Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56468.t1 | XP_003607813.1 | 97.8 | 647 | 13 | 1 | 1 | 647 | 1 | 646 | 0.00E+00 | 1243 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56468.t1 | Q8JFW1 | 35.4 | 633 | 317 | 16 | 53 | 628 | 7 | 604 | 1.2e-83 | 312.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56468.t1 | G7JHJ3 | 97.8 | 647 | 13 | 1 | 1 | 647 | 1 | 646 | 0.0e+00 | 1243.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene56468 | 0.826269 | 2.98E-54 | -1.69E-46 |
| MS.gene049254 | MS.gene56468 | 0.831503 | 1.61E-55 | -1.69E-46 |
| MS.gene049473 | MS.gene56468 | 0.804602 | 2.00E-49 | -1.69E-46 |
| MS.gene049666 | MS.gene56468 | 0.827502 | 1.51E-54 | -1.69E-46 |
| MS.gene049669 | MS.gene56468 | 0.819189 | 1.32E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene56468 | 0.849695 | 2.74E-60 | -1.69E-46 |
| MS.gene049825 | MS.gene56468 | 0.859728 | 3.38E-63 | -1.69E-46 |
| MS.gene049873 | MS.gene56468 | 0.88645 | 3.38E-72 | -1.69E-46 |
| MS.gene050026 | MS.gene56468 | 0.83239 | 9.72E-56 | -1.69E-46 |
| MS.gene050277 | MS.gene56468 | 0.805162 | 1.53E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene56468 | 0.841507 | 4.56E-58 | -1.69E-46 |
| MS.gene050355 | MS.gene56468 | 0.851859 | 6.74E-61 | -1.69E-46 |
| MS.gene050427 | MS.gene56468 | 0.801504 | 8.73E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene56468 | 0.831378 | 1.73E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene56468 | 0.819888 | 9.17E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene56468 | 0.809122 | 2.21E-50 | -1.69E-46 |
| MS.gene050799 | MS.gene56468 | 0.810044 | 1.40E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene56468 | 0.804426 | 2.17E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene56468 | 0.808852 | 2.53E-50 | -1.69E-46 |
| MS.gene051363 | MS.gene56468 | 0.820266 | 7.51E-53 | -1.69E-46 |
| MS.gene051574 | MS.gene56468 | 0.810407 | 1.17E-50 | -1.69E-46 |
| MS.gene051678 | MS.gene56468 | 0.816844 | 4.49E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene56468 | 0.800506 | 1.40E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene56468 | 0.833272 | 5.87E-56 | -1.69E-46 |
| MS.gene05188 | MS.gene56468 | 0.806561 | 7.75E-50 | -1.69E-46 |
| MS.gene051957 | MS.gene56468 | 0.807426 | 5.09E-50 | -1.69E-46 |
| MS.gene052208 | MS.gene56468 | 0.832191 | 1.09E-55 | -1.69E-46 |
| MS.gene052500 | MS.gene56468 | 0.806791 | 6.93E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene56468 | 0.857594 | 1.47E-62 | -1.69E-46 |
| MS.gene052582 | MS.gene56468 | 0.856743 | 2.62E-62 | -1.69E-46 |
| MS.gene052584 | MS.gene56468 | 0.852645 | 4.03E-61 | -1.69E-46 |
| MS.gene052826 | MS.gene56468 | 0.805474 | 1.31E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene56468 | 0.831979 | 1.23E-55 | -1.69E-46 |
| MS.gene052926 | MS.gene56468 | 0.824463 | 7.96E-54 | -1.69E-46 |
