AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031580.t1 MTR_4g080700 94.706 340 18 0 1 340 1 340 0.0 651
MS.gene031580.t1 MTR_4g080730 93.529 340 22 0 1 340 1 340 0.0 649
MS.gene031580.t1 MTR_5g022560 64.776 335 111 6 11 340 12 344 4.80e-155 439
MS.gene031580.t1 MTR_4g107930 62.319 345 125 4 1 340 1 345 2.38e-154 437
MS.gene031580.t1 MTR_4g079770 65.179 336 108 8 11 340 13 345 3.95e-153 434
MS.gene031580.t1 MTR_4g047610 65.421 321 104 6 25 340 25 343 2.85e-152 431
MS.gene031580.t1 MTR_4g079470 65.839 322 102 7 25 340 26 345 1.62e-150 427
MS.gene031580.t1 MTR_2g075830 62.391 343 124 5 1 340 1 341 2.99e-150 426
MS.gene031580.t1 MTR_4g080360 60.058 343 129 5 4 340 2 342 3.53e-150 426
MS.gene031580.t1 MTR_4g079800 64.798 321 107 6 25 340 26 345 2.30e-149 424
MS.gene031580.t1 MTR_2g083930 58.601 343 125 6 6 338 7 342 4.23e-136 390
MS.gene031580.t1 MTR_3g075390 53.913 345 146 8 4 338 2 343 4.08e-127 368
MS.gene031580.t1 MTR_4g104370 55.655 336 137 8 11 338 11 342 1.22e-124 362
MS.gene031580.t1 MTR_7g078600 58.117 308 121 5 33 338 35 336 2.64e-123 358
MS.gene031580.t1 MTR_7g079230 56.774 310 127 5 32 339 31 335 1.00e-120 351
MS.gene031580.t1 MTR_3g116080 53.274 336 147 6 11 339 15 347 3.62e-119 348
MS.gene031580.t1 MTR_1g107550 55.806 310 129 5 36 338 46 354 9.91e-119 351
MS.gene031580.t1 MTR_4g079440 49.405 336 158 4 13 338 10 343 5.04e-117 342
MS.gene031580.t1 MTR_2g090890 48.521 338 170 3 2 338 1 335 3.44e-115 337
MS.gene031580.t1 MTR_3g102220 54.839 310 127 7 40 338 53 360 1.33e-113 338
MS.gene031580.t1 MTR_4g094918 48.955 335 160 6 14 339 9 341 2.62e-112 330
MS.gene031580.t1 MTR_1g018840 52.597 308 135 6 40 338 55 360 2.39e-111 332
MS.gene031580.t1 MTR_1g018840 52.597 308 135 6 40 338 55 360 3.84e-111 332
MS.gene031580.t1 MTR_3g112430 49.346 306 147 3 41 339 37 341 3.56e-100 303
MS.gene031580.t1 MTR_2g016180 44.379 338 171 8 16 339 21 355 4.78e-87 270
MS.gene031580.t1 MTR_2g016270 44.048 336 160 8 16 339 21 340 1.76e-84 263
MS.gene031580.t1 MTR_2g015850 48.276 290 138 7 56 338 78 362 6.27e-84 258
MS.gene031580.t1 MTR_2g067900 44.892 323 158 7 30 337 6 323 7.15e-80 247
MS.gene031580.t1 MTR_2g064475 41.111 360 157 12 26 339 1 351 1.62e-76 239
MS.gene031580.t1 MTR_2g015920 40.373 322 175 9 23 331 33 350 5.58e-72 228
MS.gene031580.t1 MTR_4g065077 36.813 364 197 11 1 339 1 356 6.06e-72 228
MS.gene031580.t1 MTR_2g067560 42.900 331 158 11 26 333 1 323 1.03e-69 234
MS.gene031580.t1 MTR_7g078630 47.601 271 104 5 36 295 702 945 1.24e-69 234
MS.gene031580.t1 MTR_2g066980 37.640 356 160 11 7 339 2 318 1.07e-68 218
MS.gene031580.t1 MTR_2g015930 38.728 346 180 14 10 331 13 350 1.05e-67 216
MS.gene031580.t1 MTR_4g125300 39.465 299 169 7 46 339 57 348 1.55e-67 216
MS.gene031580.t1 MTR_8g086470 34.986 363 189 11 1 339 17 356 2.46e-64 208
