AlfalfaGEDB | MS.gene074519

M. sativa cultivar XinJiangDaYe / MS.gene074519

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074519.t1	XP_013451320.1	92.8	456	31	1	2	457	1	454	1.20E-65	260.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074519.t1	A0A072UHW8	92.8	456	31	1	2	457	1	454	8.7e-66	260.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene074519	0.848828	4.78E-60	-1.69E-46
MS.gene049350	MS.gene074519	0.862227	5.88E-64	-1.69E-46
MS.gene049711	MS.gene074519	0.843389	1.44E-58	-1.69E-46
MS.gene049807	MS.gene074519	0.830517	2.81E-55	-1.69E-46
MS.gene049821	MS.gene074519	0.832414	9.58E-56	-1.69E-46
MS.gene049824	MS.gene074519	0.810065	1.39E-50	-1.69E-46
MS.gene049825	MS.gene074519	0.806832	6.79E-50	-1.69E-46
MS.gene049850	MS.gene074519	0.847508	1.11E-59	-1.69E-46
MS.gene049887	MS.gene074519	0.825722	4.01E-54	-1.69E-46
MS.gene050807	MS.gene074519	0.824432	8.10E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074519.t1	MTR_6g018780	92.763	456	31	1	2	457	1	454	0.0	851
MS.gene074519.t1	MTR_7g082230	52.143	140	56	5	315	450	45	177	7.71e-31	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene074519.t1	AT5G38300	42.568	148	65	7	319	457	126	262	2.57e-16	79.3
MS.gene074519.t1	AT1G67035	48.039	102	34	5	340	435	107	195	2.39e-14	72.8

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Find 93 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGCTAAGTTTCAAGG+TGG	0.660328	6.1:-4791686	MS.gene074519:CDS
AAAGAGGTTAACTTTCATGG+TGG	0.633453	6.1:-4791893	MS.gene074519:CDS
AAAGAGGTTAGGTTTCAAGG+TGG	0.599875	6.1:-4791788	MS.gene074519:CDS
AACTCAACCAAATTCCTTTC+TGG	0.113204	6.1:+4792388	None:intergenic
AAGAAAACTGTTGGCGGCGG+CGG	0.447845	6.1:-4791446	MS.gene074519:CDS
AAGAAAGAGGTTAAGTTTGA+AGG	0.396584	6.1:-4792106	MS.gene074519:CDS
AAGAAGAAAACTGTTGGCGG+CGG	0.632313	6.1:-4791449	MS.gene074519:CDS
AAGAATAAGAAGAAAACTGT+TGG	0.563642	6.1:-4791455	MS.gene074519:CDS
AATAAGAAGAAAACTGTTGG+CGG	0.607019	6.1:-4791452	MS.gene074519:CDS
ACTCAACCAAATTCCTTTCT+GGG	0.386526	6.1:+4792389	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAGAGGTTAAGTTTGA+AGG	-	chr6.1:4791841-4791860	MS.gene074519:CDS	30.0%
AATAAGAAGAAAACTGTTGG+CGG	-	chr6.1:4792495-4792514	MS.gene074519:CDS	30.0%
ACTGGAACAAGAAGAAAATT+TGG	-	chr6.1:4792101-4792120	MS.gene074519:CDS	30.0%
GAAGTAAAGGTTCAAGAATT+GGG	+	chr6.1:4791318-4791337	None:intergenic	30.0%
GTTAAGTTTGAAGGTGATTT+GGG	-	chr6.1:4791850-4791869	MS.gene074519:CDS	30.0%
TGAAGTAAAGGTTCAAGAAT+TGG	+	chr6.1:4791319-4791338	None:intergenic	30.0%
TGGTTAAGGATCAATGAAAT+TGG	+	chr6.1:4791352-4791371	None:intergenic	30.0%
AAAAAGTTGTTGACCCAGAA+AGG	-	chr6.1:4791545-4791564	MS.gene074519:CDS	35.0%
AAAGAGGTTAACTTTCATGG+TGG	-	chr6.1:4792054-4792073	MS.gene074519:CDS	35.0%
AACTCAACCAAATTCCTTTC+TGG	+	chr6.1:4791562-4791581	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	4791298	4792671	4791298	ID=MS.gene074519
chr6.1	mRNA	4791298	4792671	4791298	ID=MS.gene074519.t1;Parent=MS.gene074519
chr6.1	exon	4791298	4792671	4791298	ID=MS.gene074519.t1.exon1;Parent=MS.gene074519.t1
chr6.1	CDS	4791298	4792671	4791298	ID=cds.MS.gene074519.t1;Parent=MS.gene074519.t1