| MS.gene052954 | MS.gene56468 | 0.813885 | 2.04E-51 | -1.69E-46 |
| MS.gene053006 | MS.gene56468 | 0.837874 | 4.02E-57 | -1.69E-46 |
| MS.gene053080 | MS.gene56468 | 0.843416 | 1.42E-58 | -1.69E-46 |
| MS.gene05308 | MS.gene56468 | 0.810965 | 8.87E-51 | -1.69E-46 |
| MS.gene053145 | MS.gene56468 | 0.809537 | 1.80E-50 | -1.69E-46 |
| MS.gene053195 | MS.gene56468 | 0.800715 | 1.27E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene56468 | 0.865913 | 4.18E-65 | -1.69E-46 |
| MS.gene053294 | MS.gene56468 | 0.849921 | 2.37E-60 | -1.69E-46 |
| MS.gene053599 | MS.gene56468 | 0.809586 | 1.76E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene56468 | 0.810303 | 1.23E-50 | -1.69E-46 |
| MS.gene05365 | MS.gene56468 | 0.820712 | 5.93E-53 | -1.69E-46 |
| MS.gene053900 | MS.gene56468 | 0.821273 | 4.41E-53 | -1.69E-46 |
| MS.gene053953 | MS.gene56468 | 0.809451 | 1.88E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene56468 | 0.802302 | 5.99E-49 | -1.69E-46 |
| MS.gene053995 | MS.gene56468 | 0.852518 | 4.38E-61 | -1.69E-46 |
| MS.gene05415 | MS.gene56468 | 0.814388 | 1.58E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene56468 | 0.804293 | 2.32E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene56468 | 0.847141 | 1.40E-59 | -1.69E-46 |
| MS.gene054657 | MS.gene56468 | 0.818559 | 1.84E-52 | -1.69E-46 |
| MS.gene055166 | MS.gene56468 | 0.835362 | 1.75E-56 | -1.69E-46 |
| MS.gene05548 | MS.gene56468 | 0.84041 | 8.84E-58 | -1.69E-46 |
| MS.gene055512 | MS.gene56468 | 0.801639 | 8.19E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene56468 | 0.802406 | 5.70E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene56468 | 0.844504 | 7.26E-59 | -1.69E-46 |
| MS.gene055589 | MS.gene56468 | 0.832504 | 9.10E-56 | -1.69E-46 |
| MS.gene055694 | MS.gene56468 | 0.802583 | 5.24E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene56468 | 0.837166 | 6.10E-57 | -1.69E-46 |
| MS.gene055808 | MS.gene56468 | 0.864351 | 1.29E-64 | -1.69E-46 |
| MS.gene055818 | MS.gene56468 | 0.82405 | 9.96E-54 | -1.69E-46 |
| MS.gene055841 | MS.gene56468 | 0.810276 | 1.25E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene56468 | 0.801339 | 9.44E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene56468 | 0.841869 | 3.66E-58 | -1.69E-46 |
| MS.gene056215 | MS.gene56468 | 0.815542 | 8.76E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene56468 | 0.844815 | 5.99E-59 | -1.69E-46 |
| MS.gene056403 | MS.gene56468 | 0.806626 | 7.51E-50 | -1.69E-46 |
| MS.gene056498 | MS.gene56468 | 0.824376 | 8.35E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene56468 | 0.812626 | 3.86E-51 | -1.69E-46 |
| MS.gene05659 | MS.gene56468 | 0.819642 | 1.04E-52 | -1.69E-46 |
| MS.gene056642 | MS.gene56468 | 0.819094 | 1.39E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene56468 | 0.807778 | 4.28E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene56468 | 0.801068 | 1.07E-48 | -1.69E-46 |