MS.gene031580.t1 MTR_4g071060 35.429 350 190 9 11 331 6 348 5.02e-62 202
MS.gene031580.t1 MTR_1g023210 35.112 356 192 12 8 331 4 352 6.76e-61 199
MS.gene031580.t1 MTR_1g023810 41.985 262 139 9 82 337 7 261 3.59e-58 189
MS.gene031580.t1 MTR_1g094135 35.220 318 171 10 37 331 53 358 3.54e-53 179
MS.gene031580.t1 MTR_4g072790 33.531 337 172 11 10 331 13 312 1.66e-45 158
MS.gene031580.t1 MTR_4g072340 32.743 339 176 9 10 331 13 316 9.70e-44 153
MS.gene031580.t1 MTR_4g073660 31.642 335 185 8 10 331 12 315 2.84e-43 152
MS.gene031580.t1 MTR_7g079130 70.000 90 26 1 250 338 7 96 2.77e-38 132
MS.gene031580.t1 MTR_7g078580 67.010 97 30 2 243 338 5 100 1.33e-37 131
MS.gene031580.t1 MTR_1g025450 36.100 241 117 6 55 292 1 207 4.37e-35 134
MS.gene031580.t1 MTR_2g015840 41.667 156 86 2 8 159 2 156 2.14e-33 124
MS.gene031580.t1 MTR_2g015840 51.351 111 52 2 230 339 162 271 5.66e-31 118
MS.gene031580.t1 MTR_7g078310 44.203 138 70 3 82 217 115 247 2.53e-29 114
MS.gene031580.t1 MTR_2g016380 47.414 116 57 2 227 339 21 135 9.87e-27 106
MS.gene031580.t1 MTR_7g111060 28.571 273 162 10 89 334 67 333 1.80e-22 97.1
MS.gene031580.t1 MTR_2g047960 53.750 80 36 1 133 212 7 85 4.83e-21 86.7
MS.gene031580.t1 MTR_7g111050 27.778 270 162 10 89 331 64 327 4.88e-20 90.1
MS.gene031580.t1 MTR_3g029560 28.846 208 122 5 136 338 50 236 8.31e-19 84.7
MS.gene031580.t1 MTR_7g079260 55.556 72 15 2 266 336 7 62 4.26e-18 79.0
MS.gene031580.t1 MTR_8g087510 35.385 130 78 4 165 292 23 148 8.31e-17 77.4
MS.gene031580.t1 MTR_3g082370 25.792 221 139 7 126 330 2 213 1.03e-13 70.1
MS.gene031580.t1 MTR_7g111050 25.833 240 149 9 89 301 59 296 1.24e-11 65.1
MS.gene031580.t1 MTR_1g042480 35.484 93 57 2 10 100 6 97 6.35e-11 59.7
MS.gene031580.t1 MTR_1g042360 35.484 93 57 2 10 100 6 97 6.35e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031580.t1 AT5G45890 53.509 342 144 7 11 339 6 345 1.52e-130 377
MS.gene031580.t1 AT5G50260 55.685 343 139 8 6 338 2 341 7.62e-128 370
MS.gene031580.t1 AT3G48340 52.161 347 146 7 6 338 2 342 2.59e-120 351
MS.gene031580.t1 AT5G43060 53.314 347 138 8 13 338 9 352 6.61e-118 348
MS.gene031580.t1 AT3G19390 50.432 347 161 6 2 339 1 345 3.07e-116 344
MS.gene031580.t1 AT3G19400 53.922 306 134 4 40 339 44 348 1.17e-115 339
MS.gene031580.t1 AT3G48350 51.327 339 153 7 10 339 8 343 2.09e-115 338
MS.gene031580.t1 AT4G35350 52.795 322 146 5 22 339 33 352 1.05e-114 337
MS.gene031580.t1 AT2G27420 48.844 346 159 6 9 340 7 348 4.80e-114 335
MS.gene031580.t1 AT1G47128 53.947 304 133 5 40 338 50 351 1.88e-113 337
MS.gene031580.t1 AT4G23520 49.558 339 159 7 9 338 13 348 3.00e-113 333
MS.gene031580.t1 AT2G34080 47.076 342 168 6 10 340 6 345 2.64e-112 330
MS.gene031580.t1 AT4G36880 54.662 311 126 8 42 338 51 360 2.29e-111 329
MS.gene031580.t1 AT1G20850 52.751 309 139 4 36 339 47 353 4.70e-111 327
