AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045501

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045501.t1 MTR_4g079770 91.304 345 28 2 1 343 1 345 0.0 663
MS.gene045501.t1 MTR_5g022560 87.500 344 42 1 1 343 1 344 0.0 640
MS.gene045501.t1 MTR_4g079470 91.667 324 26 1 21 343 22 345 0.0 630
MS.gene045501.t1 MTR_4g079800 91.049 324 28 1 21 343 22 345 0.0 627
MS.gene045501.t1 MTR_4g107930 86.087 345 46 2 1 343 1 345 0.0 623
MS.gene045501.t1 MTR_4g047610 87.791 344 40 2 1 343 1 343 0.0 616
MS.gene045501.t1 MTR_2g075830 76.453 344 77 3 1 343 1 341 0.0 538
MS.gene045501.t1 MTR_4g080700 64.198 324 103 7 25 343 25 340 1.16e-149 425
MS.gene045501.t1 MTR_4g080730 61.207 348 122 7 1 343 1 340 1.21e-149 425
MS.gene045501.t1 MTR_2g083930 54.896 337 138 5 12 341 13 342 4.56e-131 378
MS.gene045501.t1 MTR_4g104370 56.851 343 136 10 6 341 5 342 2.32e-130 377
MS.gene045501.t1 MTR_4g080360 53.571 336 150 5 12 343 9 342 5.92e-128 370
MS.gene045501.t1 MTR_3g075390 52.632 342 145 8 14 342 7 344 9.36e-126 365
MS.gene045501.t1 MTR_4g079440 55.161 310 132 4 33 341 40 343 3.83e-122 355
MS.gene045501.t1 MTR_3g116080 51.026 341 151 7 11 342 14 347 8.69e-120 349
MS.gene045501.t1 MTR_1g107550 56.169 308 127 5 39 341 50 354 2.01e-118 350
MS.gene045501.t1 MTR_4g094918 50.733 341 155 7 10 342 6 341 3.22e-118 346
MS.gene045501.t1 MTR_7g078600 56.329 316 123 8 31 341 31 336 9.08e-118 344
MS.gene045501.t1 MTR_2g090890 49.853 339 157 5 10 342 5 336 7.01e-116 339
MS.gene045501.t1 MTR_7g079230 51.212 330 149 7 16 341 13 334 3.79e-114 335
MS.gene045501.t1 MTR_3g102220 51.988 327 138 8 27 341 41 360 3.35e-112 334
MS.gene045501.t1 MTR_1g018840 53.035 313 130 6 39 341 55 360 3.65e-112 334
MS.gene045501.t1 MTR_1g018840 53.035 313 130 6 39 341 55 360 5.63e-112 334
MS.gene045501.t1 MTR_3g112430 50.804 311 139 5 40 342 37 341 1.74e-102 308
MS.gene045501.t1 MTR_2g015850 53.425 292 128 6 53 341 76 362 1.19e-99 298
MS.gene045501.t1 MTR_2g016180 45.376 346 167 11 11 342 18 355 5.17e-90 278
MS.gene045501.t1 MTR_2g016270 45.322 342 158 11 11 342 18 340 1.22e-88 274
MS.gene045501.t1 MTR_2g067900 44.479 317 154 11 38 340 15 323 1.03e-74 234
MS.gene045501.t1 MTR_2g067560 44.237 321 147 13 38 337 15 324 2.58e-71 238
MS.gene045501.t1 MTR_2g064475 40.286 350 151 16 38 342 15 351 4.59e-70 223
MS.gene045501.t1 MTR_4g125300 41.639 305 160 9 45 343 57 349 1.13e-69 221
MS.gene045501.t1 MTR_2g015920 38.941 321 176 11 33 342 47 358 2.23e-69 221
MS.gene045501.t1 MTR_2g066980 35.754 358 168 13 7 342 1 318 2.01e-65 209
MS.gene045501.t1 MTR_7g078630 44.056 286 119 5 28 302 695 950 8.31e-65 221
MS.gene045501.t1 MTR_4g065077 38.509 322 178 9 32 342 44 356 9.45e-65 209
MS.gene045501.t1 MTR_4g071060 36.740 362 187 13 9 339 3 353 5.97e-64 207
MS.gene045501.t1 MTR_1g023810 44.156 231 120 6 113 340 37 261 5.99e-63 201
MS.gene045501.t1 MTR_2g015930 39.564 321 167 12 37 342 50 358 1.36e-62 203
MS.gene045501.t1 MTR_1g023210 36.982 338 169 11 23 334 33 352 3.77e-61 200