| MS.gene056986 | MS.gene56468 | 0.804828 | 1.79E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene56468 | 0.823567 | 1.29E-53 | -1.69E-46 |
| MS.gene057027 | MS.gene56468 | 0.816309 | 5.91E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene56468 | 0.850489 | 1.64E-60 | -1.69E-46 |
| MS.gene057208 | MS.gene56468 | 0.82207 | 2.88E-53 | -1.69E-46 |
| MS.gene057314 | MS.gene56468 | 0.813422 | 2.58E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene56468 | 0.827027 | 1.96E-54 | -1.69E-46 |
| MS.gene057555 | MS.gene56468 | 0.81525 | 1.02E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene56468 | 0.81769 | 2.89E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene56468 | 0.809442 | 1.89E-50 | -1.69E-46 |
| MS.gene05795 | MS.gene56468 | 0.818078 | 2.36E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene56468 | 0.808774 | 2.62E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene56468 | 0.84895 | 4.42E-60 | -1.69E-46 |
| MS.gene058498 | MS.gene56468 | 0.816972 | 4.20E-52 | -1.69E-46 |
| MS.gene058500 | MS.gene56468 | 0.807762 | 4.31E-50 | -1.69E-46 |
| MS.gene058548 | MS.gene56468 | 0.821661 | 3.59E-53 | -1.69E-46 |
| MS.gene058549 | MS.gene56468 | 0.815707 | 8.06E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene56468 | 0.830753 | 2.46E-55 | -1.69E-46 |
| MS.gene058783 | MS.gene56468 | 0.831409 | 1.70E-55 | -1.69E-46 |
| MS.gene058829 | MS.gene56468 | 0.803221 | 3.87E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene56468 | 0.839487 | 1.54E-57 | -1.69E-46 |
| MS.gene059317 | MS.gene56468 | 0.827553 | 1.47E-54 | -1.69E-46 |
| MS.gene05953 | MS.gene56468 | 0.81614 | 6.45E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene56468 | 0.881189 | 2.95E-70 | -1.69E-46 |
| MS.gene059569 | MS.gene56468 | 0.818547 | 1.85E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene56468 | 0.812584 | 3.94E-51 | -1.69E-46 |
| MS.gene05979 | MS.gene56468 | 0.831617 | 1.51E-55 | -1.69E-46 |
| MS.gene059842 | MS.gene56468 | 0.801567 | 8.47E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene56468 | 0.871206 | 8.15E-67 | -1.69E-46 |
| MS.gene060365 | MS.gene56468 | 0.837197 | 5.99E-57 | -1.69E-46 |
| MS.gene060429 | MS.gene56468 | 0.854862 | 9.27E-62 | -1.69E-46 |
| MS.gene060521 | MS.gene56468 | 0.85705 | 2.12E-62 | -1.69E-46 |
| MS.gene060572 | MS.gene56468 | 0.842665 | 2.25E-58 | -1.69E-46 |
| MS.gene060586 | MS.gene56468 | 0.823451 | 1.38E-53 | -1.69E-46 |
| MS.gene060830 | MS.gene56468 | 0.803593 | 3.24E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene56468 | 0.801417 | 9.09E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene56468 | -0.822258 | 2.61E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56468.t1 | MTR_4g083180 | 97.836 | 647 | 13 | 1 | 1 | 647 | 1 | 646 | 0.0 | 1295 |
| MS.gene56468.t1 | MTR_4g083180 | 97.464 | 552 | 13 | 1 | 1 | 552 | 1 | 551 | 0.0 | 1104 |
