Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26670.t1 | ABF18679.1 | 98.3 | 350 | 3 | 1 | 1 | 347 | 1 | 350 | 2.00E-201 | 711.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26670.t1 | Q8RWQ9 | 72.9 | 350 | 87 | 3 | 5 | 347 | 10 | 358 | 7.7e-154 | 544.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26670.t1 | Q1KK73 | 98.3 | 350 | 3 | 1 | 1 | 347 | 1 | 350 | 1.4e-201 | 711.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26670.t1 | MTR_4g125300 | 97.429 | 350 | 6 | 1 | 1 | 347 | 1 | 350 | 0.0 | 711 |
| MS.gene26670.t1 | MTR_3g075390 | 38.356 | 365 | 184 | 12 | 1 | 345 | 1 | 344 | 2.08e-70 | 224 |
| MS.gene26670.t1 | MTR_4g094918 | 42.345 | 307 | 153 | 10 | 57 | 345 | 41 | 341 | 3.89e-69 | 220 |
| MS.gene26670.t1 | MTR_1g107550 | 41.441 | 333 | 170 | 11 | 31 | 345 | 30 | 355 | 3.47e-68 | 221 |
| MS.gene26670.t1 | MTR_4g079440 | 40.984 | 305 | 166 | 7 | 51 | 346 | 46 | 345 | 1.20e-67 | 216 |
| MS.gene26670.t1 | MTR_4g047610 | 42.395 | 309 | 156 | 13 | 53 | 345 | 40 | 342 | 2.31e-67 | 215 |
| MS.gene26670.t1 | MTR_4g079470 | 41.447 | 304 | 157 | 11 | 57 | 345 | 47 | 344 | 3.53e-67 | 215 |
| MS.gene26670.t1 | MTR_4g079770 | 41.447 | 304 | 157 | 11 | 57 | 345 | 47 | 344 | 3.68e-67 | 215 |
| MS.gene26670.t1 | MTR_5g022560 | 41.100 | 309 | 160 | 11 | 53 | 345 | 41 | 343 | 3.90e-67 | 215 |
| MS.gene26670.t1 | MTR_4g079800 | 41.447 | 304 | 157 | 12 | 57 | 345 | 47 | 344 | 7.46e-66 | 211 |
| MS.gene26670.t1 | MTR_4g080700 | 37.152 | 323 | 183 | 10 | 34 | 345 | 26 | 339 | 9.21e-65 | 209 |
| MS.gene26670.t1 | MTR_3g116080 | 39.739 | 307 | 167 | 9 | 51 | 345 | 47 | 347 | 1.99e-64 | 208 |
| MS.gene26670.t1 | MTR_4g080730 | 38.614 | 303 | 171 | 8 | 53 | 345 | 42 | 339 | 4.05e-64 | 207 |
| MS.gene26670.t1 | MTR_1g018840 | 38.292 | 363 | 186 | 14 | 5 | 345 | 15 | 361 | 3.03e-63 | 208 |
| MS.gene26670.t1 | MTR_1g018840 | 38.398 | 362 | 185 | 14 | 6 | 345 | 16 | 361 | 4.85e-63 | 208 |
| MS.gene26670.t1 | MTR_2g015920 | 33.520 | 358 | 210 | 9 | 6 | 345 | 11 | 358 | 1.29e-62 | 204 |
| MS.gene26670.t1 | MTR_4g107930 | 40.129 | 309 | 163 | 11 | 53 | 345 | 42 | 344 | 1.71e-62 | 203 |
| MS.gene26670.t1 | MTR_4g071060 | 37.741 | 363 | 183 | 12 | 6 | 342 | 8 | 353 | 1.95e-62 | 203 |
| MS.gene26670.t1 | MTR_3g112430 | 39.423 | 312 | 166 | 10 | 51 | 345 | 36 | 341 | 5.68e-62 | 204 |
| MS.gene26670.t1 | MTR_4g104370 | 41.137 | 299 | 152 | 10 | 64 | 345 | 52 | 343 | 1.51e-61 | 201 |
| MS.gene26670.t1 | MTR_2g090890 | 39.803 | 304 | 168 | 8 | 51 | 345 | 39 | 336 | 2.84e-61 | 199 |
| MS.gene26670.t1 | MTR_3g102220 | 40.968 | 310 | 155 | 12 | 57 | 345 | 59 | 361 | 2.85e-61 | 203 |
| MS.gene26670.t1 | MTR_4g080360 | 36.858 | 331 | 177 | 14 | 34 | 345 | 24 | 341 | 9.07e-60 | 196 |
| MS.gene26670.t1 | MTR_1g023210 | 38.323 | 334 | 168 | 12 | 28 | 337 | 33 | 352 | 2.50e-59 | 195 |
| MS.gene26670.t1 | MTR_2g075830 | 39.604 | 303 | 162 | 11 | 57 | 345 | 45 | 340 | 2.32e-57 | 189 |
| MS.gene26670.t1 | MTR_1g094135 | 34.795 | 365 | 203 | 11 | 7 | 347 | 15 | 368 | 1.64e-55 | 186 |
| MS.gene26670.t1 | MTR_2g016270 | 37.134 | 307 | 164 | 9 | 51 | 345 | 51 | 340 | 1.77e-55 | 188 |
| MS.gene26670.t1 | MTR_2g016180 | 36.774 | 310 | 176 | 9 | 51 | 345 | 51 | 355 | 3.73e-54 | 185 |
| MS.gene26670.t1 | MTR_7g078600 | 36.842 | 304 | 177 | 9 | 51 | 346 | 42 | 338 | 6.27e-54 | 181 |
| MS.gene26670.t1 | MTR_2g015850 | 40.132 | 304 | 149 | 15 | 63 | 346 | 74 | 364 | 6.38e-54 | 181 |
| MS.gene26670.t1 | MTR_2g083930 | 36.111 | 324 | 177 | 12 | 45 | 346 | 29 | 344 | 1.74e-53 | 179 |
| MS.gene26670.t1 | MTR_2g015930 | 31.389 | 360 | 213 | 10 | 6 | 345 | 13 | 358 | 9.29e-53 | 178 |
| MS.gene26670.t1 | MTR_7g079230 | 38.361 | 305 | 160 | 12 | 57 | 346 | 45 | 336 | 1.67e-52 | 177 |
| MS.gene26670.t1 | MTR_4g065077 | 32.044 | 362 | 221 | 9 | 1 | 345 | 3 | 356 | 4.52e-49 | 169 |
| MS.gene26670.t1 | MTR_8g086470 | 31.268 | 355 | 217 | 9 | 1 | 345 | 19 | 356 | 2.68e-43 | 153 |
| MS.gene26670.t1 | MTR_2g067900 | 34.743 | 331 | 172 | 14 | 44 | 346 | 13 | 327 | 2.83e-43 | 152 |
| MS.gene26670.t1 | MTR_4g072790 | 32.665 | 349 | 183 | 11 | 4 | 342 | 11 | 317 | 3.71e-43 | 152 |
| MS.gene26670.t1 | MTR_4g073660 | 32.955 | 352 | 182 | 12 | 4 | 342 | 10 | 320 | 5.40e-41 | 146 |
| MS.gene26670.t1 | MTR_4g072340 | 32.386 | 352 | 184 | 11 | 4 | 342 | 11 | 321 | 1.44e-40 | 145 |
| MS.gene26670.t1 | MTR_2g067560 | 33.538 | 325 | 161 | 13 | 51 | 338 | 16 | 322 | 1.04e-39 | 149 |
| MS.gene26670.t1 | MTR_2g064475 | 32.320 | 362 | 170 | 17 | 41 | 346 | 10 | 352 | 1.52e-37 | 138 |
