Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62806.t1 | XP_013457674.1 | 96.8 | 280 | 9 | 0 | 1 | 280 | 1 | 280 | 3.90E-139 | 504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62806.t1 | Q0WUQ1 | 51.5 | 235 | 111 | 1 | 34 | 265 | 41 | 275 | 1.8e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62806.t1 | A0A072V0P4 | 96.8 | 280 | 9 | 0 | 1 | 280 | 1 | 280 | 2.8e-139 | 504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene62806 | 0.881815 | 1.75E-70 | -1.69E-46 |
| MS.gene049159 | MS.gene62806 | 0.802295 | 6.00E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene62806 | 0.872225 | 3.74E-67 | -1.69E-46 |
| MS.gene049368 | MS.gene62806 | 0.82559 | 4.31E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene62806 | 0.836938 | 6.98E-57 | -1.69E-46 |
| MS.gene049807 | MS.gene62806 | 0.824228 | 9.04E-54 | -1.69E-46 |
| MS.gene049821 | MS.gene62806 | 0.820339 | 7.23E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene62806 | 0.831259 | 1.85E-55 | -1.69E-46 |
| MS.gene049887 | MS.gene62806 | 0.823829 | 1.12E-53 | -1.69E-46 |
| MS.gene05045 | MS.gene62806 | 0.821677 | 3.55E-53 | -1.69E-46 |
| MS.gene050551 | MS.gene62806 | 0.813804 | 2.13E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene62806 | 0.82702 | 1.97E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene62806 | 0.822335 | 2.50E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene62806 | 0.843229 | 1.59E-58 | -1.69E-46 |
| MS.gene050901 | MS.gene62806 | 0.854477 | 1.20E-61 | -1.69E-46 |
| MS.gene051018 | MS.gene62806 | 0.814393 | 1.58E-51 | -1.69E-46 |
| MS.gene051029 | MS.gene62806 | 0.810396 | 1.18E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene62806 | 0.815062 | 1.12E-51 | -1.69E-46 |
| MS.gene051180 | MS.gene62806 | 0.806341 | 8.62E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene62806 | 0.8025 | 5.45E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene62806 | 0.810658 | 1.03E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene62806 | 0.834306 | 3.24E-56 | -1.69E-46 |
| MS.gene051328 | MS.gene62806 | 0.817478 | 3.23E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene62806 | 0.800008 | 1.76E-48 | -1.69E-46 |
| MS.gene05157 | MS.gene62806 | 0.838311 | 3.10E-57 | -1.69E-46 |
| MS.gene051700 | MS.gene62806 | 0.810236 | 1.27E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene62806 | 0.868679 | 5.46E-66 | -1.69E-46 |
| MS.gene051720 | MS.gene62806 | 0.874964 | 4.47E-68 | -1.69E-46 |
| MS.gene051744 | MS.gene62806 | 0.821684 | 3.54E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene62806 | 0.808868 | 2.51E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene62806 | 0.813805 | 2.12E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene62806 | 0.843247 | 1.58E-58 | -1.69E-46 |
| MS.gene052168 | MS.gene62806 | 0.804489 | 2.11E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene62806 | 0.828636 | 8.05E-55 | -1.69E-46 |
