Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071441.t1 | RHN79104.1 | 90.9 | 187 | 17 | 0 | 30 | 216 | 757 | 943 | 1.40E-48 | 203 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071441.t1 | A0A396JPH0 | 90.9 | 187 | 17 | 0 | 30 | 216 | 757 | 943 | 1.0e-48 | 203.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene071441 | 0.841319 | 5.11E-58 | -1.69E-46 |
| MS.gene049343 | MS.gene071441 | 0.814684 | 1.36E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene071441 | 0.818763 | 1.65E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene071441 | 0.803392 | 3.56E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene071441 | 0.821481 | 3.95E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene071441 | 0.820027 | 8.52E-53 | -1.69E-46 |
| MS.gene050026 | MS.gene071441 | 0.824539 | 7.64E-54 | -1.69E-46 |
| MS.gene050156 | MS.gene071441 | 0.823336 | 1.46E-53 | -1.69E-46 |
| MS.gene050201 | MS.gene071441 | 0.818477 | 1.92E-52 | -1.69E-46 |
| MS.gene050355 | MS.gene071441 | 0.803701 | 3.07E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene071441 | 0.801997 | 6.91E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene071441 | 0.804328 | 2.28E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene071441 | 0.807657 | 4.54E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene071441 | 0.801026 | 1.09E-48 | -1.69E-46 |
| MS.gene050844 | MS.gene071441 | 0.808655 | 2.78E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene071441 | 0.844475 | 7.39E-59 | -1.69E-46 |
| MS.gene051265 | MS.gene071441 | 0.831664 | 1.47E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene071441 | 0.808777 | 2.62E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene071441 | 0.823438 | 1.38E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene071441 | 0.807674 | 4.50E-50 | -1.69E-46 |
| MS.gene051720 | MS.gene071441 | 0.80332 | 3.69E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene071441 | 0.842553 | 2.41E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene071441 | 0.824426 | 8.13E-54 | -1.69E-46 |
| MS.gene052190 | MS.gene071441 | 0.836186 | 1.08E-56 | -1.69E-46 |
| MS.gene052208 | MS.gene071441 | 0.80811 | 3.64E-50 | -1.69E-46 |
| MS.gene052447 | MS.gene071441 | 0.800549 | 1.37E-48 | -1.69E-46 |
| MS.gene052488 | MS.gene071441 | 0.814593 | 1.42E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene071441 | 0.840734 | 7.27E-58 | -1.69E-46 |
| MS.gene052582 | MS.gene071441 | 0.80958 | 1.76E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene071441 | 0.829328 | 5.48E-55 | -1.69E-46 |
| MS.gene052773 | MS.gene071441 | 0.821084 | 4.87E-53 | -1.69E-46 |
| MS.gene052829 | MS.gene071441 | 0.801934 | 7.12E-49 | -1.69E-46 |
| MS.gene052843 | MS.gene071441 | 0.808746 | 2.66E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene071441 | 0.811927 | 5.48E-51 | -1.69E-46 |
| MS.gene052926 | MS.gene071441 | 0.808506 | 3.00E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene071441 | -0.841598 | 4.31E-58 | -1.69E-46 |
| MS.gene053145 | MS.gene071441 | 0.818877 | 1.56E-52 | -1.69E-46 |
| MS.gene053221 | MS.gene071441 | 0.808104 | 3.65E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene071441 | 0.834657 | 2.64E-56 | -1.69E-46 |
| MS.gene053883 | MS.gene071441 | 0.829236 | 5.76E-55 | -1.69E-46 |
| MS.gene053900 | MS.gene071441 | 0.805417 | 1.35E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene071441 | 0.80986 | 1.54E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene071441 | 0.816386 | 5.68E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene071441 | 0.824703 | 6.99E-54 | -1.69E-46 |