| MS.gene26670.t1 | MTR_1g023810 | 39.091 | 220 | 121 | 7 | 130 | 343 | 49 | 261 | 3.07e-36 | 132 |
| MS.gene26670.t1 | MTR_7g111060 | 33.333 | 270 | 146 | 8 | 96 | 337 | 67 | 330 | 7.30e-34 | 128 |
| MS.gene26670.t1 | MTR_2g066980 | 29.769 | 346 | 166 | 15 | 34 | 347 | 20 | 320 | 4.70e-33 | 125 |
| MS.gene26670.t1 | MTR_7g078630 | 34.074 | 270 | 141 | 8 | 44 | 302 | 699 | 942 | 4.58e-32 | 127 |
| MS.gene26670.t1 | MTR_7g111050 | 33.829 | 269 | 146 | 10 | 96 | 337 | 64 | 327 | 3.86e-31 | 120 |
| MS.gene26670.t1 | MTR_3g029560 | 29.907 | 214 | 116 | 8 | 142 | 346 | 50 | 238 | 3.62e-19 | 85.9 |
| MS.gene26670.t1 | MTR_7g111050 | 31.687 | 243 | 134 | 10 | 96 | 311 | 59 | 296 | 3.84e-19 | 86.7 |
| MS.gene26670.t1 | MTR_7g078580 | 42.157 | 102 | 49 | 5 | 249 | 345 | 5 | 101 | 2.66e-18 | 80.5 |
| MS.gene26670.t1 | MTR_1g025450 | 32.203 | 177 | 94 | 5 | 130 | 303 | 55 | 208 | 3.36e-18 | 85.9 |
| MS.gene26670.t1 | MTR_2g015840 | 40.171 | 117 | 60 | 5 | 235 | 346 | 161 | 272 | 4.96e-16 | 77.4 |
| MS.gene26670.t1 | MTR_2g015840 | 30.488 | 164 | 92 | 6 | 38 | 183 | 20 | 179 | 1.79e-12 | 67.0 |
| MS.gene26670.t1 | MTR_7g079130 | 43.478 | 92 | 42 | 5 | 260 | 345 | 10 | 97 | 1.19e-15 | 72.0 |
| MS.gene26670.t1 | MTR_8g087510 | 35.115 | 131 | 79 | 4 | 172 | 302 | 24 | 148 | 2.97e-15 | 73.2 |
| MS.gene26670.t1 | MTR_7g078310 | 34.932 | 146 | 88 | 4 | 79 | 222 | 106 | 246 | 5.75e-15 | 74.3 |
| MS.gene26670.t1 | MTR_2g016380 | 32.787 | 122 | 74 | 4 | 228 | 344 | 16 | 134 | 1.41e-14 | 72.8 |
| MS.gene26670.t1 | MTR_2g047960 | 46.250 | 80 | 42 | 1 | 139 | 218 | 7 | 85 | 8.90e-14 | 67.0 |
| MS.gene26670.t1 | MTR_3g082370 | 26.389 | 216 | 140 | 8 | 135 | 337 | 5 | 214 | 1.07e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26670.t1 | AT3G45310 | 72.599 | 354 | 88 | 3 | 1 | 347 | 7 | 358 | 0.0 | 549 |
| MS.gene26670.t1 | AT3G45310 | 72.316 | 354 | 88 | 4 | 1 | 347 | 7 | 357 | 0.0 | 542 |
| MS.gene26670.t1 | AT5G60360 | 74.030 | 335 | 80 | 2 | 20 | 347 | 24 | 358 | 0.0 | 533 |
| MS.gene26670.t1 | AT5G60360 | 73.731 | 335 | 80 | 3 | 20 | 347 | 24 | 357 | 0.0 | 526 |
| MS.gene26670.t1 | AT5G60360 | 73.765 | 324 | 78 | 2 | 20 | 336 | 24 | 347 | 0.0 | 511 |
| MS.gene26670.t1 | AT5G43060 | 45.704 | 291 | 139 | 10 | 67 | 345 | 70 | 353 | 3.59e-69 | 224 |
| MS.gene26670.t1 | AT3G48340 | 42.333 | 300 | 149 | 9 | 64 | 345 | 50 | 343 | 3.63e-69 | 221 |
| MS.gene26670.t1 | AT1G47128 | 38.162 | 359 | 191 | 13 | 5 | 345 | 7 | 352 | 1.99e-68 | 222 |
| MS.gene26670.t1 | AT5G50260 | 38.375 | 357 | 182 | 12 | 6 | 345 | 7 | 342 | 6.04e-67 | 215 |
| MS.gene26670.t1 | AT3G54940 | 37.845 | 362 | 187 | 11 | 1 | 337 | 6 | 354 | 4.14e-66 | 213 |
| MS.gene26670.t1 | AT4G11310 | 36.944 | 360 | 190 | 10 | 6 | 345 | 10 | 352 | 1.20e-65 | 212 |
| MS.gene26670.t1 | AT3G19400 | 43.046 | 302 | 148 | 11 | 60 | 344 | 53 | 347 | 1.59e-65 | 211 |
| MS.gene26670.t1 | AT1G06260 | 38.746 | 351 | 183 | 11 | 7 | 345 | 12 | 342 | 1.75e-65 | 211 |
| MS.gene26670.t1 | AT4G36880 | 41.806 | 299 | 148 | 11 | 67 | 345 | 69 | 361 | 2.45e-65 | 211 |
| MS.gene26670.t1 | AT4G35350 | 40.909 | 308 | 163 | 10 | 51 | 345 | 51 | 352 | 1.37e-64 | 209 |
| MS.gene26670.t1 | AT4G23520 | 40.000 | 310 | 164 | 11 | 51 | 345 | 47 | 349 | 5.75e-64 | 207 |
| MS.gene26670.t1 | AT4G11320 | 38.226 | 327 | 169 | 8 | 40 | 345 | 45 | 359 | 1.91e-63 | 206 |
| MS.gene26670.t1 | AT4G11320 | 38.226 | 327 | 169 | 8 | 40 | 345 | 45 | 359 | 1.91e-63 | 206 |
| MS.gene26670.t1 | AT5G45890 | 39.450 | 327 | 167 | 11 | 40 | 346 | 31 | 346 | 2.85e-63 | 205 |
| MS.gene26670.t1 | AT1G20850 | 39.355 | 310 | 166 | 10 | 51 | 345 | 51 | 353 | 8.13e-63 | 204 |
| MS.gene26670.t1 | AT1G09850 | 38.961 | 308 | 169 | 9 | 51 | 345 | 32 | 333 | 1.51e-61 | 203 |
| MS.gene26670.t1 | AT3G19390 | 42.525 | 301 | 151 | 13 | 60 | 345 | 52 | 345 | 5.59e-61 | 202 |
| MS.gene26670.t1 | AT3G48350 | 37.912 | 364 | 179 | 15 | 4 | 345 | 5 | 343 | 2.58e-60 | 198 |
| MS.gene26670.t1 | AT2G21430 | 37.243 | 341 | 182 | 10 | 28 | 342 | 20 | 354 | 1.43e-58 | 193 |
| MS.gene26670.t1 | AT1G29080 | 40.129 | 309 | 157 | 12 | 57 | 345 | 45 | 345 | 2.09e-58 | 192 |
| MS.gene26670.t1 | AT1G29090 | 36.464 | 362 | 181 | 16 | 5 | 345 | 21 | 354 | 1.96e-56 | 187 |
| MS.gene26670.t1 | AT4G39090 | 38.154 | 325 | 169 | 10 | 40 | 342 | 43 | 357 | 2.71e-56 | 187 |
| MS.gene26670.t1 | AT3G43960 | 39.934 | 303 | 161 | 12 | 59 | 345 | 49 | 346 | 7.89e-55 | 184 |
| MS.gene26670.t1 | AT2G34080 | 38.438 | 320 | 164 | 15 | 46 | 345 | 38 | 344 | 9.38e-55 | 183 |
