AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033151

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033151.t1 MTR_4g107930 97.101 345 10 0 1 345 1 345 0.0 701
MS.gene033151.t1 MTR_4g079770 89.306 346 35 2 1 345 1 345 0.0 641
MS.gene033151.t1 MTR_5g022560 87.826 345 41 1 1 345 1 344 0.0 634
MS.gene033151.t1 MTR_4g047610 87.246 345 42 2 1 345 1 343 0.0 612
MS.gene033151.t1 MTR_4g079470 91.049 324 27 2 23 345 23 345 0.0 611
MS.gene033151.t1 MTR_4g079800 87.654 324 38 2 23 345 23 345 0.0 589
MS.gene033151.t1 MTR_2g075830 75.942 345 79 3 1 345 1 341 0.0 525
MS.gene033151.t1 MTR_4g080700 65.732 321 104 5 26 345 25 340 4.42e-153 434
MS.gene033151.t1 MTR_4g080730 65.732 321 104 5 26 345 25 340 2.66e-152 432
MS.gene033151.t1 MTR_4g080360 53.314 347 155 5 1 345 1 342 1.64e-131 379
MS.gene033151.t1 MTR_4g104370 55.331 347 146 7 1 343 1 342 2.66e-129 374
MS.gene033151.t1 MTR_2g083930 52.754 345 149 5 4 343 7 342 1.30e-128 372
MS.gene033151.t1 MTR_4g079440 53.043 345 143 6 11 343 6 343 3.83e-125 363
MS.gene033151.t1 MTR_3g075390 51.594 345 143 6 15 343 7 343 4.11e-124 361
MS.gene033151.t1 MTR_7g078600 57.419 310 121 6 35 343 37 336 8.52e-121 352
MS.gene033151.t1 MTR_2g090890 50.898 334 157 4 11 344 10 336 8.28e-119 347
MS.gene033151.t1 MTR_3g116080 51.622 339 151 7 11 344 17 347 1.44e-117 344
MS.gene033151.t1 MTR_7g079230 55.016 309 131 5 35 343 34 334 4.34e-117 342
MS.gene033151.t1 MTR_1g107550 55.063 316 131 7 34 343 44 354 2.65e-116 345
MS.gene033151.t1 MTR_4g094918 49.711 346 156 9 10 344 3 341 2.81e-114 336
MS.gene033151.t1 MTR_1g018840 52.336 321 134 7 32 343 50 360 3.18e-110 329
MS.gene033151.t1 MTR_1g018840 52.336 321 134 7 32 343 50 360 5.69e-110 329
MS.gene033151.t1 MTR_3g102220 52.063 315 133 7 40 343 53 360 2.43e-109 327
MS.gene033151.t1 MTR_3g112430 50.482 311 141 5 41 344 37 341 3.35e-102 308
MS.gene033151.t1 MTR_2g015850 53.793 290 127 5 56 343 78 362 1.95e-98 296
MS.gene033151.t1 MTR_2g016180 45.087 346 169 10 12 344 18 355 8.79e-90 278
MS.gene033151.t1 MTR_2g016270 44.898 343 159 10 12 344 18 340 6.17e-88 272
MS.gene033151.t1 MTR_2g067900 45.646 333 157 13 23 342 2 323 2.09e-79 246
MS.gene033151.t1 MTR_2g064475 41.714 350 147 17 39 344 15 351 1.04e-72 229
MS.gene033151.t1 MTR_2g067560 45.652 322 142 14 39 339 15 324 1.67e-72 241
MS.gene033151.t1 MTR_2g015920 37.677 353 194 12 11 344 13 358 6.59e-69 220
MS.gene033151.t1 MTR_4g125300 42.071 309 160 10 42 344 53 348 7.37e-69 219
MS.gene033151.t1 MTR_7g078630 45.035 282 113 5 34 304 700 950 2.33e-68 231
MS.gene033151.t1 MTR_2g066980 36.798 356 164 13 10 344 3 318 4.35e-67 214
MS.gene033151.t1 MTR_4g065077 38.509 322 177 10 34 344 45 356 2.15e-65 211
MS.gene033151.t1 MTR_2g015930 39.623 318 172 11 38 344 50 358 1.50e-64 209
MS.gene033151.t1 MTR_4g071060 39.871 311 161 9 46 341 54 353 5.48e-63 204
