Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66474.t1 | XP_003589050.2 | 59.3 | 580 | 60 | 8 | 1 | 405 | 1 | 579 | 5.20E-153 | 550.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66474.t1 | Q43207 | 54.9 | 255 | 114 | 1 | 117 | 371 | 298 | 551 | 9.5e-71 | 268.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66474.t1 | G7IBB7 | 59.3 | 580 | 60 | 8 | 1 | 405 | 1 | 579 | 3.8e-153 | 550.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049669 | MS.gene66474 | 0.802333 | 5.90E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene66474 | 0.800153 | 1.65E-48 | -1.69E-46 |
| MS.gene049825 | MS.gene66474 | 0.856183 | 3.82E-62 | -1.69E-46 |
| MS.gene049873 | MS.gene66474 | 0.868464 | 6.41E-66 | -1.69E-46 |
| MS.gene050201 | MS.gene66474 | 0.801077 | 1.07E-48 | -1.69E-46 |
| MS.gene050277 | MS.gene66474 | 0.800143 | 1.66E-48 | -1.69E-46 |
| MS.gene050303 | MS.gene66474 | 0.850649 | 1.48E-60 | -1.69E-46 |
| MS.gene050355 | MS.gene66474 | 0.826507 | 2.61E-54 | -1.69E-46 |
| MS.gene050719 | MS.gene66474 | 0.817575 | 3.07E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene66474 | 0.821232 | 4.51E-53 | -1.69E-46 |
| MS.gene050799 | MS.gene66474 | 0.823949 | 1.05E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene66474 | 0.809443 | 1.89E-50 | -1.69E-46 |
| MS.gene051633 | MS.gene66474 | 0.809167 | 2.16E-50 | -1.69E-46 |
| MS.gene051678 | MS.gene66474 | 0.881262 | 2.78E-70 | -1.69E-46 |
| MS.gene052012 | MS.gene66474 | 0.801053 | 1.08E-48 | -1.69E-46 |
| MS.gene052176 | MS.gene66474 | 0.805017 | 1.64E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene66474 | 0.80909 | 2.25E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene66474 | 0.802577 | 5.25E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene66474 | -0.804335 | 2.27E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene66474 | -0.844783 | 6.10E-59 | -1.69E-46 |
| MS.gene052376 | MS.gene66474 | 0.817912 | 2.58E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene66474 | 0.849484 | 3.14E-60 | -1.69E-46 |
| MS.gene052773 | MS.gene66474 | 0.807522 | 4.85E-50 | -1.69E-46 |
| MS.gene052926 | MS.gene66474 | 0.838523 | 2.73E-57 | -1.69E-46 |
| MS.gene053006 | MS.gene66474 | 0.818173 | 2.25E-52 | -1.69E-46 |
| MS.gene053145 | MS.gene66474 | 0.823165 | 1.60E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene66474 | 0.812184 | 4.82E-51 | -1.69E-46 |
| MS.gene053294 | MS.gene66474 | 0.851757 | 7.21E-61 | -1.69E-46 |
| MS.gene05365 | MS.gene66474 | 0.80248 | 5.50E-49 | -1.69E-46 |
| MS.gene053900 | MS.gene66474 | 0.808389 | 3.17E-50 | -1.69E-46 |
| MS.gene053953 | MS.gene66474 | 0.814612 | 1.41E-51 | -1.69E-46 |
| MS.gene053995 | MS.gene66474 | 0.802569 | 5.27E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene66474 | 0.819528 | 1.11E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene66474 | 0.813264 | 2.79E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene66474 | 0.804612 | 1.99E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene66474 | 0.844109 | 9.26E-59 | -1.69E-46 |
| MS.gene055818 | MS.gene66474 | 0.820006 | 8.61E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene66474 | 0.85628 | 3.58E-62 | -1.69E-46 |
| MS.gene056366 | MS.gene66474 | 0.815441 | 9.23E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene66474 | 0.811605 | 6.44E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene66474 | 0.815995 | 6.95E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene66474 | 0.800574 | 1.35E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene66474 | 0.812757 | 3.61E-51 | -1.69E-46 |
| MS.gene057027 | MS.gene66474 | 0.815121 | 1.09E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene66474 | 0.822192 | 2.70E-53 | -1.69E-46 |
| MS.gene057079 | MS.gene66474 | 0.842599 | 2.34E-58 | -1.69E-46 |
| MS.gene057140 | MS.gene66474 | 0.802373 | 5.78E-49 | -1.69E-46 |
| MS.gene057555 | MS.gene66474 | 0.804434 | 2.16E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene66474 | 0.849441 | 3.23E-60 | -1.69E-46 |
| MS.gene057980 | MS.gene66474 | 0.802606 | 5.18E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene66474 | 0.811024 | 8.61E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene66474 | 0.831085 | 2.04E-55 | -1.69E-46 |
| MS.gene058084 | MS.gene66474 | 0.807279 | 5.46E-50 | -1.69E-46 |
| MS.gene058498 | MS.gene66474 | 0.852403 | 4.72E-61 | -1.69E-46 |
| MS.gene058500 | MS.gene66474 | 0.830215 | 3.33E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene66474 | 0.81811 | 2.33E-52 | -1.69E-46 |
| MS.gene058635 | MS.gene66474 | 0.801362 | 9.33E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene66474 | 0.805813 | 1.11E-49 | -1.69E-46 |