Gene Sequence

>MS.gene074519

ATGATGTCAAAAACAAACCCAATTCTTGAACCTTTACTTCATGTCCTTGATCCAATTTCATTGATCCTTAACCAAAATTCAAATTCAAATTCAAACCAACCTTGTCCTCTAAGGCTTACTTCTTTAGAAGATAGTTTTGTTATGGAGAGAGGAAGGAATTATGATCGTTATGCTGAATTGAGGGAAAAGAGGTTGCAGTTAAGGTGTTTGATGAATGTTCAAGGTGAGAGTTTTGAGATTGAAAGTGAAAAAGTTGTTGACCCAGAAAGGAATTTGGTTGAGTTTGATGGTGATTTGGGTTATGGGAGAAATGGGTTGTTGAAAAAAGATGAATTTTTTGAGATTGAATCAGAGAAAGTTTTGGCCCCTTCAAGGAAAAATGATAACTTTGAAGGTGGATTTGGTTATGAGAGAAAAGGGTCATTGGAAAATGATGAGAGTTTTGAGATTGAATTTCAAAAACTTGTTTCTTGTGGGAGAAATGGGTCTTTGGAAAAAGAAGAATTTTTTGAGATGGAACCACCAAAATTTGCATCCAGAACTAAGAAAGAGGTTAAGTTTGAAGGTGATTTGGGTTATGGGAGAAAAGGGTCATTGGAAAAAGAAGAAGATTTTGATATGGAACTGCAAAAACTTGTAGCCTCAGCAAAGAAAAAAGTGAACTTTGAAGGTGGTTTTGCTTATGGGAGAAAAGGGTTGTTGGAACAAGATGAATATTTTGAGATGGAAGCACAAAAATTTGCATCCAAAACAAGGAAAGAGGTTAACTTTCATGGTGGATTTGGTTACGGGAGAAAAGGGTCACTGGAACAAGAAGAAAATTTGGTGATTGAACCACAGAAATTTGTAGCCTCAACAAGGAAAGAGGTTAGGTTTCAAGGTGGATTTTCTTATGGGAGAAAAGGTTCTATGGAACAAGAATATTTTGAGATTGAACCACAAAAACTTGCAACCAAAGCAAGAAAAGAGGCTAAGTTTCAAGGTGGATTGGCTTGTGGGAGAAAAGGTTCTTCTGTTGTTGGTCAATCTGTGCCTGATTTTTCTGCTGTATTGAGGAAAGAGAATCGGAAGCCATTGAATTATTTGCCTGCAGTGATGGAGATAATGACACCACCTTCCAAGAGTAGTTTTTCCAAGGATGATAATGGAGTGGTGTCAAATTCAAGAGGGAGTAAGTCAGAGAGTGCAGGGGAGAAGAATAAGAAGAAAACTGTTGGCGGCGGCGGCGTTTTGATGGGAAGGAAGAGTTATGCTTGCATTGATGAGCTAAGGAGTTTGTCTTCTGCTACTGCAACTGCTATCAATGGTGAAGGAAGAGGAGGAAGGAATAGTAGAGTTTTGAGGAAGTCAGTATCAGCACATAGACAGTTTTGA

Protein sequence

>MS.gene074519.t1

MMSKTNPILEPLLHVLDPISLILNQNSNSNSNQPCPLRLTSLEDSFVMERGRNYDRYAELREKRLQLRCLMNVQGESFEIESEKVVDPERNLVEFDGDLGYGRNGLLKKDEFFEIESEKVLAPSRKNDNFEGGFGYERKGSLENDESFEIEFQKLVSCGRNGSLEKEEFFEMEPPKFASRTKKEVKFEGDLGYGRKGSLEKEEDFDMELQKLVASAKKKVNFEGGFAYGRKGLLEQDEYFEMEAQKFASKTRKEVNFHGGFGYGRKGSLEQEENLVIEPQKFVASTRKEVRFQGGFSYGRKGSMEQEYFEIEPQKLATKARKEAKFQGGLACGRKGSSVVGQSVPDFSAVLRKENRKPLNYLPAVMEIMTPPSKSSFSKDDNGVVSNSRGSKSESAGEKNKKKTVGGGGVLMGRKSYACIDELRSLSSATATAINGEGRGGRNSRVLRKSVSAHRQF