MS.gene033151.t1 MTR_1g023210 38.700 323 156 12 38 336 48 352 4.42e-62 202
MS.gene033151.t1 MTR_1g094135 36.236 356 192 10 9 341 20 363 3.41e-61 201
MS.gene033151.t1 MTR_1g023810 44.206 233 121 6 113 342 35 261 9.65e-61 196
MS.gene033151.t1 MTR_8g086470 36.875 320 169 9 34 344 61 356 1.34e-59 196
MS.gene033151.t1 MTR_4g072790 34.202 307 156 10 42 341 50 317 1.05e-43 153
MS.gene033151.t1 MTR_7g078580 64.286 98 34 1 246 343 4 100 1.31e-41 142
MS.gene033151.t1 MTR_2g015840 49.664 149 72 2 16 162 9 156 3.18e-41 145
MS.gene033151.t1 MTR_2g015840 56.250 112 48 1 233 344 161 271 1.20e-36 133
MS.gene033151.t1 MTR_7g079130 70.000 90 27 0 254 343 7 96 1.18e-40 138
MS.gene033151.t1 MTR_4g072340 33.657 309 159 10 42 341 50 321 2.62e-39 142
MS.gene033151.t1 MTR_4g073660 33.657 309 159 10 42 341 49 320 3.03e-39 142
MS.gene033151.t1 MTR_1g025450 39.344 183 84 8 121 297 47 208 2.21e-30 121
MS.gene033151.t1 MTR_7g078310 43.571 140 70 2 83 220 115 247 1.53e-28 111
MS.gene033151.t1 MTR_2g016380 46.281 121 58 4 228 344 18 135 1.35e-26 106
MS.gene033151.t1 MTR_7g079260 59.722 72 13 1 270 341 7 62 3.21e-22 90.5
MS.gene033151.t1 MTR_7g111060 25.714 280 173 8 79 336 64 330 1.43e-21 94.7
MS.gene033151.t1 MTR_8g087510 42.748 131 68 5 168 296 23 148 1.51e-21 90.5
MS.gene033151.t1 MTR_3g029560 27.200 250 150 8 99 344 16 237 6.45e-21 90.5
MS.gene033151.t1 MTR_7g111050 29.661 236 134 9 133 344 110 337 1.04e-20 92.0
MS.gene033151.t1 MTR_2g047960 49.412 85 42 1 136 220 7 90 4.34e-19 81.6
MS.gene033151.t1 MTR_3g082370 25.962 208 132 7 132 323 5 206 2.71e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033151.t1 AT5G45890 54.986 351 145 6 1 344 1 345 4.04e-135 388
MS.gene033151.t1 AT5G50260 54.046 346 133 6 16 343 4 341 1.27e-128 372
MS.gene033151.t1 AT3G48340 53.582 349 136 9 11 343 4 342 8.18e-124 360
MS.gene033151.t1 AT2G34080 51.462 342 155 6 11 345 8 345 8.77e-122 354
MS.gene033151.t1 AT4G35350 49.858 351 160 7 3 344 9 352 7.88e-119 347
MS.gene033151.t1 AT3G49340 50.000 342 146 7 21 345 8 341 5.29e-116 340
MS.gene033151.t1 AT2G27420 49.425 348 159 6 12 345 4 348 6.25e-116 340
MS.gene033151.t1 AT3G48350 50.720 347 154 7 11 344 1 343 4.28e-115 338
MS.gene033151.t1 AT3G19390 49.853 339 163 5 7 344 13 345 4.53e-114 338
MS.gene033151.t1 AT5G43060 52.761 326 140 7 25 343 34 352 1.95e-113 337
MS.gene033151.t1 AT1G29090 47.701 348 167 8 7 345 14 355 1.77e-111 328
MS.gene033151.t1 AT1G20850 52.077 313 144 4 34 344 45 353 3.06e-111 328
MS.gene033151.t1 AT1G06260 51.176 340 153 6 10 343 9 341 1.21e-110 326
MS.gene033151.t1 AT4G36880 51.553 322 141 7 32 343 44 360 3.45e-110 326
MS.gene033151.t1 AT3G19400 49.379 322 156 5 25 344 32 348 2.38e-109 323
MS.gene033151.t1 AT1G29080 47.399 346 169 8 8 345 6 346 4.35e-108 320
MS.gene033151.t1 AT1G47128 50.809 309 140 7 40 343 50 351 1.01e-106 320