| MS.gene054160 | MS.gene071441 | 0.808562 | 2.91E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene071441 | 0.816316 | 5.89E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene071441 | -0.816538 | 5.25E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene071441 | 0.822736 | 2.02E-53 | -1.69E-46 |
| MS.gene055227 | MS.gene071441 | 0.807923 | 3.99E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene071441 | 0.807055 | 6.09E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene071441 | 0.819217 | 1.30E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene071441 | 0.804056 | 2.59E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene071441 | 0.806689 | 7.28E-50 | -1.69E-46 |
| MS.gene055589 | MS.gene071441 | 0.813529 | 2.44E-51 | -1.69E-46 |
| MS.gene055694 | MS.gene071441 | 0.803729 | 3.03E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene071441 | 0.844984 | 5.39E-59 | -1.69E-46 |
| MS.gene055818 | MS.gene071441 | 0.862818 | 3.87E-64 | -1.69E-46 |
| MS.gene056050 | MS.gene071441 | 0.831027 | 2.11E-55 | -1.69E-46 |
| MS.gene056162 | MS.gene071441 | 0.815332 | 9.76E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene071441 | 0.810073 | 1.38E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene071441 | 0.869029 | 4.21E-66 | -1.69E-46 |
| MS.gene056373 | MS.gene071441 | 0.811371 | 7.24E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene071441 | 0.805064 | 1.60E-49 | -1.69E-46 |
| MS.gene057021 | MS.gene071441 | 0.82343 | 1.39E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene071441 | 0.811554 | 6.61E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene071441 | 0.818401 | 2.00E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene071441 | 0.812161 | 4.87E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene071441 | 0.805048 | 1.61E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene071441 | 0.831366 | 1.74E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene071441 | 0.852582 | 4.20E-61 | -1.69E-46 |
| MS.gene058829 | MS.gene071441 | 0.826876 | 2.13E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene071441 | 0.822693 | 2.07E-53 | -1.69E-46 |
| MS.gene059272 | MS.gene071441 | 0.822019 | 2.96E-53 | -1.69E-46 |
| MS.gene059382 | MS.gene071441 | 0.808255 | 3.39E-50 | -1.69E-46 |
| MS.gene059458 | MS.gene071441 | 0.81082 | 9.53E-51 | -1.69E-46 |
| MS.gene059459 | MS.gene071441 | 0.816302 | 5.93E-52 | -1.69E-46 |
| MS.gene059460 | MS.gene071441 | 0.812906 | 3.35E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene071441 | 0.813965 | 1.96E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene071441 | 0.826203 | 3.09E-54 | -1.69E-46 |
| MS.gene059625 | MS.gene071441 | 0.820072 | 8.32E-53 | -1.69E-46 |
| MS.gene060352 | MS.gene071441 | 0.803713 | 3.06E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene071441 | 0.839401 | 1.62E-57 | -1.69E-46 |
| MS.gene060572 | MS.gene071441 | 0.829762 | 4.29E-55 | -1.69E-46 |
| MS.gene060634 | MS.gene071441 | -0.801245 | 9.86E-49 | -1.69E-46 |
| MS.gene061266 | MS.gene071441 | 0.810716 | 1.00E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071441.t1 | MTR_7g091460 | 80.556 | 36 | 6 | 1 | 1 | 35 | 728 | 763 | 1.59e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTAGAGACACCTGTTTC+TGG | 0.228660 | 1.3:-36548923 | None:intergenic |
| AGAACTAAATGCGGAGTTTA+AGG | 0.252036 | 1.3:-36551012 | None:intergenic |
| GTTCCAGAGAGTAGCATTTC+AGG | 0.273762 | 1.3:+36551185 | MS.gene071441:CDS |
| AAACAGGTGTCTCTACTCTT+TGG | 0.322037 | 1.3:+36548927 | MS.gene071441:CDS |
| CAAAGCTTCTGCCTTTGTCT+TGG | 0.329529 | 1.3:-36550499 | None:intergenic |
| ACTCCTAGGCCATCTGTAAA+AGG | 0.329533 | 1.3:+36551056 | MS.gene071441:CDS |
