AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006720.t1 MTR_4g080700 95.588 340 15 0 1 340 1 340 0.0 659
MS.gene006720.t1 MTR_4g080730 93.824 340 21 0 1 340 1 340 0.0 651
MS.gene006720.t1 MTR_5g022560 65.373 335 109 6 11 340 12 344 1.83e-157 445
MS.gene006720.t1 MTR_4g107930 62.899 345 123 4 1 340 1 345 1.29e-156 442
MS.gene006720.t1 MTR_4g079770 65.774 336 106 8 11 340 13 345 2.24e-155 439
MS.gene006720.t1 MTR_4g047610 66.044 321 102 6 25 340 25 343 2.10e-154 437
MS.gene006720.t1 MTR_2g075830 62.974 343 122 5 1 340 1 341 1.01e-152 432
MS.gene006720.t1 MTR_4g079470 66.460 322 100 7 25 340 26 345 1.05e-152 432
MS.gene006720.t1 MTR_4g079800 65.421 321 105 6 25 340 26 345 1.59e-151 430
MS.gene006720.t1 MTR_4g080360 60.058 343 129 5 4 340 2 342 7.34e-150 425
MS.gene006720.t1 MTR_2g083930 58.892 343 124 6 6 338 7 342 3.33e-136 391
MS.gene006720.t1 MTR_3g075390 54.006 337 144 7 10 338 10 343 6.32e-127 368
MS.gene006720.t1 MTR_4g104370 55.655 336 137 8 11 338 11 342 2.60e-125 363
MS.gene006720.t1 MTR_7g078600 58.442 308 120 5 33 338 35 336 2.17e-124 361
MS.gene006720.t1 MTR_7g079230 57.097 310 126 5 32 339 31 335 9.63e-122 354
MS.gene006720.t1 MTR_3g116080 53.274 336 147 6 11 339 15 347 3.74e-119 348
MS.gene006720.t1 MTR_1g107550 55.161 310 131 4 36 338 46 354 3.20e-118 350
MS.gene006720.t1 MTR_4g079440 49.405 336 158 4 13 338 10 343 4.47e-117 342
MS.gene006720.t1 MTR_3g102220 55.484 310 125 7 40 338 53 360 2.02e-114 340
MS.gene006720.t1 MTR_2g090890 48.640 331 166 3 10 339 9 336 1.53e-113 333
MS.gene006720.t1 MTR_4g094918 48.955 335 160 6 14 339 9 341 6.49e-113 332
MS.gene006720.t1 MTR_1g018840 52.597 308 135 6 40 338 55 360 7.23e-111 330
MS.gene006720.t1 MTR_1g018840 52.597 308 135 6 40 338 55 360 1.17e-110 330
MS.gene006720.t1 MTR_3g112430 49.673 306 146 3 41 339 37 341 5.65e-101 305
MS.gene006720.t1 MTR_2g016180 44.379 338 171 8 16 339 21 355 2.53e-87 271
MS.gene006720.t1 MTR_2g016270 44.643 336 158 9 16 339 21 340 1.35e-84 263
MS.gene006720.t1 MTR_2g015850 48.276 290 138 7 56 338 78 362 4.53e-84 259
MS.gene006720.t1 MTR_2g067900 44.892 323 158 7 30 337 6 323 6.14e-80 247
MS.gene006720.t1 MTR_2g064475 41.111 360 157 12 26 339 1 351 1.57e-76 239
MS.gene006720.t1 MTR_2g015920 40.373 322 175 9 23 331 33 350 4.45e-72 228
MS.gene006720.t1 MTR_4g065077 36.813 364 197 11 1 339 1 356 1.29e-71 227
MS.gene006720.t1 MTR_7g078630 47.601 271 104 5 36 295 702 945 5.09e-70 235
MS.gene006720.t1 MTR_2g067560 42.900 331 158 11 26 333 1 323 9.22e-70 234
MS.gene006720.t1 MTR_4g125300 39.799 299 168 7 46 339 57 348 1.05e-68 219
MS.gene006720.t1 MTR_2g066980 37.640 356 160 11 7 339 2 318 2.38e-68 217
MS.gene006720.t1 MTR_2g015930 38.728 346 180 14 10 331 13 350 2.09e-67 216
MS.gene006720.t1 MTR_8g086470 34.986 363 189 11 1 339 17 356 5.06e-64 207
MS.gene006720.t1 MTR_4g071060 35.429 350 190 9 11 331 6 348 1.50e-61 201