MS.gene045501.t1 MTR_8g086470 37.500 320 168 9 32 342 60 356 9.75e-60 196
MS.gene045501.t1 MTR_1g094135 34.540 359 195 12 7 339 19 363 3.22e-54 182
MS.gene045501.t1 MTR_7g078580 64.286 98 34 1 244 341 4 100 1.34e-41 142
MS.gene045501.t1 MTR_4g072790 34.122 296 158 9 47 339 56 317 6.25e-41 146
MS.gene045501.t1 MTR_7g079130 70.000 90 27 0 252 341 7 96 1.28e-40 138
MS.gene045501.t1 MTR_4g072340 30.056 356 197 11 1 339 1 321 6.07e-40 144
MS.gene045501.t1 MTR_2g015840 46.497 157 80 3 7 160 1 156 6.76e-40 142
MS.gene045501.t1 MTR_2g015840 40.201 199 99 6 162 342 75 271 9.57e-37 134
MS.gene045501.t1 MTR_4g073660 33.333 300 159 9 47 339 55 320 8.84e-40 143
MS.gene045501.t1 MTR_1g025450 37.433 187 92 7 113 295 43 208 9.68e-33 128
MS.gene045501.t1 MTR_7g078310 44.286 140 68 3 82 218 115 247 3.66e-27 108
MS.gene045501.t1 MTR_2g016380 46.281 121 58 4 226 342 18 135 1.69e-26 105
MS.gene045501.t1 MTR_7g111060 28.634 227 130 7 131 334 113 330 1.17e-23 100
MS.gene045501.t1 MTR_3g029560 30.159 252 139 9 98 342 16 237 1.06e-22 95.5
MS.gene045501.t1 MTR_7g111050 26.235 324 191 13 52 342 29 337 2.13e-22 96.7
MS.gene045501.t1 MTR_7g079260 59.722 72 13 1 268 339 7 62 3.29e-22 90.1
MS.gene045501.t1 MTR_8g087510 41.221 131 70 5 166 294 23 148 6.22e-20 86.3
MS.gene045501.t1 MTR_2g047960 47.059 85 44 1 134 218 7 90 9.91e-18 77.8
MS.gene045501.t1 MTR_3g082370 26.442 208 133 5 129 321 4 206 1.61e-16 78.2
MS.gene045501.t1 MTR_7g111050 24.296 284 173 11 52 304 24 296 3.19e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045501.t1 AT5G45890 54.493 345 146 6 7 342 3 345 1.27e-134 387
MS.gene045501.t1 AT5G50260 53.333 345 136 7 14 341 5 341 5.22e-129 373
MS.gene045501.t1 AT3G48340 53.890 347 135 9 12 341 4 342 8.29e-124 360
MS.gene045501.t1 AT2G34080 50.877 342 156 6 10 343 8 345 2.43e-122 356
MS.gene045501.t1 AT4G35350 50.867 346 153 8 7 342 14 352 3.80e-118 345
MS.gene045501.t1 AT3G19390 50.904 332 158 5 13 342 17 345 1.81e-116 345
MS.gene045501.t1 AT3G49340 49.711 346 148 8 16 343 4 341 3.81e-115 337
MS.gene045501.t1 AT5G43060 53.067 326 138 7 24 341 34 352 8.13e-115 341
MS.gene045501.t1 AT2G27420 49.857 349 155 7 10 343 5 348 1.36e-114 336
MS.gene045501.t1 AT3G48350 53.943 317 136 7 32 342 31 343 1.09e-112 332
MS.gene045501.t1 AT1G29090 47.309 353 169 7 4 343 7 355 2.86e-112 330
MS.gene045501.t1 AT1G47128 52.427 309 134 7 39 341 50 351 4.22e-111 331
MS.gene045501.t1 AT1G06260 50.146 343 151 7 9 341 9 341 8.99e-111 326
MS.gene045501.t1 AT3G19400 50.489 307 147 5 39 342 44 348 9.22e-111 327
MS.gene045501.t1 AT4G36880 50.462 325 142 6 32 342 42 361 1.57e-110 327
MS.gene045501.t1 AT1G20850 50.633 316 143 6 33 342 45 353 6.76e-110 325
MS.gene045501.t1 AT1G29080 47.605 334 152 7 24 343 22 346 3.45e-107 317
MS.gene045501.t1 AT1G09850 49.677 310 152 4 33 341 26 332 2.69e-101 305
MS.gene045501.t1 AT4G23520 47.573 309 147 9 40 341 48 348 3.60e-99 297
MS.gene045501.t1 AT4G11310 46.302 311 149 7 40 341 50 351 9.93e-98 294