MS.gene031580.t1 AT3G49340 48.974 341 159 7 9 340 7 341 2.98e-110 325
MS.gene031580.t1 AT1G29090 47.826 345 160 9 13 340 14 355 7.67e-109 322
MS.gene031580.t1 AT1G06260 49.245 331 163 5 10 338 14 341 8.78e-108 318
MS.gene031580.t1 AT4G11310 50.164 305 142 6 41 338 50 351 9.67e-108 319
MS.gene031580.t1 AT4G11320 49.180 305 145 5 41 338 57 358 8.13e-107 317
MS.gene031580.t1 AT4G11320 49.180 305 145 5 41 338 57 358 8.13e-107 317
MS.gene031580.t1 AT1G29080 43.895 344 173 8 10 340 10 346 1.70e-102 305
MS.gene031580.t1 AT1G09850 49.837 307 148 4 36 338 28 332 2.20e-102 308
MS.gene031580.t1 AT3G43960 49.186 307 146 6 40 338 41 345 5.06e-93 282
MS.gene031580.t1 AT1G29110 39.266 354 179 7 1 339 1 333 2.90e-86 263
MS.gene031580.t1 AT3G19400 51.681 238 108 4 40 271 44 280 5.05e-79 243
MS.gene031580.t1 AT4G35350 49.225 258 124 6 22 275 33 287 7.24e-77 238
MS.gene031580.t1 AT3G48350 47.619 273 132 6 10 274 8 277 4.42e-76 236
MS.gene031580.t1 AT5G60360 40.575 313 168 9 37 339 52 356 2.13e-70 223
MS.gene031580.t1 AT5G60360 40.256 313 168 10 37 339 52 355 8.11e-68 217
MS.gene031580.t1 AT3G45310 38.095 315 173 9 37 339 52 356 6.86e-67 214
MS.gene031580.t1 AT5G60360 40.132 304 164 9 37 330 52 347 1.65e-66 213
MS.gene031580.t1 AT3G45310 37.778 315 173 10 37 339 52 355 2.61e-64 207
MS.gene031580.t1 AT2G21430 34.870 347 191 11 10 331 13 349 7.77e-62 201
MS.gene031580.t1 AT4G39090 37.662 308 154 10 48 331 59 352 9.98e-59 194
MS.gene031580.t1 AT3G54940 33.696 368 193 12 1 331 1 354 1.04e-54 183
MS.gene031580.t1 AT4G16190 34.754 305 167 9 49 331 64 358 2.32e-51 174
MS.gene031580.t1 AT3G54940 33.096 281 158 8 1 256 1 276 3.01e-39 140
MS.gene031580.t1 AT1G02305 28.522 291 174 11 69 331 49 333 1.17e-24 103
MS.gene031580.t1 AT4G01610 27.491 291 177 11 69 331 46 330 8.41e-23 97.8
MS.gene031580.t1 AT4G01610 26.804 291 179 11 69 331 46 330 8.62e-21 92.4
MS.gene031580.t1 AT1G02300 28.774 212 121 8 143 331 146 350 6.32e-17 81.3
MS.gene031580.t1 AT2G22160 42.222 90 49 2 56 143 10 98 6.06e-14 67.8

Find 71 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACTCTTGAAGAATTTA+AGG 0.095428 4.4:+31203231 MS.gene031580:CDS
CTTCCATCAGCTGCTTTATA+AGG 0.204020 4.4:-31204081 None:intergenic
CTAGTTTGCCTGTTGTTATT+TGG 0.228382 4.4:-31203927 None:intergenic
ATCCTCCAATCTACAGCTTC+TGG 0.231368 4.4:-31203331 None:intergenic
ACATCTTCTTGTAAGCATTA+AGG 0.232565 4.4:-31203258 None:intergenic
TTCCTCCTCCTTGCACTTGC+TGG 0.233030 4.4:+31202998 MS.gene031580:CDS
GTGCTAATGGTACTGATTAT+TGG 0.233750 4.4:+31204322 MS.gene031580:CDS
CATCTTCTTGTAAGCATTAA+GGG 0.318308 4.4:-31203257 None:intergenic
GCATCAATAGCAACGGATAT+TGG 0.324041 4.4:-31204204 None:intergenic
CATTGACCTTGATCCTTGAT+TGG 0.351180 4.4:-31203370 None:intergenic
AGGGTGTGAAGGAGGATTAA+TGG 0.352534 4.4:+31204002 MS.gene031580:CDS
GCTGTAGATTGGAGGATAAA+AGG 0.355153 4.4:+31203337 MS.gene031580:CDS