MS.gene006720.t1 MTR_1g023210 34.831 356 193 12 8 331 4 352 5.39e-60 197
MS.gene006720.t1 MTR_1g023810 43.478 253 122 8 89 337 26 261 4.09e-58 189
MS.gene006720.t1 MTR_1g094135 35.220 318 171 10 37 331 53 358 3.12e-53 179
MS.gene006720.t1 MTR_4g072790 33.531 337 172 11 10 331 13 312 1.17e-44 155
MS.gene006720.t1 MTR_4g072340 32.743 339 176 9 10 331 13 316 5.30e-43 151
MS.gene006720.t1 MTR_4g073660 31.642 335 185 8 10 331 12 315 1.85e-42 150
MS.gene006720.t1 MTR_7g079130 71.111 90 25 1 250 338 7 96 3.53e-39 134
MS.gene006720.t1 MTR_7g078580 68.041 97 29 2 243 338 5 100 1.99e-38 133
MS.gene006720.t1 MTR_1g025450 36.100 241 117 6 55 292 1 207 7.81e-36 136
MS.gene006720.t1 MTR_2g015840 41.667 156 86 2 8 159 2 156 7.85e-34 125
MS.gene006720.t1 MTR_2g015840 52.252 111 51 2 230 339 162 271 8.54e-32 120
MS.gene006720.t1 MTR_7g078310 44.203 138 70 3 82 217 115 247 1.37e-29 114
MS.gene006720.t1 MTR_2g016380 47.414 116 57 2 227 339 21 135 2.90e-27 107
MS.gene006720.t1 MTR_7g111060 27.839 273 164 11 89 334 67 333 2.70e-21 93.6
MS.gene006720.t1 MTR_2g047960 53.750 80 36 1 133 212 7 85 3.97e-21 87.0
MS.gene006720.t1 MTR_3g029560 28.846 208 122 5 136 338 50 236 4.06e-19 85.5
MS.gene006720.t1 MTR_7g111050 30.357 224 128 8 130 331 110 327 4.89e-19 87.0
MS.gene006720.t1 MTR_7g079260 56.944 72 14 2 266 336 7 62 1.26e-18 80.5
MS.gene006720.t1 MTR_8g087510 35.385 130 78 4 165 292 23 148 7.67e-17 77.4
MS.gene006720.t1 MTR_3g082370 25.792 221 139 7 126 330 2 213 1.08e-13 70.1
MS.gene006720.t1 MTR_1g042480 35.106 94 58 2 10 101 6 98 4.78e-11 60.1
MS.gene006720.t1 MTR_1g042360 35.106 94 58 2 10 101 6 98 4.78e-11 60.1
MS.gene006720.t1 MTR_7g111050 28.866 194 114 7 130 301 105 296 7.01e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006720.t1 AT5G45890 53.216 342 145 7 11 339 6 345 3.27e-129 373
MS.gene006720.t1 AT5G50260 55.977 343 138 8 6 338 2 341 3.75e-128 371
MS.gene006720.t1 AT3G48340 52.286 350 141 8 6 338 2 342 8.96e-120 350
MS.gene006720.t1 AT5G43060 53.468 346 139 7 13 338 9 352 2.35e-118 350
MS.gene006720.t1 AT3G19390 50.716 349 157 6 2 339 1 345 3.39e-116 344
MS.gene006720.t1 AT2G27420 49.133 346 158 6 9 340 7 348 5.80e-115 337
MS.gene006720.t1 AT3G48350 51.327 339 153 7 10 339 8 343 8.08e-115 337
MS.gene006720.t1 AT4G35350 52.795 322 146 5 22 339 33 352 1.07e-114 337
MS.gene006720.t1 AT3G19400 52.787 305 139 3 40 339 44 348 4.23e-114 335
MS.gene006720.t1 AT1G47128 53.947 304 133 5 40 338 50 351 1.13e-113 338
MS.gene006720.t1 AT2G34080 47.076 342 168 6 10 340 6 345 7.63e-113 332
MS.gene006720.t1 AT4G36880 54.019 311 128 7 42 338 51 360 4.52e-112 331
MS.gene006720.t1 AT4G23520 49.263 339 160 7 9 338 13 348 1.72e-111 328
MS.gene006720.t1 AT1G20850 52.751 309 139 4 36 339 47 353 5.47e-111 327
MS.gene006720.t1 AT3G49340 48.555 346 163 7 4 340 2 341 1.79e-110 325
MS.gene006720.t1 AT1G29090 47.826 345 160 9 13 340 14 355 2.22e-109 323