| MS.gene052335 | MS.gene62806 | 0.830675 | 2.57E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene62806 | 0.847866 | 8.82E-60 | -1.69E-46 |
| MS.gene052514 | MS.gene62806 | 0.808968 | 2.39E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene62806 | 0.874998 | 4.36E-68 | -1.69E-46 |
| MS.gene052609 | MS.gene62806 | 0.835126 | 2.01E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene62806 | 0.837482 | 5.07E-57 | -1.69E-46 |
| MS.gene052732 | MS.gene62806 | 0.82932 | 5.50E-55 | -1.69E-46 |
| MS.gene052773 | MS.gene62806 | 0.82349 | 1.35E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene62806 | 0.821663 | 3.58E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene62806 | 0.813085 | 3.06E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene62806 | 0.829435 | 5.16E-55 | -1.69E-46 |
| MS.gene053143 | MS.gene62806 | 0.815243 | 1.02E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene62806 | 0.863126 | 3.11E-64 | -1.69E-46 |
| MS.gene053164 | MS.gene62806 | 0.811408 | 7.11E-51 | -1.69E-46 |
| MS.gene053171 | MS.gene62806 | 0.820307 | 7.35E-53 | -1.69E-46 |
| MS.gene053174 | MS.gene62806 | 0.801299 | 9.61E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene62806 | 0.837032 | 6.60E-57 | -1.69E-46 |
| MS.gene05350 | MS.gene62806 | 0.800553 | 1.37E-48 | -1.69E-46 |
| MS.gene053581 | MS.gene62806 | 0.884149 | 2.45E-71 | -1.69E-46 |
| MS.gene053599 | MS.gene62806 | 0.802333 | 5.90E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene62806 | 0.803155 | 3.99E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene62806 | 0.803531 | 3.33E-49 | -1.69E-46 |
| MS.gene054550 | MS.gene62806 | 0.808295 | 3.32E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene62806 | 0.851934 | 6.42E-61 | -1.69E-46 |
| MS.gene05458 | MS.gene62806 | 0.850754 | 1.38E-60 | -1.69E-46 |
| MS.gene054651 | MS.gene62806 | 0.805727 | 1.16E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene62806 | 0.81068 | 1.02E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene62806 | 0.808047 | 3.75E-50 | -1.69E-46 |
| MS.gene055144 | MS.gene62806 | 0.838701 | 2.46E-57 | -1.69E-46 |
| MS.gene055311 | MS.gene62806 | 0.825592 | 4.31E-54 | -1.69E-46 |
| MS.gene055313 | MS.gene62806 | 0.841841 | 3.72E-58 | -1.69E-46 |
| MS.gene055314 | MS.gene62806 | 0.801689 | 8.00E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene62806 | 0.869957 | 2.10E-66 | -1.69E-46 |
| MS.gene055466 | MS.gene62806 | 0.865188 | 7.08E-65 | -1.69E-46 |
| MS.gene055468 | MS.gene62806 | 0.873397 | 1.52E-67 | -1.69E-46 |
| MS.gene055469 | MS.gene62806 | 0.86337 | 2.61E-64 | -1.69E-46 |
| MS.gene055512 | MS.gene62806 | 0.802108 | 6.56E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene62806 | 0.860189 | 2.46E-63 | -1.69E-46 |
| MS.gene055537 | MS.gene62806 | 0.849206 | 3.75E-60 | -1.69E-46 |
| MS.gene055580 | MS.gene62806 | -0.824443 | 8.05E-54 | -1.69E-46 |
| MS.gene055764 | MS.gene62806 | 0.810232 | 1.28E-50 | -1.69E-46 |