| MS.gene26670.t1 | AT3G49340 | 36.859 | 312 | 170 | 11 | 53 | 345 | 37 | 340 | 4.90e-53 | 178 |
| MS.gene26670.t1 | AT4G16190 | 36.176 | 340 | 184 | 12 | 26 | 342 | 34 | 363 | 7.21e-53 | 179 |
| MS.gene26670.t1 | AT2G27420 | 37.700 | 313 | 165 | 13 | 57 | 345 | 41 | 347 | 8.77e-53 | 178 |
| MS.gene26670.t1 | AT1G29110 | 36.102 | 313 | 161 | 12 | 53 | 345 | 40 | 333 | 2.07e-48 | 166 |
| MS.gene26670.t1 | AT4G35350 | 42.259 | 239 | 126 | 8 | 51 | 280 | 51 | 286 | 1.94e-46 | 159 |
| MS.gene26670.t1 | AT3G54940 | 36.972 | 284 | 153 | 7 | 1 | 268 | 6 | 279 | 1.94e-46 | 159 |
| MS.gene26670.t1 | AT3G19400 | 42.609 | 230 | 116 | 8 | 60 | 276 | 53 | 279 | 5.31e-44 | 153 |
| MS.gene26670.t1 | AT3G48350 | 36.242 | 298 | 152 | 11 | 4 | 284 | 5 | 281 | 8.23e-40 | 142 |
| MS.gene26670.t1 | AT1G02305 | 32.990 | 291 | 156 | 10 | 80 | 337 | 49 | 333 | 4.88e-34 | 129 |
| MS.gene26670.t1 | AT1G02300 | 37.089 | 213 | 102 | 8 | 149 | 337 | 146 | 350 | 4.78e-31 | 121 |
| MS.gene26670.t1 | AT4G01610 | 35.965 | 228 | 118 | 7 | 132 | 337 | 109 | 330 | 1.74e-30 | 119 |
| MS.gene26670.t1 | AT4G01610 | 35.088 | 228 | 120 | 7 | 132 | 337 | 109 | 330 | 2.38e-28 | 113 |
Find 87 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGGATCATGCTGGACATTC+AGG | 0.322819 | 8.4:-9557582 | MS.gene26670:intron |
| CTGCAGCACAACTGGAGCTT+TGG | 0.347290 | 8.4:-9557040 | MS.gene26670:intron |
| TATCCCTACACTGGACAAAA+TGG | 0.356510 | 8.4:-9556856 | MS.gene26670:CDS |
| GCTCAATCCGGCGGCGGCGG+TGG | 0.358129 | 8.4:+9558734 | None:intergenic |
| ACTGTCATCTGCAGCACAAC+TGG | 0.364159 | 8.4:-9557048 | MS.gene26670:intron |
| TGGCTACTTCAAAATGGAAA+TGG | 0.373295 | 8.4:-9556039 | MS.gene26670:CDS |
| TGACCATGGCTACTTCAAAA+TGG | 0.374145 | 8.4:-9556045 | MS.gene26670:CDS |
| GTTATTGTATGCAGAAAGAT+TGG | 0.377542 | 8.4:-9557648 | MS.gene26670:intron |
| AGGTATAGTCAGTGAAGTTA+AGG | 0.383706 | 8.4:-9557617 | MS.gene26670:CDS |
| CATGGAAAAGCAGCTTCTTC+AGG | 0.383850 | 8.4:-9558676 | MS.gene26670:CDS |
| ACCTCAAATGCCACACTAAC+GGG | 0.384523 | 8.4:+9556399 | None:intergenic |
| GCTGTTCTTGCTGTTGGGTA+TGG | 0.386199 | 8.4:-9556125 | MS.gene26670:CDS |
| TGCGTGGCCACCGCCGCCGC+CGG | 0.394631 | 8.4:-9558741 | MS.gene26670:CDS |
| GGCTACTTCAAAATGGAAAT+GGG | 0.395439 | 8.4:-9556038 | MS.gene26670:CDS |
| AAACTCATGGGGAGGTGAAT+GGG | 0.395979 | 8.4:-9556069 | MS.gene26670:CDS |
| TTTAATGTATTCAAAGGCTT+GGG | 0.400464 | 8.4:+9556909 | None:intergenic |
| AATCATGCTGTTCTTGCTGT+TGG | 0.406771 | 8.4:-9556131 | MS.gene26670:CDS |
| AACGTTGCTGTTCAAGTCCT+TGG | 0.409619 | 8.4:-9556811 | MS.gene26670:CDS |
| TTCAATAACTTTGGCTGCAA+TGG | 0.411469 | 8.4:-9556943 | MS.gene26670:CDS |
| ATTTAATGTATTCAAAGGCT+TGG | 0.415754 | 8.4:+9556908 | None:intergenic |
| TTGAAGATGGTGTACCATAT+TGG | 0.416176 | 8.4:-9556100 | MS.gene26670:CDS |
| TCCCGTTAGTGTGGCATTTG+AGG | 0.421683 | 8.4:-9556400 | MS.gene26670:CDS |
| ATCATGCTGTTCTTGCTGTT+GGG | 0.423797 | 8.4:-9556130 | MS.gene26670:CDS |
| TCCACGACTCCAATCCTATT+CGG | 0.426027 | 8.4:-9558710 | MS.gene26670:CDS |
| CGTACCATTTAGGCCACAAC+AGG | 0.448204 | 8.4:+9555719 | None:intergenic |
| AATAACTTTGGCTGCAATGG+TGG | 0.455761 | 8.4:-9556940 | MS.gene26670:CDS |
| CAGAAAGATTGGAGGAAAGA+AGG | 0.463829 | 8.4:-9557637 | MS.gene26670:CDS |
| AAAACTCATGGGGAGGTGAA+TGG | 0.463951 | 8.4:-9556070 | MS.gene26670:CDS |
| CAGCAGCTAGTGGACTGTGC+TGG | 0.465005 | 8.4:-9556970 | MS.gene26670:CDS |
| ATGTCGGAGACCATCCGAAT+AGG | 0.466748 | 8.4:+9558696 | None:intergenic |
| TCAGCTTACGCACAGGCCTT+CGG | 0.468118 | 8.4:-9557015 | MS.gene26670:CDS |
| GCTGGTGCTTTCAATAACTT+TGG | 0.475033 | 8.4:-9556952 | MS.gene26670:CDS |
| GAAGCTCAATCCGGCGGCGG+CGG | 0.484936 | 8.4:+9558731 | None:intergenic |
| AATTGTTCTGCTACTCTCAA+GGG | 0.485400 | 8.4:-9558339 | MS.gene26670:CDS |
| GTCAGTGAAGTTAAGGATCA+AGG | 0.494471 | 8.4:-9557610 | MS.gene26670:CDS |
| TCTTTCTGAGCAGCAGCTAG+TGG | 0.496747 | 8.4:-9556980 | MS.gene26670:CDS |
| ATTGTATTTAATGTATTCAA+AGG | 0.503015 | 8.4:+9556903 | None:intergenic |
| TTGTTCATCCTATCCTGTTG+TGG | 0.503980 | 8.4:-9555732 | MS.gene26670:CDS |
| GCTCGCTTTGCTAACAGATA+CGG | 0.506701 | 8.4:-9558621 | MS.gene26670:CDS |
| TCTACTAATAAGAAACGTCT+TGG | 0.509184 | 8.4:-9558525 | MS.gene26670:CDS |
| AAGGCCACTGCGGATCATGC+TGG | 0.516867 | 8.4:-9557591 | MS.gene26670:CDS |
| CACCTCAAATGCCACACTAA+CGG | 0.517450 | 8.4:+9556398 | None:intergenic |
| GGAGACCATCCGAATAGGAT+TGG | 0.519715 | 8.4:+9558701 | None:intergenic |
| GACTTCAGATTATACAAGAA+AGG | 0.522674 | 8.4:-9556369 | MS.gene26670:CDS |