MS.gene006720.t1 AT4G11310 50.164 305 142 6 41 338 50 351 1.28e-107 319
MS.gene006720.t1 AT1G06260 49.245 331 163 5 10 338 14 341 4.69e-107 317
MS.gene006720.t1 AT4G11320 49.180 305 145 5 41 338 57 358 7.87e-107 317
MS.gene006720.t1 AT4G11320 49.180 305 145 5 41 338 57 358 7.87e-107 317
MS.gene006720.t1 AT1G09850 50.163 307 147 4 36 338 28 332 2.78e-103 310
MS.gene006720.t1 AT1G29080 43.895 344 173 8 10 340 10 346 1.65e-102 305
MS.gene006720.t1 AT3G43960 49.186 307 146 6 40 338 41 345 1.56e-92 281
MS.gene006720.t1 AT1G29110 39.031 351 180 6 4 339 2 333 6.70e-87 265
MS.gene006720.t1 AT3G19400 50.633 237 112 3 40 271 44 280 1.10e-78 243
MS.gene006720.t1 AT4G35350 49.225 258 124 6 22 275 33 287 9.70e-77 237
MS.gene006720.t1 AT3G48350 47.619 273 132 6 10 274 8 277 7.44e-76 235
MS.gene006720.t1 AT5G60360 39.748 317 165 9 37 339 52 356 7.10e-71 224
MS.gene006720.t1 AT5G60360 39.432 317 165 10 37 339 52 355 2.65e-68 218
MS.gene006720.t1 AT3G45310 38.462 312 176 8 37 339 52 356 1.70e-67 216
MS.gene006720.t1 AT5G60360 39.286 308 161 9 37 330 52 347 5.17e-67 215
MS.gene006720.t1 AT3G45310 38.141 312 176 9 37 339 52 355 8.20e-65 209
MS.gene006720.t1 AT2G21430 34.870 347 191 11 10 331 13 349 3.16e-62 202
MS.gene006720.t1 AT4G39090 37.987 308 153 10 48 331 59 352 7.68e-60 196
MS.gene006720.t1 AT3G54940 33.696 368 193 12 1 331 1 354 7.08e-55 184
MS.gene006720.t1 AT4G16190 34.754 305 167 9 49 331 64 358 7.29e-51 173
MS.gene006720.t1 AT3G54940 33.096 281 158 8 1 256 1 276 2.46e-39 140
MS.gene006720.t1 AT1G02305 28.470 281 171 10 69 321 49 327 1.80e-23 99.8
MS.gene006720.t1 AT4G01610 27.148 291 178 11 69 331 46 330 1.41e-21 94.4
MS.gene006720.t1 AT4G01610 26.460 291 180 11 69 331 46 330 1.39e-19 89.0
MS.gene006720.t1 AT1G02300 28.713 202 118 7 143 321 146 344 1.28e-16 80.5
MS.gene006720.t1 AT2G22160 42.222 90 49 2 56 143 10 98 2.31e-14 68.9

Find 74 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACTCTTGAAGAATTTA+AGG 0.095428 4.1:+26020512 MS.gene006720:CDS
CTTCCATCAGCTGCTTTATA+AGG 0.204020 4.1:-26021360 None:intergenic
CTAGTTTGCCTGTTGTTATT+TGG 0.228382 4.1:-26021206 None:intergenic
ATCCTCCAATCTACAGCTTC+TGG 0.231368 4.1:-26020612 None:intergenic
TTCCTCCTCCTTGCACTTGC+TGG 0.233030 4.1:+26020279 MS.gene006720:CDS
GTGCTAATGGTACTGATTAT+TGG 0.243422 4.1:+26021601 MS.gene006720:CDS
CATTGACCTTGATCCTTGAT+TGG 0.294386 4.1:-26020651 None:intergenic
GCATCAATAGCAACGGATAT+TGG 0.324041 4.1:-26021483 None:intergenic
CATCTTCTTGTAAGCATTAC+GGG 0.335625 4.1:-26020538 None:intergenic
GCTGTAGATTGGAGGATAAA+AGG 0.355153 4.1:+26020618 MS.gene006720:CDS
AGTGATATCTCGCTATTAAC+TGG 0.363300 4.1:-26021438 None:intergenic
ACTCCTGTGGCTAAGATTAC+AGG 0.367612 4.1:+26021402 MS.gene006720:CDS
TACTCTAGTGGAATTTATAC+AGG 0.372553 4.1:+26021528 MS.gene006720:CDS
GGTGTTACTGCTGTTGGTTA+TGG 0.376619 4.1:+26021576 MS.gene006720:CDS