| MS.gene56468.t1 | MTR_4g083180 | 97.288 | 553 | 14 | 1 | 1 | 553 | 1 | 552 | 0.0 | 1102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56468.t1 | AT2G03667 | 59.908 | 651 | 214 | 9 | 1 | 645 | 1 | 610 | 0.0 | 719 |
| MS.gene56468.t1 | AT2G03667 | 57.323 | 635 | 222 | 10 | 1 | 629 | 1 | 592 | 0.0 | 664 |
Find 147 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTTGGAAGAGAAATTT+AGG | 0.134029 | 4.4:-29902969 | MS.gene56468:CDS |
| TTCGAATTCAAACGGATTTC+TGG | 0.151787 | 4.4:-29907577 | MS.gene56468:CDS |
| TTAACATTGGAATAGCTTTA+TGG | 0.154371 | 4.4:-29904085 | MS.gene56468:CDS |
| GAATCAAATCGGAAGAATTT+TGG | 0.199066 | 4.4:-29901761 | MS.gene56468:CDS |
| TATGATACTTGCGGCATTAC+TGG | 0.227735 | 4.4:-29906061 | MS.gene56468:CDS |
| TTCTCCGCAGAGCTTCTTTC+AGG | 0.244260 | 4.4:+29909349 | None:intergenic |
| GATGTTCTTTCTACAATTAA+AGG | 0.246010 | 4.4:-29908641 | MS.gene56468:CDS |
| AGGATTCTCCTTGTTGGTTC+TGG | 0.256567 | 4.4:-29903978 | MS.gene56468:CDS |
| AACTCGACATGCAAAGAATT+TGG | 0.259227 | 4.4:-29902983 | MS.gene56468:CDS |
| ATTTGTAGGAAATCAAATTT+TGG | 0.264241 | 4.4:-29901695 | MS.gene56468:CDS |
| CGTTTCGTCGTGTTCTATAA+AGG | 0.266928 | 4.4:+29909263 | None:intergenic |
| CTACTTACTGTAAGCTTTGA+TGG | 0.268070 | 4.4:-29905302 | MS.gene56468:CDS |
| TTAGGCTAGATTTCCATTCT+TGG | 0.295521 | 4.4:-29902820 | MS.gene56468:intron |
| GAATTTGGAAGAGAAATTTA+GGG | 0.314158 | 4.4:-29902968 | MS.gene56468:CDS |
| GAATTGAACATCTTAGTTAC+TGG | 0.314500 | 4.4:-29907641 | MS.gene56468:CDS |
| ATACCAGTGGCCTGCTGATC+TGG | 0.314738 | 4.4:+29908375 | None:intergenic |
| TCTTGGATGAGGATGTTATA+AGG | 0.320991 | 4.4:-29902803 | MS.gene56468:CDS |
| CGGTGCAACTTTGCAGCTTA+GGG | 0.326746 | 4.4:-29909193 | MS.gene56468:CDS |
| TTCTTCACACCCAAGCTATC+AGG | 0.334928 | 4.4:+29909321 | None:intergenic |
| ATAGCTTTATGGCTCGCTTC+TGG | 0.341166 | 4.4:-29904074 | MS.gene56468:CDS |
| TCGGTGCAACTTTGCAGCTT+AGG | 0.341471 | 4.4:-29909194 | MS.gene56468:CDS |
| ATTGCATAGGCTGTGATATC+TGG | 0.346833 | 4.4:-29906141 | MS.gene56468:intron |
| TCCGCTTGTTCAGCCTTTAG+TGG | 0.349517 | 4.4:-29909163 | MS.gene56468:CDS |
| CGAAACATTCTGGTGTATAA+TGG | 0.352754 | 4.4:-29909132 | MS.gene56468:intron |
| GATGAACAGTGTGCTGGTTA+TGG | 0.367158 | 4.4:-29903951 | MS.gene56468:CDS |
| GGATGCTTCTCGAAACATTC+TGG | 0.367158 | 4.4:-29909142 | MS.gene56468:CDS |
| GTTCTATAAAGGATGAGATT+TGG | 0.372374 | 4.4:+29909274 | None:intergenic |
| GCCTGCTGATCTGGAGCAAC+TGG | 0.375811 | 4.4:+29908384 | None:intergenic |
| CGCTTCTGGTGGTGATGGAT+GGG | 0.378774 | 4.4:-29904060 | MS.gene56468:CDS |
| CTTGGATGAGGATGTTATAA+GGG | 0.386802 | 4.4:-29902802 | MS.gene56468:CDS |
| TGATGCTGACTTGTCAGATT+TGG | 0.390352 | 4.4:-29904256 | MS.gene56468:CDS |
| TTGGGGAAGTTGAGTGGAAT+GGG | 0.390754 | 4.4:+29909619 | None:intergenic |
| CTGAAGGTTGCACAATTGCT+TGG | 0.402771 | 4.4:-29901932 | MS.gene56468:intron |