| MS.gene055890 | MS.gene62806 | 0.806946 | 6.43E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene62806 | 0.824867 | 6.39E-54 | -1.69E-46 |
| MS.gene055926 | MS.gene62806 | 0.834767 | 2.48E-56 | -1.69E-46 |
| MS.gene056005 | MS.gene62806 | 0.80397 | 2.70E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene62806 | -0.814737 | 1.32E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene62806 | 0.802907 | 4.49E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene62806 | 0.831013 | 2.12E-55 | -1.69E-46 |
| MS.gene056215 | MS.gene62806 | 0.818477 | 1.92E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene62806 | 0.881066 | 3.27E-70 | -1.69E-46 |
| MS.gene056390 | MS.gene62806 | 0.839035 | 2.02E-57 | -1.69E-46 |
| MS.gene056507 | MS.gene62806 | 0.81832 | 2.08E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene62806 | 0.801946 | 7.08E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene62806 | 0.807068 | 6.06E-50 | -1.69E-46 |
| MS.gene057294 | MS.gene62806 | 0.821569 | 3.77E-53 | -1.69E-46 |
| MS.gene057446 | MS.gene62806 | 0.803219 | 3.87E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene62806 | 0.847704 | 9.77E-60 | -1.69E-46 |
| MS.gene058087 | MS.gene62806 | 0.823925 | 1.07E-53 | -1.69E-46 |
| MS.gene058339 | MS.gene62806 | 0.818049 | 2.40E-52 | -1.69E-46 |
| MS.gene058360 | MS.gene62806 | 0.817677 | 2.91E-52 | -1.69E-46 |
| MS.gene05847 | MS.gene62806 | 0.832677 | 8.24E-56 | -1.69E-46 |
| MS.gene058625 | MS.gene62806 | 0.808114 | 3.63E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene62806 | 0.801183 | 1.02E-48 | -1.69E-46 |
| MS.gene058639 | MS.gene62806 | 0.805344 | 1.40E-49 | -1.69E-46 |
| MS.gene058647 | MS.gene62806 | 0.808068 | 3.71E-50 | -1.69E-46 |
| MS.gene058649 | MS.gene62806 | 0.809439 | 1.89E-50 | -1.69E-46 |
| MS.gene058668 | MS.gene62806 | 0.812404 | 4.31E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene62806 | 0.84129 | 5.20E-58 | -1.69E-46 |
| MS.gene058945 | MS.gene62806 | 0.818729 | 1.68E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene62806 | 0.823157 | 1.61E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene62806 | 0.839947 | 1.17E-57 | -1.69E-46 |
| MS.gene059227 | MS.gene62806 | 0.805232 | 1.47E-49 | -1.69E-46 |
| MS.gene059426 | MS.gene62806 | 0.800095 | 1.69E-48 | -1.69E-46 |
| MS.gene059570 | MS.gene62806 | 0.80035 | 1.50E-48 | -1.69E-46 |
| MS.gene059625 | MS.gene62806 | 0.81704 | 4.05E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene62806 | 0.836976 | 6.82E-57 | -1.69E-46 |
| MS.gene059842 | MS.gene62806 | 0.800371 | 1.49E-48 | -1.69E-46 |
| MS.gene059937 | MS.gene62806 | 0.804635 | 1.97E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene62806 | 0.831876 | 1.30E-55 | -1.69E-46 |
| MS.gene060519 | MS.gene62806 | 0.835473 | 1.64E-56 | -1.69E-46 |
| MS.gene060587 | MS.gene62806 | 0.836836 | 7.41E-57 | -1.69E-46 |
| MS.gene060637 | MS.gene62806 | 0.819265 | 1.27E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene62806 | 0.813858 | 2.07E-51 | -1.69E-46 |