AGTGATATCTCGCTATTAAC+TGG 0.363300 4.4:-31204159 None:intergenic
TGATTAACACTTAGCTTGTA+AGG 0.378815 4.4:-31203199 None:intergenic
TACTCAAGTGGAATTTATAC+AGG 0.383702 4.4:+31204249 MS.gene031580:CDS
ATTGGATTGTGAAGAATTCA+TGG 0.385037 4.4:+31204340 MS.gene031580:CDS
TTCCATCAGCTGCTTTATAA+GGG 0.407574 4.4:-31204080 None:intergenic
GGTGTTACTGCTGTTGGTTA+TGG 0.413445 4.4:+31204297 MS.gene031580:CDS
ACTCCCGTGGCTAAGATTAC+AGG 0.436830 4.4:+31204123 MS.gene031580:CDS
GCAAAGAGGTATAGCTGATA+AGG 0.441935 4.4:+31204398 MS.gene031580:CDS
GTTGGTTATGGAAGTGCTAA+TGG 0.447369 4.4:+31204309 MS.gene031580:CDS
CTATTCCAGAAGCTGTAGAT+TGG 0.451892 4.4:+31203326 MS.gene031580:CDS
ATAAAACAAAAGGGAGCTGC+TGG 0.452959 4.4:+31203869 MS.gene031580:intron
TTCAACAGTGGCTGCAACTG+AGG 0.464305 4.4:+31203897 MS.gene031580:CDS
GGCACTGTGTGGGGTGAGAA+AGG 0.467978 4.4:+31204363 MS.gene031580:CDS
GGGGTGAGAAAGGGTACATA+AGG 0.472010 4.4:+31204373 MS.gene031580:CDS
GAAGGAGGATTAATGGAAGA+TGG 0.478030 4.4:+31204009 MS.gene031580:CDS
GAATTCATGGGGCACTGTGT+GGG 0.493508 4.4:+31204353 MS.gene031580:CDS
GGTATCAACCAAATAACAAC+AGG 0.498716 4.4:+31203919 MS.gene031580:CDS
AGGAGCTGTCACTCCAATCA+AGG 0.498742 4.4:+31203357 MS.gene031580:CDS
GAAGATCAAGGGTGTGAAGG+AGG 0.508416 4.4:+31203994 MS.gene031580:CDS
AATTGAACAGGTTAAGCAGT+TGG 0.511155 4.4:-31204456 None:intergenic
CTAGTTGATTGTGACACAAA+AGG 0.513450 4.4:+31203970 MS.gene031580:CDS
GGTGAAGATCAAGGGTGTGA+AGG 0.514157 4.4:+31203991 MS.gene031580:CDS
GCACTGTGTGGGGTGAGAAA+GGG 0.521846 4.4:+31204364 MS.gene031580:CDS
AACTAGTTCTTGTTCTGAGA+GGG 0.531059 4.4:-31203953 None:intergenic
GTCACTCCAATCAAGGATCA+AGG 0.533051 4.4:+31203364 MS.gene031580:CDS
GACACAAAAGGTGAAGATCA+AGG 0.535775 4.4:+31203982 MS.gene031580:CDS
TACCCTTATAAAGCAGCTGA+TGG 0.537865 4.4:+31204078 MS.gene031580:CDS
TACCAGCAAGTGCAAGGAGG+AGG 0.540483 4.4:-31203000 None:intergenic
TTGGATTGTGAAGAATTCAT+GGG 0.541633 4.4:+31204341 MS.gene031580:CDS
TTCCAGAAGCTGTAGATTGG+AGG 0.544215 4.4:+31203329 MS.gene031580:CDS
TCGTGTCTTTCTTGTAAAGA+CGG 0.545681 4.4:-31203058 None:intergenic
GATCACGGTGTTACTGCTGT+TGG 0.562900 4.4:+31204291 MS.gene031580:CDS
GGAATTTATACAGGAGAATG+TGG 0.568803 4.4:+31204258 MS.gene031580:CDS
TCAACAGTGGCTGCAACTGA+GGG 0.573583 4.4:+31203898 MS.gene031580:CDS
TGTAATCTTAGCCACGGGAG+TGG 0.581852 4.4:-31204121 None:intergenic
TGGTAATACCAGCAAGTGCA+AGG 0.586532 4.4:-31203006 None:intergenic
AGAATTCATGGGGCACTGTG+TGG 0.587890 4.4:+31204352 MS.gene031580:CDS
AATTCATGGGGCACTGTGTG+GGG 0.587905 4.4:+31204354 MS.gene031580:CDS
ACACAAAAGGTGAAGATCAA+GGG 0.588949 4.4:+31203983 MS.gene031580:CDS
GTACGAAGATGCTATTGAGA+AGG 0.597017 4.4:+31203108 MS.gene031580:CDS
ATATCCTGTAATCTTAGCCA+CGG 0.601713 4.4:-31204127 None:intergenic
AGGCTTGTGTGGTATTGCCA+TGG 0.602466 4.4:+31204422 MS.gene031580:CDS
CAACTAGTTCTTGTTCTGAG+AGG 0.612685 4.4:-31203954 None:intergenic