| GAACAACATCGGTAATCCTA+TGG | 0.528082 | 8.4:+9558313 | None:intergenic |
| TGTTGCTGACATACCTCGGC+AGG | 0.528653 | 8.4:+9558288 | None:intergenic |
| AAATTGTTCTGCTACTCTCA+AGG | 0.532831 | 8.4:-9558340 | MS.gene26670:CDS |
| GGAGTCGTGGAAGCTCAATC+CGG | 0.546963 | 8.4:+9558722 | None:intergenic |
| CTACTCTCAAGGGGAACCAT+AGG | 0.552146 | 8.4:-9558329 | MS.gene26670:CDS |
| TATTCGGATGGTCTCCGACA+TGG | 0.552839 | 8.4:-9558694 | MS.gene26670:CDS |
| AAACGTCTTGGTTACACTCT+CGG | 0.554881 | 8.4:-9558513 | MS.gene26670:intron |
| CGATGTTGTTCTTCCTGCCG+AGG | 0.557356 | 8.4:-9558301 | MS.gene26670:intron |
| ATAACTTTGGCTGCAATGGT+GGG | 0.558078 | 8.4:-9556939 | MS.gene26670:CDS |
| CATTTAGGCCACAACAGGAT+AGG | 0.558859 | 8.4:+9555724 | None:intergenic |
| GTGGAAGCTCAATCCGGCGG+CGG | 0.560054 | 8.4:+9558728 | None:intergenic |
| TCCGAATAGGATTGGAGTCG+TGG | 0.561061 | 8.4:+9558709 | None:intergenic |
| AACTCATGGGGAGGTGAATG+GGG | 0.564340 | 8.4:-9556068 | MS.gene26670:CDS |
| ATTGTATGCAGAAAGATTGG+AGG | 0.565149 | 8.4:-9557645 | MS.gene26670:intron |
| AAGCAGCTTCTTCAGGTCAT+CGG | 0.576623 | 8.4:-9558669 | MS.gene26670:CDS |
| ATGTATTCAAAGGCTTGGGA+TGG | 0.579188 | 8.4:+9556913 | None:intergenic |
| TCTACGCTTCATTTCATCAA+CGG | 0.582909 | 8.4:+9558584 | None:intergenic |
| AAGAGAGATATTCTTTCCGA+AGG | 0.583318 | 8.4:+9556999 | None:intergenic |
| CGTTAGTGTGGCATTTGAGG+TGG | 0.585108 | 8.4:-9556397 | MS.gene26670:CDS |
| CCACGCAGAAGAAAACGATA+AGG | 0.585441 | 8.4:+9558757 | None:intergenic |
| CAATGGTGGCCTTGAGACAG+AGG | 0.588490 | 8.4:-9556884 | MS.gene26670:CDS |
| TTTGAATACATTAAATACAA+TGG | 0.591214 | 8.4:-9556901 | MS.gene26670:CDS |
| TTTGGAGTCAGCTTACGCAC+AGG | 0.591422 | 8.4:-9557022 | MS.gene26670:CDS |
| GATATGCTTCCTCTGTCTCA+AGG | 0.591795 | 8.4:+9556875 | None:intergenic |
| GTTGGGTATGGAATTGAAGA+TGG | 0.599047 | 8.4:-9556113 | MS.gene26670:CDS |
| GAATACATTAAATACAATGG+TGG | 0.602840 | 8.4:-9556898 | MS.gene26670:CDS |
| GAGGAAGCATATCCCTACAC+TGG | 0.603850 | 8.4:-9556865 | MS.gene26670:CDS |
| AACTTGTGGCAACACACCCA+TGG | 0.613991 | 8.4:-9556331 | MS.gene26670:intron |
| GGAGGTGAATGGGGTGACCA+TGG | 0.614058 | 8.4:-9556059 | MS.gene26670:CDS |
| CGACTCCAATCCTATTCGGA+TGG | 0.614891 | 8.4:-9558706 | MS.gene26670:CDS |
| ATTGTTCTGCTACTCTCAAG+GGG | 0.626423 | 8.4:-9558338 | MS.gene26670:CDS |
| TGGCTCTGTCAATATCACCT+TGG | 0.626940 | 8.4:-9556791 | MS.gene26670:intron |
| GCTACTTCAAAATGGAAATG+GGG | 0.626994 | 8.4:-9556037 | MS.gene26670:CDS |
| GTCGTGGAAGCTCAATCCGG+CGG | 0.638778 | 8.4:+9558725 | None:intergenic |
| GTTTACACTAGTACAACTTG+TGG | 0.641036 | 8.4:-9556345 | MS.gene26670:CDS |
| GAGTTCAGAAGTCATAGACT+TGG | 0.649401 | 8.4:-9558372 | MS.gene26670:CDS |
| AGCGAGCGAAAGAGACAGCG+TGG | 0.659831 | 8.4:+9558637 | None:intergenic |
| AGGTGATATTGACAGAGCCA+AGG | 0.667399 | 8.4:+9556794 | None:intergenic |
| CTCGGCAGGAAGAACAACAT+CGG | 0.700091 | 8.4:+9558302 | None:intergenic |
| ATGTCCAGCATGATCCGCAG+TGG | 0.707970 | 8.4:+9557587 | None:intergenic |
| GAAATGGGGAAGAATATGTG+CGG | 0.730027 | 8.4:-9556023 | MS.gene26670:intron |
| GTTAAGGATCAAGGCCACTG+CGG | 0.773436 | 8.4:-9557601 | MS.gene26670:CDS |
| GAGAGTGAAAGATGGCACAG+TGG | 0.782503 | 8.4:-9558785 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTAACAAATAGTTT+AGG | - | chr8.4:9558273-9558292 | MS.gene26670:intron | 10.0% |
| !!! | TTTGTTTTTAATTTTGTTTT+GGG | - | chr8.4:9558032-9558051 | MS.gene26670:intron | 10.0% |
| !!! | TTTTGTTTTTAATTTTGTTT+TGG | - | chr8.4:9558031-9558050 | MS.gene26670:intron | 10.0% |
| !! | AAAAAGAAAATTAAAGTCAA+AGG | + | chr8.4:9556041-9556060 | None:intergenic | 15.0% |
| !! | ATTGTATTTAATGTATTCAA+AGG | + | chr8.4:9557601-9557620 | None:intergenic | 15.0% |
| !! | TTTGAATACATTAAATACAA+TGG | - | chr8.4:9557600-9557619 | MS.gene26670:CDS | 15.0% |
| !!! | AAATTTTAAAGTATGAGTTT+TGG | - | chr8.4:9556994-9557013 | MS.gene26670:CDS | 15.0% |
| !!! | AATCATTTTTGTTTAATTTC+AGG | - | chr8.4:9558737-9558756 | MS.gene26670:CDS | 15.0% |
| !!! | ATTTTGATGATAAATGATTT+TGG | - | chr8.4:9556075-9556094 | MS.gene26670:CDS | 15.0% |
| !! | ATAGCTTATAGTAGTTTATA+TGG | - | chr8.4:9556492-9556511 | MS.gene26670:intron | 20.0% |
| !! | CTGAGTTTATATTATTTAGT+TGG | - | chr8.4:9557837-9557856 | MS.gene26670:intron | 20.0% |
| !! | CTTTCATTCCATAAAATTAT+TGG | + | chr8.4:9557211-9557230 | None:intergenic | 20.0% |
| !! | TACAAATAAATTAGGACTTA+GGG | + | chr8.4:9557338-9557357 | None:intergenic | 20.0% |
| !! | TTAAATTGTTTATTCAAACG+AGG | - | chr8.4:9556575-9556594 | MS.gene26670:intron | 20.0% |
| !! | TTACAAATAAATTAGGACTT+AGG | + | chr8.4:9557339-9557358 | None:intergenic | 20.0% |