TGATTAACACTTAGCTTGTA+AGG 0.378815 4.1:-26020480 None:intergenic
ATTGACCTTGATCCTTGATT+GGG 0.383165 4.1:-26020650 None:intergenic
ATTGGATTGTGAAGAATTCA+TGG 0.385037 4.1:+26021619 MS.gene006720:CDS
ACATCTTCTTGTAAGCATTA+CGG 0.405958 4.1:-26020539 None:intergenic
TTCCATCAGCTGCTTTATAA+GGG 0.407574 4.1:-26021359 None:intergenic
AGGATGTGAAGGAGGACTAA+TGG 0.423869 4.1:+26021281 MS.gene006720:CDS
GGCACCGTGTGGGGTGAGAA+AGG 0.436038 4.1:+26021642 MS.gene006720:CDS
CTATTCCAGAAGCTGTAGAT+TGG 0.451892 4.1:+26020607 MS.gene006720:CDS
ATAAAACAAAAGGGAGCTGC+TGG 0.452959 4.1:+26021148 MS.gene006720:intron
GTTGGTTATGGTAGTGCTAA+TGG 0.454494 4.1:+26021588 MS.gene006720:CDS
GATCATGGTGTTACTGCTGT+TGG 0.455069 4.1:+26021570 MS.gene006720:CDS
TTCAACAGTGGCTGCAACTG+AGG 0.464305 4.1:+26021176 MS.gene006720:CDS
GGGGTGAGAAAGGGTACATA+AGG 0.472010 4.1:+26021652 MS.gene006720:CDS
AGGTTAAGCAGTTGGATAAG+AGG 0.480997 4.1:-26021727 None:intergenic
GCACCGTGTGGGGTGAGAAA+GGG 0.483877 4.1:+26021643 MS.gene006720:CDS
GGTATCAACCAAATAACAAC+AGG 0.498716 4.1:+26021198 MS.gene006720:CDS
AATTGGACAGGTTAAGCAGT+TGG 0.511155 4.1:-26021735 None:intergenic
CTAGTTGATTGTGACACAAA+AGG 0.513450 4.1:+26021249 MS.gene006720:CDS
AGGAGCTGTCACCCCAATCA+AGG 0.520534 4.1:+26020638 MS.gene006720:CDS
GCAAAGAGGTATAGCTGCTA+AGG 0.525961 4.1:+26021677 MS.gene006720:CDS
AACTAGTTCTTGTTCTGAGA+GGG 0.531059 4.1:-26021232 None:intergenic
GAAGGAGGACTAATGGAAGA+TGG 0.537127 4.1:+26021288 MS.gene006720:CDS
TACCCTTATAAAGCAGCTGA+TGG 0.537865 4.1:+26021357 MS.gene006720:CDS
TACCAGCAAGTGCAAGGAGG+AGG 0.540483 4.1:-26020281 None:intergenic
TTGGATTGTGAAGAATTCAT+GGG 0.541633 4.1:+26021620 MS.gene006720:CDS
TTCCAGAAGCTGTAGATTGG+AGG 0.544215 4.1:+26020610 MS.gene006720:CDS
TCGTGTCTTTCTTGTAAAGA+CGG 0.545681 4.1:-26020339 None:intergenic
GTCACCCCAATCAAGGATCA+AGG 0.546496 4.1:+26020645 MS.gene006720:CDS
GAATTCATGGGGCACCGTGT+GGG 0.548708 4.1:+26021632 MS.gene006720:CDS
GGTGAAGATCAAGGATGTGA+AGG 0.565154 4.1:+26021270 MS.gene006720:CDS
GACACAAAAGGTGAAGATCA+AGG 0.569459 4.1:+26021261 MS.gene006720:CDS
TCAACAGTGGCTGCAACTGA+GGG 0.573583 4.1:+26021177 MS.gene006720:CDS
AATTCATGGGGCACCGTGTG+GGG 0.574870 4.1:+26021633 MS.gene006720:CDS
TATCCTGTAATCTTAGCCAC+AGG 0.581099 4.1:-26021405 None:intergenic
TGGTAATACCAGCAAGTGCA+AGG 0.586532 4.1:-26020287 None:intergenic
GTACGAAGATGCTATTGAGA+AGG 0.597017 4.1:+26020389 MS.gene006720:CDS
AGGCTTGTGTGGTATTGCCA+TGG 0.602466 4.1:+26021701 MS.gene006720:CDS
GGAATTTATACAGGAGAGTG+TGG 0.605119 4.1:+26021537 MS.gene006720:CDS
AGAATTCATGGGGCACCGTG+TGG 0.606030 4.1:+26021631 MS.gene006720:CDS
GTCACTAGCATCAATAGCAA+CGG 0.611770 4.1:-26021490 None:intergenic
CAACTAGTTCTTGTTCTGAG+AGG 0.612685 4.1:-26021233 None:intergenic
TACAAGAAAGACACGAGCAA+TGG 0.615650 4.1:+26020346 MS.gene006720:CDS
AGTTGGATAAGAGGAATCCA+TGG 0.616687 4.1:-26021718 None:intergenic