| AACAGGTGTCTCTACTCTTT+GGG | 0.351499 | 1.3:+36548928 | MS.gene071441:CDS |
| CTCCTGATTCCGATAGCAAT+GGG | 0.368283 | 1.3:+36552001 | MS.gene071441:CDS |
| CTCTTTGTCTTGGTCCTCCA+TGG | 0.382592 | 1.3:-36550974 | None:intergenic |
| CAAGACAAAGGCAGAAGCTT+TGG | 0.390644 | 1.3:+36550500 | MS.gene071441:CDS |
| GCTTGAGAAAACAACGAGTA+TGG | 0.390812 | 1.3:+36550551 | MS.gene071441:CDS |
| AGAAACTTCTTCCACTTCCT+TGG | 0.413003 | 1.3:-36551980 | None:intergenic |
| TTCTTATTACTTCAGGTTCA+CGG | 0.422765 | 1.3:+36548891 | None:intergenic |
| CGGGAACTCATTCCAGAAAC+AGG | 0.435091 | 1.3:+36548911 | MS.gene071441:CDS |
| TGTCTAGGATTGATCTTAAA+CGG | 0.444135 | 1.3:+36552127 | MS.gene071441:CDS |
| CTGGCCACAGGAGAGGTATC+AGG | 0.449973 | 1.3:-36551152 | None:intergenic |
| AAAGCTTCCGCTCTTTGTCT+TGG | 0.456698 | 1.3:-36550984 | None:intergenic |
| GATCAATTAAAGACTACATC+AGG | 0.462111 | 1.3:+36552096 | MS.gene071441:CDS |
| ATCAAACGGGTCAAGTGGAG+GGG | 0.466560 | 1.3:+36550474 | MS.gene071441:CDS |
| CAGTCACAAGAGAGATTGAA+TGG | 0.470209 | 1.3:+36550945 | MS.gene071441:intron |
| TCTTATTACTTCAGGTTCAC+GGG | 0.476574 | 1.3:+36548892 | None:intergenic |
| TCAAACGGGTCAAGTGGAGG+GGG | 0.482923 | 1.3:+36550475 | MS.gene071441:CDS |
| GTGTCTCTACTCTTTGGGAT+TGG | 0.491928 | 1.3:+36548933 | MS.gene071441:CDS |
| GAAATGCTACTCTCTGGAAC+AGG | 0.494243 | 1.3:-36551182 | None:intergenic |
| TTACCTGAAATGCTACTCTC+TGG | 0.510871 | 1.3:-36551188 | None:intergenic |
| CAACAAAGAAAGTTACTCCT+AGG | 0.511920 | 1.3:+36551042 | MS.gene071441:CDS |
| CTCTGGAACAGGACTGTCAC+TGG | 0.517307 | 1.3:-36551171 | None:intergenic |
| AGCTACAGAAGCCAAGGAAG+TGG | 0.518580 | 1.3:+36551969 | MS.gene071441:CDS |
| GGAATCTGAACAAGAATATG+TGG | 0.523447 | 1.3:+36552029 | MS.gene071441:CDS |
| CTTTGGGATTGGCCATGCTG+TGG | 0.526752 | 1.3:+36548944 | MS.gene071441:CDS |
| AATCAAACGGGTCAAGTGGA+GGG | 0.527463 | 1.3:+36550473 | MS.gene071441:CDS |
| TGATGAAGCTACAGAAGCCA+AGG | 0.540644 | 1.3:+36551963 | MS.gene071441:CDS |
| TGAATGTCCTCTGACTACTT+TGG | 0.561085 | 1.3:-36552068 | None:intergenic |
| GAACAAGAATATGTGGAGGA+TGG | 0.562270 | 1.3:+36552036 | MS.gene071441:CDS |
| AAATCAAACGGGTCAAGTGG+AGG | 0.563964 | 1.3:+36550472 | MS.gene071441:CDS |
| AGATTGAATGGCTTAAACCA+TGG | 0.565932 | 1.3:+36550957 | MS.gene071441:CDS |
| TCTCCTGATTCCGATAGCAA+TGG | 0.567747 | 1.3:+36552000 | MS.gene071441:CDS |
| TGGGATTGGCCATGCTGTGG+AGG | 0.583414 | 1.3:+36548947 | MS.gene071441:CDS |
| ACAGGACTGTCACTGGCCAC+AGG | 0.587561 | 1.3:-36551164 | None:intergenic |
| GATTGATCTTAAACGGAGAG+AGG | 0.596333 | 1.3:+36552134 | MS.gene071441:CDS |
| AGGCCATCTGTAAAAGGTCA+AGG | 0.608414 | 1.3:+36551062 | MS.gene071441:CDS |
| CGTCAGTTCTTACTGCTGAG+AGG | 0.621045 | 1.3:+36551117 | MS.gene071441:CDS |
| CCTGATTCCGATAGCAATGG+GGG | 0.624831 | 1.3:+36552003 | MS.gene071441:CDS |
| ACTGTCACTGGCCACAGGAG+AGG | 0.635142 | 1.3:-36551159 | None:intergenic |
| TCCTGATTCCGATAGCAATG+GGG | 0.635451 | 1.3:+36552002 | MS.gene071441:CDS |
| TGGAGGACCAAGACAAAGAG+CGG | 0.641857 | 1.3:+36550977 | MS.gene071441:CDS |
| CAAACGGGTCAAGTGGAGGG+GGG | 0.658548 | 1.3:+36550476 | MS.gene071441:CDS |
| ATCACCTGATACCTCTCCTG+TGG | 0.671050 | 1.3:+36551148 | MS.gene071441:CDS |
| AGGACTGTACCTCCACAGCA+TGG | 0.675625 | 1.3:-36548956 | None:intergenic |
| ATAATGACCAAAGTAGTCAG+AGG | 0.681044 | 1.3:+36552061 | MS.gene071441:CDS |
| TGTTGATGAAGAACTAAATG+CGG | 0.703179 | 1.3:-36551021 | None:intergenic |
| ATCTGAACAAGAATATGTGG+AGG | 0.712418 | 1.3:+36552032 | MS.gene071441:CDS |
| TTGAATGGCTTAAACCATGG+AGG | 0.721883 | 1.3:+36550960 | MS.gene071441:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAACTTTAGAATATTATAA+AGG | - | chr1.3:36550229-36550248 | None:intergenic | 10.0% |