TATCCTGTAATCTTAGCCAC+GGG 0.613249 4.4:-31204126 None:intergenic
TACAAGAAAGACACGAGCAA+TGG 0.615650 4.4:+31203065 MS.gene031580:CDS
AGTTGGATAAGAAGAATCCA+TGG 0.617565 4.4:-31204439 None:intergenic
GTCACTAGCATCAATAGCAA+CGG 0.619447 4.4:-31204211 None:intergenic
CACTGCAACAACCACTCCCG+TGG 0.619772 4.4:+31204110 MS.gene031580:CDS
GAGCAATGGATGGCAGAACA+TGG 0.621675 4.4:+31203079 MS.gene031580:CDS
TGTGGAACTGAGCTCGATCA+CGG 0.626251 4.4:+31204276 MS.gene031580:CDS
AGAAAGACACGAGCAATGGA+TGG 0.627864 4.4:+31203069 MS.gene031580:CDS
TAAAACAAAAGGGAGCTGCT+GGG 0.630725 4.4:+31203870 MS.gene031580:intron
GCTGATAAGGAAGGCTTGTG+TGG 0.633118 4.4:+31204411 MS.gene031580:CDS
AGAGGTATAGCTGATAAGGA+AGG 0.636631 4.4:+31204402 MS.gene031580:CDS
TGGATTGTGAAGAATTCATG+GGG 0.646576 4.4:+31204342 MS.gene031580:CDS
CTTCAAGAGTCAAATCAGCA+AGG 0.649995 4.4:-31203222 None:intergenic
ATCAAGGATCAAGGTCAATG+TGG 0.671685 4.4:+31203373 MS.gene031580:CDS
GGGTACATAAGGATGCAAAG+AGG 0.705777 4.4:+31204384 MS.gene031580:CDS
TAATACCAGCAAGTGCAAGG+AGG 0.756093 4.4:-31203003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAATTTATCATTAAAAA+TGG + chr4.4:31204033-31204052 MS.gene031580:CDS 10.0%
!! AACTTCATATTATAATTTAG+TGG - chr4.4:31203607-31203626 None:intergenic 15.0%
!! AATGTATGGCATATATAATA+AGG - chr4.4:31203769-31203788 None:intergenic 20.0%
!! ATAATAAGAAGAACAATGTA+TGG - chr4.4:31203783-31203802 None:intergenic 20.0%
!! ATGTATGGCATATATAATAA+GGG - chr4.4:31203768-31203787 None:intergenic 20.0%
!! GAATTTATCATTAAAAATGG+TGG + chr4.4:31204036-31204055 MS.gene031580:CDS 20.0%
!! GTCTTGAAAATAAAACAAAA+GGG + chr4.4:31203860-31203879 MS.gene031580:intron 20.0%
!! TACCAAAAAACAATACATAT+TGG + chr4.4:31202970-31202989 MS.gene031580:CDS 20.0%
!! TGTCTTGAAAATAAAACAAA+AGG + chr4.4:31203859-31203878 MS.gene031580:intron 20.0%
! TTTGACTCTTGAAGAATTTA+AGG + chr4.4:31203231-31203250 MS.gene031580:CDS 25.0%
!! AGGCAAATAAAAAGTTGTTT+TGG + chr4.4:31203514-31203533 MS.gene031580:intron 25.0%
!!! AGCCAATATGTATTGTTTTT+TGG - chr4.4:31202975-31202994 None:intergenic 25.0%
!!! TAATTTTAAGTTAAGCCAAG+AGG + chr4.4:31203494-31203513 MS.gene031580:intron 25.0%
!!! TATGTATTGTTTTTTGGTAG+TGG - chr4.4:31202969-31202988 None:intergenic 25.0%
!!! TTTTTTTGACTGAGTCTAAT+TGG + chr4.4:31203808-31203827 MS.gene031580:intron 25.0%
ACATCTTCTTGTAAGCATTA+AGG - chr4.4:31203261-31203280 None:intergenic 30.0%
ATTGGATTGTGAAGAATTCA+TGG + chr4.4:31204340-31204359 MS.gene031580:CDS 30.0%
CATCTTCTTGTAAGCATTAA+GGG - chr4.4:31203260-31203279 None:intergenic 30.0%
TACTCAAGTGGAATTTATAC+AGG + chr4.4:31204249-31204268 MS.gene031580:CDS 30.0%
TGATAAATGACCCTCAATTA+CGG - chr4.4:31203573-31203592 None:intergenic 30.0%
TTGGATTGTGAAGAATTCAT+GGG + chr4.4:31204341-31204360 MS.gene031580:CDS 30.0%
! AGTTTCATGTTTTACTCAAG+TGG + chr4.4:31204237-31204256 MS.gene031580:CDS 30.0%