CACTGCAACAACCACTCCTG+TGG 0.617333 4.1:+26021389 MS.gene006720:CDS
GAGCAATGGATGGCAGAACA+TGG 0.621675 4.1:+26020360 MS.gene006720:CDS
AGAGGTATAGCTGCTAAGGA+AGG 0.623674 4.1:+26021681 MS.gene006720:CDS
GCTGCTAAGGAAGGCTTGTG+TGG 0.624353 4.1:+26021690 MS.gene006720:CDS
GAAGATCAAGGATGTGAAGG+AGG 0.626945 4.1:+26021273 MS.gene006720:CDS
AGAAAGACACGAGCAATGGA+TGG 0.627864 4.1:+26020350 MS.gene006720:CDS
TTGACCTTGATCCTTGATTG+GGG 0.629476 4.1:-26020649 None:intergenic
TAAAACAAAAGGGAGCTGCT+GGG 0.630725 4.1:+26021149 MS.gene006720:intron
GTACCCTTTCTCACCCCACA+CGG 0.633284 4.1:-26021646 None:intergenic
TGGATTGTGAAGAATTCATG+GGG 0.646576 4.1:+26021621 MS.gene006720:CDS
TGTGGAACTGAGCTAGATCA+TGG 0.649169 4.1:+26021555 MS.gene006720:CDS
CTTCAAGAGTCAAATCAGCA+AGG 0.649995 4.1:-26020503 None:intergenic
GATATCACTTCTCAAAGCTG+TGG 0.652006 4.1:+26021452 MS.gene006720:CDS
TGTAATCTTAGCCACAGGAG+TGG 0.669574 4.1:-26021400 None:intergenic
ATCAAGGATCAAGGTCAATG+TGG 0.689079 4.1:+26020654 MS.gene006720:CDS
GGGTACATAAGGATGCAAAG+AGG 0.705777 4.1:+26021663 MS.gene006720:CDS
TAATACCAGCAAGTGCAAGG+AGG 0.756093 4.1:-26020284 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAATTTATCATTAAAAA+TGG + chr4.1:26021312-26021331 MS.gene006720:CDS 10.0%
!! AACTTCATATTATAATTTAG+TGG - chr4.1:26020888-26020907 None:intergenic 15.0%
!! ATAATAAGAAGAACAATGTA+TGG - chr4.1:26021060-26021079 None:intergenic 20.0%
!! GAATTTATCATTAAAAATGG+TGG + chr4.1:26021315-26021334 MS.gene006720:CDS 20.0%
!! GTCTTGAAAATAAAACAAAA+GGG + chr4.1:26021139-26021158 MS.gene006720:intron 20.0%
!! TAGCAAAAAACAATACATAT+TGG + chr4.1:26020251-26020270 MS.gene006720:CDS 20.0%
!! TGTCTTGAAAATAAAACAAA+AGG + chr4.1:26021138-26021157 MS.gene006720:intron 20.0%
!!! AGGTAAATAAAAAGTTGTTT+TGG + chr4.1:26020795-26020814 MS.gene006720:intron 20.0%
! ACAATGTATGGCATATAATA+AGG - chr4.1:26021048-26021067 None:intergenic 25.0%
! CAATGTATGGCATATAATAA+GGG - chr4.1:26021047-26021066 None:intergenic 25.0%
! TTTGACTCTTGAAGAATTTA+AGG + chr4.1:26020512-26020531 MS.gene006720:CDS 25.0%
!!! ACAACTTTTTATTTACCTCT+TGG - chr4.1:26020793-26020812 None:intergenic 25.0%
!!! TAATTTTAAGTTAAGCCAAG+AGG + chr4.1:26020775-26020794 MS.gene006720:intron 25.0%
!!! TATGTATTGTTTTTTGCTAG+TGG - chr4.1:26020250-26020269 None:intergenic 25.0%
!!! TTTTTTTGACTGAGTCTAAT+TGG + chr4.1:26021087-26021106 MS.gene006720:intron 25.0%
ACATCTTCTTGTAAGCATTA+CGG - chr4.1:26020542-26020561 None:intergenic 30.0%
ATTGGATTGTGAAGAATTCA+TGG + chr4.1:26021619-26021638 MS.gene006720:CDS 30.0%
TACTCTAGTGGAATTTATAC+AGG + chr4.1:26021528-26021547 MS.gene006720:CDS 30.0%
TGATAAATGACCCTCAATTA+CGG - chr4.1:26020854-26020873 None:intergenic 30.0%
TTGGATTGTGAAGAATTCAT+GGG + chr4.1:26021620-26021639 MS.gene006720:CDS 30.0%
! AGTTTCATGTTTTACTCTAG+TGG + chr4.1:26021516-26021535 MS.gene006720:CDS 30.0%
!! TGATTAACACTTAGCTTGTA+AGG - chr4.1:26020483-26020502 None:intergenic 30.0%