| MS.gene059317 | MS.gene66474 | 0.813368 | 2.65E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene66474 | 0.858402 | 8.44E-63 | -1.69E-46 |
| MS.gene059569 | MS.gene66474 | 0.804445 | 2.15E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene66474 | 0.804755 | 1.86E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene66474 | 0.80155 | 8.54E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene66474 | 0.808621 | 2.83E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene66474 | 0.804989 | 1.66E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene66474 | 0.825366 | 4.88E-54 | -1.69E-46 |
| MS.gene060572 | MS.gene66474 | 0.861074 | 1.32E-63 | -1.69E-46 |
| MS.gene060586 | MS.gene66474 | 0.863742 | 2.00E-64 | -1.69E-46 |
| MS.gene060907 | MS.gene66474 | 0.816791 | 4.61E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene66474 | -0.847411 | 1.18E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66474.t1 | MTR_1g017870 | 96.886 | 289 | 8 | 1 | 117 | 405 | 166 | 453 | 0.0 | 561 |
| MS.gene66474.t1 | MTR_1g017870 | 96.886 | 289 | 8 | 1 | 117 | 405 | 268 | 555 | 0.0 | 561 |
| MS.gene66474.t1 | MTR_1g017870 | 96.886 | 289 | 8 | 1 | 117 | 405 | 82 | 369 | 0.0 | 560 |
| MS.gene66474.t1 | MTR_1g017870 | 96.886 | 289 | 8 | 1 | 117 | 405 | 292 | 579 | 0.0 | 559 |
| MS.gene66474.t1 | MTR_1g017870 | 31.395 | 258 | 122 | 5 | 1 | 203 | 1 | 258 | 1.72e-14 | 75.5 |
| MS.gene66474.t1 | MTR_1g017870 | 95.785 | 261 | 11 | 0 | 115 | 375 | 80 | 340 | 0.0 | 506 |
| MS.gene66474.t1 | MTR_1g017870 | 96.525 | 259 | 9 | 0 | 117 | 375 | 166 | 424 | 7.51e-180 | 507 |
| MS.gene66474.t1 | MTR_1g017870 | 96.525 | 259 | 9 | 0 | 117 | 375 | 292 | 550 | 1.20e-177 | 506 |
| MS.gene66474.t1 | MTR_1g017870 | 31.395 | 258 | 122 | 5 | 1 | 203 | 1 | 258 | 2.22e-14 | 75.1 |
| MS.gene66474.t1 | MTR_8g012340 | 56.574 | 251 | 107 | 1 | 123 | 371 | 302 | 552 | 1.65e-89 | 281 |
| MS.gene66474.t1 | MTR_8g080980 | 53.333 | 270 | 123 | 1 | 117 | 386 | 294 | 560 | 2.23e-87 | 276 |
| MS.gene66474.t1 | MTR_7g053470 | 56.098 | 246 | 106 | 2 | 123 | 367 | 296 | 540 | 7.21e-86 | 271 |
| MS.gene66474.t1 | MTR_8g011560 | 44.262 | 183 | 96 | 2 | 114 | 291 | 25 | 206 | 7.51e-45 | 155 |
| MS.gene66474.t1 | MTR_8g010620 | 47.093 | 172 | 87 | 2 | 123 | 291 | 104 | 274 | 6.08e-44 | 155 |
| MS.gene66474.t1 | MTR_8g010620 | 47.093 | 172 | 87 | 2 | 123 | 291 | 171 | 341 | 7.55e-43 | 154 |
| MS.gene66474.t1 | MTR_8g010620 | 47.093 | 172 | 87 | 2 | 123 | 291 | 207 | 377 | 1.60e-42 | 154 |
| MS.gene66474.t1 | MTR_8g010620 | 47.093 | 172 | 87 | 2 | 123 | 291 | 232 | 402 | 1.98e-42 | 154 |
| MS.gene66474.t1 | MTR_8g011100 | 47.305 | 167 | 84 | 2 | 123 | 286 | 218 | 383 | 7.35e-42 | 152 |
| MS.gene66474.t1 | MTR_4g055500 | 32.129 | 249 | 164 | 3 | 120 | 366 | 303 | 548 | 5.05e-27 | 113 |
| MS.gene66474.t1 | MTR_4g039430 | 32.927 | 246 | 150 | 7 | 136 | 371 | 96 | 336 | 7.02e-26 | 107 |
| MS.gene66474.t1 | MTR_8g011580 | 33.333 | 189 | 85 | 3 | 117 | 291 | 104 | 265 | 3.54e-24 | 102 |
| MS.gene66474.t1 | MTR_8g012360 | 32.461 | 191 | 108 | 4 | 106 | 292 | 79 | 252 | 2.33e-23 | 99.0 |
| MS.gene66474.t1 | MTR_8g038785 | 52.174 | 92 | 40 | 1 | 114 | 205 | 428 | 515 | 7.48e-22 | 98.2 |
| MS.gene66474.t1 | MTR_8g008640 | 50.000 | 90 | 43 | 1 | 118 | 205 | 222 | 311 | 7.06e-20 | 92.4 |
| MS.gene66474.t1 | MTR_8g011110 | 40.741 | 81 | 48 | 0 | 166 | 246 | 19 | 99 | 3.79e-15 | 72.8 |
| MS.gene66474.t1 | MTR_8g014190 | 46.269 | 67 | 36 | 0 | 180 | 246 | 4 | 70 | 4.79e-12 | 63.5 |
| MS.gene66474.t1 | MTR_7g059150 | 33.582 | 134 | 77 | 2 | 221 | 352 | 95 | 218 | 1.55e-11 | 64.7 |
| MS.gene66474.t1 | MTR_8g011140 | 40.187 | 107 | 43 | 4 | 123 | 224 | 175 | 265 | 1.73e-11 | 64.7 |
| MS.gene66474.t1 | MTR_8g012350 | 47.273 | 55 | 29 | 0 | 140 | 194 | 17 | 71 | 2.57e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66474.t1 | AT3G25230 | 53.906 | 256 | 117 | 1 | 117 | 371 | 295 | 550 | 7.81e-87 | 274 |
| MS.gene66474.t1 | AT3G25230 | 54.365 | 252 | 114 | 1 | 117 | 367 | 295 | 546 | 1.20e-86 | 274 |
| MS.gene66474.t1 | AT5G48570 | 53.846 | 247 | 112 | 2 | 123 | 367 | 310 | 556 | 1.86e-84 | 269 |
| MS.gene66474.t1 | AT1G58450 | 59.615 | 156 | 62 | 1 | 212 | 367 | 1 | 155 | 1.54e-58 | 188 |
| MS.gene66474.t1 | AT3G54010 | 31.538 | 260 | 163 | 5 | 115 | 366 | 204 | 456 | 3.88e-26 | 110 |
| MS.gene66474.t1 | AT3G54010 | 31.538 | 260 | 163 | 5 | 115 | 366 | 294 | 546 | 3.98e-26 | 110 |
| MS.gene66474.t1 | AT3G21640 | 32.917 | 240 | 154 | 5 | 136 | 369 | 91 | 329 | 3.45e-25 | 105 |
| MS.gene66474.t1 | AT4G30480 | 33.140 | 172 | 83 | 5 | 221 | 389 | 105 | 247 | 1.33e-12 | 68.2 |
| MS.gene66474.t1 | AT5G21990 | 34.677 | 124 | 75 | 1 | 217 | 340 | 99 | 216 | 1.74e-12 | 69.3 |