| !!! | TTTTTTTCATTTTGTTTTTT+TGG | + | chr1.3:36550868-36550887 | MS.gene071441:intron | 10.0% |
| !! | CAATTGTTTAATTATTTCAA+TGG | + | chr1.3:36551624-36551643 | MS.gene071441:intron | 15.0% |
| !! | TTCTAACAAAAAAAAATGAA+TGG | - | chr1.3:36549168-36549187 | None:intergenic | 15.0% |
| !!! | AAATAAAGGTGTTATATTAA+AGG | - | chr1.3:36549872-36549891 | None:intergenic | 15.0% |
| !!! | ATATCTTTAGAATATGTTTT+TGG | - | chr1.3:36549758-36549777 | None:intergenic | 15.0% |
| !!! | CATTTTTGTATATATTTGAA+GGG | - | chr1.3:36550172-36550191 | None:intergenic | 15.0% |
| !!! | TTTATTTAGCTTTGAATTTT+AGG | + | chr1.3:36550044-36550063 | MS.gene071441:intron | 15.0% |
| !! | AAAGCTAAATAAACAGAAAA+AGG | - | chr1.3:36550037-36550056 | None:intergenic | 20.0% |
| !! | AGAAAATAAATATTGGAAGA+TGG | - | chr1.3:36550303-36550322 | None:intergenic | 20.0% |
| !! | ATCTGAAAACATCAAAATTA+GGG | + | chr1.3:36549508-36549527 | MS.gene071441:intron | 20.0% |
| !! | GTAATAATCGAATAAACTAT+AGG | + | chr1.3:36551780-36551799 | MS.gene071441:intron | 20.0% |
| !! | TCGAGAAAGAAAATAAATAT+TGG | - | chr1.3:36550310-36550329 | None:intergenic | 20.0% |
| !! | TTTAAGAATATTATTGTTGC+TGG | + | chr1.3:36550671-36550690 | MS.gene071441:intron | 20.0% |
| !!! | AGATCTCAAAATATAAGTTT+TGG | - | chr1.3:36549264-36549283 | None:intergenic | 20.0% |
| !!! | GCATTTTTGTATATATTTGA+AGG | - | chr1.3:36550173-36550192 | None:intergenic | 20.0% |
| !!! | TTTCATTTTGTTTTTTTGGT+AGG | + | chr1.3:36550872-36550891 | MS.gene071441:intron | 20.0% |
| !!! | TTTTCCCAAAAATAAAAAAC+AGG | - | chr1.3:36548979-36548998 | None:intergenic | 20.0% |
| !!! | TTTTTGCAACAAATAGAATA+TGG | - | chr1.3:36551272-36551291 | None:intergenic | 20.0% |
| ! | AACTGAAATTCAGTTAGTTA+CGG | - | chr1.3:36549317-36549336 | None:intergenic | 25.0% |
| ! | AATTCTCTCATGCAATAAAA+TGG | + | chr1.3:36549715-36549734 | MS.gene071441:intron | 25.0% |
| ! | ATTCTCTCATGCAATAAAAT+GGG | + | chr1.3:36549716-36549735 | MS.gene071441:intron | 25.0% |
| ! | CCTAATTTACTTAGAGAATA+AGG | - | chr1.3:36551445-36551464 | None:intergenic | 25.0% |
| ! | CCTTATTCTCTAAGTAAATT+AGG | + | chr1.3:36551442-36551461 | MS.gene071441:intron | 25.0% |
| ! | GATCTGAAAACATCAAAATT+AGG | + | chr1.3:36549507-36549526 | MS.gene071441:intron | 25.0% |
| ! | TCAAATAAATTACATCAGAG+TGG | + | chr1.3:36551665-36551684 | MS.gene071441:intron | 25.0% |
| ! | TGATGTAATTTATTTGACCA+TGG | - | chr1.3:36551662-36551681 | None:intergenic | 25.0% |
| ! | TTAAGAATACAGCACATAAT+AGG | - | chr1.3:36550830-36550849 | None:intergenic | 25.0% |
| ! | TTATATAGAGTTAAGTAGCT+TGG | - | chr1.3:36551518-36551537 | None:intergenic | 25.0% |
| ! | TTCTTCTCTTCAAATTCAAA+AGG | - | chr1.3:36551753-36551772 | None:intergenic | 25.0% |
| !! | GATCATGTTTACTTCATTTT+TGG | - | chr1.3:36549913-36549932 | None:intergenic | 25.0% |
| !! | TTTGAAACAAAAGTTTGTGT+TGG | - | chr1.3:36549843-36549862 | None:intergenic | 25.0% |
| !!! | ACAGTCCTGTTTTTTATTTT+TGG | + | chr1.3:36548971-36548990 | MS.gene071441:intron | 25.0% |
| !!! | CAGTCCTGTTTTTTATTTTT+GGG | + | chr1.3:36548972-36548991 | MS.gene071441:intron | 25.0% |
| AAAAGATTTACACAGACTGT+TGG | - | chr1.3:36551333-36551352 | None:intergenic | 30.0% | |
| AGAAATGGTTGAATGAAAAG+AGG | + | chr1.3:36550796-36550815 | MS.gene071441:intron | 30.0% | |
| ATACAGCACATAATAGGATT+TGG | - | chr1.3:36550824-36550843 | None:intergenic | 30.0% | |
| ATATATTTGAAGGGCTATGA+AGG | - | chr1.3:36550163-36550182 | None:intergenic | 30.0% | |
| GATCAATCAATTGTTGGATT+CGG | + | chr1.3:36550767-36550786 | MS.gene071441:intron | 30.0% | |