MS.gene045501.t1 AT4G11320 45.079 315 147 7 40 341 57 358 9.42e-97 291
MS.gene045501.t1 AT4G11320 45.079 315 147 7 40 341 57 358 9.42e-97 291
MS.gene045501.t1 AT1G29110 42.988 328 151 7 29 342 28 333 2.33e-88 269
MS.gene045501.t1 AT3G43960 42.771 332 180 8 16 341 18 345 8.56e-85 261
MS.gene045501.t1 AT4G35350 47.857 280 129 8 7 276 14 286 1.20e-83 255
MS.gene045501.t1 AT3G19400 48.548 241 120 4 39 276 44 283 9.17e-77 238
MS.gene045501.t1 AT5G60360 42.532 308 161 9 41 343 61 357 1.83e-75 236
MS.gene045501.t1 AT3G48350 50.598 251 114 7 32 276 31 277 1.79e-73 229
MS.gene045501.t1 AT5G60360 42.208 308 161 10 41 343 61 356 7.15e-73 230
MS.gene045501.t1 AT3G45310 41.479 311 160 11 41 343 61 357 3.87e-72 228
MS.gene045501.t1 AT5G60360 41.946 298 157 9 41 333 61 347 8.98e-71 224
MS.gene045501.t1 AT3G45310 41.158 311 160 12 41 343 61 356 1.26e-69 221
MS.gene045501.t1 AT2G21430 37.954 303 164 8 47 334 56 349 3.73e-61 200
MS.gene045501.t1 AT4G39090 38.141 312 161 11 47 339 59 357 1.21e-58 193
MS.gene045501.t1 AT3G54940 37.812 320 161 10 38 334 50 354 7.75e-58 191
MS.gene045501.t1 AT4G16190 37.299 311 165 9 48 339 64 363 1.69e-55 186
MS.gene045501.t1 AT3G54940 37.768 233 127 5 38 258 50 276 5.98e-42 147
MS.gene045501.t1 AT1G02305 29.956 227 127 7 131 334 116 333 3.16e-25 104
MS.gene045501.t1 AT4G01610 27.389 314 184 13 51 334 31 330 1.35e-22 97.4
MS.gene045501.t1 AT4G01610 27.070 314 185 13 51 334 31 330 2.10e-21 94.0
MS.gene045501.t1 AT1G02300 28.638 213 122 6 144 334 146 350 2.06e-20 91.7
MS.gene045501.t1 AT2G22160 38.710 93 54 2 53 144 8 98 3.44e-14 68.2

Find 86 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTGCTGCTACCATTAC+TGG 0.241381 4.2:-30381992 MS.gene045501:CDS
AATATGATATAATTGATTAT+TGG 0.245014 4.2:+30382772 None:intergenic
TAAGTTAAGTACTGGAAAAT+TGG 0.257813 4.2:-30382191 MS.gene045501:CDS
GCATCAATGGCTACAGAAAT+TGG 0.307524 4.2:+30381911 None:intergenic
ACAATGATGGAACCAAATAT+TGG 0.314081 4.2:-30381790 MS.gene045501:CDS
CTTGTTATTGCCAGCATTGT+TGG 0.332876 4.2:+30382562 None:intergenic
TCACCATGGCAAAGTGTATA+AGG 0.340501 4.2:-30382648 MS.gene045501:CDS
TGTTCCGTCCACACCTTGAT+AGG 0.347233 4.2:+30382036 None:intergenic
AATAACAAGTTATACAAATT+AGG 0.348584 4.2:-30382548 MS.gene045501:CDS
AAATTCATCATTCAAAATCA+TGG 0.364764 4.2:-30382082 MS.gene045501:CDS
TTGCAGTGCGTTCTCATTGT+TGG 0.372109 4.2:+30381952 None:intergenic
AGGTTGTGAGGGTGGTCTTA+TGG 0.376813 4.2:-30382116 MS.gene045501:CDS
GGTGTTACTGCTGTGGGATA+TGG 0.378598 4.2:-30381818 MS.gene045501:CDS
TCAATTATATCATATTTCAT+TGG 0.405472 4.2:-30382765 MS.gene045501:CDS
GGAACATGCAATGCTAATAA+AGG 0.418975 4.2:-30382019 MS.gene045501:CDS
ACTTTGTGGCATTGCAATGC+AGG 0.423561 4.2:-30381687 MS.gene045501:CDS
TGCCTTTATAGGATGTTGTT+GGG 0.430973 4.2:-30382248 MS.gene045501:intron
CACACCTTGATAGGGGTATT+CGG 0.435671 4.2:+30382045 None:intergenic
ATGCCTTTATAGGATGTTGT+TGG 0.435997 4.2:-30382249 MS.gene045501:intron
AAAACTCATGGGGAACCGAC+TGG 0.445030 4.2:-30381760 MS.gene045501:CDS