| MS.gene060884 | MS.gene62806 | 0.813531 | 2.44E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene62806 | 0.838009 | 3.71E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene62806 | 0.844033 | 9.71E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62806.t1 | MTR_4g102740 | 96.786 | 280 | 9 | 0 | 1 | 280 | 1 | 280 | 0.0 | 543 |
| MS.gene62806.t1 | MTR_0086s0010 | 45.724 | 304 | 118 | 4 | 20 | 280 | 22 | 321 | 6.55e-79 | 243 |
| MS.gene62806.t1 | MTR_1g101440 | 47.902 | 286 | 114 | 5 | 28 | 280 | 18 | 301 | 5.06e-76 | 235 |
| MS.gene62806.t1 | MTR_2g018860 | 39.759 | 249 | 114 | 5 | 32 | 279 | 30 | 243 | 2.42e-53 | 174 |
| MS.gene62806.t1 | MTR_7g069610 | 44.554 | 202 | 111 | 1 | 32 | 232 | 19 | 220 | 1.68e-47 | 158 |
| MS.gene62806.t1 | MTR_4g017810 | 37.179 | 234 | 119 | 2 | 47 | 280 | 19 | 224 | 2.80e-40 | 140 |
| MS.gene62806.t1 | MTR_2g018860 | 39.109 | 202 | 88 | 4 | 79 | 279 | 34 | 201 | 2.15e-35 | 126 |
| MS.gene62806.t1 | MTR_6g022040 | 41.176 | 119 | 61 | 2 | 24 | 136 | 22 | 137 | 3.57e-21 | 87.8 |
| MS.gene62806.t1 | MTR_6g022020 | 43.810 | 105 | 57 | 1 | 32 | 136 | 38 | 140 | 3.81e-21 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62806.t1 | AT5G52060 | 46.545 | 275 | 119 | 3 | 34 | 280 | 41 | 315 | 1.95e-72 | 226 |
| MS.gene62806.t1 | AT5G62100 | 45.238 | 252 | 131 | 3 | 31 | 280 | 14 | 260 | 1.53e-66 | 209 |
| MS.gene62806.t1 | AT5G07220 | 44.615 | 260 | 132 | 4 | 32 | 280 | 21 | 279 | 3.89e-65 | 206 |
| MS.gene62806.t1 | AT5G62100 | 43.726 | 263 | 130 | 5 | 31 | 280 | 14 | 271 | 2.45e-63 | 201 |
| MS.gene62806.t1 | AT5G62100 | 51.087 | 184 | 89 | 1 | 31 | 214 | 14 | 196 | 1.40e-56 | 181 |
| MS.gene62806.t1 | AT5G62100 | 50.543 | 184 | 90 | 1 | 31 | 214 | 14 | 196 | 5.47e-56 | 179 |
| MS.gene62806.t1 | AT3G51780 | 35.985 | 264 | 124 | 5 | 31 | 279 | 9 | 242 | 8.95e-46 | 155 |
| MS.gene62806.t1 | AT5G62100 | 54.412 | 136 | 61 | 1 | 31 | 166 | 14 | 148 | 4.53e-44 | 147 |
| MS.gene62806.t1 | AT5G62100 | 54.412 | 136 | 61 | 1 | 31 | 166 | 14 | 148 | 4.53e-44 | 147 |
| MS.gene62806.t1 | AT5G14360 | 40.000 | 105 | 60 | 1 | 33 | 137 | 49 | 150 | 2.03e-20 | 86.3 |
| MS.gene62806.t1 | AT5G40630 | 39.815 | 108 | 62 | 2 | 26 | 132 | 50 | 155 | 1.24e-19 | 84.0 |
Find 41 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTATTGTGTACCTTTC+TGG | 0.064078 | 8.1:-21036960 | None:intergenic |
| ATTACATTGGATGAAATTTA+TGG | 0.207184 | 8.1:+21037165 | MS.gene62806:CDS |
| CTCTAAGGTTACTTCAATTA+AGG | 0.213411 | 8.1:-21036924 | None:intergenic |
| CTTAATTGAAGTAACCTTAG+AGG | 0.272826 | 8.1:+21036925 | MS.gene62806:CDS |
| CATGAGAACTGATATGAATT+TGG | 0.287339 | 8.1:-21036570 | None:intergenic |
| ATCAGTTCTCATGCAAGTTT+TGG | 0.294978 | 8.1:+21036580 | MS.gene62806:CDS |
| GGCAAGTTTGTCAACCTCTA+AGG | 0.304140 | 8.1:-21036939 | None:intergenic |
| GAGTAGAGAAAGAAGGATAT+TGG | 0.354055 | 8.1:+21036862 | MS.gene62806:CDS |