| GATCAATTAAAGACTACATC+AGG | + | chr1.3:36552096-36552115 | MS.gene071441:CDS | 30.0% | |
| GCTAAATAAACAGAAAAAGG+AGG | - | chr1.3:36550034-36550053 | None:intergenic | 30.0% | |
| GGTTATTTAGTAACATTAGC+TGG | - | chr1.3:36549296-36549315 | None:intergenic | 30.0% | |
| TGATCCATTCACATACAAAA+AGG | - | chr1.3:36550615-36550634 | None:intergenic | 30.0% | |
| TGGACATTTAGAAATACTGT+TGG | - | chr1.3:36550283-36550302 | None:intergenic | 30.0% | |
| TTCTCTCATGCAATAAAATG+GGG | + | chr1.3:36549717-36549736 | MS.gene071441:intron | 30.0% | |
| TTTGTGGATCAATCAATTGT+TGG | + | chr1.3:36550761-36550780 | MS.gene071441:intron | 30.0% | |
| ! | AAATAAGGCTCAATTGATTC+TGG | + | chr1.3:36550440-36550459 | MS.gene071441:intron | 30.0% |
| ! | CATTCCTTTTTGTATGTGAA+TGG | + | chr1.3:36550608-36550627 | MS.gene071441:intron | 30.0% |
| ! | TATAACACCTTTATTTCGTC+AGG | + | chr1.3:36549876-36549895 | MS.gene071441:intron | 30.0% |
| ! | TGTCTAGGATTGATCTTAAA+CGG | + | chr1.3:36552127-36552146 | MS.gene071441:CDS | 30.0% |
| ! | TGTTGATGAAGAACTAAATG+CGG | - | chr1.3:36551024-36551043 | None:intergenic | 30.0% |
| ! | TTTAAGCACTGCAATTGATA+TGG | + | chr1.3:36549960-36549979 | MS.gene071441:intron | 30.0% |
| !! | AAATTCAAAAGGCACTCAAT+AGG | - | chr1.3:36551742-36551761 | None:intergenic | 30.0% |
| !!! | ATTTCAACTGCTGATTTTGT+TGG | - | chr1.3:36549068-36549087 | None:intergenic | 30.0% |
| !!! | GTCTGTGTAAATCTTTTTTG+TGG | + | chr1.3:36551336-36551355 | MS.gene071441:intron | 30.0% |
| !!! | TTTTGTTTTTTTGGTAGGAC+TGG | + | chr1.3:36550877-36550896 | MS.gene071441:intron | 30.0% |
| AACGAGACAGAAATTTACAC+TGG | - | chr1.3:36549942-36549961 | None:intergenic | 35.0% | |
| AAGTTTGTGTTGGACTATCT+CGG | - | chr1.3:36549833-36549852 | None:intergenic | 35.0% | |
| ACAAATAGAATATGGACCAG+TGG | - | chr1.3:36551264-36551283 | None:intergenic | 35.0% | |
| ACCATAACCTGACGAAATAA+AGG | - | chr1.3:36549886-36549905 | None:intergenic | 35.0% | |
| AGAAAACAACGAGTATGGTA+TGG | + | chr1.3:36550556-36550575 | MS.gene071441:intron | 35.0% | |
| AGAACTAAATGCGGAGTTTA+AGG | - | chr1.3:36551015-36551034 | None:intergenic | 35.0% | |
| AGATTGAATGGCTTAAACCA+TGG | + | chr1.3:36550957-36550976 | MS.gene071441:CDS | 35.0% | |
| ATAATGACCAAAGTAGTCAG+AGG | + | chr1.3:36552061-36552080 | MS.gene071441:CDS | 35.0% | |
| ATCTGAACAAGAATATGTGG+AGG | + | chr1.3:36552032-36552051 | MS.gene071441:CDS | 35.0% | |
| CAACAAAGAAAGTTACTCCT+AGG | + | chr1.3:36551042-36551061 | MS.gene071441:CDS | 35.0% | |
| CAATTGATTGATCCACAAAG+AGG | - | chr1.3:36550760-36550779 | None:intergenic | 35.0% | |
| CATACTCAAATTTCAACCAC+TGG | + | chr1.3:36551245-36551264 | MS.gene071441:intron | 35.0% | |
| CATCAGGAAAAAATGTGTCT+AGG | + | chr1.3:36552112-36552131 | MS.gene071441:CDS | 35.0% | |
| CATGAAGTAGAAACAGTTGT+TGG | - | chr1.3:36549129-36549148 | None:intergenic | 35.0% | |
| CTGAATTACTTAGCATGTTC+AGG | - | chr1.3:36549019-36549038 | None:intergenic | 35.0% | |
| GGAATCTGAACAAGAATATG+TGG | + | chr1.3:36552029-36552048 | MS.gene071441:CDS | 35.0% | |
| GTGTTTACACAACCATTTCT+GGG | + | chr1.3:36551870-36551889 | MS.gene071441:intron | 35.0% | |
| TCAATAGTGAGAAATTGTGG+CGG | - | chr1.3:36549639-36549658 | None:intergenic | 35.0% | |
| TCCTCAATAGTGAGAAATTG+TGG | - | chr1.3:36549642-36549661 | None:intergenic | 35.0% | |
| TGGATTCGGAAAAAGAGAAA+TGG | + | chr1.3:36550781-36550800 | MS.gene071441:intron | 35.0% | |
| TGGTGACAGGAAAAATCAAA+CGG | + | chr1.3:36550460-36550479 | MS.gene071441:intron | 35.0% | |
| ! | AATGGCTAGTATTTTGTCCA+TGG | + | chr1.3:36551642-36551661 | MS.gene071441:intron | 35.0% |
| ! | ACCTTTATTTCGTCAGGTTA+TGG | + | chr1.3:36549882-36549901 | MS.gene071441:intron | 35.0% |