TACAAAAGTGGTGTCTTCAC+TGG 0.452446 4.2:-30381866 MS.gene045501:CDS
AGTGCGTTCTCATTGTTGGC+AGG 0.452809 4.2:+30381956 None:intergenic
GGGATTCATAAGTTAAGTAC+TGG 0.452855 4.2:-30382199 MS.gene045501:CDS
ACAATCAACAAGTTCTTGTT+CGG 0.454613 4.2:+30382159 None:intergenic
GGATGATATGAACTCCTCAT+TGG 0.466065 4.2:+30382502 None:intergenic
GTCGGATCCACTAGCATCAA+TGG 0.467753 4.2:+30381898 None:intergenic
TGCTCGTGTTTCTCATACAT+AGG 0.475196 4.2:+30382680 None:intergenic
TCAGCTATTGCGGCAACTGA+AGG 0.488495 4.2:-30382220 MS.gene045501:CDS
TTCCTCCAATCCATTGTGGA+TGG 0.490858 4.2:+30382404 None:intergenic
TGCTACCATTACTGGGTATG+AGG 0.491803 4.2:-30381984 MS.gene045501:CDS
CTCCTGCTGCTACCATTACT+GGG 0.496600 4.2:-30381991 MS.gene045501:CDS
ATATTTAAAAGTAGTTGTCC+TGG 0.500162 4.2:+30382442 None:intergenic
AAACTCATGGGGAACCGACT+GGG 0.502307 4.2:-30381759 MS.gene045501:CDS
ATGGGGAACCGACTGGGGTG+AGG 0.510047 4.2:-30381753 MS.gene045501:CDS
TTTCTTCCTCCAATCCATTG+TGG 0.510059 4.2:+30382400 None:intergenic
GTTCCGTCCACACCTTGATA+GGG 0.517808 4.2:+30382037 None:intergenic
ACAATGGATTGGAGGAAGAA+AGG 0.520772 4.2:-30382398 MS.gene045501:CDS
GGGGTGAGGAAGGATACATT+AGG 0.521721 4.2:-30381739 MS.gene045501:CDS
AGGATACATTAGGATGCAAA+GGG 0.522408 4.2:-30381729 MS.gene045501:CDS
CAGCTATTGCGGCAACTGAA+GGG 0.522776 4.2:-30382219 MS.gene045501:CDS
GGATATGGCATTAACAATGA+TGG 0.525852 4.2:-30381803 MS.gene045501:CDS
TCTGTAGCCATTGATGCTAG+TGG 0.529031 4.2:-30381905 MS.gene045501:CDS
TAATTGATTATTGGCAGCCA+TGG 0.531448 4.2:+30382781 None:intergenic
ATGTTTGACATTTAAGCCGT+AGG 0.532128 4.2:+30381656 None:intergenic
ATTGAAGCTTCCAACAATGC+TGG 0.532605 4.2:-30382572 MS.gene045501:CDS
CTTGTTGATTGTGACACAAA+AGG 0.533495 4.2:-30382148 MS.gene045501:CDS
GCTCGTGTTTCTCATACATA+GGG 0.536434 4.2:+30382681 None:intergenic
GGAACCGACTGGGGTGAGGA+AGG 0.537425 4.2:-30381749 MS.gene045501:CDS
TGTATGAGAAACACGAGCAA+TGG 0.547122 4.2:-30382676 MS.gene045501:CDS
TGTGGTACTGAGTTGGATCA+TGG 0.551365 4.2:-30381839 MS.gene045501:CDS
TTCCATCCACAATGGATTGG+AGG 0.551446 4.2:-30382406 MS.gene045501:CDS
GTGTTCCATCCACAATGGAT+TGG 0.552593 4.2:-30382409 MS.gene045501:CDS
TGATGGAACCAAATATTGGT+TGG 0.554328 4.2:-30381786 MS.gene045501:CDS
TACCCAGTAATGGTAGCAGC+AGG 0.558279 4.2:+30381989 None:intergenic
GTGCGTTCTCATTGTTGGCA+GGG 0.560091 4.2:+30381957 None:intergenic
AAGGATACATTAGGATGCAA+AGG 0.563165 4.2:-30381730 MS.gene045501:CDS
GGATCATGGTGTTACTGCTG+TGG 0.569092 4.2:-30381825 MS.gene045501:CDS
GATGCTGCAGAAGGACTTTG+TGG 0.573462 4.2:-30381701 MS.gene045501:CDS
AATGCAGGCATCTTATCCTA+CGG 0.576356 4.2:-30381672 MS.gene045501:CDS
TACCCCTATCAAGGTGTGGA+CGG 0.577316 4.2:-30382040 MS.gene045501:CDS
AACTCATGGGGAACCGACTG+GGG 0.580555 4.2:-30381758 MS.gene045501:CDS
TGGTTCATGTGGTACTGAGT+TGG 0.586183 4.2:-30381846 MS.gene045501:CDS
GATCATGGTGTTACTGCTGT+GGG 0.587872 4.2:-30381824 MS.gene045501:CDS
GGTGTAGACCAAGGTTGTGA+GGG 0.591635 4.2:-30382127 MS.gene045501:CDS
TAAGACCACCCTCACAACCT+TGG 0.592405 4.2:+30382119 None:intergenic