| ATCAAAGTCAAAGTGAAGTA+TGG | 0.369232 | 8.1:+21036535 | MS.gene62806:CDS |
| CTTCACTTTGACTTTGATGA+TGG | 0.373301 | 8.1:-21036530 | None:intergenic |
| AATTCCCATTCAGCTACATT+TGG | 0.373777 | 8.1:-21036448 | None:intergenic |
| TTAATCAAAAGTTTCCCATT+TGG | 0.385906 | 8.1:-21037498 | None:intergenic |
| CAATCCAAATGTAGCTGAAT+GGG | 0.407553 | 8.1:+21036444 | MS.gene62806:CDS |
| AATTTGGTAGGTTTCAGCTT+TGG | 0.444763 | 8.1:+21037065 | MS.gene62806:intron |
| TAACATAACAAAGGAGAGTA+AGG | 0.457931 | 8.1:+21037388 | MS.gene62806:CDS |
| TCAATCCAAATGTAGCTGAA+TGG | 0.461891 | 8.1:+21036443 | MS.gene62806:CDS |
| TTGGAGGGTAATGTTTCTAA+AGG | 0.464546 | 8.1:+21037084 | MS.gene62806:CDS |
| AAGAATTGCAAAGAAGGAAA+AGG | 0.466398 | 8.1:+21036892 | MS.gene62806:CDS |
| GAAATTGCAGAGAAAAGAAC+AGG | 0.476993 | 8.1:+21037200 | MS.gene62806:CDS |
| CAGTTGTAGTAACAACCAAA+TGG | 0.480586 | 8.1:+21037483 | MS.gene62806:CDS |
| TTGGTAGGTTTCAGCTTTGG+AGG | 0.481735 | 8.1:+21037068 | MS.gene62806:intron |
| GAAATTAAGAATTGCAAAGA+AGG | 0.485109 | 8.1:+21036886 | MS.gene62806:CDS |
| AGGTGAAGTTATTTCAGAGT+TGG | 0.494651 | 8.1:+21037104 | MS.gene62806:CDS |
| AGTTGTAGTAACAACCAAAT+GGG | 0.521225 | 8.1:+21037484 | MS.gene62806:CDS |
| GGTTGACAAACTTGCCAGAA+AGG | 0.524609 | 8.1:+21036946 | MS.gene62806:CDS |
| AACTGATATGAATTTGGTGA+TGG | 0.530668 | 8.1:-21036564 | None:intergenic |
| AAAATGTTGACAGAATCAAC+AGG | 0.539679 | 8.1:+21036722 | MS.gene62806:CDS |
| GATATTGAGAGAGTCAAAGA+TGG | 0.547900 | 8.1:+21036809 | MS.gene62806:CDS |
| ACATCGAGAGTAGAGAAAGA+AGG | 0.558063 | 8.1:+21036855 | MS.gene62806:CDS |
| ACTGACTCAGAATGTTTCAA+AGG | 0.560272 | 8.1:-21037464 | None:intergenic |
| GATGAGAGTATTGATTACAT+TGG | 0.562495 | 8.1:+21037152 | MS.gene62806:CDS |
| TTGGATGAAATTTATGGTGA+GGG | 0.566235 | 8.1:+21037171 | MS.gene62806:CDS |
| AAAACTTGCAATGCAGTCAA+AGG | 0.573016 | 8.1:+21036357 | None:intergenic |
| TGGTAGGTTTCAGCTTTGGA+GGG | 0.580586 | 8.1:+21037069 | MS.gene62806:intron |
| ATTTGGATTGACATGAACAT+TGG | 0.587267 | 8.1:-21036431 | None:intergenic |
| GCTGAATGGGAATTAAGACC+AGG | 0.631294 | 8.1:+21036457 | MS.gene62806:CDS |
| ACTGATATGAATTTGGTGAT+GGG | 0.633798 | 8.1:-21036563 | None:intergenic |
| ATTGGATGAAATTTATGGTG+AGG | 0.644553 | 8.1:+21037170 | MS.gene62806:CDS |
| TGCAGTCAAAGGTTACAAAG+AGG | 0.668299 | 8.1:+21036368 | MS.gene62806:CDS |
| GAATGGGAATTAAGACCAGG+TGG | 0.675489 | 8.1:+21036460 | MS.gene62806:CDS |
| AAATAACAATAACATAACAA+AGG | 0.682250 | 8.1:+21037379 | MS.gene62806:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATTAATGTGT+AGG | + | chr8.1:21037295-21037314 | MS.gene62806:intron | 10.0% |
| !! | AAATAACAATAACATAACAA+AGG | + | chr8.1:21037379-21037398 | MS.gene62806:CDS | 15.0% |
| !! | CTAAATAATTCAATGAAATT+TGG | + | chr8.1:21037049-21037068 | MS.gene62806:intron | 15.0% |
| !! | TGATTATTATTGGATTATTA+TGG | + | chr8.1:21036674-21036693 | MS.gene62806:intron | 15.0% |
| !! | TTAAAATATGCAAAGTATAA+AGG | - | chr8.1:21036630-21036649 | None:intergenic | 15.0% |