| !! | TTCCATTCCATTAAAATTAT+TGG | + | chr8.4:9557255-9557274 | None:intergenic | 20.0% |
| !!! | AAACTGTCCAATAATTTTAA+TGG | - | chr8.4:9557245-9557264 | MS.gene26670:intron | 20.0% |
| !!! | TAAACTGTCCAATAATTTTA+TGG | - | chr8.4:9557200-9557219 | MS.gene26670:intron | 20.0% |
| !!! | TAAGTTATTTCTATAACTGA+AGG | + | chr8.4:9556539-9556558 | None:intergenic | 20.0% |
| !!! | TACTATAAGCTATTTTCATA+AGG | + | chr8.4:9556485-9556504 | None:intergenic | 20.0% |
| !!! | TGTTATTCCATTTTCTTATT+GGG | - | chr8.4:9556662-9556681 | MS.gene26670:intron | 20.0% |
| ! | AATAAGTAAATTGCATTCTG+AGG | - | chr8.4:9556803-9556822 | MS.gene26670:CDS | 25.0% |
| ! | AATCAAACATATGATTACCA+AGG | + | chr8.4:9557730-9557749 | None:intergenic | 25.0% |
| ! | ACAAATAAATTAGGACTTAG+GGG | + | chr8.4:9557337-9557356 | None:intergenic | 25.0% |
| ! | ACTATGTTAATTTCTTGTGT+TGG | - | chr8.4:9557803-9557822 | MS.gene26670:intron | 25.0% |
| ! | ATTCAAATTTCGTTAACTTC+TGG | + | chr8.4:9558333-9558352 | None:intergenic | 25.0% |
| ! | ATTTAATGTATTCAAAGGCT+TGG | + | chr8.4:9557596-9557615 | None:intergenic | 25.0% |
| ! | CAAAAATGATTAGCAAAAAC+AGG | + | chr8.4:9558728-9558747 | None:intergenic | 25.0% |
| ! | CAATAAGAAAATGGAATAAC+AGG | + | chr8.4:9556663-9556682 | None:intergenic | 25.0% |
| ! | CACTTGGTTACAAATAAATT+AGG | + | chr8.4:9557346-9557365 | None:intergenic | 25.0% |
| ! | GAAATTAATGCTAACATACA+CGG | + | chr8.4:9556696-9556715 | None:intergenic | 25.0% |
| ! | GAATACATTAAATACAATGG+TGG | - | chr8.4:9557603-9557622 | MS.gene26670:CDS | 25.0% |
| ! | TAACGAAATTTGAATTTGTC+TGG | - | chr8.4:9558338-9558357 | MS.gene26670:CDS | 25.0% |
| ! | TAGTTAACAAATACATCATG+CGG | + | chr8.4:9557762-9557781 | None:intergenic | 25.0% |
| ! | TCACAAACAAATATGAACAA+CGG | + | chr8.4:9556783-9556802 | None:intergenic | 25.0% |
| ! | TGACAGTCTAATATTAATTG+TGG | + | chr8.4:9556753-9556772 | None:intergenic | 25.0% |
| ! | TTAACAAAAGAGTTAAGATC+CGG | + | chr8.4:9558512-9558531 | None:intergenic | 25.0% |
| ! | TTCAAATTTCGTTAACTTCT+GGG | + | chr8.4:9558332-9558351 | None:intergenic | 25.0% |
| ! | TTGAATTAAACACTAGATTG+AGG | + | chr8.4:9558226-9558245 | None:intergenic | 25.0% |
| ! | TTTAATGTATTCAAAGGCTT+GGG | + | chr8.4:9557595-9557614 | None:intergenic | 25.0% |
| ! | TTTCTGCATACAATAACAAA+AGG | + | chr8.4:9556850-9556869 | None:intergenic | 25.0% |
| !! | CTGTTATTCCATTTTCTTAT+TGG | - | chr8.4:9556661-9556680 | MS.gene26670:intron | 25.0% |
| !! | TAATCATTTAATCTGAAGTG+CGG | + | chr8.4:9556613-9556632 | None:intergenic | 25.0% |
| !! | TCTTGATGATTAAATAACTG+TGG | - | chr8.4:9558567-9558586 | MS.gene26670:CDS | 25.0% |
| !! | TTTTCAGATGTAAATTTGCA+GGG | + | chr8.4:9557672-9557691 | None:intergenic | 25.0% |
| !!! | AATAGTTTAGGTTGAATCTA+TGG | - | chr8.4:9558285-9558304 | MS.gene26670:intron | 25.0% |
| !!! | GTCCAATAATTTTAATGGAA+TGG | - | chr8.4:9557250-9557269 | MS.gene26670:intron | 25.0% |
| !!! | TTAATTTTGTTTTGGGTGTA+GGG | - | chr8.4:9558039-9558058 | MS.gene26670:intron | 25.0% |
| !!! | TTTAATTTTGTTTTGGGTGT+AGG | - | chr8.4:9558038-9558057 | MS.gene26670:intron | 25.0% |
| AAAGTGCAACTTCATACAAA+GGG | + | chr8.4:9557413-9557432 | None:intergenic | 30.0% | |
| AAATTCAGTTGAAGAATGAC+AGG | + | chr8.4:9556718-9556737 | None:intergenic | 30.0% | |
| AACTATAGCATAGACACTTA+TGG | + | chr8.4:9556385-9556404 | None:intergenic | 30.0% | |
| AATTAAACACTAGATTGAGG+AGG | + | chr8.4:9558223-9558242 | None:intergenic | 30.0% | |
| ATCTAATATAGATGAAGTCG+AGG | + | chr8.4:9558004-9558023 | None:intergenic | 30.0% | |
| GACTTCAGATTATACAAGAA+AGG | - | chr8.4:9558132-9558151 | MS.gene26670:intron | 30.0% | |
| GTTATTGTATGCAGAAAGAT+TGG | - | chr8.4:9556853-9556872 | MS.gene26670:CDS | 30.0% | |
| TAAAGTGCAACTTCATACAA+AGG | + | chr8.4:9557414-9557433 | None:intergenic | 30.0% | |
| TAACAAAAGAGTTAAGATCC+GGG | + | chr8.4:9558511-9558530 | None:intergenic | 30.0% | |
| TAAGTAGTAATCAAGTGTGT+TGG | - | chr8.4:9556323-9556342 | MS.gene26670:intron | 30.0% | |
| TCAAATTTCGTTAACTTCTG+GGG | + | chr8.4:9558331-9558350 | None:intergenic | 30.0% | |
| TCCTACATAACACAATCTAA+AGG | + | chr8.4:9558599-9558618 | None:intergenic | 30.0% | |
| TCTACTAATAAGAAACGTCT+TGG | - | chr8.4:9555976-9555995 | MS.gene26670:intron | 30.0% | |
| TGATTAAATAACTGTGGCAA+AGG | - | chr8.4:9558573-9558592 | MS.gene26670:CDS | 30.0% | |
| TGATTGCTCAAAGAAAAAGT+TGG | + | chr8.4:9557065-9557084 | None:intergenic | 30.0% | |
| TTGGCTCATTAAAAACTCAT+GGG | - | chr8.4:9558420-9558439 | MS.gene26670:intron | 30.0% | |
