Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35967.t1 | XP_003628363.1 | 97.6 | 336 | 8 | 0 | 1 | 336 | 1 | 336 | 1.50E-178 | 635.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35967.t1 | Q3KQ45 | 27.6 | 319 | 221 | 7 | 7 | 322 | 8 | 319 | 6.3e-24 | 113.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35967.t1 | G7LA57 | 97.6 | 336 | 8 | 0 | 1 | 336 | 1 | 336 | 1.1e-178 | 635.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene35967 | 0.813891 | 2.03E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene35967 | 0.838592 | 2.62E-57 | -1.69E-46 |
| MS.gene049343 | MS.gene35967 | 0.818365 | 2.04E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene35967 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene35967 | 0.830584 | 2.70E-55 | -1.69E-46 |
| MS.gene049435 | MS.gene35967 | 0.824035 | 1.00E-53 | -1.69E-46 |
| MS.gene049501 | MS.gene35967 | 0.812599 | 3.91E-51 | -1.69E-46 |
| MS.gene049647 | MS.gene35967 | 0.805281 | 1.44E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene35967 | 0.805578 | 1.25E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene35967 | 0.806884 | 6.62E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene35967 | 0.83981 | 1.27E-57 | -1.69E-46 |
| MS.gene049873 | MS.gene35967 | 0.808517 | 2.98E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene35967 | 0.829463 | 5.08E-55 | -1.69E-46 |
| MS.gene05016 | MS.gene35967 | 0.814666 | 1.37E-51 | -1.69E-46 |
| MS.gene050201 | MS.gene35967 | 0.806032 | 1.00E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene35967 | 0.801718 | 7.89E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene35967 | 0.818657 | 1.75E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene35967 | 0.812342 | 4.45E-51 | -1.69E-46 |
| MS.gene050303 | MS.gene35967 | 0.821255 | 4.45E-53 | -1.69E-46 |
| MS.gene050355 | MS.gene35967 | 0.8184 | 2.00E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene35967 | 0.858612 | 7.31E-63 | -1.69E-46 |
| MS.gene050559 | MS.gene35967 | 0.827968 | 1.17E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene35967 | 0.829158 | 6.02E-55 | -1.69E-46 |
| MS.gene050562 | MS.gene35967 | 0.813661 | 2.29E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene35967 | 0.80118 | 1.02E-48 | -1.69E-46 |
| MS.gene050719 | MS.gene35967 | 0.837471 | 5.10E-57 | -1.69E-46 |
| MS.gene050721 | MS.gene35967 | 0.834047 | 3.76E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene35967 | 0.831191 | 1.92E-55 | -1.69E-46 |
| MS.gene050750 | MS.gene35967 | 0.830668 | 2.58E-55 | -1.69E-46 |
| MS.gene050759 | MS.gene35967 | 0.807577 | 4.72E-50 | -1.69E-46 |
| MS.gene050799 | MS.gene35967 | 0.800536 | 1.38E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene35967 | 0.804802 | 1.81E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene35967 | 0.827265 | 1.72E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene35967 | 0.81985 | 9.35E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene35967 | 0.802106 | 6.57E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene35967 | 0.816933 | 4.28E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene35967 | 0.834357 | 3.14E-56 | -1.69E-46 |
| MS.gene052012 | MS.gene35967 | 0.835912 | 1.27E-56 | -1.69E-46 |
| MS.gene052108 | MS.gene35967 | 0.81576 | 7.84E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene35967 | 0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene35967 | 0.831039 | 2.09E-55 | -1.69E-46 |
| MS.gene052323 | MS.gene35967 | 0.826422 | 2.74E-54 | -1.69E-46 |
| MS.gene052333 | MS.gene35967 | 0.828485 | 8.76E-55 | -1.69E-46 |