!! ACAACTTTTTATTTGCCTCT+TGG - chr4.4:31203512-31203531 None:intergenic 30.0%
!! TGATTAACACTTAGCTTGTA+AGG - chr4.4:31203202-31203221 None:intergenic 30.0%
!!! TAAAAAGTTGTTTTGGTCGA+AGG + chr4.4:31203521-31203540 MS.gene031580:intron 30.0%
ACACAAAAGGTGAAGATCAA+GGG + chr4.4:31203983-31204002 MS.gene031580:CDS 35.0%
ACCTATTCAACCGTAATTGA+GGG + chr4.4:31203560-31203579 MS.gene031580:intron 35.0%
AGTGATATCTCGCTATTAAC+TGG - chr4.4:31204162-31204181 None:intergenic 35.0%
AGTTGGATAAGAAGAATCCA+TGG - chr4.4:31204442-31204461 None:intergenic 35.0%
ATATCCTGTAATCTTAGCCA+CGG - chr4.4:31204130-31204149 None:intergenic 35.0%
CTAGTTGATTGTGACACAAA+AGG + chr4.4:31203970-31203989 MS.gene031580:CDS 35.0%
GAGTTCATTTCCTTAGAAAC+AGG - chr4.4:31203471-31203490 None:intergenic 35.0%
GGAATTTATACAGGAGAATG+TGG + chr4.4:31204258-31204277 MS.gene031580:CDS 35.0%
GGTATCAACCAAATAACAAC+AGG + chr4.4:31203919-31203938 MS.gene031580:CDS 35.0%
TCGTGTCTTTCTTGTAAAGA+CGG - chr4.4:31203061-31203080 None:intergenic 35.0%
TGGATTGTGAAGAATTCATG+GGG + chr4.4:31204342-31204361 MS.gene031580:CDS 35.0%
! CTAGTTTGCCTGTTGTTATT+TGG - chr4.4:31203930-31203949 None:intergenic 35.0%
! GTGCATAAGGTACTATTACA+AGG + chr4.4:31203667-31203686 MS.gene031580:intron 35.0%
! TTCCATCAGCTGCTTTATAA+GGG - chr4.4:31204083-31204102 None:intergenic 35.0%
!! AACTAGTTCTTGTTCTGAGA+GGG - chr4.4:31203956-31203975 None:intergenic 35.0%
!! GTGCTAATGGTACTGATTAT+TGG + chr4.4:31204322-31204341 MS.gene031580:CDS 35.0%
!! TCTTGATTCTCCTGTTTCTA+AGG + chr4.4:31203458-31203477 MS.gene031580:intron 35.0%
ACCCTCAATTACGGTTGAAT+AGG - chr4.4:31203564-31203583 None:intergenic 40.0%
ATAAAACAAAAGGGAGCTGC+TGG + chr4.4:31203869-31203888 MS.gene031580:intron 40.0%
ATCAAGGATCAAGGTCAATG+TGG + chr4.4:31203373-31203392 MS.gene031580:CDS 40.0%
CAATTACGGTTGAATAGGTC+AGG - chr4.4:31203559-31203578 None:intergenic 40.0%
CATTGACCTTGATCCTTGAT+TGG - chr4.4:31203373-31203392 None:intergenic 40.0%
CTATTCCAGAAGCTGTAGAT+TGG + chr4.4:31203326-31203345 MS.gene031580:CDS 40.0%
CTTCAAGAGTCAAATCAGCA+AGG - chr4.4:31203225-31203244 None:intergenic 40.0%
GAAGGAGGATTAATGGAAGA+TGG + chr4.4:31204009-31204028 MS.gene031580:CDS 40.0%
GACACAAAAGGTGAAGATCA+AGG + chr4.4:31203982-31204001 MS.gene031580:CDS 40.0%
GACCTATTCAACCGTAATTG+AGG + chr4.4:31203559-31203578 MS.gene031580:intron 40.0%
GCATCAATAGCAACGGATAT+TGG - chr4.4:31204207-31204226 None:intergenic 40.0%
GCTGTAGATTGGAGGATAAA+AGG + chr4.4:31203337-31203356 MS.gene031580:CDS 40.0%
GTACGAAGATGCTATTGAGA+AGG + chr4.4:31203108-31203127 MS.gene031580:CDS 40.0%
GTCACTAGCATCAATAGCAA+CGG - chr4.4:31204214-31204233 None:intergenic 40.0%
TAAAACAAAAGGGAGCTGCT+GGG + chr4.4:31203870-31203889 MS.gene031580:intron 40.0%
TACAAGAAAGACACGAGCAA+TGG + chr4.4:31203065-31203084 MS.gene031580:CDS 40.0%
TACCCTTATAAAGCAGCTGA+TGG + chr4.4:31204078-31204097 MS.gene031580:CDS 40.0%