| ! | ATAAGCTTTTTAACCTCGAG+AGG | + | chr1.3:36549396-36549415 | MS.gene071441:intron | 35.0% |
| ! | GCAAAATAAGCTCTTTTGTG+AGG | + | chr1.3:36549530-36549549 | MS.gene071441:intron | 35.0% |
| ! | TAAGCTTTTTAACCTCGAGA+GGG | + | chr1.3:36549397-36549416 | MS.gene071441:intron | 35.0% |
| ! | TGAATGGATCTAAAGCAACT+TGG | - | chr1.3:36549152-36549171 | None:intergenic | 35.0% |
| !! | TCAATTGAGCCTTATTTAGC+AGG | - | chr1.3:36550437-36550456 | None:intergenic | 35.0% |
| !!! | TTTCGGCTTATTTTACCAGT+TGG | + | chr1.3:36551895-36551914 | MS.gene071441:intron | 35.0% |
| AAACAGGTGTCTCTACTCTT+TGG | + | chr1.3:36548927-36548946 | MS.gene071441:CDS | 40.0% | |
| AACAGGTGTCTCTACTCTTT+GGG | + | chr1.3:36548928-36548947 | MS.gene071441:CDS | 40.0% | |
| AATGGCTTAGAAGGCAGAAT+GGG | - | chr1.3:36550727-36550746 | None:intergenic | 40.0% | |
| AGAAACTTCTTCCACTTCCT+TGG | - | chr1.3:36551983-36552002 | None:intergenic | 40.0% | |
| AGTTTGTGTTGGACTATCTC+GGG | - | chr1.3:36549832-36549851 | None:intergenic | 40.0% | |
| ATGTCTCGACCTGCTAAATA+AGG | + | chr1.3:36550425-36550444 | MS.gene071441:intron | 40.0% | |
| CAATAGTGAGAAATTGTGGC+GGG | - | chr1.3:36549638-36549657 | None:intergenic | 40.0% | |
| CACGTAACATACACAACTAC+TGG | - | chr1.3:36550088-36550107 | None:intergenic | 40.0% | |
| CAGTCACAAGAGAGATTGAA+TGG | + | chr1.3:36550945-36550964 | MS.gene071441:intron | 40.0% | |
| CGTGTTTACACAACCATTTC+TGG | + | chr1.3:36551869-36551888 | MS.gene071441:intron | 40.0% | |
| GAAAAATCAAACGGGTCAAG+TGG | + | chr1.3:36550469-36550488 | MS.gene071441:CDS | 40.0% | |
| GAACAAGAATATGTGGAGGA+TGG | + | chr1.3:36552036-36552055 | MS.gene071441:CDS | 40.0% | |
| GAGGAATCTTCATAGGCAAT+AGG | + | chr1.3:36551819-36551838 | MS.gene071441:intron | 40.0% | |
| GATTGATCTTAAACGGAGAG+AGG | + | chr1.3:36552134-36552153 | MS.gene071441:CDS | 40.0% | |
| GCCACAATTTCTCACTATTG+AGG | + | chr1.3:36549638-36549657 | MS.gene071441:intron | 40.0% | |
| GCTTGAGAAAACAACGAGTA+TGG | + | chr1.3:36550551-36550570 | MS.gene071441:CDS | 40.0% | |
| GGTGACAGGAAAAATCAAAC+GGG | + | chr1.3:36550461-36550480 | MS.gene071441:intron | 40.0% | |
| GTGTGAACCACAGAAGTAAT+GGG | + | chr1.3:36549466-36549485 | MS.gene071441:intron | 40.0% | |
| TATGTGACCCATTACTTCTG+TGG | - | chr1.3:36549476-36549495 | None:intergenic | 40.0% | |
| TGAATGTCCTCTGACTACTT+TGG | - | chr1.3:36552071-36552090 | None:intergenic | 40.0% | |
| TGTGTGAACCACAGAAGTAA+TGG | + | chr1.3:36549465-36549484 | MS.gene071441:intron | 40.0% | |
| TTACCTGAAATGCTACTCTC+TGG | - | chr1.3:36551191-36551210 | None:intergenic | 40.0% | |
| TTGAATGGCTTAAACCATGG+AGG | + | chr1.3:36550960-36550979 | MS.gene071441:CDS | 40.0% | |
| TTGCCTATGAAGATTCCTCT+AGG | - | chr1.3:36551818-36551837 | None:intergenic | 40.0% | |
| TTTCTCACTATTGAGGATCG+TGG | + | chr1.3:36549645-36549664 | MS.gene071441:intron | 40.0% | |
| ! | AAGCTTTTTAACCTCGAGAG+GGG | + | chr1.3:36549398-36549417 | MS.gene071441:intron | 40.0% |
| ! | ACAACCATTTCTGGGTGTTT+CGG | + | chr1.3:36551878-36551897 | MS.gene071441:intron | 40.0% |
| ! | CAATAGGCCAGGGTTTTTAA+AGG | - | chr1.3:36551726-36551745 | None:intergenic | 40.0% |
| ! | GATCCTTGACCTTTTACAGA+TGG | - | chr1.3:36551068-36551087 | None:intergenic | 40.0% |
| ! | GCTATAACGCGCTAATTTTG+TGG | + | chr1.3:36551697-36551716 | MS.gene071441:intron | 40.0% |
| ! | GTGGATACCTTTAAAAACCC+TGG | + | chr1.3:36551716-36551735 | MS.gene071441:intron | 40.0% |
| ! | TGTCACTTCACATTCAATCG+CGG | + | chr1.3:36549571-36549590 | MS.gene071441:intron | 40.0% |
| !! | ATTGTTGCTGGTTCTATCTG+TGG | + | chr1.3:36550683-36550702 | MS.gene071441:intron | 40.0% |