MS.gene033151.t1 AT1G09850 49.355 310 154 3 34 343 26 332 4.80e-101 305
MS.gene033151.t1 AT4G23520 44.857 350 168 10 11 343 7 348 2.22e-99 298
MS.gene033151.t1 AT4G11310 47.896 309 148 6 41 343 50 351 1.23e-98 296
MS.gene033151.t1 AT4G11320 47.249 309 150 6 41 343 57 358 6.77e-98 295
MS.gene033151.t1 AT4G11320 47.249 309 150 6 41 343 57 358 6.77e-98 295
MS.gene033151.t1 AT1G29110 42.045 352 177 9 1 344 1 333 1.22e-88 270
MS.gene033151.t1 AT3G43960 46.226 318 157 9 32 343 36 345 1.28e-86 266
MS.gene033151.t1 AT4G35350 46.667 285 136 7 3 278 9 286 7.29e-84 256
MS.gene033151.t1 AT3G19400 47.266 256 129 4 25 278 32 283 2.16e-75 234
MS.gene033151.t1 AT3G48350 46.619 281 133 7 11 278 1 277 3.07e-75 234
MS.gene033151.t1 AT5G60360 43.042 309 157 11 42 344 61 356 2.10e-71 226
MS.gene033151.t1 AT3G45310 40.673 327 171 12 24 344 47 356 7.64e-69 219
MS.gene033151.t1 AT5G60360 42.718 309 157 12 42 344 61 355 8.82e-69 219
MS.gene033151.t1 AT5G60360 42.333 300 154 11 42 335 61 347 5.38e-67 215
MS.gene033151.t1 AT3G45310 40.122 329 173 13 23 345 46 356 2.49e-66 213
MS.gene033151.t1 AT4G39090 38.298 329 170 11 32 341 43 357 8.44e-63 204
MS.gene033151.t1 AT2G21430 35.028 354 197 11 6 336 6 349 1.25e-62 204
MS.gene033151.t1 AT3G54940 35.833 360 182 13 11 336 10 354 3.76e-59 195
MS.gene033151.t1 AT4G16190 38.095 315 166 10 45 341 60 363 6.00e-57 189
MS.gene033151.t1 AT3G54940 35.165 273 148 8 11 260 10 276 1.66e-43 152
MS.gene033151.t1 AT1G02305 30.222 225 129 8 133 336 116 333 2.03e-22 97.1
MS.gene033151.t1 AT4G01610 26.923 286 177 9 76 336 52 330 6.51e-22 95.5
MS.gene033151.t1 AT4G01610 26.573 286 178 9 76 336 52 330 1.22e-20 92.0
MS.gene033151.t1 AT1G02300 29.245 212 122 7 146 336 146 350 2.07e-18 85.9
MS.gene033151.t1 AT2G22160 39.130 92 54 1 55 146 9 98 3.78e-14 68.2

Find 85 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAATTGCAACAGAAAT+AGG 0.303591 8.2:-17666602 None:intergenic
TCAATATGGCAAAGTCTATA+AGG 0.330619 8.2:+17665862 MS.gene033151:CDS
TACAAAAGTGGTGTCTTTAC+CGG 0.332301 8.2:+17666647 MS.gene033151:CDS
AGGTTGTGAGGGTGGTCTTA+TGG 0.350865 8.2:+17666397 MS.gene033151:CDS
ATCCATGCAGCTACCATTAC+CGG 0.382562 8.2:+17666521 MS.gene033151:CDS
TTGCAATGCCTGCTCATTGT+TGG 0.384601 8.2:-17666561 None:intergenic
AATAACAAGCTATACAAGTT+AGG 0.429513 8.2:+17665962 MS.gene033151:CDS
GGAATTAATAAGTTGAGTAC+TGG 0.441256 8.2:+17666314 MS.gene033151:CDS
GGAACTGAGTGGGGTGAAGA+AGG 0.443728 8.2:+17666764 MS.gene033151:CDS
GAGCAATGGATGAGTCAATA+TGG 0.445016 8.2:+17665848 MS.gene033151:CDS
AATGCCTGCTCATTGTTGGC+AGG 0.451756 8.2:-17666557 None:intergenic
TTCCGTCAACACCTTGATAA+GGG 0.456935 8.2:-17666475 None:intergenic
GGCAGGGACATCTTCATAAC+CGG 0.462180 8.2:-17666540 None:intergenic
GTTCCGTCAACACCTTGATA+AGG 0.464383 8.2:-17666476 None:intergenic