TATCCTGTAATCTTAGCCAC+GGG - chr4.4:31204129-31204148 None:intergenic 40.0%
! ACGGTGACTCATACAGTTTT+CGG - chr4.4:31203042-31203061 None:intergenic 40.0%
! ACTATTGACTGCTGTGCATA+AGG + chr4.4:31203654-31203673 MS.gene031580:intron 40.0%
! AGAGGTATAGCTGATAAGGA+AGG + chr4.4:31204402-31204421 MS.gene031580:CDS 40.0%
! CAACTAGTTCTTGTTCTGAG+AGG - chr4.4:31203957-31203976 None:intergenic 40.0%
! CTTCCATCAGCTGCTTTATA+AGG - chr4.4:31204084-31204103 None:intergenic 40.0%
! GCAAAGAGGTATAGCTGATA+AGG + chr4.4:31204398-31204417 MS.gene031580:CDS 40.0%
!! GTTGGTTATGGAAGTGCTAA+TGG + chr4.4:31204309-31204328 MS.gene031580:CDS 40.0%
AGAAAGACACGAGCAATGGA+TGG + chr4.4:31203069-31203088 MS.gene031580:CDS 45.0%
AGGGTGTGAAGGAGGATTAA+TGG + chr4.4:31204002-31204021 MS.gene031580:CDS 45.0%
ATCCTCCAATCTACAGCTTC+TGG - chr4.4:31203334-31203353 None:intergenic 45.0%
GGGTACATAAGGATGCAAAG+AGG + chr4.4:31204384-31204403 MS.gene031580:CDS 45.0%
GTCACTCCAATCAAGGATCA+AGG + chr4.4:31203364-31203383 MS.gene031580:CDS 45.0%
TAATACCAGCAAGTGCAAGG+AGG - chr4.4:31203006-31203025 None:intergenic 45.0%
TGGTAATACCAGCAAGTGCA+AGG - chr4.4:31203009-31203028 None:intergenic 45.0%
TTCCAGAAGCTGTAGATTGG+AGG + chr4.4:31203329-31203348 MS.gene031580:CDS 45.0%
! CGGTGACTCATACAGTTTTC+GGG - chr4.4:31203041-31203060 None:intergenic 45.0%
!! CAGTTTTCGGGACATGACAT+TGG - chr4.4:31203029-31203048 None:intergenic 45.0%
!! GGTGTTACTGCTGTTGGTTA+TGG + chr4.4:31204297-31204316 MS.gene031580:CDS 45.0%
ACTCCCGTGGCTAAGATTAC+AGG + chr4.4:31204123-31204142 MS.gene031580:CDS 50.0%
AGGAGCTGTCACTCCAATCA+AGG + chr4.4:31203357-31203376 MS.gene031580:CDS 50.0%
AGGCTTGTGTGGTATTGCCA+TGG + chr4.4:31204422-31204441 MS.gene031580:CDS 50.0%
GAGCAATGGATGGCAGAACA+TGG + chr4.4:31203079-31203098 MS.gene031580:CDS 50.0%
GCTGATAAGGAAGGCTTGTG+TGG + chr4.4:31204411-31204430 MS.gene031580:CDS 50.0%
TCAACAGTGGCTGCAACTGA+GGG + chr4.4:31203898-31203917 MS.gene031580:CDS 50.0%
TGTAATCTTAGCCACGGGAG+TGG - chr4.4:31204124-31204143 None:intergenic 50.0%
TGTGGAACTGAGCTCGATCA+CGG + chr4.4:31204276-31204295 MS.gene031580:CDS 50.0%
TTCAACAGTGGCTGCAACTG+AGG + chr4.4:31203897-31203916 MS.gene031580:CDS 50.0%
! CTGCTGGGCATTTTCAACAG+TGG + chr4.4:31203885-31203904 MS.gene031580:CDS 50.0%
! GAAGATCAAGGGTGTGAAGG+AGG + chr4.4:31203994-31204013 MS.gene031580:CDS 50.0%
! GGGGTGAGAAAGGGTACATA+AGG + chr4.4:31204373-31204392 MS.gene031580:CDS 50.0%
! GGTGAAGATCAAGGGTGTGA+AGG + chr4.4:31203991-31204010 MS.gene031580:CDS 50.0%
!! AATTCATGGGGCACTGTGTG+GGG + chr4.4:31204354-31204373 MS.gene031580:CDS 50.0%
!! AGAATTCATGGGGCACTGTG+TGG + chr4.4:31204352-31204371 MS.gene031580:CDS 50.0%
!! GAATTCATGGGGCACTGTGT+GGG + chr4.4:31204353-31204372 MS.gene031580:CDS 50.0%
!! GATCACGGTGTTACTGCTGT+TGG + chr4.4:31204291-31204310 MS.gene031580:CDS 50.0%