AGGTGTAGACCAAGGTTGTG+AGG 0.594253 4.2:-30382128 MS.gene045501:CDS
GTAGACCAAGGTTGTGAGGG+TGG 0.595756 4.2:-30382124 MS.gene045501:CDS
TTCCGTCCACACCTTGATAG+GGG 0.599701 4.2:+30382038 None:intergenic
GAGGCCGAATACCCCTATCA+AGG 0.601939 4.2:-30382049 MS.gene045501:CDS
GACATCCTCATACCCAGTAA+TGG 0.602674 4.2:+30381979 None:intergenic
GATCCTTATACACTTTGCCA+TGG 0.603597 4.2:+30382645 None:intergenic
ACATGTGCTCTTCAATCACC+AGG 0.611193 4.2:-30382460 MS.gene045501:CDS
TGAGAAACACGAGCAATGGA+TGG 0.613416 4.2:-30382672 MS.gene045501:CDS
GGTGTCTTCACTGGTTCATG+TGG 0.623688 4.2:-30381857 MS.gene045501:CDS
AGGGGTGTAGATGCTGCAGA+AGG 0.625926 4.2:-30381710 MS.gene045501:CDS
GTCATCTTGTAGAGTGCGAG+AGG 0.637765 4.2:+30382703 None:intergenic
GTATCCTTCCTCACCCCAGT+CGG 0.644090 4.2:+30381745 None:intergenic
ATATGAACTCCTCATTGGTG+AGG 0.644741 4.2:+30382507 None:intergenic
TGCGAGTGTTCCATCCACAA+TGG 0.653708 4.2:-30382414 MS.gene045501:CDS
ATTTGCAGACCTCACCAATG+AGG 0.664553 4.2:-30382516 MS.gene045501:CDS
CGAATACCCCTATCAAGGTG+TGG 0.692068 4.2:-30382044 MS.gene045501:CDS
GAGCAATGGATGGCTCACCA+TGG 0.701771 4.2:-30382662 MS.gene045501:CDS
GACACAAAAGGTGTAGACCA+AGG 0.707755 4.2:-30382136 MS.gene045501:CDS
AAATCATGGAATCAGTACTG+AGG 0.718091 4.2:-30382068 MS.gene045501:CDS
GGATTGGAGGAAGAAAGGAG+CGG 0.765865 4.2:-30382393 MS.gene045501:CDS
GGATACATTAGGATGCAAAG+GGG 0.768557 4.2:-30381728 MS.gene045501:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGATATAATTGATTAT+TGG + chr4.2:30381677-30381696 None:intergenic 10.0%
!! AATAACAAGTTATACAAATT+AGG - chr4.2:30381898-30381917 MS.gene045501:CDS 15.0%
!! GAATTTCTTATAGATATATA+TGG - chr4.2:30382135-30382154 MS.gene045501:CDS 15.0%
!! TCAATTATATCATATTTCAT+TGG - chr4.2:30381681-30381700 MS.gene045501:CDS 15.0%
!!! AAAGGCATATTTAAAATAAT+TGG + chr4.2:30382185-30382204 None:intergenic 15.0%
!!! TATTTTAAATATGCCTTTAT+AGG - chr4.2:30382187-30382206 MS.gene045501:CDS 15.0%
!! AAATTCATCATTCAAAATCA+TGG - chr4.2:30382364-30382383 MS.gene045501:CDS 20.0%
! ATATTTAAAAGTAGTTGTCC+TGG + chr4.2:30382007-30382026 None:intergenic 25.0%
! ATCATCCAAAAATAGATTCA+AGG - chr4.2:30381960-30381979 MS.gene045501:CDS 25.0%
! TCATCCAAAAATAGATTCAA+GGG - chr4.2:30381961-30381980 MS.gene045501:CDS 25.0%
!! ACTTTTGTAAAACTGAAAGT+CGG + chr4.2:30382569-30382588 None:intergenic 25.0%
!! GTTTTTAACCAACCAATATT+TGG + chr4.2:30382671-30382690 None:intergenic 25.0%
!!! TAAGTTAAGTACTGGAAAAT+TGG - chr4.2:30382255-30382274 MS.gene045501:intron 25.0%
ACAATCAACAAGTTCTTGTT+CGG + chr4.2:30382290-30382309 None:intergenic 30.0%
CATCCAAAAATAGATTCAAG+GGG - chr4.2:30381962-30381981 MS.gene045501:CDS 30.0%
! ACAATGATGGAACCAAATAT+TGG - chr4.2:30382656-30382675 MS.gene045501:CDS 30.0%
! ACATTGACCTTGATTTTTCA+CGG + chr4.2:30382085-30382104 None:intergenic 30.0%
! ATTGGTTGGTTAAAAACTCA+TGG - chr4.2:30382674-30382693 MS.gene045501:CDS 30.0%
! GACTTTCAGTTTTACAAAAG+TGG - chr4.2:30382568-30382587 MS.gene045501:CDS 30.0%
! TTGGTTGGTTAAAAACTCAT+GGG - chr4.2:30382675-30382694 MS.gene045501:CDS 30.0%