| TTTGCGTCTTTGTGAAAATA+TGG | - | chr8.4:9558642-9558661 | MS.gene26670:CDS | 30.0% | |
| ! | AAAGTTGGCTTATAAACCAA+AGG | + | chr8.4:9557050-9557069 | None:intergenic | 30.0% |
| ! | AAGGCATTAATTTGAGAAAG+TGG | + | chr8.4:9557380-9557399 | None:intergenic | 30.0% |
| ! | ATATTTTCACAAAGACGCAA+AGG | + | chr8.4:9558643-9558662 | None:intergenic | 30.0% |
| ! | ATTGGCTCATTAAAAACTCA+TGG | - | chr8.4:9558419-9558438 | MS.gene26670:intron | 30.0% |
| ! | GAGTTTTTAATGAGCCAATA+TGG | + | chr8.4:9558418-9558437 | None:intergenic | 30.0% |
| ! | GTTTTCAGATGTAAATTTGC+AGG | + | chr8.4:9557673-9557692 | None:intergenic | 30.0% |
| AAATTGTTCTGCTACTCTCA+AGG | - | chr8.4:9556161-9556180 | MS.gene26670:intron | 35.0% | |
| AAGAGAGATATTCTTTCCGA+AGG | + | chr8.4:9557505-9557524 | None:intergenic | 35.0% | |
| AATTGTTCTGCTACTCTCAA+GGG | - | chr8.4:9556162-9556181 | MS.gene26670:intron | 35.0% | |
| AGGTATAGTCAGTGAAGTTA+AGG | - | chr8.4:9556884-9556903 | MS.gene26670:CDS | 35.0% | |
| ATCAAGATCCAAGACAGAAA+AGG | + | chr8.4:9558554-9558573 | None:intergenic | 35.0% | |
| ATTCACATTATGTGCTCGTA+TGG | - | chr8.4:9557918-9557937 | MS.gene26670:intron | 35.0% | |
| ATTGTATGCAGAAAGATTGG+AGG | - | chr8.4:9556856-9556875 | MS.gene26670:CDS | 35.0% | |
| CAAGACAGAAAAGGACAATT+GGG | + | chr8.4:9558545-9558564 | None:intergenic | 35.0% | |
| GAAATTTGAATTTGTCTGGC+AGG | - | chr8.4:9558342-9558361 | MS.gene26670:CDS | 35.0% | |
| GCCTTTAGATTGTGTTATGT+AGG | - | chr8.4:9558595-9558614 | MS.gene26670:CDS | 35.0% | |
| GCTACTTCAAAATGGAAATG+GGG | - | chr8.4:9558464-9558483 | MS.gene26670:intron | 35.0% | |
| GGCTACTTCAAAATGGAAAT+GGG | - | chr8.4:9558463-9558482 | MS.gene26670:intron | 35.0% | |
| GGCTTATAAACCAAAGGATA+GGG | + | chr8.4:9557044-9557063 | None:intergenic | 35.0% | |
| GTTTACACTAGTACAACTTG+TGG | - | chr8.4:9558156-9558175 | MS.gene26670:intron | 35.0% | |
| TACAAAGGGTTGAATCTCAA+AGG | + | chr8.4:9557399-9557418 | None:intergenic | 35.0% | |
| TATAGCATAGACACTTATGG+TGG | + | chr8.4:9556382-9556401 | None:intergenic | 35.0% | |
| TCTACGCTTCATTTCATCAA+CGG | + | chr8.4:9555920-9555939 | None:intergenic | 35.0% | |
| TGGCTACTTCAAAATGGAAA+TGG | - | chr8.4:9558462-9558481 | MS.gene26670:intron | 35.0% | |
| TGGCTCATTAAAAACTCATG+GGG | - | chr8.4:9558421-9558440 | MS.gene26670:intron | 35.0% | |
| TGGCTTATAAACCAAAGGAT+AGG | + | chr8.4:9557045-9557064 | None:intergenic | 35.0% | |
| TGTCGTATTATGAGCTAGTT+TGG | - | chr8.4:9556264-9556283 | MS.gene26670:intron | 35.0% | |
| TTCAATAACTTTGGCTGCAA+TGG | - | chr8.4:9557558-9557577 | MS.gene26670:intron | 35.0% | |
| TTGAAGATGGTGTACCATAT+TGG | - | chr8.4:9558401-9558420 | MS.gene26670:intron | 35.0% | |
| ! | AGTGGTGAAATTTTTGCACT+TGG | + | chr8.4:9557362-9557381 | None:intergenic | 35.0% |
| ! | CAGTGTCATTGTTACAGATA+TGG | + | chr8.4:9557437-9557456 | None:intergenic | 35.0% |
| ! | GAGAGTTTTTGCAAGAACTT+AGG | - | chr8.4:9556408-9556427 | MS.gene26670:CDS | 35.0% |
| ! | TTCCATTTTCTTATTGGGTC+TGG | - | chr8.4:9556667-9556686 | MS.gene26670:intron | 35.0% |
| !! | AATGAGCATTGTGCTCTTTT+TGG | + | chr8.4:9557875-9557894 | None:intergenic | 35.0% |
| !! | AGATTTTGCTGATTGGACTT+GGG | - | chr8.4:9556104-9556123 | MS.gene26670:CDS | 35.0% |
| !!! | ACTTAAGTGTTGTTTTCGTC+AGG | + | chr8.4:9556308-9556327 | None:intergenic | 35.0% |
| !!! | TTTCCATTTTGAAGTAGCCA+TGG | + | chr8.4:9558462-9558481 | None:intergenic | 35.0% |
| AAACGTCTTGGTTACACTCT+CGG | - | chr8.4:9555988-9556007 | MS.gene26670:intron | 40.0% | |
| AATAACTTTGGCTGCAATGG+TGG | - | chr8.4:9557561-9557580 | MS.gene26670:intron | 40.0% | |
| AGGGTTTCAAGAGGTTAAGA+TGG | + | chr8.4:9557025-9557044 | None:intergenic | 40.0% | |
| ATAACTTTGGCTGCAATGGT+GGG | - | chr8.4:9557562-9557581 | MS.gene26670:intron | 40.0% | |
| ATGTATTCAAAGGCTTGGGA+TGG | + | chr8.4:9557591-9557610 | None:intergenic | 40.0% | |
| ATTGTTCTGCTACTCTCAAG+GGG | - | chr8.4:9556163-9556182 | MS.gene26670:intron | 40.0% | |
| CACCAGACCCAATAAGAAAA+TGG | + | chr8.4:9556672-9556691 | None:intergenic | 40.0% | |
| CAGAAAGATTGGAGGAAAGA+AGG | - | chr8.4:9556864-9556883 | MS.gene26670:CDS | 40.0% | |
| CCAAGACAGAAAAGGACAAT+TGG | + | chr8.4:9558546-9558565 | None:intergenic | 40.0% | |
| CTCATTAAAAACTCATGGGG+AGG | - | chr8.4:9558424-9558443 | MS.gene26670:intron | 40.0% | |
| GAAATGGGGAAGAATATGTG+CGG | - | chr8.4:9558478-9558497 | MS.gene26670:intron | 40.0% | |
| GAACAACATCGGTAATCCTA+TGG | + | chr8.4:9556191-9556210 | None:intergenic | 40.0% | |
| GAGTTCAGAAGTCATAGACT+TGG | - | chr8.4:9556129-9556148 | MS.gene26670:CDS | 40.0% | |