Find 75 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGAAAGTCATTCAGTTTA+AGG | 0.149462 | 1.4:+5050823 | None:intergenic |
| ACTAATATTACCTTTGTCTT+AGG | 0.211264 | 1.4:+5049727 | None:intergenic |
| GTTAGCAGAGATGGATCTTT+AGG | 0.231303 | 1.4:-5050912 | MS.gene66474:CDS |
| ATACATCCCGATTATGCTTT+TGG | 0.235249 | 1.4:-5051833 | MS.gene66474:CDS |
| AACATTTCCAAAAGCATAAT+CGG | 0.256443 | 1.4:+5051826 | None:intergenic |
| AGAGGATGGGGTGGTGAAAA+TGG | 0.273488 | 1.4:-5049296 | MS.gene66474:CDS |
| ATCGGGATGTATACTGATTA+TGG | 0.284749 | 1.4:+5051844 | None:intergenic |
| CGCAAAGATGGCAGTGTTAT+CGG | 0.294603 | 1.4:-5052698 | None:intergenic |
| TCTGTAGAACAAGTGATTAC+TGG | 0.347109 | 1.4:-5051908 | MS.gene66474:intron |
| TTAGCAGAGATGGATCTTTA+GGG | 0.377376 | 1.4:-5050911 | MS.gene66474:CDS |
| CTTAAACTGAATGACTTTCC+TGG | 0.382468 | 1.4:-5050822 | MS.gene66474:CDS |
| AGAAGCTTCTCAGAACTATA+AGG | 0.384792 | 1.4:-5052567 | MS.gene66474:CDS |
| TTAAAGTATACAGGTTCAAC+AGG | 0.393822 | 1.4:+5049216 | None:intergenic |
| GGAGATAAAAGAAGATGAAC+TGG | 0.402641 | 1.4:-5052677 | MS.gene66474:CDS |
| TGGGGTGGTGAAAATGGAAA+TGG | 0.423574 | 1.4:-5049290 | MS.gene66474:CDS |
| AGGAGCCACTGTTTACTGAT+TGG | 0.426744 | 1.4:-5052158 | MS.gene66474:CDS |
| CTGAGAAGCTTCTTCTTGAT+CGG | 0.440406 | 1.4:+5052577 | None:intergenic |
| AAATTACCGTCACGTTATCA+AGG | 0.447446 | 1.4:+5052471 | None:intergenic |
| TGTTCTCAAGCAGAGATTGA+AGG | 0.449530 | 1.4:-5049329 | MS.gene66474:intron |
| GGAAATTTATTATTTAAAAG+TGG | 0.450903 | 1.4:-5051078 | MS.gene66474:CDS |
| CTCATCGGTTACAAATTTCA+AGG | 0.451255 | 1.4:+5052046 | None:intergenic |
| TCTTCATTGTTGCCACTGCT+CGG | 0.459281 | 1.4:+5051879 | None:intergenic |
| CTCAAAAGCTCGGCGAAGAA+AGG | 0.465629 | 1.4:-5052618 | MS.gene66474:CDS |
| GTAAAAGAGGGAAAGGAAGA+AGG | 0.473007 | 1.4:-5052178 | MS.gene66474:CDS |
| GCTGATTCGATGACTTCGCC+TGG | 0.474604 | 1.4:+5052646 | None:intergenic |
| CTTCTTCTTGATCGGCGAGT+TGG | 0.483947 | 1.4:+5052585 | None:intergenic |
| TTGAAATTTGTAACCGATGA+GGG | 0.487322 | 1.4:-5052044 | MS.gene66474:intron |
| AGGTTGAGAAAGAAGAGGAT+GGG | 0.490164 | 1.4:-5049309 | MS.gene66474:CDS |
| TTGAGGTGGATCCACAAAAC+AGG | 0.492021 | 1.4:-5049928 | MS.gene66474:intron |
| GTACATAGTTTGATTGCTCC+AGG | 0.496125 | 1.4:+5050804 | None:intergenic |
| ATTGCACAAGAAAGTAAAAG+AGG | 0.498037 | 1.4:-5052191 | MS.gene66474:CDS |
| AAGGTTGAGAAAGAAGAGGA+TGG | 0.498928 | 1.4:-5049310 | MS.gene66474:CDS |
| ACATTTCCAAAAGCATAATC+GGG | 0.500114 | 1.4:+5051827 | None:intergenic |
| AGCAGTGGCAACAATGAAGA+AGG | 0.504681 | 1.4:-5051876 | MS.gene66474:CDS |
| TCATTACTATTTAACTCCCA+TGG | 0.504757 | 1.4:+5051135 | None:intergenic |
| CAAGAAAGTAAAAGAGGGAA+AGG | 0.504994 | 1.4:-5052185 | MS.gene66474:CDS |
| GGTTGAGAAAGAAGAGGATG+GGG | 0.505171 | 1.4:-5049308 | MS.gene66474:CDS |
| GCAAAAGCATATATAGAGAC+AGG | 0.506388 | 1.4:-5049989 | MS.gene66474:CDS |
| GGGGTGGTGAAAATGGAAAT+GGG | 0.512681 | 1.4:-5049289 | MS.gene66474:CDS |
| TGGATCTTTAGGGGATGATG+AGG | 0.513068 | 1.4:-5050901 | MS.gene66474:CDS |
| GACAGCGCAGCTCCTTCTGA+TGG | 0.517117 | 1.4:-5049256 | MS.gene66474:CDS |
| GCTGGGAGGAAGAAAGAAGA+AGG | 0.524602 | 1.4:-5051099 | MS.gene66474:CDS |
| AACAATGAAGAAGGGTGAAA+GGG | 0.524996 | 1.4:-5051867 | MS.gene66474:CDS |
| AGCAGCGAAGAAGTATGATA+AGG | 0.525722 | 1.4:-5051043 | MS.gene66474:intron |
| AGCGCAGCTCCTTCTGATGG+CGG | 0.535316 | 1.4:-5049253 | MS.gene66474:CDS |
| AAAATTAAACCGCCATCAGA+AGG | 0.538652 | 1.4:+5049244 | None:intergenic |
| AGTAGTGTATGACATTGAAA+TGG | 0.540195 | 1.4:-5051762 | MS.gene66474:CDS |
| AATCGTTGATTGTTTCATGC+TGG | 0.545954 | 1.4:-5050866 | MS.gene66474:CDS |
| TGAGAAAGAAGAGGATGGGG+TGG | 0.548915 | 1.4:-5049305 | MS.gene66474:CDS |
| AGCATAGCTGTGTATCTGAC+TGG | 0.550207 | 1.4:+5052116 | None:intergenic |
| AAAATGGAAATGGGCAATGT+TGG | 0.553546 | 1.4:-5049280 | MS.gene66474:CDS |
| AATTACCGTCACGTTATCAA+GGG | 0.564442 | 1.4:+5052472 | None:intergenic |
| TACACAGCTATGCTAGAAGA+TGG | 0.564478 | 1.4:-5052107 | MS.gene66474:CDS |
| CAACAATGAAGAAGGGTGAA+AGG | 0.574124 | 1.4:-5051868 | MS.gene66474:CDS |
| ATTGTTTCATGCTGGTTGAA+CGG | 0.574242 | 1.4:-5050858 | MS.gene66474:CDS |
| GATGAACTGGATGAAGAACC+AGG | 0.578061 | 1.4:-5052664 | MS.gene66474:CDS |
| TATGTTTGCACCTAAGACAA+AGG | 0.578769 | 1.4:-5049737 | MS.gene66474:intron |
| ATTGAAGGTTGAGAAAGAAG+AGG | 0.580336 | 1.4:-5049314 | MS.gene66474:CDS |
| AAGAATATACTCACCCTCAT+CGG | 0.581459 | 1.4:+5052031 | None:intergenic |
| TCATCGGTTACAAATTTCAA+GGG | 0.583118 | 1.4:+5052047 | None:intergenic |
| TTCATAGGAGAAAGCACCAT+GGG | 0.589750 | 1.4:-5051151 | MS.gene66474:intron |
| AGTGTATGACATTGAAATGG+TGG | 0.597567 | 1.4:-5051759 | MS.gene66474:CDS |
| AGCAATCAAACTATGTACTC+AGG | 0.602316 | 1.4:-5050799 | MS.gene66474:intron |