AAATCATGGAATCAGTACTG+AGG - chr4.2:30382378-30382397 MS.gene045501:CDS 35.0%
AAGGATACATTAGGATGCAA+AGG - chr4.2:30382716-30382735 MS.gene045501:CDS 35.0%
AGGATACATTAGGATGCAAA+GGG - chr4.2:30382717-30382736 MS.gene045501:CDS 35.0%
ATGCCTTTATAGGATGTTGT+TGG - chr4.2:30382197-30382216 MS.gene045501:CDS 35.0%
GGAACATGCAATGCTAATAA+AGG - chr4.2:30382427-30382446 MS.gene045501:CDS 35.0%
GGATATGGCATTAACAATGA+TGG - chr4.2:30382643-30382662 MS.gene045501:CDS 35.0%
GGGATTCATAAGTTAAGTAC+TGG - chr4.2:30382247-30382266 MS.gene045501:intron 35.0%
GTGAAAAATCAAGGTCAATG+TGG - chr4.2:30382084-30382103 MS.gene045501:CDS 35.0%
TGATGGAACCAAATATTGGT+TGG - chr4.2:30382660-30382679 MS.gene045501:CDS 35.0%
TGCCTTTATAGGATGTTGTT+GGG - chr4.2:30382198-30382217 MS.gene045501:CDS 35.0%
! CATTGACCTTGATTTTTCAC+GGG + chr4.2:30382084-30382103 None:intergenic 35.0%
! CTTGTTGATTGTGACACAAA+AGG - chr4.2:30382298-30382317 MS.gene045501:intron 35.0%
! TGGTTGGTTAAAAACTCATG+GGG - chr4.2:30382676-30382695 MS.gene045501:CDS 35.0%
!! ATTGGCATTGCTTTTATGCT+TGG - chr4.2:30381699-30381718 MS.gene045501:CDS 35.0%
!! TTGGCATTGCTTTTATGCTT+GGG - chr4.2:30381700-30381719 MS.gene045501:CDS 35.0%
AATGCAGGCATCTTATCCTA+CGG - chr4.2:30382774-30382793 MS.gene045501:CDS 40.0%
ATATGAACTCCTCATTGGTG+AGG + chr4.2:30381942-30381961 None:intergenic 40.0%
ATTGAAGCTTCCAACAATGC+TGG - chr4.2:30381874-30381893 MS.gene045501:CDS 40.0%
GATCCTTATACACTTTGCCA+TGG + chr4.2:30381804-30381823 None:intergenic 40.0%
GCATCAATGGCTACAGAAAT+TGG + chr4.2:30382538-30382557 None:intergenic 40.0%
GCTCGTGTTTCTCATACATA+GGG + chr4.2:30381768-30381787 None:intergenic 40.0%
GGATACATTAGGATGCAAAG+GGG - chr4.2:30382718-30382737 MS.gene045501:CDS 40.0%
GGATGATATGAACTCCTCAT+TGG + chr4.2:30381947-30381966 None:intergenic 40.0%
TACAAAAGTGGTGTCTTCAC+TGG - chr4.2:30382580-30382599 MS.gene045501:CDS 40.0%
TCACCATGGCAAAGTGTATA+AGG - chr4.2:30381798-30381817 MS.gene045501:CDS 40.0%
TGCTCGTGTTTCTCATACAT+AGG + chr4.2:30381769-30381788 None:intergenic 40.0%
TGTATGAGAAACACGAGCAA+TGG - chr4.2:30381770-30381789 MS.gene045501:CDS 40.0%
TTTCTTCCTCCAATCCATTG+TGG + chr4.2:30382049-30382068 None:intergenic 40.0%
! GCTTTTATGCTTGGGATTGT+GGG - chr4.2:30381708-30381727 MS.gene045501:CDS 40.0%
! GTGCCCCTTGAATCTATTTT+TGG + chr4.2:30381968-30381987 None:intergenic 40.0%
! TGCTTTTATGCTTGGGATTG+TGG - chr4.2:30381707-30381726 MS.gene045501:CDS 40.0%
!! ACAATGGATTGGAGGAAGAA+AGG - chr4.2:30382048-30382067 MS.gene045501:CDS 40.0%
!! CTTGTTATTGCCAGCATTGT+TGG + chr4.2:30381887-30381906 None:intergenic 40.0%
ACATGTGCTCTTCAATCACC+AGG - chr4.2:30381986-30382005 MS.gene045501:CDS 45.0%
ACTTTGTGGCATTGCAATGC+AGG - chr4.2:30382759-30382778 MS.gene045501:CDS 45.0%
ATTTGCAGACCTCACCAATG+AGG - chr4.2:30381930-30381949 MS.gene045501:CDS 45.0%
CGCCCAACAACATCCTATAA+AGG + chr4.2:30382203-30382222 None:intergenic 45.0%
GACATCCTCATACCCAGTAA+TGG + chr4.2:30382470-30382489 None:intergenic 45.0%