!!! TAAAAAGTTGTTTTGGTCGA+AGG + chr4.1:26020802-26020821 MS.gene006720:intron 30.0%
AGTGATATCTCGCTATTAAC+TGG - chr4.1:26021441-26021460 None:intergenic 35.0%
ATTGACCTTGATCCTTGATT+GGG - chr4.1:26020653-26020672 None:intergenic 35.0%
CATCTTCTTGTAAGCATTAC+GGG - chr4.1:26020541-26020560 None:intergenic 35.0%
CTAGTTGATTGTGACACAAA+AGG + chr4.1:26021249-26021268 MS.gene006720:CDS 35.0%
GAGTTCATTTCCTTAGAAAC+AGG - chr4.1:26020752-26020771 None:intergenic 35.0%
GGTATCAACCAAATAACAAC+AGG + chr4.1:26021198-26021217 MS.gene006720:CDS 35.0%
TCGTGTCTTTCTTGTAAAGA+CGG - chr4.1:26020342-26020361 None:intergenic 35.0%
TGGATTGTGAAGAATTCATG+GGG + chr4.1:26021621-26021640 MS.gene006720:CDS 35.0%
! CTAGTTTGCCTGTTGTTATT+TGG - chr4.1:26021209-26021228 None:intergenic 35.0%
! GTGCATAAGGTACTATTACA+AGG + chr4.1:26020947-26020966 MS.gene006720:intron 35.0%
! TTCCATCAGCTGCTTTATAA+GGG - chr4.1:26021362-26021381 None:intergenic 35.0%
!! AACTAGTTCTTGTTCTGAGA+GGG - chr4.1:26021235-26021254 None:intergenic 35.0%
!! GTGCTAATGGTACTGATTAT+TGG + chr4.1:26021601-26021620 MS.gene006720:CDS 35.0%
!! TCTTGATTCTCCTGTTTCTA+AGG + chr4.1:26020739-26020758 MS.gene006720:intron 35.0%
ACCCTCAATTACGGTTGAAT+AGG - chr4.1:26020845-26020864 None:intergenic 40.0%
AGTTGGATAAGAGGAATCCA+TGG - chr4.1:26021721-26021740 None:intergenic 40.0%
ATAAAACAAAAGGGAGCTGC+TGG + chr4.1:26021148-26021167 MS.gene006720:intron 40.0%
ATCAAGGATCAAGGTCAATG+TGG + chr4.1:26020654-26020673 MS.gene006720:CDS 40.0%
CATTGACCTTGATCCTTGAT+TGG - chr4.1:26020654-26020673 None:intergenic 40.0%
CCCTATTCAACCGTAATTGA+GGG + chr4.1:26020841-26020860 MS.gene006720:intron 40.0%
CCCTCAATTACGGTTGAATA+GGG - chr4.1:26020844-26020863 None:intergenic 40.0%
CTATTCCAGAAGCTGTAGAT+TGG + chr4.1:26020607-26020626 MS.gene006720:CDS 40.0%
CTTCAAGAGTCAAATCAGCA+AGG - chr4.1:26020506-26020525 None:intergenic 40.0%
GACACAAAAGGTGAAGATCA+AGG + chr4.1:26021261-26021280 MS.gene006720:CDS 40.0%
GATATCACTTCTCAAAGCTG+TGG + chr4.1:26021452-26021471 MS.gene006720:CDS 40.0%
GCATCAATAGCAACGGATAT+TGG - chr4.1:26021486-26021505 None:intergenic 40.0%
GCTGTAGATTGGAGGATAAA+AGG + chr4.1:26020618-26020637 MS.gene006720:CDS 40.0%
GGAATTTATACAGGAGAGTG+TGG + chr4.1:26021537-26021556 MS.gene006720:CDS 40.0%
GTACGAAGATGCTATTGAGA+AGG + chr4.1:26020389-26020408 MS.gene006720:CDS 40.0%
GTCACTAGCATCAATAGCAA+CGG - chr4.1:26021493-26021512 None:intergenic 40.0%
TAAAACAAAAGGGAGCTGCT+GGG + chr4.1:26021149-26021168 MS.gene006720:intron 40.0%
TACAAGAAAGACACGAGCAA+TGG + chr4.1:26020346-26020365 MS.gene006720:CDS 40.0%
TACCCTTATAAAGCAGCTGA+TGG + chr4.1:26021357-26021376 MS.gene006720:CDS 40.0%
TATCCTGTAATCTTAGCCAC+AGG - chr4.1:26021408-26021427 None:intergenic 40.0%
TTGACCTTGATCCTTGATTG+GGG - chr4.1:26020652-26020671 None:intergenic 40.0%
! ACGGTGACTCATACAGTTTT+CGG - chr4.1:26020323-26020342 None:intergenic 40.0%