| !! | TTGTTGCTGGTTCTATCTGT+GGG | + | chr1.3:36550684-36550703 | MS.gene071441:intron | 40.0% |
| !!! | GTTTTGGCTTTCAGTTGTTG+TGG | - | chr1.3:36549248-36549267 | None:intergenic | 40.0% |
| AAAGCTTCCGCTCTTTGTCT+TGG | - | chr1.3:36550987-36551006 | None:intergenic | 45.0% | |
| AAATCAAACGGGTCAAGTGG+AGG | + | chr1.3:36550472-36550491 | MS.gene071441:CDS | 45.0% | |
| AATCAAACGGGTCAAGTGGA+GGG | + | chr1.3:36550473-36550492 | MS.gene071441:CDS | 45.0% | |
| ACTATTGAGGATCGTGGTGA+TGG | + | chr1.3:36549651-36549670 | MS.gene071441:intron | 45.0% | |
| ACTCCTAGGCCATCTGTAAA+AGG | + | chr1.3:36551056-36551075 | MS.gene071441:CDS | 45.0% | |
| AGAGTAGAGACACCTGTTTC+TGG | - | chr1.3:36548926-36548945 | None:intergenic | 45.0% | |
| AGCTAGATAAGAGCCTGCTA+CGG | + | chr1.3:36549597-36549616 | MS.gene071441:intron | 45.0% | |
| AGGCCATCTGTAAAAGGTCA+AGG | + | chr1.3:36551062-36551081 | MS.gene071441:CDS | 45.0% | |
| CAAAGAGGAGAGGTTGTGAA+TGG | - | chr1.3:36550745-36550764 | None:intergenic | 45.0% | |
| CAAAGCTTCTGCCTTTGTCT+TGG | - | chr1.3:36550502-36550521 | None:intergenic | 45.0% | |
| CAAGACAAAGGCAGAAGCTT+TGG | + | chr1.3:36550500-36550519 | MS.gene071441:CDS | 45.0% | |
| CCACCTAGAGGAATCTTCAT+AGG | + | chr1.3:36551812-36551831 | MS.gene071441:intron | 45.0% | |
| CCTATGAAGATTCCTCTAGG+TGG | - | chr1.3:36551815-36551834 | None:intergenic | 45.0% | |
| CTCCTGATTCCGATAGCAAT+GGG | + | chr1.3:36552001-36552020 | MS.gene071441:CDS | 45.0% | |
| GAATGGCTTAGAAGGCAGAA+TGG | - | chr1.3:36550728-36550747 | None:intergenic | 45.0% | |
| GAGGTTGTGAATGGCTTAGA+AGG | - | chr1.3:36550736-36550755 | None:intergenic | 45.0% | |
| GATTGATCCACAAAGAGGAG+AGG | - | chr1.3:36550755-36550774 | None:intergenic | 45.0% | |
| GCGATTGAATGTGAAGTGAC+AGG | - | chr1.3:36549572-36549591 | None:intergenic | 45.0% | |
| GTTCCAGAGAGTAGCATTTC+AGG | + | chr1.3:36551185-36551204 | MS.gene071441:CDS | 45.0% | |
| GTTTGTGTTGGACTATCTCG+GGG | - | chr1.3:36549831-36549850 | None:intergenic | 45.0% | |
| TAAGCCGAAACACCCAGAAA+TGG | - | chr1.3:36551885-36551904 | None:intergenic | 45.0% | |
| TATCTGATACTTGCAGTGCC+TGG | + | chr1.3:36549679-36549698 | MS.gene071441:intron | 45.0% | |
| TCCTGATTCCGATAGCAATG+GGG | + | chr1.3:36552002-36552021 | MS.gene071441:CDS | 45.0% | |
| TCTCCTGATTCCGATAGCAA+TGG | + | chr1.3:36552000-36552019 | MS.gene071441:CDS | 45.0% | |
| TCTGCAGCAAAAACACCAAC+TGG | - | chr1.3:36551913-36551932 | None:intergenic | 45.0% | |
| TGATGAAGCTACAGAAGCCA+AGG | + | chr1.3:36551963-36551982 | MS.gene071441:CDS | 45.0% | |
| TGGACTATCTCGGGGTAATT+TGG | - | chr1.3:36549823-36549842 | None:intergenic | 45.0% | |
| TGGTTGTGTAAACACGAGTC+AGG | - | chr1.3:36551865-36551884 | None:intergenic | 45.0% | |
| TTCACAACCTCTCCTCTTTG+TGG | + | chr1.3:36550745-36550764 | MS.gene071441:intron | 45.0% | |
| ! | AGGCTTTTACTTCCACCTAG+AGG | + | chr1.3:36551800-36551819 | MS.gene071441:intron | 45.0% |
| ! | CAGTTGTTGTGGCTTGTAAC+AGG | - | chr1.3:36549237-36549256 | None:intergenic | 45.0% |
| ! | CGTAGTGCTATTCAGTCACA+CGG | + | chr1.3:36551547-36551566 | MS.gene071441:intron | 45.0% |
| ! | GCTCAATTGATTCTGGTGAC+AGG | + | chr1.3:36550447-36550466 | MS.gene071441:intron | 45.0% |
| ! | TGACCTTTTACAGATGGCCT+AGG | - | chr1.3:36551062-36551081 | None:intergenic | 45.0% |
| !! | AAAAGGCACTCAATAGGCCA+GGG | - | chr1.3:36551736-36551755 | None:intergenic | 45.0% |
| !! | CTGGTTCTATCTGTGGGATT+TGG | + | chr1.3:36550690-36550709 | MS.gene071441:intron | 45.0% |
| !! | GAAATGCTACTCTCTGGAAC+AGG | - | chr1.3:36551185-36551204 | None:intergenic | 45.0% |
| !! | GAATTGCTCTTGCTGTTTCC+AGG | - | chr1.3:36549700-36549719 | None:intergenic | 45.0% |