| GCAGAAAATGAAGCTCATAA+TGG | 0.407580 | 4.4:-29907663 | MS.gene56468:intron |
| TCGCTTCTGGTGGTGATGGA+TGG | 0.408976 | 4.4:-29904061 | MS.gene56468:CDS |
| TCCTGTGGTTCTTATTTGAC+TGG | 0.408994 | 4.4:-29908698 | MS.gene56468:CDS |
| TCTTCCCAAGCGGGCAATCC+AGG | 0.409100 | 4.4:-29901891 | MS.gene56468:intron |
| GCACACCTGGATTGCCCGCT+TGG | 0.411228 | 4.4:+29901886 | None:intergenic |
| AATGCAAGGATTCTCCTTGT+TGG | 0.411893 | 4.4:-29903984 | MS.gene56468:CDS |
| ATGAACAGTGTGCTGGTTAT+GGG | 0.415694 | 4.4:-29903950 | MS.gene56468:CDS |
| GTCATTGTATACTATCTATC+AGG | 0.417008 | 4.4:-29907145 | MS.gene56468:intron |
| CTTGGGAATTGTTGCTCCTG+TGG | 0.427510 | 4.4:-29908713 | MS.gene56468:CDS |
| CAGGCAGTGTAAGGATTTGT+AGG | 0.429146 | 4.4:-29901709 | MS.gene56468:CDS |
| AGGATAGTTCAAGGACCCTT+TGG | 0.431242 | 4.4:-29908494 | MS.gene56468:CDS |
| AAGTAATCGAGCAGCAAATC+AGG | 0.431308 | 4.4:-29901738 | MS.gene56468:CDS |
| TTCTATTGCAGGATAGTTCA+AGG | 0.432555 | 4.4:-29908503 | MS.gene56468:intron |
| ATAAAGCTATTCCAATGTTA+AGG | 0.439997 | 4.4:+29904087 | None:intergenic |
| GGAATTGCATTGACCGTCTC+AGG | 0.441436 | 4.4:-29909666 | MS.gene56468:CDS |
| GGCGGAGCCTTCTTGTTCAC+TGG | 0.445360 | 4.4:-29908449 | MS.gene56468:CDS |
| AGTTCAAGGACCCTTTGGTT+TGG | 0.446623 | 4.4:-29908489 | MS.gene56468:CDS |
| GACCATGGGCTATCATCTAT+TGG | 0.452967 | 4.4:-29908619 | MS.gene56468:CDS |
| AGTTTCTTATGCAGACTCTT+GGG | 0.458584 | 4.4:-29908730 | MS.gene56468:CDS |
| AGGCGTCTGCAGGCAGTGTA+AGG | 0.458985 | 4.4:-29901718 | MS.gene56468:CDS |
| CACACCTGGATTGCCCGCTT+GGG | 0.462355 | 4.4:+29901887 | None:intergenic |
| TTTGGGGAAGTTGAGTGGAA+TGG | 0.465230 | 4.4:+29909618 | None:intergenic |
| AGTTGAGTGGAATGGGAGAG+AGG | 0.468545 | 4.4:+29909626 | None:intergenic |
| AGCACTCACAACTGGGATCC+AGG | 0.469254 | 4.4:+29906031 | None:intergenic |
| GAGAAGAGGTCCTGATAGCT+TGG | 0.474458 | 4.4:-29909331 | MS.gene56468:CDS |
| TGGTTTGGCCGAGATGCATT+TGG | 0.474834 | 4.4:-29908474 | MS.gene56468:CDS |
| TGGCTCGCTTCTGGTGGTGA+TGG | 0.475719 | 4.4:-29904065 | MS.gene56468:CDS |
| ATAGATGTATTGCTGATAAC+GGG | 0.477324 | 4.4:-29902938 | MS.gene56468:CDS |
| ATATGCCTTAATCAGTTGGC+TGG | 0.477902 | 4.4:-29903024 | MS.gene56468:intron |
| GAGTTTCTTATGCAGACTCT+TGG | 0.484407 | 4.4:-29908731 | MS.gene56468:CDS |
| GATAGAAAATCTGCCAAGGC+AGG | 0.484885 | 4.4:-29905266 | MS.gene56468:CDS |
| TTTACTCAACATTCCATTGT+GGG | 0.487822 | 4.4:-29902778 | MS.gene56468:CDS |
| TAGTTCTTTCAACCCTGCCT+TGG | 0.492382 | 4.4:+29905253 | None:intergenic |
| TTCTACAATTAAAGGACCAT+GGG | 0.492445 | 4.4:-29908633 | MS.gene56468:CDS |
| GCAGCAAATCAGGCGTCTGC+AGG | 0.493660 | 4.4:-29901728 | MS.gene56468:CDS |
| TAGATTTCCATTCTTGGATG+AGG | 0.494104 | 4.4:-29902814 | MS.gene56468:CDS |
| TGGATTGCATACCGTCTTGA+CGG | 0.501054 | 4.4:+29905218 | None:intergenic |
| GCCAGTTGCTCCAGATCAGC+AGG | 0.501944 | 4.4:-29908385 | MS.gene56468:CDS |
| ATATACAAACTCAACATTGA+AGG | 0.502927 | 4.4:-29907532 | MS.gene56468:CDS |