! ACTATTGACTGCTGTGCATA+AGG + chr4.1:26020934-26020953 MS.gene006720:intron 40.0%
! CAACTAGTTCTTGTTCTGAG+AGG - chr4.1:26021236-26021255 None:intergenic 40.0%
! CTTCCATCAGCTGCTTTATA+AGG - chr4.1:26021363-26021382 None:intergenic 40.0%
! GTTGGTTATGGTAGTGCTAA+TGG + chr4.1:26021588-26021607 MS.gene006720:CDS 40.0%
ACTCCTGTGGCTAAGATTAC+AGG + chr4.1:26021402-26021421 MS.gene006720:CDS 45.0%
AGAAAGACACGAGCAATGGA+TGG + chr4.1:26020350-26020369 MS.gene006720:CDS 45.0%
AGGATGTGAAGGAGGACTAA+TGG + chr4.1:26021281-26021300 MS.gene006720:CDS 45.0%
ATCCTCCAATCTACAGCTTC+TGG - chr4.1:26020615-26020634 None:intergenic 45.0%
CAATTACGGTTGAATAGGGC+AGG - chr4.1:26020840-26020859 None:intergenic 45.0%
GAAGATCAAGGATGTGAAGG+AGG + chr4.1:26021273-26021292 MS.gene006720:CDS 45.0%
GAAGGAGGACTAATGGAAGA+TGG + chr4.1:26021288-26021307 MS.gene006720:CDS 45.0%
GCCCTATTCAACCGTAATTG+AGG + chr4.1:26020840-26020859 MS.gene006720:intron 45.0%
GGGTACATAAGGATGCAAAG+AGG + chr4.1:26021663-26021682 MS.gene006720:CDS 45.0%
GGTGAAGATCAAGGATGTGA+AGG + chr4.1:26021270-26021289 MS.gene006720:CDS 45.0%
TAATACCAGCAAGTGCAAGG+AGG - chr4.1:26020287-26020306 None:intergenic 45.0%
TGGTAATACCAGCAAGTGCA+AGG - chr4.1:26020290-26020309 None:intergenic 45.0%
TGTAATCTTAGCCACAGGAG+TGG - chr4.1:26021403-26021422 None:intergenic 45.0%
TGTGGAACTGAGCTAGATCA+TGG + chr4.1:26021555-26021574 MS.gene006720:CDS 45.0%
TTCCAGAAGCTGTAGATTGG+AGG + chr4.1:26020610-26020629 MS.gene006720:CDS 45.0%
! AGAGGTATAGCTGCTAAGGA+AGG + chr4.1:26021681-26021700 MS.gene006720:CDS 45.0%
! CGGTGACTCATACAGTTTTC+GGG - chr4.1:26020322-26020341 None:intergenic 45.0%
! GCAAAGAGGTATAGCTGCTA+AGG + chr4.1:26021677-26021696 MS.gene006720:CDS 45.0%
!! CAGTTTTCGGGACATGACAT+TGG - chr4.1:26020310-26020329 None:intergenic 45.0%
!! GATCATGGTGTTACTGCTGT+TGG + chr4.1:26021570-26021589 MS.gene006720:CDS 45.0%
!! GGTGTTACTGCTGTTGGTTA+TGG + chr4.1:26021576-26021595 MS.gene006720:CDS 45.0%
AGGCTTGTGTGGTATTGCCA+TGG + chr4.1:26021701-26021720 MS.gene006720:CDS 50.0%
GAGCAATGGATGGCAGAACA+TGG + chr4.1:26020360-26020379 MS.gene006720:CDS 50.0%
GTCACCCCAATCAAGGATCA+AGG + chr4.1:26020645-26020664 MS.gene006720:CDS 50.0%
TCAACAGTGGCTGCAACTGA+GGG + chr4.1:26021177-26021196 MS.gene006720:CDS 50.0%
TTCAACAGTGGCTGCAACTG+AGG + chr4.1:26021176-26021195 MS.gene006720:CDS 50.0%
! CTGCTGGGCATTTTCAACAG+TGG + chr4.1:26021164-26021183 MS.gene006720:CDS 50.0%
! GGGGTGAGAAAGGGTACATA+AGG + chr4.1:26021652-26021671 MS.gene006720:CDS 50.0%
AGGAGCTGTCACCCCAATCA+AGG + chr4.1:26020638-26020657 MS.gene006720:CDS 55.0%
CACTGCAACAACCACTCCTG+TGG + chr4.1:26021389-26021408 MS.gene006720:CDS 55.0%
GCTGCTAAGGAAGGCTTGTG+TGG + chr4.1:26021690-26021709 MS.gene006720:CDS 55.0%
GTACCCTTTCTCACCCCACA+CGG - chr4.1:26021649-26021668 None:intergenic 55.0%
TACCAGCAAGTGCAAGGAGG+AGG - chr4.1:26020284-26020303 None:intergenic 55.0%
TTCCTCCTCCTTGCACTTGC+TGG + chr4.1:26020279-26020298 MS.gene006720:CDS 55.0%