| TTGCACAAGAAAGTAAAAGA+GGG | 0.603083 | 1.4:-5052190 | MS.gene66474:CDS |
| AGACATCAAGAAAGCTCTTG+AGG | 0.606805 | 1.4:-5049945 | MS.gene66474:CDS |
| TCAGCACCACCTCAAAAGCT+CGG | 0.625877 | 1.4:-5052628 | MS.gene66474:CDS |
| TAGCAGAGATGGATCTTTAG+GGG | 0.626024 | 1.4:-5050910 | MS.gene66474:CDS |
| CATCAAGAAAGCTCTTGAGG+TGG | 0.629058 | 1.4:-5049942 | MS.gene66474:CDS |
| GCAGTGGCAACAATGAAGAA+GGG | 0.633974 | 1.4:-5051875 | MS.gene66474:CDS |
| GATCTTGCTATTGTGCCACC+AGG | 0.635625 | 1.4:-5051791 | MS.gene66474:CDS |
| TACTGGTTTAGACCGAGCAG+TGG | 0.636057 | 1.4:-5051891 | MS.gene66474:CDS |
| CTTGAAATTTGTAACCGATG+AGG | 0.660754 | 1.4:-5052045 | MS.gene66474:CDS |
| CAAAACCAATCAGTAAACAG+TGG | 0.693267 | 1.4:+5052153 | None:intergenic |
| ATTCATAGGAGAAAGCACCA+TGG | 0.695132 | 1.4:-5051152 | MS.gene66474:intron |
| AGCTGTGTATCTGACTGGCA+TGG | 0.717064 | 1.4:+5052121 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAATGTAATATGAT+TGG | + | chr1.4:5051819-5051838 | None:intergenic | 10.0% |
| !!! | ATTGATATTCTTTAATTTAA+AGG | - | chr1.4:5050530-5050549 | MS.gene66474:intron | 10.0% |
| !!! | TTTTTTTACTAAAAGATTAT+TGG | - | chr1.4:5049416-5049435 | MS.gene66474:intron | 10.0% |
| !! | AAATAGTAATGAAAAAATTG+AGG | - | chr1.4:5050798-5050817 | MS.gene66474:intron | 15.0% |
| !! | ACTTAAAAAAATTGTAATTG+AGG | + | chr1.4:5050408-5050427 | None:intergenic | 15.0% |
| !! | ATTGATATTTCATAAATTTG+AGG | + | chr1.4:5050331-5050350 | None:intergenic | 15.0% |
| !! | GGAAATTTATTATTTAAAAG+TGG | - | chr1.4:5050844-5050863 | MS.gene66474:CDS | 15.0% |
| !! | TTGATATTTCATAAATTTGA+GGG | + | chr1.4:5050330-5050349 | None:intergenic | 15.0% |
| !! | TTTATTTGATTCAAATTCAT+AGG | - | chr1.4:5050756-5050775 | MS.gene66474:intron | 15.0% |
| !! | AAATTGAACATTCGATTTAA+GGG | + | chr1.4:5050359-5050378 | None:intergenic | 20.0% |
| !! | ACAAAACAGGTAATTATAAA+TGG | - | chr1.4:5052007-5052026 | MS.gene66474:intron | 20.0% |
| !! | ATAGTTATTATAGAAGTCAA+CGG | - | chr1.4:5049603-5049622 | MS.gene66474:intron | 20.0% |
| !! | TAAATTGAACATTCGATTTA+AGG | + | chr1.4:5050360-5050379 | None:intergenic | 20.0% |
| !! | TATGCTAAAATGAACATTAA+GGG | + | chr1.4:5049499-5049518 | None:intergenic | 20.0% |
| !! | TCATAAACAGTTGATTATAT+GGG | + | chr1.4:5049955-5049974 | None:intergenic | 20.0% |
| !!! | ATTTATAATTACCTGTTTTG+TGG | + | chr1.4:5052008-5052027 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAATTCACGACTT+TGG | - | chr1.4:5050948-5050967 | MS.gene66474:intron | 20.0% |
| !!! | TTTTTTTATATAGACTGTGA+TGG | - | chr1.4:5050250-5050269 | MS.gene66474:intron | 20.0% |
| ! | AAACATGCTTGAAATAATAG+TGG | - | chr1.4:5051340-5051359 | MS.gene66474:intron | 25.0% |
| ! | AACAAAAAACATGTGACATA+AGG | + | chr1.4:5052494-5052513 | None:intergenic | 25.0% |
| ! | AATCCAACAATTAATTTCTC+AGG | + | chr1.4:5052046-5052065 | None:intergenic | 25.0% |
| ! | ACTAATATTACCTTTGTCTT+AGG | + | chr1.4:5052198-5052217 | None:intergenic | 25.0% |
| ! | ACTATTATTTCAAGCATGTT+TGG | + | chr1.4:5051341-5051360 | None:intergenic | 25.0% |
| ! | ACTTATATCATTTACTAGCA+TGG | - | chr1.4:5050635-5050654 | MS.gene66474:intron | 25.0% |
| ! | CATAAACAGTTGATTATATG+GGG | + | chr1.4:5049954-5049973 | None:intergenic | 25.0% |
| ! | GTATGCTAAAATGAACATTA+AGG | + | chr1.4:5049500-5049519 | None:intergenic | 25.0% |
| ! | GTCATAAACAGTTGATTATA+TGG | + | chr1.4:5049956-5049975 | None:intergenic | 25.0% |
| ! | TAGTAATGAAAAAATTGAGG+TGG | - | chr1.4:5050801-5050820 | MS.gene66474:CDS | 25.0% |
| ! | TATAATATTGCAGGACAAAA+AGG | + | chr1.4:5051708-5051727 | None:intergenic | 25.0% |
| ! | TCAAAAGAATAAGTGTGATA+TGG | + | chr1.4:5051864-5051883 | None:intergenic | 25.0% |
| ! | TCAAAGTTGTTGCAAATAAA+GGG | + | chr1.4:5050909-5050928 | None:intergenic | 25.0% |
| ! | TGTATGGGTTTATAACATAA+TGG | - | chr1.4:5051306-5051325 | MS.gene66474:intron | 25.0% |
| ! | TTTAAAGATAGGTTCATGTT+GGG | + | chr1.4:5051476-5051495 | None:intergenic | 25.0% |
| !! | AACATTTCCAAAAGCATAAT+CGG | + | chr1.4:5050099-5050118 | None:intergenic | 25.0% |
| !! | AGGTCTTTCATTAATTTTCA+TGG | - | chr1.4:5050467-5050486 | MS.gene66474:intron | 25.0% |
| !! | GTGGATTTTATTAAGGTAAA+AGG | - | chr1.4:5050182-5050201 | MS.gene66474:intron | 25.0% |
| !! | TTACTCTTAGAATTTAGGTT+GGG | - | chr1.4:5052258-5052277 | MS.gene66474:intron | 25.0% |
| !! | TTGTGTTACTCTTAGAATTT+AGG | - | chr1.4:5052253-5052272 | MS.gene66474:intron | 25.0% |
| !!! | TGAAATGATGGATTTTTTCA+GGG | + | chr1.4:5051560-5051579 | None:intergenic | 25.0% |
| !!! | TGAAATGGTGGATTTTATTA+AGG | - | chr1.4:5050175-5050194 | MS.gene66474:intron | 25.0% |
| !!! | TGTTGATTGTAAGTTTTCAT+TGG | - | chr1.4:5052523-5052542 | MS.gene66474:CDS | 25.0% |