| !! | GTGTCTCTACTCTTTGGGAT+TGG | + | chr1.3:36548933-36548952 | MS.gene071441:CDS | 45.0% |
| !! | AAAAAAATAAAAAAATACAA+TGG | + | chr1.3:36551288-36551307 | MS.gene071441:intron | 5.0% |
| !! | AAAAAATAAAAAAATACAAT+GGG | + | chr1.3:36551289-36551308 | MS.gene071441:intron | 5.0% |
| AGCTACAGAAGCCAAGGAAG+TGG | + | chr1.3:36551969-36551988 | MS.gene071441:CDS | 50.0% | |
| ATCAAACGGGTCAAGTGGAG+GGG | + | chr1.3:36550474-36550493 | MS.gene071441:CDS | 50.0% | |
| ATCACCTGATACCTCTCCTG+TGG | + | chr1.3:36551148-36551167 | MS.gene071441:CDS | 50.0% | |
| CCTGATTCCGATAGCAATGG+GGG | + | chr1.3:36552003-36552022 | MS.gene071441:CDS | 50.0% | |
| CGGGAACTCATTCCAGAAAC+AGG | + | chr1.3:36548911-36548930 | MS.gene071441:CDS | 50.0% | |
| CGTCAGTTCTTACTGCTGAG+AGG | + | chr1.3:36551117-36551136 | MS.gene071441:CDS | 50.0% | |
| CTACTTGTCTCTACCGTAGC+AGG | - | chr1.3:36549613-36549632 | None:intergenic | 50.0% | |
| CTCTCTTGTGACTGCAAGAG+TGG | - | chr1.3:36550939-36550958 | None:intergenic | 50.0% | |
| CTCTTTGTCTTGGTCCTCCA+TGG | - | chr1.3:36550977-36550996 | None:intergenic | 50.0% | |
| TGGAGGACCAAGACAAAGAG+CGG | + | chr1.3:36550977-36550996 | MS.gene071441:CDS | 50.0% | |
| TTCCAGACCCCCATTGCTAT+CGG | - | chr1.3:36552013-36552032 | None:intergenic | 50.0% | |
| !! | CAAAAGGCACTCAATAGGCC+AGG | - | chr1.3:36551737-36551756 | None:intergenic | 50.0% |
| AGGACTGTACCTCCACAGCA+TGG | - | chr1.3:36548959-36548978 | None:intergenic | 55.0% | |
| CCCCCATTGCTATCGGAATC+AGG | - | chr1.3:36552006-36552025 | None:intergenic | 55.0% | |
| GAAGGCAGAATGGGCATGAG+AGG | - | chr1.3:36550718-36550737 | None:intergenic | 55.0% | |
| TCAAACGGGTCAAGTGGAGG+GGG | + | chr1.3:36550475-36550494 | MS.gene071441:CDS | 55.0% | |
| TTCCGATAGCAATGGGGGTC+TGG | + | chr1.3:36552008-36552027 | MS.gene071441:CDS | 55.0% | |
| !! | CTCTGGAACAGGACTGTCAC+TGG | - | chr1.3:36551174-36551193 | None:intergenic | 55.0% |
| !! | CTTTGGGATTGGCCATGCTG+TGG | + | chr1.3:36548944-36548963 | MS.gene071441:CDS | 55.0% |
| ACACACACACACCCCTCTCG+AGG | - | chr1.3:36549412-36549431 | None:intergenic | 60.0% | |
| ACAGGACTGTCACTGGCCAC+AGG | - | chr1.3:36551167-36551186 | None:intergenic | 60.0% | |
| ACTGTCACTGGCCACAGGAG+AGG | - | chr1.3:36551162-36551181 | None:intergenic | 60.0% | |
| CAAACGGGTCAAGTGGAGGG+GGG | + | chr1.3:36550476-36550495 | MS.gene071441:CDS | 60.0% | |
| !! | CTGGCCACAGGAGAGGTATC+AGG | - | chr1.3:36551155-36551174 | None:intergenic | 60.0% |
| !! | TGGGATTGGCCATGCTGTGG+AGG | + | chr1.3:36548947-36548966 | MS.gene071441:CDS | 60.0% |
| GTGGAGGGGGGCCAAGACAA+AGG | + | chr1.3:36550488-36550507 | MS.gene071441:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 36548906 | 36552155 | 36548906 | ID=MS.gene071441 |
| chr1.3 | mRNA | 36548906 | 36552155 | 36548906 | ID=MS.gene071441.t1;Parent=MS.gene071441 |
| chr1.3 | exon | 36548906 | 36548968 | 36548906 | ID=MS.gene071441.t1.exon1;Parent=MS.gene071441.t1 |
| chr1.3 | CDS | 36548906 | 36548968 | 36548906 | ID=cds.MS.gene071441.t1;Parent=MS.gene071441.t1 |
| chr1.3 | exon | 36550469 | 36550572 | 36550469 | ID=MS.gene071441.t1.exon2;Parent=MS.gene071441.t1 |
| chr1.3 | CDS | 36550469 | 36550572 | 36550469 | ID=cds.MS.gene071441.t1;Parent=MS.gene071441.t1 |
| chr1.3 | exon | 36550948 | 36551206 | 36550948 | ID=MS.gene071441.t1.exon3;Parent=MS.gene071441.t1 |
| chr1.3 | CDS | 36550948 | 36551206 | 36550948 | ID=cds.MS.gene071441.t1;Parent=MS.gene071441.t1 |
| chr1.3 | exon | 36551932 | 36552155 | 36551932 | ID=MS.gene071441.t1.exon4;Parent=MS.gene071441.t1 |
| chr1.3 | CDS | 36551932 | 36552155 | 36551932 | ID=cds.MS.gene071441.t1;Parent=MS.gene071441.t1 |
| Gene Sequence |
| Protein sequence |