| CCAGAGAAAAGAATTGCAAC+AGG | 0.504982 | 4.4:+29906096 | None:intergenic |
| GATAGATGTATTGCTGATAA+CGG | 0.505667 | 4.4:-29902939 | MS.gene56468:CDS |
| GGCGATTTGGGGAAGTTGAG+TGG | 0.513848 | 4.4:+29909613 | None:intergenic |
| TTTCTACAATTAAAGGACCA+TGG | 0.517454 | 4.4:-29908634 | MS.gene56468:CDS |
| ATGCATCTCGGCCAAACCAA+AGG | 0.517811 | 4.4:+29908478 | None:intergenic |
| GAATTGCGAGGGAATCAAAT+CGG | 0.518766 | 4.4:-29901772 | MS.gene56468:CDS |
| TATGCCTTAATCAGTTGGCT+GGG | 0.520727 | 4.4:-29903023 | MS.gene56468:intron |
| GAGACAGTTCCATGCGAAGC+AGG | 0.526342 | 4.4:-29907402 | MS.gene56468:intron |
| GATTAGTACCATGTAGGTGT+TGG | 0.527041 | 4.4:+29904194 | None:intergenic |
| AATTGAACATCTTAGTTACT+GGG | 0.534296 | 4.4:-29907640 | MS.gene56468:CDS |
| AGAAGAGGTCCTGATAGCTT+GGG | 0.535911 | 4.4:-29909330 | MS.gene56468:CDS |
| GCCACTAGGTTGATCAAGGT+TGG | 0.537230 | 4.4:+29902749 | None:intergenic |
| GCCGAGATGCATTTGGTAGG+CGG | 0.538103 | 4.4:-29908467 | MS.gene56468:CDS |
| ATAACATCCTCATCCAAGAA+TGG | 0.538611 | 4.4:+29902807 | None:intergenic |
| TTTCGAGAAGCATCCACTAA+AGG | 0.538876 | 4.4:+29909150 | None:intergenic |
| GTGGATGCTTCGAATTCAAA+CGG | 0.541109 | 4.4:-29907585 | MS.gene56468:CDS |
| TGCATCTCGGCCAAACCAAA+GGG | 0.542020 | 4.4:+29908479 | None:intergenic |
| ATGGGCTATCATCTATTGGC+AGG | 0.544781 | 4.4:-29908615 | MS.gene56468:intron |
| GGCATTACTGGATCAATGCC+TGG | 0.546449 | 4.4:-29906049 | MS.gene56468:CDS |
| CGATGCCACTAGGTTGATCA+AGG | 0.546600 | 4.4:+29902745 | None:intergenic |
| AACAAGGAGAATCCTTGCAT+TGG | 0.546989 | 4.4:+29903986 | None:intergenic |
| AACGGAGAACTTCATTTCAT+CGG | 0.547006 | 4.4:-29909213 | MS.gene56468:CDS |
| AACTGTGTTAAATGCGGGAA+AGG | 0.547646 | 4.4:-29908674 | MS.gene56468:CDS |
| GGTGCTGATGAACAGTGTGC+TGG | 0.549892 | 4.4:-29903957 | MS.gene56468:CDS |
| GCTCCAGATCAGCAGGCCAC+TGG | 0.553421 | 4.4:-29908378 | MS.gene56468:intron |
| ACTTAGGGCAGGATGTCTGC+AGG | 0.555484 | 4.4:+29907463 | None:intergenic |
| TAGTAATAACCTGCTTCGCA+TGG | 0.561332 | 4.4:+29907393 | None:intergenic |
| AAAGAAGCTCTGCGGAGAAG+AGG | 0.562727 | 4.4:-29909345 | MS.gene56468:CDS |
| TTGGCCGAGATGCATTTGGT+AGG | 0.570304 | 4.4:-29908470 | MS.gene56468:CDS |
| CTTGATCAACCTAGTGGCAT+CGG | 0.570501 | 4.4:-29902744 | MS.gene56468:CDS |
| AATTCAAACGGATTTCTGGT+TGG | 0.573232 | 4.4:-29907573 | MS.gene56468:CDS |
| TCCACTAAAGGCTGAACAAG+CGG | 0.574215 | 4.4:+29909162 | None:intergenic |
| AGCAGCGGTTCTTCCCAAGC+GGG | 0.574387 | 4.4:-29901900 | MS.gene56468:CDS |
| AGTACCATGTAGGTGTTGGA+AGG | 0.577841 | 4.4:+29904198 | None:intergenic |
| AGCAACATATGAGCTCGCAT+TGG | 0.577951 | 4.4:+29907201 | None:intergenic |
| ACCAGTCAAATAAGAACCAC+AGG | 0.577955 | 4.4:+29908697 | None:intergenic |
| AAAGTTGAATCATCTTCTGT+AGG | 0.580809 | 4.4:+29908426 | None:intergenic |
| AAATCCTTCCAACACCTACA+TGG | 0.583957 | 4.4:-29904202 | MS.gene56468:intron |