| !!! | TTGAAATGATGGATTTTTTC+AGG | + | chr1.4:5051561-5051580 | None:intergenic | 25.0% |
| !!! | TTGCTACTTTGTAAATTTGA+GGG | - | chr1.4:5050559-5050578 | MS.gene66474:intron | 25.0% |
| !!! | TTTGCTACTTTGTAAATTTG+AGG | - | chr1.4:5050558-5050577 | MS.gene66474:intron | 25.0% |
| AGCTTATCATTATGAGAACA+TGG | - | chr1.4:5052069-5052088 | MS.gene66474:CDS | 30.0% | |
| AGTAGTGTATGACATTGAAA+TGG | - | chr1.4:5050160-5050179 | MS.gene66474:intron | 30.0% | |
| ATCAACTGTTTATGACTTCT+AGG | - | chr1.4:5049960-5049979 | MS.gene66474:CDS | 30.0% | |
| ATGTGGTGTTTATAAAGCTT+GGG | + | chr1.4:5052326-5052345 | None:intergenic | 30.0% | |
| ATTATTTCAAGCATGTTTGG+AGG | + | chr1.4:5051338-5051357 | None:intergenic | 30.0% | |
| ATTGCACAAGAAAGTAAAAG+AGG | - | chr1.4:5049731-5049750 | MS.gene66474:intron | 30.0% | |
| ATTTCATAAATTTGAGGGAC+TGG | + | chr1.4:5050325-5050344 | None:intergenic | 30.0% | |
| CAACATGAACCTATCTTTAA+AGG | - | chr1.4:5051475-5051494 | MS.gene66474:intron | 30.0% | |
| GACTATTTAAGTCAATATGC+AGG | - | chr1.4:5050447-5050466 | MS.gene66474:intron | 30.0% | |
| GTCAAAGTTGTTGCAAATAA+AGG | + | chr1.4:5050910-5050929 | None:intergenic | 30.0% | |
| GTTACTCTTAGAATTTAGGT+TGG | - | chr1.4:5052257-5052276 | MS.gene66474:intron | 30.0% | |
| TCAATGCAAACTTGAAATGA+TGG | + | chr1.4:5051572-5051591 | None:intergenic | 30.0% | |
| TCATTACTATTTAACTCCCA+TGG | + | chr1.4:5050790-5050809 | None:intergenic | 30.0% | |
| TCTCCTGAGAAATTAATTGT+TGG | - | chr1.4:5052040-5052059 | MS.gene66474:intron | 30.0% | |
| TTCATTGTGTTGGATGTTAA+GGG | + | chr1.4:5052382-5052401 | None:intergenic | 30.0% | |
| TTGAAATTTGTAACCGATGA+GGG | - | chr1.4:5049878-5049897 | MS.gene66474:intron | 30.0% | |
| TTGCACAAGAAAGTAAAAGA+GGG | - | chr1.4:5049732-5049751 | MS.gene66474:intron | 30.0% | |
| ! | AACATGGTTTTTCATTTTCC+AGG | - | chr1.4:5052085-5052104 | MS.gene66474:CDS | 30.0% |
| ! | AACTCAACTCCTTTAAAGAT+AGG | + | chr1.4:5051487-5051506 | None:intergenic | 30.0% |
| ! | AAGCTTTATAAACACCACAT+GGG | - | chr1.4:5052326-5052345 | MS.gene66474:intron | 30.0% |
| ! | ACATGGTTTTTCATTTTCCA+GGG | - | chr1.4:5052086-5052105 | MS.gene66474:CDS | 30.0% |
| ! | ACATTTCCAAAAGCATAATC+GGG | + | chr1.4:5050098-5050117 | None:intergenic | 30.0% |
| ! | CTTTAAAGATAGGTTCATGT+TGG | + | chr1.4:5051477-5051496 | None:intergenic | 30.0% |
| ! | TCACACTTATTCTTTTGATC+AGG | - | chr1.4:5051866-5051885 | MS.gene66474:CDS | 30.0% |
| ! | TCATCATTCAGCTTTTAACA+TGG | - | chr1.4:5051770-5051789 | MS.gene66474:CDS | 30.0% |
| ! | TCATCGGTTACAAATTTCAA+GGG | + | chr1.4:5049878-5049897 | None:intergenic | 30.0% |
| !! | AGGAAAAAGTACTAGAAGTA+TGG | - | chr1.4:5049700-5049719 | MS.gene66474:intron | 30.0% |
| !! | TTCATTTTAGCATACCTAGT+GGG | - | chr1.4:5049505-5049524 | MS.gene66474:intron | 30.0% |
| !!! | CTAGTACTTTTTCCTACAAT+AGG | + | chr1.4:5049695-5049714 | None:intergenic | 30.0% |
| AAAATGGAAATGGGCAATGT+TGG | - | chr1.4:5052642-5052661 | MS.gene66474:CDS | 35.0% | |
| AAAATTAAACCGCCATCAGA+AGG | + | chr1.4:5052681-5052700 | None:intergenic | 35.0% | |
| AAATTACCGTCACGTTATCA+AGG | + | chr1.4:5049454-5049473 | None:intergenic | 35.0% | |
| AACAATGAAGAAGGGTGAAA+GGG | - | chr1.4:5050055-5050074 | MS.gene66474:intron | 35.0% | |
| AAGAATATACTCACCCTCAT+CGG | + | chr1.4:5049894-5049913 | None:intergenic | 35.0% | |
| AATGAAAAAATTGAGGTGGC+TGG | - | chr1.4:5050805-5050824 | MS.gene66474:CDS | 35.0% | |
| AATTACCGTCACGTTATCAA+GGG | + | chr1.4:5049453-5049472 | None:intergenic | 35.0% | |
| AGAAGCTTCTCAGAACTATA+AGG | - | chr1.4:5049355-5049374 | MS.gene66474:intron | 35.0% | |
| AGCAATCAAACTATGTACTC+AGG | - | chr1.4:5051123-5051142 | MS.gene66474:CDS | 35.0% | |
| AGGAAATATATCCTCTTCCT+TGG | - | chr1.4:5050202-5050221 | MS.gene66474:intron | 35.0% | |
| AGTCCAGTATAAACGAATTC+AGG | - | chr1.4:5051522-5051541 | MS.gene66474:intron | 35.0% | |
| AGTGTATGACATTGAAATGG+TGG | - | chr1.4:5050163-5050182 | MS.gene66474:intron | 35.0% | |
| ATCCCTGAATTCGTTTATAC+TGG | + | chr1.4:5051528-5051547 | None:intergenic | 35.0% | |
| ATGAAAAAATTGAGGTGGCT+GGG | - | chr1.4:5050806-5050825 | MS.gene66474:CDS | 35.0% | |
| ATGTGACATAAGGTAACTGT+TGG | + | chr1.4:5052484-5052503 | None:intergenic | 35.0% | |
| ATTAACTCGACTTTGATGCT+TGG | + | chr1.4:5051208-5051227 | None:intergenic | 35.0% | |
| ATTGAAGGTTGAGAAAGAAG+AGG | - | chr1.4:5052608-5052627 | MS.gene66474:CDS | 35.0% | |
| ATTGACCTAACAAACTGAAG+AGG | - | chr1.4:5051587-5051606 | MS.gene66474:intron | 35.0% | |
| ATTTGAAAAGCCGATCTGTA+AGG | - | chr1.4:5051387-5051406 | MS.gene66474:intron | 35.0% | |
| CAAAACCAATCAGTAAACAG+TGG | + | chr1.4:5049772-5049791 | None:intergenic | 35.0% | |
| CAAGAAAGTAAAAGAGGGAA+AGG | - | chr1.4:5049737-5049756 | MS.gene66474:intron | 35.0% | |