GTGACACCCGTGAAAAATCA+AGG - chr4.2:30382075-30382094 MS.gene045501:CDS 45.0%
GTGTTCCATCCACAATGGAT+TGG - chr4.2:30382037-30382056 MS.gene045501:CDS 45.0%
TCTGTAGCCATTGATGCTAG+TGG - chr4.2:30382541-30382560 MS.gene045501:CDS 45.0%
TGAGAAACACGAGCAATGGA+TGG - chr4.2:30381774-30381793 MS.gene045501:CDS 45.0%
TGCTACCATTACTGGGTATG+AGG - chr4.2:30382462-30382481 MS.gene045501:CDS 45.0%
TTCCTCCAATCCATTGTGGA+TGG + chr4.2:30382045-30382064 None:intergenic 45.0%
TTGCAGTGCGTTCTCATTGT+TGG + chr4.2:30382497-30382516 None:intergenic 45.0%
! GACACAAAAGGTGTAGACCA+AGG - chr4.2:30382310-30382329 MS.gene045501:intron 45.0%
! TGGTTCATGTGGTACTGAGT+TGG - chr4.2:30382600-30382619 MS.gene045501:CDS 45.0%
! TGTGGTACTGAGTTGGATCA+TGG - chr4.2:30382607-30382626 MS.gene045501:CDS 45.0%
! TTGGGCGTTTTCAGCTATTG+CGG - chr4.2:30382216-30382235 MS.gene045501:CDS 45.0%
!! CACACCTTGATAGGGGTATT+CGG + chr4.2:30382404-30382423 None:intergenic 45.0%
!! GATCATGGTGTTACTGCTGT+GGG - chr4.2:30382622-30382641 MS.gene045501:CDS 45.0%
!! TTCCATCCACAATGGATTGG+AGG - chr4.2:30382040-30382059 MS.gene045501:CDS 45.0%
AAAACTCATGGGGAACCGAC+TGG - chr4.2:30382686-30382705 MS.gene045501:CDS 50.0%
AAACTCATGGGGAACCGACT+GGG - chr4.2:30382687-30382706 MS.gene045501:CDS 50.0%
AGGTGTAGACCAAGGTTGTG+AGG - chr4.2:30382318-30382337 MS.gene045501:intron 50.0%
AGTGCGTTCTCATTGTTGGC+AGG + chr4.2:30382493-30382512 None:intergenic 50.0%
CAGCTATTGCGGCAACTGAA+GGG - chr4.2:30382227-30382246 MS.gene045501:CDS 50.0%
CGAATACCCCTATCAAGGTG+TGG - chr4.2:30382402-30382421 MS.gene045501:CDS 50.0%
CTCCTGCTGCTACCATTACT+GGG - chr4.2:30382455-30382474 MS.gene045501:CDS 50.0%
GAACGCACTGCAAAAAGCAG+TGG - chr4.2:30382504-30382523 MS.gene045501:CDS 50.0%
GATGCTGCAGAAGGACTTTG+TGG - chr4.2:30382745-30382764 MS.gene045501:CDS 50.0%
GGATTGGAGGAAGAAAGGAG+CGG - chr4.2:30382053-30382072 MS.gene045501:CDS 50.0%
GGGGTGAGGAAGGATACATT+AGG - chr4.2:30382707-30382726 MS.gene045501:CDS 50.0%
GGTGTAGACCAAGGTTGTGA+GGG - chr4.2:30382319-30382338 MS.gene045501:intron 50.0%
GTCATCTTGTAGAGTGCGAG+AGG + chr4.2:30381746-30381765 None:intergenic 50.0%
GTCGGATCCACTAGCATCAA+TGG + chr4.2:30382551-30382570 None:intergenic 50.0%
GTGCGTTCTCATTGTTGGCA+GGG + chr4.2:30382492-30382511 None:intergenic 50.0%
GTTCCGTCCACACCTTGATA+GGG + chr4.2:30382412-30382431 None:intergenic 50.0%
TAAGACCACCCTCACAACCT+TGG + chr4.2:30382330-30382349 None:intergenic 50.0%
TACCCAGTAATGGTAGCAGC+AGG + chr4.2:30382460-30382479 None:intergenic 50.0%
TACCCCTATCAAGGTGTGGA+CGG - chr4.2:30382406-30382425 MS.gene045501:CDS 50.0%
TCAGCTATTGCGGCAACTGA+AGG - chr4.2:30382226-30382245 MS.gene045501:CDS 50.0%
TGCGAGTGTTCCATCCACAA+TGG - chr4.2:30382032-30382051 MS.gene045501:CDS 50.0%
TGTTCCGTCCACACCTTGAT+AGG + chr4.2:30382413-30382432 None:intergenic 50.0%
TTCCGTCCACACCTTGATAG+GGG + chr4.2:30382411-30382430 None:intergenic 50.0%
! AGGTTGTGAGGGTGGTCTTA+TGG - chr4.2:30382330-30382349 MS.gene045501:intron 50.0%
!! GGATCATGGTGTTACTGCTG+TGG - chr4.2:30382621-30382640 MS.gene045501:CDS 50.0%