| !! | AAGTATAAAGGAAATTCTAA+AGG | - | chr8.1:21036618-21036637 | None:intergenic | 20.0% |
| !! | ATAAAATTAATGTGTAGGTT+AGG | + | chr8.1:21037300-21037319 | MS.gene62806:intron | 20.0% |
| !! | ATAATTCAATGAAATTTGGT+AGG | + | chr8.1:21037053-21037072 | MS.gene62806:intron | 20.0% |
| !! | ATTACATTGGATGAAATTTA+TGG | + | chr8.1:21037165-21037184 | MS.gene62806:CDS | 20.0% |
| !! | TTTCAACATTGTAAAAATAG+TGG | + | chr8.1:21037026-21037045 | MS.gene62806:intron | 20.0% |
| !!! | TGATTGATGATGATTATTAT+TGG | + | chr8.1:21036664-21036683 | MS.gene62806:intron | 20.0% |
| ! | GAAATTAAGAATTGCAAAGA+AGG | + | chr8.1:21036886-21036905 | MS.gene62806:CDS | 25.0% |
| ! | TTAATCAAAAGTTTCCCATT+TGG | - | chr8.1:21037501-21037520 | None:intergenic | 25.0% |
| !! | TTGGATTATTATGGTTTTTG+TGG | + | chr8.1:21036683-21036702 | MS.gene62806:intron | 25.0% |
| AAAATGTTGACAGAATCAAC+AGG | + | chr8.1:21036722-21036741 | MS.gene62806:CDS | 30.0% | |
| AAGAATTGCAAAGAAGGAAA+AGG | + | chr8.1:21036892-21036911 | MS.gene62806:CDS | 30.0% | |
| AGTTGTAGTAACAACCAAAT+GGG | + | chr8.1:21037484-21037503 | MS.gene62806:CDS | 30.0% | |
| ATCAAAGTCAAAGTGAAGTA+TGG | + | chr8.1:21036535-21036554 | MS.gene62806:CDS | 30.0% | |
| ATTGGATGAAATTTATGGTG+AGG | + | chr8.1:21037170-21037189 | MS.gene62806:CDS | 30.0% | |
| ATTTGGATTGACATGAACAT+TGG | - | chr8.1:21036434-21036453 | None:intergenic | 30.0% | |
| CAGTTATGAAAACAAAGAGT+TGG | - | chr8.1:21037229-21037248 | None:intergenic | 30.0% | |
| CATGAGAACTGATATGAATT+TGG | - | chr8.1:21036573-21036592 | None:intergenic | 30.0% | |
| CTTAATTGAAGTAACCTTAG+AGG | + | chr8.1:21036925-21036944 | MS.gene62806:CDS | 30.0% | |
| TAACATAACAAAGGAGAGTA+AGG | + | chr8.1:21037388-21037407 | MS.gene62806:CDS | 30.0% | |
| TTGGATGAAATTTATGGTGA+GGG | + | chr8.1:21037171-21037190 | MS.gene62806:CDS | 30.0% | |
| ! | AACGATCAACATGTTTTCAA+GGG | + | chr8.1:21036393-21036412 | MS.gene62806:CDS | 30.0% |
| ! | AACTGATATGAATTTGGTGA+TGG | - | chr8.1:21036567-21036586 | None:intergenic | 30.0% |
| ! | ACTGATATGAATTTGGTGAT+GGG | - | chr8.1:21036566-21036585 | None:intergenic | 30.0% |
| ! | ATTATGGTTTTTGTGGTGTA+GGG | + | chr8.1:21036690-21036709 | MS.gene62806:intron | 30.0% |
| ! | TATTATGGTTTTTGTGGTGT+AGG | + | chr8.1:21036689-21036708 | MS.gene62806:intron | 30.0% |
| !! | CTCTAAGGTTACTTCAATTA+AGG | - | chr8.1:21036927-21036946 | None:intergenic | 30.0% |
| !! | GATGAGAGTATTGATTACAT+TGG | + | chr8.1:21037152-21037171 | MS.gene62806:CDS | 30.0% |
| !!! | CAACTCTTTGTTTTCATAAC+TGG | + | chr8.1:21037227-21037246 | MS.gene62806:intron | 30.0% |
| AATTCCCATTCAGCTACATT+TGG | - | chr8.1:21036451-21036470 | None:intergenic | 35.0% | |
| AATTTGGTAGGTTTCAGCTT+TGG | + | chr8.1:21037065-21037084 | MS.gene62806:intron | 35.0% | |
| CAATCCAAATGTAGCTGAAT+GGG | + | chr8.1:21036444-21036463 | MS.gene62806:CDS | 35.0% | |
| CACATTATTGTGTACCTTTC+TGG | - | chr8.1:21036963-21036982 | None:intergenic | 35.0% | |