| CAGGAAAGTCATTCAGTTTA+AGG | + | chr1.4:5051102-5051121 | None:intergenic | 35.0% | |
| CATGTGGTGTTTATAAAGCT+TGG | + | chr1.4:5052327-5052346 | None:intergenic | 35.0% | |
| CTACGAAAAAGTCCTATTGT+AGG | - | chr1.4:5049680-5049699 | MS.gene66474:intron | 35.0% | |
| CTTAAACTGAATGACTTTCC+TGG | - | chr1.4:5051100-5051119 | MS.gene66474:CDS | 35.0% | |
| CTTAACATCCAACACAATGA+AGG | - | chr1.4:5052381-5052400 | MS.gene66474:intron | 35.0% | |
| CTTCATTGTGTTGGATGTTA+AGG | + | chr1.4:5052383-5052402 | None:intergenic | 35.0% | |
| CTTGAAATTTGTAACCGATG+AGG | - | chr1.4:5049877-5049896 | MS.gene66474:intron | 35.0% | |
| GAAACCCAAATACCACAATT+AGG | - | chr1.4:5052424-5052443 | MS.gene66474:intron | 35.0% | |
| GATGTGTCTATCTACATTAG+TGG | - | chr1.4:5050716-5050735 | MS.gene66474:intron | 35.0% | |
| GGAGATAAAAGAAGATGAAC+TGG | - | chr1.4:5049245-5049264 | MS.gene66474:CDS | 35.0% | |
| GTCCAGTATAAACGAATTCA+GGG | - | chr1.4:5051523-5051542 | MS.gene66474:intron | 35.0% | |
| TATGTTTGCACCTAAGACAA+AGG | - | chr1.4:5052185-5052204 | MS.gene66474:CDS | 35.0% | |
| TCATTGTGTTGGATGTTAAG+GGG | + | chr1.4:5052381-5052400 | None:intergenic | 35.0% | |
| TCTGTAGAACAAGTGATTAC+TGG | - | chr1.4:5050014-5050033 | MS.gene66474:CDS | 35.0% | |
| TGGCTACACTTATATAACTC+AGG | + | chr1.4:5051799-5051818 | None:intergenic | 35.0% | |
| TGTCGACAATTACAATTTCG+AGG | - | chr1.4:5050590-5050609 | MS.gene66474:intron | 35.0% | |
| TTAGCAGAGATGGATCTTTA+GGG | - | chr1.4:5051011-5051030 | MS.gene66474:intron | 35.0% | |
| TTCGCCATTGAAAATTGCAA+GGG | - | chr1.4:5050290-5050309 | MS.gene66474:intron | 35.0% | |
| TTTCGCCATTGAAAATTGCA+AGG | - | chr1.4:5050289-5050308 | MS.gene66474:intron | 35.0% | |
| ! | AAAAAGCATGCAAAGGATAG+TGG | + | chr1.4:5049929-5049948 | None:intergenic | 35.0% |
| ! | AATCACCTCTTCAGTTTGTT+AGG | + | chr1.4:5051595-5051614 | None:intergenic | 35.0% |
| ! | AATCGTTGATTGTTTCATGC+TGG | - | chr1.4:5051056-5051075 | MS.gene66474:CDS | 35.0% |
| ! | ATACATCCCGATTATGCTTT+TGG | - | chr1.4:5050089-5050108 | MS.gene66474:intron | 35.0% |
| ! | ATCGGGATGTATACTGATTA+TGG | + | chr1.4:5050081-5050100 | None:intergenic | 35.0% |
| ! | ATTGTTTCATGCTGGTTGAA+CGG | - | chr1.4:5051064-5051083 | MS.gene66474:CDS | 35.0% |
| ! | CAAGCTTTATAAACACCACA+TGG | - | chr1.4:5052325-5052344 | MS.gene66474:intron | 35.0% |
| ! | CTCATCGGTTACAAATTTCA+AGG | + | chr1.4:5049879-5049898 | None:intergenic | 35.0% |
| ! | GCAAAAGCATATATAGAGAC+AGG | - | chr1.4:5051933-5051952 | MS.gene66474:intron | 35.0% |
| ! | TTTTCAATGGCGAAAATGCT+CGG | + | chr1.4:5050284-5050303 | None:intergenic | 35.0% |
| !! | ACAGATCGGCTTTTCAAATT+TGG | + | chr1.4:5051386-5051405 | None:intergenic | 35.0% |
| !! | CAGATCGGCTTTTCAAATTT+GGG | + | chr1.4:5051385-5051404 | None:intergenic | 35.0% |
| !! | GTTCATTTTAGCATACCTAG+TGG | - | chr1.4:5049504-5049523 | MS.gene66474:intron | 35.0% |
| AAAATCAGCAGCCTGAGAAA+TGG | + | chr1.4:5050990-5051009 | None:intergenic | 40.0% | |
| AAACCCATACAATCGTCTTC+AGG | + | chr1.4:5051297-5051316 | None:intergenic | 40.0% | |
| AAATCAGCAGCCTGAGAAAT+GGG | + | chr1.4:5050989-5051008 | None:intergenic | 40.0% | |
| AAGGTTGAGAAAGAAGAGGA+TGG | - | chr1.4:5052612-5052631 | MS.gene66474:CDS | 40.0% | |
| ACCCAAATACCACAATTAGG+CGG | - | chr1.4:5052427-5052446 | MS.gene66474:intron | 40.0% | |
| ACTATGCCAAATGAGTCGAT+TGG | + | chr1.4:5051156-5051175 | None:intergenic | 40.0% | |
| AGACATCAAGAAAGCTCTTG+AGG | - | chr1.4:5051977-5051996 | MS.gene66474:intron | 40.0% | |
| AGGTTGAGAAAGAAGAGGAT+GGG | - | chr1.4:5052613-5052632 | MS.gene66474:CDS | 40.0% | |
| ATGGGTCATATCAAGCAATG+AGG | - | chr1.4:5052344-5052363 | MS.gene66474:intron | 40.0% | |
| ATTGCTTGATATGACCCATG+TGG | + | chr1.4:5052343-5052362 | None:intergenic | 40.0% | |
| CAACAATGAAGAAGGGTGAA+AGG | - | chr1.4:5050054-5050073 | MS.gene66474:intron | 40.0% | |
| CACTGGTGCAAAAGAGTAAA+TGG | - | chr1.4:5051731-5051750 | MS.gene66474:intron | 40.0% | |
| CCAGTGGCTTATAATATTGC+AGG | + | chr1.4:5051717-5051736 | None:intergenic | 40.0% | |
| CCATTGAAAATTGCAAGGGT+GGG | - | chr1.4:5050294-5050313 | MS.gene66474:intron | 40.0% | |
| CCTGCAATATTATAAGCCAC+TGG | - | chr1.4:5051714-5051733 | MS.gene66474:intron | 40.0% | |
| CGAACTCAACCTTACAAAAC+CGG | - | chr1.4:5052282-5052301 | MS.gene66474:intron | 40.0% | |
| CGCTACTAAACCTTACAGAT+CGG | + | chr1.4:5051400-5051419 | None:intergenic | 40.0% | |
| CTGAGAAGCTTCTTCTTGAT+CGG | + | chr1.4:5049348-5049367 | None:intergenic | 40.0% | |
| GGCACTGTATTCGAAAAAAG+AGG | - | chr1.4:5049836-5049855 | MS.gene66474:intron | 40.0% | |
| GTAAAAGAGGGAAAGGAAGA+AGG | - | chr1.4:5049744-5049763 | MS.gene66474:CDS | 40.0% | |
| GTACATAGTTTGATTGCTCC+AGG | + | chr1.4:5051121-5051140 | None:intergenic | 40.0% | |