GCACTGTGTGGGGTGAGAAA+GGG + chr4.4:31204364-31204383 MS.gene031580:CDS 55.0%
TACCAGCAAGTGCAAGGAGG+AGG - chr4.4:31203003-31203022 None:intergenic 55.0%
TTCCTCCTCCTTGCACTTGC+TGG + chr4.4:31202998-31203017 MS.gene031580:CDS 55.0%
CACTGCAACAACCACTCCCG+TGG + chr4.4:31204110-31204129 MS.gene031580:CDS 60.0%
GGCACTGTGTGGGGTGAGAA+AGG + chr4.4:31204363-31204382 MS.gene031580:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 31202959 31204467 31202959 ID=MS.gene031580
chr4.4 mRNA 31202959 31204467 31202959 ID=MS.gene031580.t1;Parent=MS.gene031580
chr4.4 exon 31202959 31203394 31202959 ID=MS.gene031580.t1.exon1;Parent=MS.gene031580.t1
chr4.4 CDS 31202959 31203394 31202959 ID=cds.MS.gene031580.t1;Parent=MS.gene031580.t1
chr4.4 exon 31203881 31204467 31203881 ID=MS.gene031580.t1.exon2;Parent=MS.gene031580.t1
chr4.4 CDS 31203881 31204467 31203881 ID=cds.MS.gene031580.t1;Parent=MS.gene031580.t1
Gene Sequence

>MS.gene031580

ATGGTTTCCACTACCAAAAAACAATACATATTGGCTCTGTTCCTCCTCCTTGCACTTGCTGGTATTACCAATGTCATGTCCCGAAAACTGTATGAGTCACCGTCTTTACAAGAAAGACACGAGCAATGGATGGCAGAACATGGCAAAGTGTACGAAGATGCTATTGAGAAGGAAAAACGTTTCATGATATTCAAAGACAATGTTGAGTTCATTGAATCATTCAATGCTGCTAACAACAAACCTTACAAGCTAAGTGTTAATCACCTTGCTGATTTGACTCTTGAAGAATTTAAGGCTTCCCTTAATGCTTACAAGAAGATGTCTCGTGAGTATACTACAACATCATTTAAGTATGAAAATGTTACTGCTATTCCAGAAGCTGTAGATTGGAGGATAAAAGGAGCTGTCACTCCAATCAAGGATCAAGGTCAATGTGGTAAGATAAACAATGAACAATATCATACACACAAATACTGATATCTTATATAAATATACTTTGTCTTGATTCTCCTGTTTCTAAGGAAATGAACTCTAGTAATTTTAAGTTAAGCCAAGAGGCAAATAAAAAGTTGTTTTGGTCGAAGGCATTCAGATGATCCTGACCTATTCAACCGTAATTGAGGGTCATTTATCATTTGAGCTCAACCACTAAATTATAATATGAAGTTAAAATGCACAAATGTTCAATCTATCATACTATTGACTGCTGTGCATAAGGTACTATTACAAGGTGTCACAAATATGATTGAATGTCAGTGCAATAATTGATAGTTTTTTTACAAAATTGTCAATGCTTACTTAATAAACCCTTATTATATATGCCATACATTGTTCTTCTTATTATGATTTTTTTTTTGACTGAGTCTAATTGGATTGAATAATTAATGTTTGTGTTAATTTTGTCTTGAAAATAAAACAAAAGGGAGCTGCTGGGCATTTTCAACAGTGGCTGCAACTGAGGGTATCAACCAAATAACAACAGGCAAACTAGTCTCCCTCTCAGAACAAGAACTAGTTGATTGTGACACAAAAGGTGAAGATCAAGGGTGTGAAGGAGGATTAATGGAAGATGGATTTGAATTTATCATTAAAAATGGTGGAATTACAAGTGAGACTAATTACCCTTATAAAGCAGCTGATGGAAGTTGTAACACTGCAACAACCACTCCCGTGGCTAAGATTACAGGATATGAGAAAGTTCCAGTTAATAGCGAGATATCACTTCTCAAAGCTGTTGCTAATCAACCAATATCCGTTGCTATTGATGCTAGTGACTCAAGTTTCATGTTTTACTCAAGTGGAATTTATACAGGAGAATGTGGAACTGAGCTCGATCACGGTGTTACTGCTGTTGGTTATGGAAGTGCTAATGGTACTGATTATTGGATTGTGAAGAATTCATGGGGCACTGTGTGGGGTGAGAAAGGGTACATAAGGATGCAAAGAGGTATAGCTGATAAGGAAGGCTTGTGTGGTATTGCCATGGATTCTTCTTATCCAACTGCTTAA
Protein sequence

>MS.gene031580.t1

MVSTTKKQYILALFLLLALAGITNVMSRKLYESPSLQERHEQWMAEHGKVYEDAIEKEKRFMIFKDNVEFIESFNAANNKPYKLSVNHLADLTLEEFKASLNAYKKMSREYTTTSFKYENVTAIPEAVDWRIKGAVTPIKDQGQCGSCWAFSTVAATEGINQITTGKLVSLSEQELVDCDTKGEDQGCEGGLMEDGFEFIIKNGGITSETNYPYKAADGSCNTATTTPVAKITGYEKVPVNSEISLLKAVANQPISVAIDASDSSFMFYSSGIYTGECGTELDHGVTAVGYGSANGTDYWIVKNSWGTVWGEKGYIRMQRGIADKEGLCGIAMDSSYPTA