| GCTGGTGCTTTCAATAACTT+TGG | - | chr8.4:9557549-9557568 | MS.gene26670:intron | 40.0% | |
| GTCAGTGAAGTTAAGGATCA+AGG | - | chr8.4:9556891-9556910 | MS.gene26670:CDS | 40.0% | |
| GTTGGGTATGGAATTGAAGA+TGG | - | chr8.4:9558388-9558407 | MS.gene26670:CDS | 40.0% | |
| TATCCCTACACTGGACAAAA+TGG | - | chr8.4:9557645-9557664 | MS.gene26670:intron | 40.0% | |
| TATTGCAGAACACTCACCAT+GGG | + | chr8.4:9558189-9558208 | None:intergenic | 40.0% | |
| TGACCATGGCTACTTCAAAA+TGG | - | chr8.4:9558456-9558475 | MS.gene26670:intron | 40.0% | |
| TTGTTCATCCTATCCTGTTG+TGG | - | chr8.4:9558769-9558788 | MS.gene26670:CDS | 40.0% | |
| ! | AACTAACAACAGCTCTAGCA+AGG | + | chr8.4:9558668-9558687 | None:intergenic | 40.0% |
| ! | AATCATGCTGTTCTTGCTGT+TGG | - | chr8.4:9558370-9558389 | MS.gene26670:CDS | 40.0% |
| ! | CCAATTGTCCTTTTCTGTCT+TGG | - | chr8.4:9558543-9558562 | MS.gene26670:CDS | 40.0% |
| ! | GAGTTGCAGATTTTGCTGAT+TGG | - | chr8.4:9556097-9556116 | MS.gene26670:CDS | 40.0% |
| !! | ATCATGCTGTTCTTGCTGTT+GGG | - | chr8.4:9558371-9558390 | MS.gene26670:CDS | 40.0% |
| !! | CAGATTTTGCTGATTGGACT+TGG | - | chr8.4:9556103-9556122 | MS.gene26670:CDS | 40.0% |
| !!! | AAGAAGCTGCTTTTCCATGT+CGG | + | chr8.4:9555824-9555843 | None:intergenic | 40.0% |
| AAAACTCATGGGGAGGTGAA+TGG | - | chr8.4:9558431-9558450 | MS.gene26670:intron | 45.0% | |
| AAACTCATGGGGAGGTGAAT+GGG | - | chr8.4:9558432-9558451 | MS.gene26670:intron | 45.0% | |
| AAGCAGCTTCTTCAGGTCAT+CGG | - | chr8.4:9555832-9555851 | MS.gene26670:intron | 45.0% | |
| AATATGTGCGGTAAGGATCC+CGG | - | chr8.4:9558490-9558509 | MS.gene26670:intron | 45.0% | |
| ACCTCAAATGCCACACTAAC+GGG | + | chr8.4:9558105-9558124 | None:intergenic | 45.0% | |
| AGGTGATATTGACAGAGCCA+AGG | + | chr8.4:9557710-9557729 | None:intergenic | 45.0% | |
| CACCTCAAATGCCACACTAA+CGG | + | chr8.4:9558106-9558125 | None:intergenic | 45.0% | |
| CAGAAAAGGACAATTGGGTG+AGG | + | chr8.4:9558540-9558559 | None:intergenic | 45.0% | |
| CAGTTGTTGCTGACATACCT+CGG | + | chr8.4:9556220-9556239 | None:intergenic | 45.0% | |
| CATGGAAAAGCAGCTTCTTC+AGG | - | chr8.4:9555825-9555844 | MS.gene26670:intron | 45.0% | |
| CCAAAGGATAGGGTTTCAAG+AGG | + | chr8.4:9557034-9557053 | None:intergenic | 45.0% | |
| CCACGCAGAAGAAAACGATA+AGG | + | chr8.4:9555747-9555766 | None:intergenic | 45.0% | |
| CCTCTTGAAACCCTATCCTT+TGG | - | chr8.4:9557031-9557050 | MS.gene26670:CDS | 45.0% | |
| CTATTGCAGAACACTCACCA+TGG | + | chr8.4:9558190-9558209 | None:intergenic | 45.0% | |
| GATATGCTTCCTCTGTCTCA+AGG | + | chr8.4:9557629-9557648 | None:intergenic | 45.0% | |
| GCTCGCTTTGCTAACAGATA+CGG | - | chr8.4:9555880-9555899 | MS.gene26670:intron | 45.0% | |
| GTAGTTGCTCTGTAGAGACA+TGG | - | chr8.4:9557959-9557978 | MS.gene26670:intron | 45.0% | |
| GTCTCTACAGAGCAACTACA+AGG | + | chr8.4:9557958-9557977 | None:intergenic | 45.0% | |
| TCCACGACTCCAATCCTATT+CGG | - | chr8.4:9555791-9555810 | MS.gene26670:intron | 45.0% | |
| ! | AACGTTGCTGTTCAAGTCCT+TGG | - | chr8.4:9557690-9557709 | MS.gene26670:intron | 45.0% |
| ! | CCTTATCGTTTTCTTCTGCG+TGG | - | chr8.4:9555744-9555763 | MS.gene26670:CDS | 45.0% |
| ! | CTGAAGTGCGGATGCTATTT+AGG | + | chr8.4:9556601-9556620 | None:intergenic | 45.0% |
| ! | CTGACTGTGAGGAGCTATTT+TGG | - | chr8.4:9556949-9556968 | MS.gene26670:CDS | 45.0% |
| ! | GCATAGACACTTATGGTGGA+AGG | + | chr8.4:9556378-9556397 | None:intergenic | 45.0% |
| ! | GGACCATTTTGTCCAGTGTA+GGG | + | chr8.4:9557651-9557670 | None:intergenic | 45.0% |
| ! | TCTGGGGAAGCATATCATGA+TGG | + | chr8.4:9558315-9558334 | None:intergenic | 45.0% |
| ! | TCTGGTGTCTAAAACCGAGA+TGG | + | chr8.4:9556351-9556370 | None:intergenic | 45.0% |
| ! | TGGCTCTGTCAATATCACCT+TGG | - | chr8.4:9557710-9557729 | MS.gene26670:intron | 45.0% |
| !! | TTTTGCTGATTGGACTTGGG+AGG | - | chr8.4:9556107-9556126 | MS.gene26670:CDS | 45.0% |
| AACTCATGGGGAGGTGAATG+GGG | - | chr8.4:9558433-9558452 | MS.gene26670:intron | 50.0% | |
| AACTTGTGGCAACACACCCA+TGG | - | chr8.4:9558170-9558189 | MS.gene26670:intron | 50.0% | |
| ACTGTCATCTGCAGCACAAC+TGG | - | chr8.4:9557453-9557472 | MS.gene26670:intron | 50.0% | |
| ATGTCGGAGACCATCCGAAT+AGG | + | chr8.4:9555808-9555827 | None:intergenic | 50.0% | |
| CGACTCCAATCCTATTCGGA+TGG | - | chr8.4:9555795-9555814 | MS.gene26670:intron | 50.0% | |
| CGTTAGTGTGGCATTTGAGG+TGG | - | chr8.4:9558104-9558123 | MS.gene26670:intron | 50.0% | |
| CTACTCTCAAGGGGAACCAT+AGG | - | chr8.4:9556172-9556191 | MS.gene26670:intron | 50.0% | |
| CTCGGCAGGAAGAACAACAT+CGG | + | chr8.4:9556202-9556221 | None:intergenic | 50.0% | |