| GTTAGCAGAGATGGATCTTT+AGG | - | chr1.4:5051010-5051029 | MS.gene66474:intron | 40.0% | |
| TACACAGCTATGCTAGAAGA+TGG | - | chr1.4:5049815-5049834 | MS.gene66474:CDS | 40.0% | |
| TAGCAGAGATGGATCTTTAG+GGG | - | chr1.4:5051012-5051031 | MS.gene66474:intron | 40.0% | |
| TGGGTCATATCAAGCAATGA+GGG | - | chr1.4:5052345-5052364 | MS.gene66474:intron | 40.0% | |
| TGTTCTCAAGCAGAGATTGA+AGG | - | chr1.4:5052593-5052612 | MS.gene66474:CDS | 40.0% | |
| TTCCATGATACCCATTTCTC+AGG | - | chr1.4:5050976-5050995 | MS.gene66474:intron | 40.0% | |
| ! | AAACAGCCAATCGACTCATT+TGG | - | chr1.4:5051147-5051166 | MS.gene66474:CDS | 40.0% |
| ! | ACAACAAGTCTTTTCCCACT+AGG | + | chr1.4:5049522-5049541 | None:intergenic | 40.0% |
| ! | AGCAGCGAAGAAGTATGATA+AGG | - | chr1.4:5050879-5050898 | MS.gene66474:CDS | 40.0% |
| ! | AGCGAAGAAGTATGATAAGG+TGG | - | chr1.4:5050882-5050901 | MS.gene66474:CDS | 40.0% |
| ! | ATCCAACACAATGAAGGTGT+TGG | - | chr1.4:5052387-5052406 | MS.gene66474:intron | 40.0% |
| ! | CATTTACTCTTTTGCACCAG+TGG | + | chr1.4:5051733-5051752 | None:intergenic | 40.0% |
| ! | CTTTGAGGAATTGGAGATCT+AGG | - | chr1.4:5050227-5050246 | MS.gene66474:intron | 40.0% |
| ! | GTTTATACTGGACTCTGAGA+TGG | + | chr1.4:5051516-5051535 | None:intergenic | 40.0% |
| ! | TGGGGTAAAAAAGCATGCAA+AGG | + | chr1.4:5049936-5049955 | None:intergenic | 40.0% |
| ! | TGGTTTTTCATTTTCCAGGG+AGG | - | chr1.4:5052089-5052108 | MS.gene66474:CDS | 40.0% |
| ! | TTCATTTTCCAGGGAGGTAA+AGG | - | chr1.4:5052095-5052114 | MS.gene66474:CDS | 40.0% |
| !! | ATTCATAGGAGAAAGCACCA+TGG | - | chr1.4:5050770-5050789 | MS.gene66474:intron | 40.0% |
| !! | GCTGATTTTGTTAGCAGAGA+TGG | - | chr1.4:5051001-5051020 | MS.gene66474:intron | 40.0% |
| !! | TCAAACCCTTGATAACGTGA+CGG | - | chr1.4:5049445-5049464 | MS.gene66474:intron | 40.0% |
| !! | TCATACACTACTTTTGAGCC+TGG | + | chr1.4:5050152-5050171 | None:intergenic | 40.0% |
| !! | TTCATAGGAGAAAGCACCAT+GGG | - | chr1.4:5050771-5050790 | MS.gene66474:intron | 40.0% |
| !!! | TGTTGCTGCTTTTGTCGAAA+AGG | - | chr1.4:5049539-5049558 | MS.gene66474:intron | 40.0% |
| AAAAAATTGAGGTGGCTGGG+AGG | - | chr1.4:5050809-5050828 | MS.gene66474:CDS | 45.0% | |
| AATACCACAATTAGGCGGCT+AGG | - | chr1.4:5052432-5052451 | MS.gene66474:intron | 45.0% | |
| AGCAGTGGCAACAATGAAGA+AGG | - | chr1.4:5050046-5050065 | MS.gene66474:intron | 45.0% | |
| AGCATAGCTGTGTATCTGAC+TGG | + | chr1.4:5049809-5049828 | None:intergenic | 45.0% | |
| AGCCGCCTAATTGTGGTATT+TGG | + | chr1.4:5052432-5052451 | None:intergenic | 45.0% | |
| AGCCTGAGAAATGGGTATCA+TGG | + | chr1.4:5050981-5051000 | None:intergenic | 45.0% | |
| AGGAGCCACTGTTTACTGAT+TGG | - | chr1.4:5049764-5049783 | MS.gene66474:CDS | 45.0% | |
| ATACCACAATTAGGCGGCTA+GGG | - | chr1.4:5052433-5052452 | MS.gene66474:intron | 45.0% | |
| CATACCAGACCAGAAGACTT+CGG | + | chr1.4:5051621-5051640 | None:intergenic | 45.0% | |
| CATCAAGAAAGCTCTTGAGG+TGG | - | chr1.4:5051980-5051999 | MS.gene66474:intron | 45.0% | |
| CTCCAACACCTTCATTGTGT+TGG | + | chr1.4:5052392-5052411 | None:intergenic | 45.0% | |
| CTTTAGTACCTTTACCTCCC+TGG | + | chr1.4:5052106-5052125 | None:intergenic | 45.0% | |
| GAGCCTGAAGACGATTGTAT+GGG | - | chr1.4:5051291-5051310 | MS.gene66474:intron | 45.0% | |
| GATGAACTGGATGAAGAACC+AGG | - | chr1.4:5049258-5049277 | MS.gene66474:CDS | 45.0% | |
| GCAGTGGCAACAATGAAGAA+GGG | - | chr1.4:5050047-5050066 | MS.gene66474:intron | 45.0% | |
| GCCATTGAAAATTGCAAGGG+TGG | - | chr1.4:5050293-5050312 | MS.gene66474:intron | 45.0% | |
| GCCGCCTAATTGTGGTATTT+GGG | + | chr1.4:5052431-5052450 | None:intergenic | 45.0% | |
| GGGGTGGTGAAAATGGAAAT+GGG | - | chr1.4:5052633-5052652 | MS.gene66474:CDS | 45.0% | |
| GGTTGAGAAAGAAGAGGATG+GGG | - | chr1.4:5052614-5052633 | MS.gene66474:CDS | 45.0% | |
| GTGATTGAACCGAAGTCTTC+TGG | - | chr1.4:5051609-5051628 | MS.gene66474:intron | 45.0% | |
| TCTTCATTGTTGCCACTGCT+CGG | + | chr1.4:5050046-5050065 | None:intergenic | 45.0% | |
| TGGGATCTTAGATGCATCAG+TGG | + | chr1.4:5051457-5051476 | None:intergenic | 45.0% | |
| TGGGGTGGTGAAAATGGAAA+TGG | - | chr1.4:5052632-5052651 | MS.gene66474:CDS | 45.0% | |
| TTGAGGTGGATCCACAAAAC+AGG | - | chr1.4:5051994-5052013 | MS.gene66474:intron | 45.0% | |
| TTGTGTTGGATGTTAAGGGG+TGG | + | chr1.4:5052378-5052397 | None:intergenic | 45.0% | |
| ! | CCCACCCTTGCAATTTTCAA+TGG | + | chr1.4:5050297-5050316 | None:intergenic | 45.0% |
| ! | TCCAATTCCTCAAAGCACCA+AGG | + | chr1.4:5050222-5050241 | None:intergenic | 45.0% |
| ! | TGGATCTTTAGGGGATGATG+AGG | - | chr1.4:5051021-5051040 | MS.gene66474:intron | 45.0% |
| !! | AAAACCGGCTTGTAAGGTGA+GGG | - | chr1.4:5052297-5052316 | MS.gene66474:intron | 45.0% |