CAATCCCGTCCGTTGTGGAT+TGG 0.469084 8.2:+17666104 MS.gene033151:CDS
GTTCTTAACCAACCAATACT+TGG 0.469107 8.2:-17666735 None:intergenic
AAGTTTGACAATTAAGCAGT+AGG 0.473215 8.2:-17666857 None:intergenic
TAAGTTGAGTACTGGAAAGT+TGG 0.474031 8.2:+17666322 MS.gene033151:CDS
AGCATCTAGAAATAAATTCA+AGG 0.484430 8.2:+17666024 MS.gene033151:CDS
AGATGCTATGAACTCCTCAT+TGG 0.488280 8.2:-17666008 None:intergenic
GACATCTTCATAACCGGTAA+TGG 0.491069 8.2:-17666534 None:intergenic
CATTGACCTTGATTCTTCAC+AGG 0.495833 8.2:-17666148 None:intergenic
ATTGGTTGGTTAAGAACTCA+TGG 0.497126 8.2:+17666741 MS.gene033151:CDS
CAACTCGGTTCCACATGAAC+CGG 0.497716 8.2:-17666666 None:intergenic
GGGGTGAAGAAGGATACATT+AGG 0.500551 8.2:+17666774 MS.gene033151:CDS
GGTGTCACCGCTGTAGGTTA+TGG 0.501955 8.2:+17666695 MS.gene033151:CDS
AGGATACATTAGGATGCAAA+GGG 0.504604 8.2:+17666784 MS.gene033151:CDS
TCTATAAGGATCCTCAAGAA+AGG 0.505398 8.2:+17665876 MS.gene033151:CDS
TCCCGTCCGTTGTGGATTGG+AGG 0.514340 8.2:+17666107 MS.gene033151:CDS
GGTTATGGTGTCGGTAATGA+TGG 0.515702 8.2:+17666710 MS.gene033151:CDS
CTATAAGGATCCTCAAGAAA+GGG 0.516295 8.2:+17665877 MS.gene033151:CDS
AGACGTTCCTCCCTTTCTTG+AGG 0.517763 8.2:-17665887 None:intergenic
TTGCTCGTGCCTCTCATACA+TGG 0.519986 8.2:-17665831 None:intergenic
TACCCTTATCAAGGTGTTGA+CGG 0.520036 8.2:+17666473 MS.gene033151:CDS
AAATTCATTATTCAAAATCG+TGG 0.522237 8.2:+17666431 MS.gene033151:CDS
TTCCTCCAATCCACAACGGA+CGG 0.522694 8.2:-17666109 None:intergenic
CAATTGCAACAGAAATAGGT+TGG 0.523600 8.2:-17666598 None:intergenic
AGTTTGACAATTAAGCAGTA+GGG 0.525933 8.2:-17666856 None:intergenic
GATCATGGTGTCACCGCTGT+AGG 0.528394 8.2:+17666689 MS.gene033151:CDS
TCAGCTGTTGCAGCGACTGA+AGG 0.530010 8.2:+17666293 MS.gene033151:CDS
GAACTCATGGGGAACTGAGT+GGG 0.530453 8.2:+17666754 MS.gene033151:CDS
CTTGTTGATTGTGACACAAA+AGG 0.533495 8.2:+17666365 MS.gene033151:CDS
AAGGATACATTAGGATGCAA+AGG 0.533659 8.2:+17666783 MS.gene033151:CDS
TGTATGAGAGGCACGAGCAA+TGG 0.535639 8.2:+17665834 MS.gene033151:CDS
TCTCATACATGGAGTCGACT+TGG 0.538645 8.2:-17665820 None:intergenic
GTGGACCAAGGTTGTGAGGG+TGG 0.540762 8.2:+17666389 MS.gene033151:CDS
GTTACACCTGTGAAGAATCA+AGG 0.542932 8.2:+17666142 MS.gene033151:CDS
TCCTCCAATCCACAACGGAC+GGG 0.547637 8.2:-17666108 None:intergenic
GTTGTGGATTGGAGGAAGAA+AGG 0.549943 8.2:+17666115 MS.gene033151:CDS
AAATTGAAAGTCAGATCCAC+TGG 0.552701 8.2:-17666624 None:intergenic
GGTAATGGTAGCTGCATGGA+TGG 0.553763 8.2:-17666519 None:intergenic
GATGCCGCTGAAGGACTTTG+TGG 0.554041 8.2:+17666812 MS.gene033151:CDS
TGTCCCTGCCAACAATGAGC+AGG 0.557594 8.2:+17666553 MS.gene033151:CDS
GTAATGATGGAACCAAGTAT+TGG 0.568388 8.2:+17666723 MS.gene033151:CDS
GAAGCTGCATACCCTTATCA+AGG 0.568411 8.2:+17666464 MS.gene033151:CDS
TGATGGAACCAAGTATTGGT+TGG 0.568906 8.2:+17666727 MS.gene033151:CDS
CGGTTCATGTGGAACCGAGT+TGG 0.572572 8.2:+17666667 MS.gene033151:CDS