| GGAGACCATCCGAATAGGAT+TGG | + | chr8.4:9555803-9555822 | None:intergenic | 50.0% | |
| GGGGAAGAATATGTGCGGTA+AGG | - | chr8.4:9558483-9558502 | MS.gene26670:intron | 50.0% | |
| GTTAAGGATCAAGGCCACTG+CGG | - | chr8.4:9556900-9556919 | MS.gene26670:CDS | 50.0% | |
| TATTCGGATGGTCTCCGACA+TGG | - | chr8.4:9555807-9555826 | MS.gene26670:intron | 50.0% | |
| TCCCGTTAGTGTGGCATTTG+AGG | - | chr8.4:9558101-9558120 | MS.gene26670:intron | 50.0% | |
| TCCGAATAGGATTGGAGTCG+TGG | + | chr8.4:9555795-9555814 | None:intergenic | 50.0% | |
| TCTTTCTGAGCAGCAGCTAG+TGG | - | chr8.4:9557521-9557540 | MS.gene26670:intron | 50.0% | |
| ! | CAGGTTGCTTTCTGACTGTG+AGG | - | chr8.4:9556938-9556957 | MS.gene26670:CDS | 50.0% |
| ! | CTTATGGTGGAAGGTGTGTC+TGG | + | chr8.4:9556369-9556388 | None:intergenic | 50.0% |
| ! | GAGGAAGCATATCCCTACAC+TGG | - | chr8.4:9557636-9557655 | MS.gene26670:CDS | 50.0% |
| ! | GGGACCATTTTGTCCAGTGT+AGG | + | chr8.4:9557652-9557671 | None:intergenic | 50.0% |
| ! | TTTGGAGTCAGCTTACGCAC+AGG | - | chr8.4:9557479-9557498 | MS.gene26670:intron | 50.0% |
| ! | TTTTGCTCGTCCCGTTAGTG+TGG | - | chr8.4:9558092-9558111 | MS.gene26670:intron | 50.0% |
| !! | CAAGTGTGTTGGTGCCATCT+CGG | - | chr8.4:9556334-9556353 | MS.gene26670:CDS | 50.0% |
| !! | GCTGTTCTTGCTGTTGGGTA+TGG | - | chr8.4:9558376-9558395 | MS.gene26670:CDS | 50.0% |
| ATGTCCAGCATGATCCGCAG+TGG | + | chr8.4:9556917-9556936 | None:intergenic | 55.0% | |
| CGATGTTGTTCTTCCTGCCG+AGG | - | chr8.4:9556200-9556219 | MS.gene26670:intron | 55.0% | |
| CTGCAGCACAACTGGAGCTT+TGG | - | chr8.4:9557461-9557480 | MS.gene26670:intron | 55.0% | |
| GCGGATCATGCTGGACATTC+AGG | - | chr8.4:9556919-9556938 | MS.gene26670:CDS | 55.0% | |
| GGAGTCGTGGAAGCTCAATC+CGG | + | chr8.4:9555782-9555801 | None:intergenic | 55.0% | |
| TCAGCTTACGCACAGGCCTT+CGG | - | chr8.4:9557486-9557505 | MS.gene26670:intron | 55.0% | |
| TGTTGCTGACATACCTCGGC+AGG | + | chr8.4:9556216-9556235 | None:intergenic | 55.0% | |
| ! | CAATGGTGGCCTTGAGACAG+AGG | - | chr8.4:9557617-9557636 | MS.gene26670:CDS | 55.0% |
| !!! | GTTTTGGGTGTAGGGTGCTG+AGG | - | chr8.4:9558047-9558066 | MS.gene26670:intron | 55.0% |
| AAGGCCACTGCGGATCATGC+TGG | - | chr8.4:9556910-9556929 | MS.gene26670:CDS | 60.0% | |
| AGCGAGCGAAAGAGACAGCG+TGG | + | chr8.4:9555867-9555886 | None:intergenic | 60.0% | |
| GGAGGTGAATGGGGTGACCA+TGG | - | chr8.4:9558442-9558461 | MS.gene26670:intron | 60.0% | |
| GTCGTGGAAGCTCAATCCGG+CGG | + | chr8.4:9555779-9555798 | None:intergenic | 60.0% | |
| !! | CAGCAGCTAGTGGACTGTGC+TGG | - | chr8.4:9557531-9557550 | MS.gene26670:intron | 60.0% |
| GTGGAAGCTCAATCCGGCGG+CGG | + | chr8.4:9555776-9555795 | None:intergenic | 65.0% | |
| GAAGCTCAATCCGGCGGCGG+CGG | + | chr8.4:9555773-9555792 | None:intergenic | 70.0% | |
| ! | GCTCAATCCGGCGGCGGCGG+TGG | + | chr8.4:9555770-9555789 | None:intergenic | 80.0% |
| ! | TGCGTGGCCACCGCCGCCGC+CGG | - | chr8.4:9555760-9555779 | MS.gene26670:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 9555727 | 9558796 | 9555727 | ID=MS.gene26670 |
| chr8.4 | mRNA | 9555727 | 9558796 | 9555727 | ID=MS.gene26670.t1;Parent=MS.gene26670 |
| chr8.4 | exon | 9558514 | 9558796 | 9558514 | ID=MS.gene26670.t1.exon1;Parent=MS.gene26670.t1 |
| chr8.4 | CDS | 9558514 | 9558796 | 9558514 | ID=cds.MS.gene26670.t1;Parent=MS.gene26670.t1 |
| chr8.4 | exon | 9558302 | 9558417 | 9558302 | ID=MS.gene26670.t1.exon2;Parent=MS.gene26670.t1 |
| chr8.4 | CDS | 9558302 | 9558417 | 9558302 | ID=cds.MS.gene26670.t1;Parent=MS.gene26670.t1 |
| chr8.4 | exon | 9557583 | 9557656 | 9557583 | ID=MS.gene26670.t1.exon3;Parent=MS.gene26670.t1 |
| chr8.4 | CDS | 9557583 | 9557656 | 9557583 | ID=cds.MS.gene26670.t1;Parent=MS.gene26670.t1 |
| chr8.4 | exon | 9556792 | 9557056 | 9556792 | ID=MS.gene26670.t1.exon4;Parent=MS.gene26670.t1 |
| chr8.4 | CDS | 9556792 | 9557056 | 9556792 | ID=cds.MS.gene26670.t1;Parent=MS.gene26670.t1 |
| chr8.4 | exon | 9556332 | 9556463 | 9556332 | ID=MS.gene26670.t1.exon5;Parent=MS.gene26670.t1 |
| chr8.4 | CDS | 9556332 | 9556463 | 9556332 | ID=cds.MS.gene26670.t1;Parent=MS.gene26670.t1 |
| chr8.4 | exon | 9556024 | 9556159 | 9556024 | ID=MS.gene26670.t1.exon6;Parent=MS.gene26670.t1 |
| chr8.4 | CDS | 9556024 | 9556159 | 9556024 | ID=cds.MS.gene26670.t1;Parent=MS.gene26670.t1 |
| chr8.4 | exon | 9555727 | 9555764 | 9555727 | ID=MS.gene26670.t1.exon7;Parent=MS.gene26670.t1 |
| chr8.4 | CDS | 9555727 | 9555764 | 9555727 | ID=cds.MS.gene26670.t1;Parent=MS.gene26670.t1 |
| Gene Sequence |
| Protein sequence |