| !! | CAACACAATGAAGGTGTTGG+AGG | - | chr1.4:5052390-5052409 | MS.gene66474:intron | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr1.4:5052291-5052310 | MS.gene66474:intron | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr1.4:5052294-5052313 | None:intergenic | 45.0% |
| !! | TACACTACTTTTGAGCCTGG+TGG | + | chr1.4:5050149-5050168 | None:intergenic | 45.0% |
| !! | TCCTTGGTGCTTTGAGGAAT+TGG | - | chr1.4:5050218-5050237 | MS.gene66474:intron | 45.0% |
| !!! | ATTACATTTATTATTATTTT+AGG | - | chr1.4:5051824-5051843 | MS.gene66474:CDS | 5.0% |
| AGAGGATGGGGTGGTGAAAA+TGG | - | chr1.4:5052626-5052645 | MS.gene66474:CDS | 50.0% | |
| AGCTGTGTATCTGACTGGCA+TGG | + | chr1.4:5049804-5049823 | None:intergenic | 50.0% | |
| CGAAGTCTTCTGGTCTGGTA+TGG | - | chr1.4:5051619-5051638 | MS.gene66474:intron | 50.0% | |
| CGAGCCTGAAGACGATTGTA+TGG | - | chr1.4:5051290-5051309 | MS.gene66474:intron | 50.0% | |
| CTCAAAAGCTCGGCGAAGAA+AGG | - | chr1.4:5049304-5049323 | MS.gene66474:CDS | 50.0% | |
| CTTCTTCTTGATCGGCGAGT+TGG | + | chr1.4:5049340-5049359 | None:intergenic | 50.0% | |
| GCTGGGAGGAAGAAAGAAGA+AGG | - | chr1.4:5050823-5050842 | MS.gene66474:CDS | 50.0% | |
| TCAGCACCACCTCAAAAGCT+CGG | - | chr1.4:5049294-5049313 | MS.gene66474:CDS | 50.0% | |
| TGAACCGAAGTCTTCTGGTC+TGG | - | chr1.4:5051614-5051633 | MS.gene66474:intron | 50.0% | |
| TGAGAAAGAAGAGGATGGGG+TGG | - | chr1.4:5052617-5052636 | MS.gene66474:CDS | 50.0% | |
| TGGCAATTCCGCCTTCATTG+CGG | + | chr1.4:5052464-5052483 | None:intergenic | 50.0% | |
| ! | CTTTCTTCGCCGAGCTTTTG+AGG | + | chr1.4:5049306-5049325 | None:intergenic | 50.0% |
| ! | GGTGTTGGAGGTTGCAATGA+AGG | - | chr1.4:5052402-5052421 | MS.gene66474:intron | 50.0% |
| ! | TCCTCAAAGCACCAAGGAAG+AGG | + | chr1.4:5050216-5050235 | None:intergenic | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr1.4:5052296-5052315 | MS.gene66474:intron | 50.0% |
| !! | GATCTTGCTATTGTGCCACC+AGG | - | chr1.4:5050131-5050150 | MS.gene66474:intron | 50.0% |
| !! | TACTGGTTTAGACCGAGCAG+TGG | - | chr1.4:5050031-5050050 | MS.gene66474:CDS | 50.0% |
| !! | TCCTCTTCCTTGGTGCTTTG+AGG | - | chr1.4:5050212-5050231 | MS.gene66474:intron | 50.0% |
| CACAATTAGGCGGCTAGGGA+CGG | - | chr1.4:5052437-5052456 | MS.gene66474:intron | 55.0% | |
| GCAACCCTCACCTTACAAGC+CGG | + | chr1.4:5052304-5052323 | None:intergenic | 55.0% | |
| !! | GCTGATTCGATGACTTCGCC+TGG | + | chr1.4:5049279-5049298 | None:intergenic | 55.0% |
| !! | TCTTCGCCGAGCTTTTGAGG+TGG | + | chr1.4:5049303-5049322 | None:intergenic | 55.0% |
| AGCGCAGCTCCTTCTGATGG+CGG | - | chr1.4:5052669-5052688 | MS.gene66474:CDS | 60.0% | |
| CGTCCCTAGCCGCCTAATTG+TGG | + | chr1.4:5052439-5052458 | None:intergenic | 60.0% | |
| CTAGGGACGGACCGCAATGA+AGG | - | chr1.4:5052450-5052469 | MS.gene66474:intron | 60.0% | |
| GACAGCGCAGCTCCTTCTGA+TGG | - | chr1.4:5052666-5052685 | MS.gene66474:CDS | 60.0% | |
| GGGACGGACCGCAATGAAGG+CGG | - | chr1.4:5052453-5052472 | MS.gene66474:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 5049231 | 5052713 | 5049231 | ID=MS.gene66474 |
| chr1.4 | mRNA | 5049231 | 5052713 | 5049231 | ID=MS.gene66474.t1;Parent=MS.gene66474 |
| chr1.4 | exon | 5052484 | 5052713 | 5052484 | ID=MS.gene66474.t1.exon1;Parent=MS.gene66474.t1 |
| chr1.4 | CDS | 5052484 | 5052713 | 5052484 | ID=cds.MS.gene66474.t1;Parent=MS.gene66474.t1 |
| chr1.4 | exon | 5052045 | 5052253 | 5052045 | ID=MS.gene66474.t1.exon2;Parent=MS.gene66474.t1 |
| chr1.4 | CDS | 5052045 | 5052253 | 5052045 | ID=cds.MS.gene66474.t1;Parent=MS.gene66474.t1 |
| chr1.4 | exon | 5051748 | 5051923 | 5051748 | ID=MS.gene66474.t1.exon3;Parent=MS.gene66474.t1 |
| chr1.4 | CDS | 5051748 | 5051923 | 5051748 | ID=cds.MS.gene66474.t1;Parent=MS.gene66474.t1 |
| chr1.4 | exon | 5051044 | 5051166 | 5051044 | ID=MS.gene66474.t1.exon4;Parent=MS.gene66474.t1 |
| chr1.4 | CDS | 5051044 | 5051166 | 5051044 | ID=cds.MS.gene66474.t1;Parent=MS.gene66474.t1 |
| chr1.4 | exon | 5050800 | 5050946 | 5050800 | ID=MS.gene66474.t1.exon5;Parent=MS.gene66474.t1 |
| chr1.4 | CDS | 5050800 | 5050946 | 5050800 | ID=cds.MS.gene66474.t1;Parent=MS.gene66474.t1 |
| chr1.4 | exon | 5049929 | 5050056 | 5049929 | ID=MS.gene66474.t1.exon6;Parent=MS.gene66474.t1 |
| chr1.4 | CDS | 5049929 | 5050056 | 5049929 | ID=cds.MS.gene66474.t1;Parent=MS.gene66474.t1 |
| chr1.4 | exon | 5049738 | 5049837 | 5049738 | ID=MS.gene66474.t1.exon7;Parent=MS.gene66474.t1 |
| chr1.4 | CDS | 5049738 | 5049837 | 5049738 | ID=cds.MS.gene66474.t1;Parent=MS.gene66474.t1 |
| chr1.4 | exon | 5049231 | 5049338 | 5049231 | ID=MS.gene66474.t1.exon8;Parent=MS.gene66474.t1 |
| chr1.4 | CDS | 5049231 | 5049338 | 5049231 | ID=cds.MS.gene66474.t1;Parent=MS.gene66474.t1 |
| Gene Sequence |
| Protein sequence |