TTGGTTGGTTAAGAACTCAT+GGG 0.574582 8.2:+17666742 MS.gene033151:CDS
AGGGGAGTTGATGCCGCTGA+AGG 0.575466 8.2:+17666803 MS.gene033151:CDS
TCTGTTGCAATTGATGCCAG+TGG 0.578268 8.2:+17666608 MS.gene033151:CDS
TAAGACCACCCTCACAACCT+TGG 0.579957 8.2:-17666394 None:intergenic
AAGTGCAATCCCGTCCGTTG+TGG 0.579982 8.2:+17666099 MS.gene033151:CDS
GGTGTCTTTACCGGTTCATG+TGG 0.583724 8.2:+17666656 MS.gene033151:CDS
TGTGGAACCGAGTTGGATCA+TGG 0.584259 8.2:+17666674 MS.gene033151:CDS
GCATCTAGAAATAAATTCAA+GGG 0.590276 8.2:+17666025 MS.gene033151:CDS
AACCGGTAATGGTAGCTGCA+TGG 0.596244 8.2:-17666523 None:intergenic
ATGCCTGCTCATTGTTGGCA+GGG 0.601537 8.2:-17666556 None:intergenic
AACTCATGGGGAACTGAGTG+GGG 0.603863 8.2:+17666755 MS.gene033151:CDS
ACCGCTGTAGGTTATGGTGT+CGG 0.606963 8.2:+17666701 MS.gene033151:CDS
GGTGTGGACCAAGGTTGTGA+GGG 0.614905 8.2:+17666386 MS.gene033151:CDS
TAAGGATCCTCAAGAAAGGG+AGG 0.633799 8.2:+17665880 MS.gene033151:CDS
AGGTGTGGACCAAGGTTGTG+AGG 0.640947 8.2:+17666385 MS.gene033151:CDS
CTATGAACTCCTCATTGGTG+AGG 0.645140 8.2:-17666003 None:intergenic
TGGTTGGTTAAGAACTCATG+GGG 0.647156 8.2:+17666743 MS.gene033151:CDS
AAGTCGACTCCATGTATGAG+AGG 0.647740 8.2:+17665822 MS.gene033151:CDS
AGAACTCATGGGGAACTGAG+TGG 0.653772 8.2:+17666753 MS.gene033151:CDS
ATTTGCAGACCTCACCAATG+AGG 0.664553 8.2:+17665994 MS.gene033151:CDS
AATGCCACAAAGTCCTTCAG+CGG 0.670519 8.2:-17666816 None:intergenic
TGATTGTGACACAAAAGGTG+TGG 0.676157 8.2:+17666370 MS.gene033151:CDS
GTGAAGAATCAAGGTCAATG+TGG 0.680408 8.2:+17666151 MS.gene033151:CDS
TTTCTTCCTCCAATCCACAA+CGG 0.681262 8.2:-17666113 None:intergenic
GGTGACACCATGATCCAACT+CGG 0.706899 8.2:-17666681 None:intergenic
ACCGACACCATAACCTACAG+CGG 0.712402 8.2:-17666702 None:intergenic
GACACAAAAGGTGTGGACCA+AGG 0.716503 8.2:+17666377 MS.gene033151:CDS
GGATACATTAGGATGCAAAG+GGG 0.764149 8.2:+17666785 MS.gene033151:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAAATTACAGTTAATTA+TGG - chr8.2:17666243-17666262 None:intergenic 15.0%
!! AAATTCATTATTCAAAATCG+TGG + chr8.2:17666431-17666450 MS.gene033151:CDS 20.0%
!!! AACTGTAATTTACTTTCTTT+TGG + chr8.2:17666248-17666267 MS.gene033151:intron 20.0%
!!! ACTATAGTATAACTGATTTT+TGG - chr8.2:17665738-17665757 None:intergenic 20.0%
! AATAACAAGCTATACAAGTT+AGG + chr8.2:17665962-17665981 MS.gene033151:CDS 25.0%
! AGCATCTAGAAATAAATTCA+AGG + chr8.2:17666024-17666043 MS.gene033151:CDS 25.0%
! GCATCTAGAAATAAATTCAA+GGG + chr8.2:17666025-17666044 MS.gene033151:CDS 25.0%
!! ATTGAAGTTTTCAACAATGA+TGG + chr8.2:17665938-17665957 MS.gene033151:CDS 25.0%
!! GACTTTCAATTTTACAAAAG+TGG + chr8.2:17666635-17666654 MS.gene033151:CDS 25.0%
!!! AATTTACTTTCTTTTGGTGT+AGG + chr8.2:17666254-17666273 MS.gene033151:intron 25.0%
TCAATATGGCAAAGTCTATA+AGG + chr8.2:17665862-17665881 MS.gene033151:CDS 30.0%
! ATTGACATTCATTTTCTGCT+TGG + chr8.2:17665763-17665782 MS.gene033151:CDS 30.0%