| TCCGCCTACCAAATGCATCT+CGG | 0.585873 | 4.4:+29908466 | None:intergenic |
| GCTTTATGGCTCGCTTCTGG+TGG | 0.587213 | 4.4:-29904071 | MS.gene56468:CDS |
| GGTGCAACTTTGCAGCTTAG+GGG | 0.596413 | 4.4:-29909192 | MS.gene56468:CDS |
| GTTTGGTTCTAGAATTGCGA+GGG | 0.601355 | 4.4:-29901783 | MS.gene56468:CDS |
| AGGTTGGCAACCTCCCACAA+TGG | 0.602775 | 4.4:+29902765 | None:intergenic |
| CTGGTAACTGTGTTAAATGC+GGG | 0.603339 | 4.4:-29908679 | MS.gene56468:CDS |
| AGGATTGATTAGTACCATGT+AGG | 0.603931 | 4.4:+29904188 | None:intergenic |
| ACTCAACATTCCATTGTGGG+AGG | 0.607103 | 4.4:-29902775 | MS.gene56468:CDS |
| ATGCCTTAATCAGTTGGCTG+GGG | 0.607245 | 4.4:-29903022 | MS.gene56468:intron |
| AAGAGTCTGCATAAGAAACT+CGG | 0.611073 | 4.4:+29908733 | None:intergenic |
| CAGTTGGCTGGGGCTAGATG+AGG | 0.613342 | 4.4:-29903012 | MS.gene56468:CDS |
| TTAAATACAAGTCCAATGCA+AGG | 0.613359 | 4.4:-29903998 | MS.gene56468:CDS |
| GAAGCAGAAACGAAGATGTG+TGG | 0.614701 | 4.4:-29909687 | None:intergenic |
| ATAGAAAATCTGCCAAGGCA+GGG | 0.618548 | 4.4:-29905265 | MS.gene56468:CDS |
| CTGTAGGCCAGTGAACAAGA+AGG | 0.621892 | 4.4:+29908442 | None:intergenic |
| TCCTGATAGAAAATCTGCCA+AGG | 0.622329 | 4.4:-29905270 | MS.gene56468:CDS |
| CATTGAAGGAACTTATCAAG+TGG | 0.622380 | 4.4:-29907518 | MS.gene56468:CDS |
| CATCAGCACCAGAACCAACA+AGG | 0.625991 | 4.4:+29903970 | None:intergenic |
| ATTGAAGGAACTTATCAAGT+GGG | 0.628054 | 4.4:-29907517 | MS.gene56468:CDS |
| GCTGGATTCTATGATACTTG+CGG | 0.628488 | 4.4:-29906070 | MS.gene56468:CDS |
| GTTAATTCGAATGCCTGAGA+CGG | 0.629293 | 4.4:+29909653 | None:intergenic |
| AAAGAGTTGCACCGTCAAGA+CGG | 0.637047 | 4.4:-29905229 | MS.gene56468:intron |
| TGCCAATAGATGATAGCCCA+TGG | 0.642233 | 4.4:+29908617 | None:intergenic |
| AAAGTGCAGGTGGAGACTCG+TGG | 0.644656 | 4.4:-29904283 | MS.gene56468:intron |
| ATGTATTGCTGATAACGGGA+AGG | 0.646619 | 4.4:-29902934 | MS.gene56468:CDS |
| ATAATGATGACACTCATGCA+CGG | 0.647092 | 4.4:-29904022 | MS.gene56468:CDS |
| TATTGCTGATAACGGGAAGG+AGG | 0.649083 | 4.4:-29902931 | MS.gene56468:intron |
| GCTTGGTTTATATGAAGCAG+CGG | 0.661880 | 4.4:-29901915 | MS.gene56468:CDS |
| AAGCAGCGGTTCTTCCCAAG+CGG | 0.665430 | 4.4:-29901901 | MS.gene56468:CDS |
| TCTGCAAATGAAGACAGTAA+CGG | 0.682909 | 4.4:-29909231 | MS.gene56468:CDS |
| ACTGGTAACTGTGTTAAATG+CGG | 0.692384 | 4.4:-29908680 | MS.gene56468:CDS |
| TACTGGGAAGAGCTACCATG+TGG | 0.698665 | 4.4:-29907624 | MS.gene56468:CDS |
| GCCAACCTTGATCAACCTAG+TGG | 0.703456 | 4.4:-29902750 | MS.gene56468:CDS |
| TGCATACTATATATTCCACA+TGG | 0.727847 | 4.4:+29907609 | None:intergenic |
| ATGACCTGAAAGAAGCTCTG+CGG | 0.729969 | 4.4:-29909353 | MS.gene56468:CDS |
| AGTTTGGTTCTAGAATTGCG+AGG | 0.738420 | 4.4:-29901784 | MS.gene56468:CDS |
| TGGAATATATAGTATGCACG+TGG | 0.745413 | 4.4:-29907604 | MS.gene56468:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 29901691 | 29909694 | 29901691 | ID=MS.gene56468 |