!! GGTGTCTTCACTGGTTCATG+TGG - chr4.2:30382589-30382608 MS.gene045501:CDS 50.0%
!! GGTGTTACTGCTGTGGGATA+TGG - chr4.2:30382628-30382647 MS.gene045501:CDS 50.0%
AACTCATGGGGAACCGACTG+GGG - chr4.2:30382688-30382707 MS.gene045501:CDS 55.0%
GAGCAATGGATGGCTCACCA+TGG - chr4.2:30381784-30381803 MS.gene045501:CDS 55.0%
GAGGCCGAATACCCCTATCA+AGG - chr4.2:30382397-30382416 MS.gene045501:CDS 55.0%
GCTCCTGCTGCTACCATTAC+TGG - chr4.2:30382454-30382473 MS.gene045501:CDS 55.0%
GTAGACCAAGGTTGTGAGGG+TGG - chr4.2:30382322-30382341 MS.gene045501:intron 55.0%
GTATCCTTCCTCACCCCAGT+CGG + chr4.2:30382704-30382723 None:intergenic 55.0%
! AGGGGTGTAGATGCTGCAGA+AGG - chr4.2:30382736-30382755 MS.gene045501:CDS 55.0%
ATGGGGAACCGACTGGGGTG+AGG - chr4.2:30382693-30382712 MS.gene045501:CDS 65.0%
GGAACCGACTGGGGTGAGGA+AGG - chr4.2:30382697-30382716 MS.gene045501:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 30381667 30382801 30381667 ID=MS.gene045501
chr4.2 mRNA 30381667 30382801 30381667 ID=MS.gene045501.t1;Parent=MS.gene045501
chr4.2 exon 30382363 30382801 30382363 ID=MS.gene045501.t1.exon1;Parent=MS.gene045501.t1
chr4.2 CDS 30382363 30382801 30382363 ID=cds.MS.gene045501.t1;Parent=MS.gene045501.t1
chr4.2 exon 30381667 30382259 30381667 ID=MS.gene045501.t1.exon2;Parent=MS.gene045501.t1
chr4.2 CDS 30381667 30382259 30381667 ID=cds.MS.gene045501.t1;Parent=MS.gene045501.t1
Gene Sequence

>MS.gene045501

ATGGCTGCCAATAATCAATTATATCATATTTCATTGGCATTGCTTTTATGCTTGGGATTGTGGGCAATTCAAGTCACCTCTCGCACTCTACAAGATGACCCTATGTATGAGAAACACGAGCAATGGATGGCTCACCATGGCAAAGTGTATAAGGATCTTCAAGAAAGAAAGAATCGTTTAAAGATATTCAAAGAAAATGTGAATTACATTGAAGCTTCCAACAATGCTGGCAATAACAAGTTATACAAATTAGGCATTAATCAATTTGCAGACCTCACCAATGAGGAGTTCATATCATCCAAAAATAGATTCAAGGGGCACATGTGCTCTTCAATCACCAGGACAACTACTTTTAAATATGAAAATGCGAGTGTTCCATCCACAATGGATTGGAGGAAGAAAGGAGCGGTGACACCCGTGAAAAATCAAGGTCAATGTGGTAAGTGTTTATCGAATAATTAATTCATTGAATTTCTTATAGATATATATGGTCAAGTTTGAATTGTCATCTGACTCCAATTATTTTAAATATGCCTTTATAGGATGTTGTTGGGCGTTTTCAGCTATTGCGGCAACTGAAGGGATTCATAAGTTAAGTACTGGAAAATTGGTGTCTTTATCCGAACAAGAACTTGTTGATTGTGACACAAAAGGTGTAGACCAAGGTTGTGAGGGTGGTCTTATGGATGATGCTTTCAAATTCATCATTCAAAATCATGGAATCAGTACTGAGGCCGAATACCCCTATCAAGGTGTGGACGGAACATGCAATGCTAATAAAGGTTCAGCTCCTGCTGCTACCATTACTGGGTATGAGGATGTCCCTGCCAACAATGAGAACGCACTGCAAAAAGCAGTGGCTAATCAACCAATTTCTGTAGCCATTGATGCTAGTGGATCCGACTTTCAGTTTTACAAAAGTGGTGTCTTCACTGGTTCATGTGGTACTGAGTTGGATCATGGTGTTACTGCTGTGGGATATGGCATTAACAATGATGGAACCAAATATTGGTTGGTTAAAAACTCATGGGGAACCGACTGGGGTGAGGAAGGATACATTAGGATGCAAAGGGGTGTAGATGCTGCAGAAGGACTTTGTGGCATTGCAATGCAGGCATCTTATCCTACGGCTTAA
Protein sequence

>MS.gene045501.t1

MAANNQLYHISLALLLCLGLWAIQVTSRTLQDDPMYEKHEQWMAHHGKVYKDLQERKNRLKIFKENVNYIEASNNAGNNKLYKLGINQFADLTNEEFISSKNRFKGHMCSSITRTTTFKYENASVPSTMDWRKKGAVTPVKNQGQCGCCWAFSAIAATEGIHKLSTGKLVSLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGISTEAEYPYQGVDGTCNANKGSAPAATITGYEDVPANNENALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGINNDGTKYWLVKNSWGTDWGEEGYIRMQRGVDAAEGLCGIAMQASYPTA