| MS.gene052384 | MS.gene35967 | 0.809762 | 1.61E-50 | -1.69E-46 |
| MS.gene052488 | MS.gene35967 | 0.810147 | 1.33E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene35967 | 0.850588 | 1.54E-60 | -1.69E-46 |
| MS.gene052582 | MS.gene35967 | 0.838799 | 2.32E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene35967 | 0.838783 | 2.34E-57 | -1.69E-46 |
| MS.gene052611 | MS.gene35967 | 0.807363 | 5.24E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene35967 | 0.823202 | 1.57E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene35967 | 0.816887 | 4.39E-52 | -1.69E-46 |
| MS.gene052867 | MS.gene35967 | 0.814309 | 1.65E-51 | -1.69E-46 |
| MS.gene052926 | MS.gene35967 | 0.834708 | 2.56E-56 | -1.69E-46 |
| MS.gene052954 | MS.gene35967 | 0.811203 | 7.87E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene35967 | 0.839485 | 1.54E-57 | -1.69E-46 |
| MS.gene053054 | MS.gene35967 | -0.843281 | 1.54E-58 | -1.69E-46 |
| MS.gene053166 | MS.gene35967 | 0.848948 | 4.43E-60 | -1.69E-46 |
| MS.gene053201 | MS.gene35967 | 0.814571 | 1.44E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene35967 | 0.804402 | 2.20E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene35967 | 0.861264 | 1.16E-63 | -1.69E-46 |
| MS.gene053565 | MS.gene35967 | 0.815714 | 8.03E-52 | -1.69E-46 |
| MS.gene053953 | MS.gene35967 | 0.81121 | 7.85E-51 | -1.69E-46 |
| MS.gene054139 | MS.gene35967 | 0.812985 | 3.22E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene35967 | 0.847623 | 1.03E-59 | -1.69E-46 |
| MS.gene054291 | MS.gene35967 | -0.819929 | 8.97E-53 | -1.69E-46 |
| MS.gene054405 | MS.gene35967 | 0.808318 | 3.29E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene35967 | 0.844654 | 6.61E-59 | -1.69E-46 |
| MS.gene054559 | MS.gene35967 | 0.832429 | 9.50E-56 | -1.69E-46 |
| MS.gene054576 | MS.gene35967 | 0.822246 | 2.62E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene35967 | 0.836803 | 7.55E-57 | -1.69E-46 |
| MS.gene054657 | MS.gene35967 | 0.855002 | 8.45E-62 | -1.69E-46 |
| MS.gene054775 | MS.gene35967 | 0.806344 | 8.61E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene35967 | 0.818395 | 2.00E-52 | -1.69E-46 |
| MS.gene055166 | MS.gene35967 | 0.832663 | 8.31E-56 | -1.69E-46 |
| MS.gene05517 | MS.gene35967 | 0.812067 | 5.11E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene35967 | 0.831843 | 1.33E-55 | -1.69E-46 |
| MS.gene055356 | MS.gene35967 | 0.808605 | 2.85E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene35967 | 0.80617 | 9.37E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene35967 | 0.801126 | 1.04E-48 | -1.69E-46 |
| MS.gene055512 | MS.gene35967 | 0.830268 | 3.23E-55 | -1.69E-46 |
| MS.gene055586 | MS.gene35967 | 0.803769 | 2.98E-49 | -1.69E-46 |
| MS.gene055589 | MS.gene35967 | 0.822494 | 2.30E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene35967 | 0.833607 | 4.84E-56 | -1.69E-46 |
| MS.gene055701 | MS.gene35967 | 0.817586 | 3.05E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene35967 | 0.829262 | 5.68E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene35967 | 0.860272 | 2.32E-63 | -1.69E-46 |
| MS.gene055841 | MS.gene35967 | 0.804985 | 1.66E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene35967 | 0.818696 | 1.71E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene35967 | 0.844997 | 5.34E-59 | -1.69E-46 |
| MS.gene056050 | MS.gene35967 | 0.817295 | 3.55E-52 | -1.69E-46 |
| MS.gene056162 | MS.gene35967 | 0.827186 | 1.80E-54 | -1.69E-46 |
| MS.gene056173 | MS.gene35967 | 0.824036 | 1.00E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene35967 | 0.812833 | 3.47E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene35967 | 0.862594 | 4.54E-64 | -1.69E-46 |