!! AATTCATGGGGCACCGTGTG+GGG + chr4.1:26021633-26021652 MS.gene006720:CDS 55.0%
!! AGAATTCATGGGGCACCGTG+TGG + chr4.1:26021631-26021650 MS.gene006720:CDS 55.0%
!! GAATTCATGGGGCACCGTGT+GGG + chr4.1:26021632-26021651 MS.gene006720:CDS 55.0%
GCACCGTGTGGGGTGAGAAA+GGG + chr4.1:26021643-26021662 MS.gene006720:CDS 60.0%
GGCACCGTGTGGGGTGAGAA+AGG + chr4.1:26021642-26021661 MS.gene006720:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 26020240 26021746 26020240 ID=MS.gene006720
chr4.1 mRNA 26020240 26021746 26020240 ID=MS.gene006720.t1;Parent=MS.gene006720
chr4.1 exon 26020240 26020675 26020240 ID=MS.gene006720.t1.exon1;Parent=MS.gene006720.t1
chr4.1 CDS 26020240 26020675 26020240 ID=cds.MS.gene006720.t1;Parent=MS.gene006720.t1
chr4.1 exon 26021160 26021746 26021160 ID=MS.gene006720.t1.exon2;Parent=MS.gene006720.t1
chr4.1 CDS 26021160 26021746 26021160 ID=cds.MS.gene006720.t1;Parent=MS.gene006720.t1
Gene Sequence

>MS.gene006720

ATGGTTTCCACTAGCAAAAAACAATACATATTGGCTCTGTTCCTCCTCCTTGCACTTGCTGGTATTACCAATGTCATGTCCCGAAAACTGTATGAGTCACCGTCTTTACAAGAAAGACACGAGCAATGGATGGCAGAACATGGCAAAGTGTACGAAGATGCTATTGAGAAGGAAAAACGTTTCATGATATTCAAAGACAATGTTGAGTTCATTGAATCATTCAATGCTGCTAACAACAAACCTTACAAGCTAAGTGTTAATCACCTTGCTGATTTGACTCTTGAAGAATTTAAGGCTTCCCGTAATGCTTACAAGAAGATGTCTCGTGAGTATACTACAACATCATTTAAGTATGAAAATGTTACTGCTATTCCAGAAGCTGTAGATTGGAGGATAAAAGGAGCTGTCACCCCAATCAAGGATCAAGGTCAATGTGGTAAGATAAACAATGAACAATATCATACACACAAATACTGATTTCTTATATAAATATACTTTGTCTTGATTCTCCTGTTTCTAAGGAAATGAACTCTAGTAATTTTAAGTTAAGCCAAGAGGTAAATAAAAAGTTGTTTTGGTCGAAGGCATTCAGATGATCCTGCCCTATTCAACCGTAATTGAGGGTCATTTATCATTTGAGCTCAACCACTAAATTATAATATGAAGTTAAATGCACAAATGTTCAATCTATCATACTATTGACTGCTGTGCATAAGGTACTATTACAAGGTGTCACAAATATGATTGAATGTCAGTGCAATAATGATAATTTTTTTACAAAATTGTCAATGCTTACTTAATAAACCCTTATTATATGCCATACATTGTTCTTCTTATTATGATTTTTTTTTTTTGACTGAGTCTAATTGGATTGAATAATTAATGTTTGTGTTAATTTTGTCTTGAAAATAAAACAAAAGGGAGCTGCTGGGCATTTTCAACAGTGGCTGCAACTGAGGGTATCAACCAAATAACAACAGGCAAACTAGTCTCCCTCTCAGAACAAGAACTAGTTGATTGTGACACAAAAGGTGAAGATCAAGGATGTGAAGGAGGACTAATGGAAGATGGATTTGAATTTATCATTAAAAATGGTGGAATTACAAGTGAGACTAATTACCCTTATAAAGCAGCTGATGGAAGTTGTAACACTGCAACAACCACTCCTGTGGCTAAGATTACAGGATATGAGAAAGTTCCAGTTAATAGCGAGATATCACTTCTCAAAGCTGTGGCTAATCAACCAATATCCGTTGCTATTGATGCTAGTGACTCGAGTTTCATGTTTTACTCTAGTGGAATTTATACAGGAGAGTGTGGAACTGAGCTAGATCATGGTGTTACTGCTGTTGGTTATGGTAGTGCTAATGGTACTGATTATTGGATTGTGAAGAATTCATGGGGCACCGTGTGGGGTGAGAAAGGGTACATAAGGATGCAAAGAGGTATAGCTGCTAAGGAAGGCTTGTGTGGTATTGCCATGGATTCCTCTTATCCAACTGCTTAA
Protein sequence

>MS.gene006720.t1

MVSTSKKQYILALFLLLALAGITNVMSRKLYESPSLQERHEQWMAEHGKVYEDAIEKEKRFMIFKDNVEFIESFNAANNKPYKLSVNHLADLTLEEFKASRNAYKKMSREYTTTSFKYENVTAIPEAVDWRIKGAVTPIKDQGQCGSCWAFSTVAATEGINQITTGKLVSLSEQELVDCDTKGEDQGCEGGLMEDGFEFIIKNGGITSETNYPYKAADGSCNTATTTPVAKITGYEKVPVNSEISLLKAVANQPISVAIDASDSSFMFYSSGIYTGECGTELDHGVTAVGYGSANGTDYWIVKNSWGTVWGEKGYIRMQRGIAAKEGLCGIAMDSSYPTA