATCCAAAGAAAATTGCAGTCAAAATCACAAATTTCACCAATCTACCTGTGGATGAGAACCAAATTGCTGCTTATTTAGTTAATCACGGTCCACTTGCAAGTAAGTCCCCTTAATTAATTACAAAGTTCTAACATATATGCATGTGTGATGAATTGCGAAACTTAGACGGACACTCACATTGATTGAATGTAATCACATGCAACACATCAGACTCCGACAAACCTGAAGTGTCGGTGTTACATAGTATGCGCGACATTAATTTGTCGATCTTTAATGTTTAAATTGATCATGAACTCTAATCATGTGCAGTGGGGGTAAATGCGGTTTTCATGCAAACTTACATTGGTGGTGTATCATGCCCTCTTATATGTAGCAAGAGAATGCTGAACCACGGTGTATTGCTTGTGGGTTATAATGCACAAGGTTTCTCGATTCTTAGGCTTCGCAAGAAACCATATTGGATCATCAAGAATTCGTGGGGAGAAAAATGGGGAGAAAAAGGGTATTACAAGCTTTGCAGAGGGCATGGTATGTGTGGAATGAACACAATGGTTTCTGCTGCAATGGTGGCTCAAACACAACCTGCTGAAAACAAATCATATGCTTCCTATTAG
Protein sequence

>MS.gene34090.t1

MVTKPIISLTCFARVTIFLYALTLSTAFHRHENLIQDVAKKLELKDNELLKTEKKFKVFMQDYSKTYSTREEYLLRLGIFAKNLVKAVEHQALDPTAIHGVTQFSDLSDEEFERFYTGVRGGFPSRNGVGEVAPPLDVEGLPENFDWREKGAVTGVKMQGKCGSCWAFSTTGSIEGANFLATGKLLSLSEQQLVDCDSKCDITDKTSCDNGCNGGLMTNAYNYLLEAGGLEEETSYPYTGGKGECKFDPKKIAVKITNFTNLPVDENQIAAYLVNHGPLAMGVNAVFMQTYIGGVSCPLICSKRMLNHGVLLVGYNAQGFSILRLRKKPYWIIKNSWGEKWGEKGYYKLCRGHGMCGMNTMVSAAMVAQTQPAENKSYASY