| chr4.4 | mRNA | 29901691 | 29909694 | 29901691 | ID=MS.gene56468.t1;Parent=MS.gene56468 |
| chr4.4 | exon | 29909602 | 29909694 | 29909602 | ID=MS.gene56468.t1.exon1;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29909602 | 29909694 | 29909602 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29909133 | 29909391 | 29909133 | ID=MS.gene56468.t1.exon2;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29909133 | 29909391 | 29909133 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29908616 | 29908800 | 29908616 | ID=MS.gene56468.t1.exon3;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29908616 | 29908800 | 29908616 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29908379 | 29908514 | 29908379 | ID=MS.gene56468.t1.exon4;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29908379 | 29908514 | 29908379 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29907403 | 29907681 | 29907403 | ID=MS.gene56468.t1.exon5;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29907403 | 29907681 | 29907403 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29907146 | 29907243 | 29907146 | ID=MS.gene56468.t1.exon6;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29907146 | 29907243 | 29907146 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29906040 | 29906154 | 29906040 | ID=MS.gene56468.t1.exon7;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29906040 | 29906154 | 29906040 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29905230 | 29905335 | 29905230 | ID=MS.gene56468.t1.exon8;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29905230 | 29905335 | 29905230 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29904203 | 29904296 | 29904203 | ID=MS.gene56468.t1.exon9;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29904203 | 29904296 | 29904203 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29903921 | 29904111 | 29903921 | ID=MS.gene56468.t1.exon10;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29903921 | 29904111 | 29903921 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29902932 | 29903031 | 29902932 | ID=MS.gene56468.t1.exon11;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29902932 | 29903031 | 29902932 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29902722 | 29902838 | 29902722 | ID=MS.gene56468.t1.exon12;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29902722 | 29902838 | 29902722 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29901892 | 29901948 | 29901892 | ID=MS.gene56468.t1.exon13;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29901892 | 29901948 | 29901892 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| chr4.4 | exon | 29901691 | 29901804 | 29901691 | ID=MS.gene56468.t1.exon14;Parent=MS.gene56468.t1 |
| chr4.4 | CDS | 29901691 | 29901804 | 29901691 | ID=cds.MS.gene56468.t1;Parent=MS.gene56468.t1 |
| Gene Sequence |
| Protein sequence |