! GGAATTAATAAGTTGAGTAC+TGG + chr8.2:17666314-17666333 MS.gene033151:CDS 30.0%
! TTGACATTCATTTTCTGCTT+GGG + chr8.2:17665764-17665783 MS.gene033151:CDS 30.0%
AAATTGAAAGTCAGATCCAC+TGG - chr8.2:17666627-17666646 None:intergenic 35.0%
AAGGATACATTAGGATGCAA+AGG + chr8.2:17666783-17666802 MS.gene033151:CDS 35.0%
AGGATACATTAGGATGCAAA+GGG + chr8.2:17666784-17666803 MS.gene033151:CDS 35.0%
CAATTGCAACAGAAATAGGT+TGG - chr8.2:17666601-17666620 None:intergenic 35.0%
CTATAAGGATCCTCAAGAAA+GGG + chr8.2:17665877-17665896 MS.gene033151:CDS 35.0%
GCATCAATTGCAACAGAAAT+AGG - chr8.2:17666605-17666624 None:intergenic 35.0%
GTTCTTAACCAACCAATACT+TGG - chr8.2:17666738-17666757 None:intergenic 35.0%
TACAAAAGTGGTGTCTTTAC+CGG + chr8.2:17666647-17666666 MS.gene033151:CDS 35.0%
TCTATAAGGATCCTCAAGAA+AGG + chr8.2:17665876-17665895 MS.gene033151:CDS 35.0%
! ATTGGTTGGTTAAGAACTCA+TGG + chr8.2:17666741-17666760 MS.gene033151:CDS 35.0%
! CTTGTTGATTGTGACACAAA+AGG + chr8.2:17666365-17666384 MS.gene033151:CDS 35.0%
! GTAATGATGGAACCAAGTAT+TGG + chr8.2:17666723-17666742 MS.gene033151:CDS 35.0%
! TTGGTTGGTTAAGAACTCAT+GGG + chr8.2:17666742-17666761 MS.gene033151:CDS 35.0%
!! AGTATTTGTTTTCGCGATTG+AGG - chr8.2:17666062-17666081 None:intergenic 35.0%
!! TAAGTTGAGTACTGGAAAGT+TGG + chr8.2:17666322-17666341 MS.gene033151:CDS 35.0%
!! TTTTGGTGTAGGATGTTGTT+GGG + chr8.2:17666265-17666284 MS.gene033151:intron 35.0%
AGATGCTATGAACTCCTCAT+TGG - chr8.2:17666011-17666030 None:intergenic 40.0%
CATTGACCTTGATTCTTCAC+AGG - chr8.2:17666151-17666170 None:intergenic 40.0%
GACATCTTCATAACCGGTAA+TGG - chr8.2:17666537-17666556 None:intergenic 40.0%
GAGCAATGGATGAGTCAATA+TGG + chr8.2:17665848-17665867 MS.gene033151:CDS 40.0%
GGATACATTAGGATGCAAAG+GGG + chr8.2:17666785-17666804 MS.gene033151:CDS 40.0%
GTGAAGAATCAAGGTCAATG+TGG + chr8.2:17666151-17666170 MS.gene033151:CDS 40.0%
GTTACACCTGTGAAGAATCA+AGG + chr8.2:17666142-17666161 MS.gene033151:CDS 40.0%
TGATTGTGACACAAAAGGTG+TGG + chr8.2:17666370-17666389 MS.gene033151:CDS 40.0%
TTCCGTCAACACCTTGATAA+GGG - chr8.2:17666478-17666497 None:intergenic 40.0%
TTTCTTCCTCCAATCCACAA+CGG - chr8.2:17666116-17666135 None:intergenic 40.0%
! TGGTTGGTTAAGAACTCATG+GGG + chr8.2:17666743-17666762 MS.gene033151:CDS 40.0%
!! CTTTTGGTGTAGGATGTTGT+TGG + chr8.2:17666264-17666283 MS.gene033151:intron 40.0%
!! TACCCTTATCAAGGTGTTGA+CGG + chr8.2:17666473-17666492 MS.gene033151:CDS 40.0%
!! TGATGGAACCAAGTATTGGT+TGG + chr8.2:17666727-17666746 MS.gene033151:CDS 40.0%
AATGCCACAAAGTCCTTCAG+CGG - chr8.2:17666819-17666838 None:intergenic 45.0%
ATCCATGCAGCTACCATTAC+CGG + chr8.2:17666521-17666540 MS.gene033151:CDS 45.0%
ATTTGCAGACCTCACCAATG+AGG + chr8.2:17665994-17666013 MS.gene033151:CDS 45.0%
CTATGAACTCCTCATTGGTG+AGG - chr8.2:17666006-17666025 None:intergenic 45.0%