| CAGTTGTAGTAACAACCAAA+TGG | + | chr8.1:21037483-21037502 | MS.gene62806:CDS | 35.0% | |
| GAAATTGCAGAGAAAAGAAC+AGG | + | chr8.1:21037200-21037219 | MS.gene62806:CDS | 35.0% | |
| GAGTAGAGAAAGAAGGATAT+TGG | + | chr8.1:21036862-21036881 | MS.gene62806:CDS | 35.0% | |
| GATATTGAGAGAGTCAAAGA+TGG | + | chr8.1:21036809-21036828 | MS.gene62806:CDS | 35.0% | |
| TCAATCCAAATGTAGCTGAA+TGG | + | chr8.1:21036443-21036462 | MS.gene62806:CDS | 35.0% | |
| ! | ACTGACTCAGAATGTTTCAA+AGG | - | chr8.1:21037467-21037486 | None:intergenic | 35.0% |
| ! | AGGTGAAGTTATTTCAGAGT+TGG | + | chr8.1:21037104-21037123 | MS.gene62806:CDS | 35.0% |
| ! | ATCAGTTCTCATGCAAGTTT+TGG | + | chr8.1:21036580-21036599 | MS.gene62806:CDS | 35.0% |
| ! | CAACGATCAACATGTTTTCA+AGG | + | chr8.1:21036392-21036411 | MS.gene62806:CDS | 35.0% |
| ! | CTTCACTTTGACTTTGATGA+TGG | - | chr8.1:21036533-21036552 | None:intergenic | 35.0% |
| ! | TTATGGTTTTTGTGGTGTAG+GGG | + | chr8.1:21036691-21036710 | MS.gene62806:intron | 35.0% |
| ! | TTGGAGGGTAATGTTTCTAA+AGG | + | chr8.1:21037084-21037103 | MS.gene62806:CDS | 35.0% |
| ACATCGAGAGTAGAGAAAGA+AGG | + | chr8.1:21036855-21036874 | MS.gene62806:CDS | 40.0% | |
| TGCAGTCAAAGGTTACAAAG+AGG | + | chr8.1:21036368-21036387 | MS.gene62806:CDS | 40.0% | |
| ! | TTTTGTACTAGCATTCCACC+TGG | - | chr8.1:21036478-21036497 | None:intergenic | 40.0% |
| GAATGGGAATTAAGACCAGG+TGG | + | chr8.1:21036460-21036479 | MS.gene62806:CDS | 45.0% | |
| GCTGAATGGGAATTAAGACC+AGG | + | chr8.1:21036457-21036476 | MS.gene62806:CDS | 45.0% | |
| GGCAAGTTTGTCAACCTCTA+AGG | - | chr8.1:21036942-21036961 | None:intergenic | 45.0% | |
| GGTTGACAAACTTGCCAGAA+AGG | + | chr8.1:21036946-21036965 | MS.gene62806:CDS | 45.0% | |
| ! | TTGGTAGGTTTCAGCTTTGG+AGG | + | chr8.1:21037068-21037087 | MS.gene62806:intron | 45.0% |
| !! | TGGTAGGTTTCAGCTTTGGA+GGG | + | chr8.1:21037069-21037088 | MS.gene62806:intron | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 21036367 | 21037520 | 21036367 | ID=MS.gene62806 |
| chr8.1 | mRNA | 21036367 | 21037520 | 21036367 | ID=MS.gene62806.t1;Parent=MS.gene62806 |
| chr8.1 | exon | 21036367 | 21036601 | 21036367 | ID=MS.gene62806.t1.exon1;Parent=MS.gene62806.t1 |
| chr8.1 | CDS | 21036367 | 21036601 | 21036367 | ID=cds.MS.gene62806.t1;Parent=MS.gene62806.t1 |
| chr8.1 | exon | 21036711 | 21036967 | 21036711 | ID=MS.gene62806.t1.exon2;Parent=MS.gene62806.t1 |
| chr8.1 | CDS | 21036711 | 21036967 | 21036711 | ID=cds.MS.gene62806.t1;Parent=MS.gene62806.t1 |
| chr8.1 | exon | 21037075 | 21037221 | 21037075 | ID=MS.gene62806.t1.exon3;Parent=MS.gene62806.t1 |
| chr8.1 | CDS | 21037075 | 21037221 | 21037075 | ID=cds.MS.gene62806.t1;Parent=MS.gene62806.t1 |
| chr8.1 | exon | 21037317 | 21037520 | 21037317 | ID=MS.gene62806.t1.exon4;Parent=MS.gene62806.t1 |
| chr8.1 | CDS | 21037317 | 21037520 | 21037317 | ID=cds.MS.gene62806.t1;Parent=MS.gene62806.t1 |
| Gene Sequence |
| Protein sequence |