GAAGCTGCATACCCTTATCA+AGG + chr8.2:17666464-17666483 MS.gene033151:CDS 45.0%
GGGGTGAAGAAGGATACATT+AGG + chr8.2:17666774-17666793 MS.gene033151:CDS 45.0%
GTTCCGTCAACACCTTGATA+AGG - chr8.2:17666479-17666498 None:intergenic 45.0%
TAAGGATCCTCAAGAAAGGG+AGG + chr8.2:17665880-17665899 MS.gene033151:CDS 45.0%
TCTCATACATGGAGTCGACT+TGG - chr8.2:17665823-17665842 None:intergenic 45.0%
TCTGTTGCAATTGATGCCAG+TGG + chr8.2:17666608-17666627 MS.gene033151:CDS 45.0%
TTGCAATGCCTGCTCATTGT+TGG - chr8.2:17666564-17666583 None:intergenic 45.0%
! AAGTCGACTCCATGTATGAG+AGG + chr8.2:17665822-17665841 MS.gene033151:CDS 45.0%
!! GGTTATGGTGTCGGTAATGA+TGG + chr8.2:17666710-17666729 MS.gene033151:CDS 45.0%
!! GTTGTGGATTGGAGGAAGAA+AGG + chr8.2:17666115-17666134 MS.gene033151:CDS 45.0%
AACTCATGGGGAACTGAGTG+GGG + chr8.2:17666755-17666774 MS.gene033151:CDS 50.0%
AATGCCTGCTCATTGTTGGC+AGG - chr8.2:17666560-17666579 None:intergenic 50.0%
ACCGACACCATAACCTACAG+CGG - chr8.2:17666705-17666724 None:intergenic 50.0%
ACCGCTGTAGGTTATGGTGT+CGG + chr8.2:17666701-17666720 MS.gene033151:CDS 50.0%
AGAACTCATGGGGAACTGAG+TGG + chr8.2:17666753-17666772 MS.gene033151:CDS 50.0%
AGACGTTCCTCCCTTTCTTG+AGG - chr8.2:17665890-17665909 None:intergenic 50.0%
ATGCCTGCTCATTGTTGGCA+GGG - chr8.2:17666559-17666578 None:intergenic 50.0%
CAACTCGGTTCCACATGAAC+CGG - chr8.2:17666669-17666688 None:intergenic 50.0%
GAACTCATGGGGAACTGAGT+GGG + chr8.2:17666754-17666773 MS.gene033151:CDS 50.0%
GGCAGGGACATCTTCATAAC+CGG - chr8.2:17666543-17666562 None:intergenic 50.0%
GGTGACACCATGATCCAACT+CGG - chr8.2:17666684-17666703 None:intergenic 50.0%
TAAGACCACCCTCACAACCT+TGG - chr8.2:17666397-17666416 None:intergenic 50.0%
TTCCTCCAATCCACAACGGA+CGG - chr8.2:17666112-17666131 None:intergenic 50.0%
TTGCTCGTGCCTCTCATACA+TGG - chr8.2:17665834-17665853 None:intergenic 50.0%
! AACCGGTAATGGTAGCTGCA+TGG - chr8.2:17666526-17666545 None:intergenic 50.0%
! AGGTTGTGAGGGTGGTCTTA+TGG + chr8.2:17666397-17666416 MS.gene033151:CDS 50.0%
! GACACAAAAGGTGTGGACCA+AGG + chr8.2:17666377-17666396 MS.gene033151:CDS 50.0%
! GGTAATGGTAGCTGCATGGA+TGG - chr8.2:17666522-17666541 None:intergenic 50.0%
! TGTATGAGAGGCACGAGCAA+TGG + chr8.2:17665834-17665853 MS.gene033151:CDS 50.0%
! TGTGGAACCGAGTTGGATCA+TGG + chr8.2:17666674-17666693 MS.gene033151:CDS 50.0%
!! GGTGTCTTTACCGGTTCATG+TGG + chr8.2:17666656-17666675 MS.gene033151:CDS 50.0%
AAGTGCAATCCCGTCCGTTG+TGG + chr8.2:17666099-17666118 MS.gene033151:CDS 55.0%
AGGTGTGGACCAAGGTTGTG+AGG + chr8.2:17666385-17666404 MS.gene033151:CDS 55.0%
CAATCCCGTCCGTTGTGGAT+TGG + chr8.2:17666104-17666123 MS.gene033151:CDS 55.0%
CGGTTCATGTGGAACCGAGT+TGG + chr8.2:17666667-17666686 MS.gene033151:CDS 55.0%
GATGCCGCTGAAGGACTTTG+TGG + chr8.2:17666812-17666831 MS.gene033151:CDS 55.0%
GGAACTGAGTGGGGTGAAGA+AGG + chr8.2:17666764-17666783 MS.gene033151:CDS 55.0%
GGTGTGGACCAAGGTTGTGA+GGG + chr8.2:17666386-17666405 MS.gene033151:CDS 55.0%
TCAGCTGTTGCAGCGACTGA+AGG + chr8.2:17666293-17666312 MS.gene033151:CDS 55.0%
TCCTCCAATCCACAACGGAC+GGG - chr8.2:17666111-17666130 None:intergenic 55.0%
TGTCCCTGCCAACAATGAGC+AGG + chr8.2:17666553-17666572 MS.gene033151:CDS 55.0%
! GGTGTCACCGCTGTAGGTTA+TGG + chr8.2:17666695-17666714 MS.gene033151:CDS 55.0%
!! GATCATGGTGTCACCGCTGT+AGG + chr8.2:17666689-17666708 MS.gene033151:CDS 55.0%
GTGGACCAAGGTTGTGAGGG+TGG + chr8.2:17666389-17666408 MS.gene033151:CDS 60.0%
!! AGGGGAGTTGATGCCGCTGA+AGG + chr8.2:17666803-17666822 MS.gene033151:CDS 60.0%
!! TCCCGTCCGTTGTGGATTGG+AGG + chr8.2:17666107-17666126 MS.gene033151:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 17665728 17666868 17665728 ID=MS.gene033151
chr8.2 mRNA 17665728 17666868 17665728 ID=MS.gene033151.t1;Parent=MS.gene033151
chr8.2 exon 17665728 17666172 17665728 ID=MS.gene033151.t1.exon1;Parent=MS.gene033151.t1
chr8.2 CDS 17665728 17666172 17665728 ID=cds.MS.gene033151.t1;Parent=MS.gene033151.t1
chr8.2 exon 17666276 17666868 17666276 ID=MS.gene033151.t1.exon2;Parent=MS.gene033151.t1
chr8.2 CDS 17666276 17666868 17666276 ID=cds.MS.gene033151.t1;Parent=MS.gene033151.t1
Gene Sequence

>MS.gene033151

ATGGCTTCCAAAAATCAGTTATACTATAGTATTACATTGACATTCATTTTCTGCTTGGGATTGTGTGCTATTCAAGTCACTTCTCGCTCTCTCCAAGTCGACTCCATGTATGAGAGGCACGAGCAATGGATGAGTCAATATGGCAAAGTCTATAAGGATCCTCAAGAAAGGGAGGAACGTCTCAAGATATTCACAGCAAATGTGAATTACATTGAAGTTTTCAACAATGATGGCAATAACAAGCTATACAAGTTAGGCATTAATCAATTTGCAGACCTCACCAATGAGGAGTTCATAGCATCTAGAAATAAATTCAAGGGTCATATGTGCTCCTCAATCGCGAAAACAAATACTTTTAAGTATGAAAATGTAAGTGCAATCCCGTCCGTTGTGGATTGGAGGAAGAAAGGAGCAGTTACACCTGTGAAGAATCAAGGTCAATGTGGTAAGTGTTAATCTAATAAGTAATGTACTCAATTCTATATGTGATAAAAAAATTAATTGTCATCTAACCATAATTAACTGTAATTTACTTTCTTTTGGTGTAGGATGTTGTTGGGCATTTTCAGCTGTTGCAGCGACTGAAGGAATTAATAAGTTGAGTACTGGAAAGTTGGTCTCTTTATCAGAACAAGAACTTGTTGATTGTGACACAAAAGGTGTGGACCAAGGTTGTGAGGGTGGTCTTATGGACGATGCTTTCAAATTCATTATTCAAAATCGTGGACTTAGTACTGAAGCTGCATACCCTTATCAAGGTGTTGACGGAACATGCAATGCAAACAAAGCGTCCATCCATGCAGCTACCATTACCGGTTATGAAGATGTCCCTGCCAACAATGAGCAGGCATTGCAAAAAGCTGTCGCAAACCAACCTATTTCTGTTGCAATTGATGCCAGTGGATCTGACTTTCAATTTTACAAAAGTGGTGTCTTTACCGGTTCATGTGGAACCGAGTTGGATCATGGTGTCACCGCTGTAGGTTATGGTGTCGGTAATGATGGAACCAAGTATTGGTTGGTTAAGAACTCATGGGGAACTGAGTGGGGTGAAGAAGGATACATTAGGATGCAAAGGGGAGTTGATGCCGCTGAAGGACTTTGTGGCATTGCAATGCAAGCATCTTACCCTACTGCTTAA
Protein sequence

>MS.gene033151.t1

MASKNQLYYSITLTFIFCLGLCAIQVTSRSLQVDSMYERHEQWMSQYGKVYKDPQEREERLKIFTANVNYIEVFNNDGNNKLYKLGINQFADLTNEEFIASRNKFKGHMCSSIAKTNTFKYENVSAIPSVVDWRKKGAVTPVKNQGQCGCCWAFSAVAATEGINKLSTGKLVSLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNRGLSTEAAYPYQGVDGTCNANKASIHAATITGYEDVPANNEQALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVGNDGTKYWLVKNSWGTEWGEEGYIRMQRGVDAAEGLCGIAMQASYPTA