| MS.gene056373 | MS.gene35967 | 0.806944 | 6.43E-50 | -1.69E-46 |
| MS.gene056498 | MS.gene35967 | 0.827957 | 1.17E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene35967 | 0.876534 | 1.29E-68 | -1.69E-46 |
| MS.gene056553 | MS.gene35967 | 0.813009 | 3.18E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene35967 | 0.811619 | 6.39E-51 | -1.69E-46 |
| MS.gene056643 | MS.gene35967 | 0.810928 | 9.03E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene35967 | 0.829606 | 4.69E-55 | -1.69E-46 |
| MS.gene056779 | MS.gene35967 | 0.812862 | 3.42E-51 | -1.69E-46 |
| MS.gene056952 | MS.gene35967 | 0.800237 | 1.58E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene35967 | 0.84889 | 4.59E-60 | -1.69E-46 |
| MS.gene057034 | MS.gene35967 | 0.802669 | 5.03E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene35967 | 0.85759 | 1.47E-62 | -1.69E-46 |
| MS.gene057200 | MS.gene35967 | 0.814699 | 1.35E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene35967 | 0.812797 | 3.54E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene35967 | 0.813407 | 2.60E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene35967 | 0.84046 | 8.58E-58 | -1.69E-46 |
| MS.gene057444 | MS.gene35967 | 0.850115 | 2.09E-60 | -1.69E-46 |
| MS.gene057555 | MS.gene35967 | 0.801762 | 7.73E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene35967 | 0.805155 | 1.53E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene35967 | 0.808486 | 3.02E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene35967 | 0.822376 | 2.45E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene35967 | 0.812509 | 4.09E-51 | -1.69E-46 |
| MS.gene05795 | MS.gene35967 | 0.802099 | 6.59E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene35967 | 0.811615 | 6.41E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene35967 | 0.80978 | 1.60E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene35967 | 0.814956 | 1.18E-51 | -1.69E-46 |
| MS.gene05847 | MS.gene35967 | 0.802941 | 4.42E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene35967 | 0.83408 | 3.68E-56 | -1.69E-46 |
| MS.gene058549 | MS.gene35967 | 0.820714 | 5.93E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene35967 | 0.837249 | 5.81E-57 | -1.69E-46 |
| MS.gene058636 | MS.gene35967 | 0.809445 | 1.89E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene35967 | 0.853588 | 2.16E-61 | -1.69E-46 |
| MS.gene058979 | MS.gene35967 | 0.836221 | 1.06E-56 | -1.69E-46 |
| MS.gene059161 | MS.gene35967 | 0.808898 | 2.47E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene35967 | 0.830549 | 2.76E-55 | -1.69E-46 |
| MS.gene059569 | MS.gene35967 | 0.837298 | 5.64E-57 | -1.69E-46 |
| MS.gene059607 | MS.gene35967 | 0.817138 | 3.85E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene35967 | 0.803651 | 3.15E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene35967 | 0.832277 | 1.04E-55 | -1.69E-46 |
| MS.gene059842 | MS.gene35967 | 0.801269 | 9.75E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene35967 | -0.805167 | 1.52E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene35967 | 0.838172 | 3.37E-57 | -1.69E-46 |
| MS.gene060429 | MS.gene35967 | 0.810035 | 1.41E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene35967 | 0.841624 | 4.24E-58 | -1.69E-46 |
| MS.gene060572 | MS.gene35967 | 0.890123 | 1.31E-73 | -1.69E-46 |
| MS.gene060587 | MS.gene35967 | 0.801525 | 8.64E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene35967 | -0.819442 | 1.16E-52 | -1.69E-46 |
| MS.gene060690 | MS.gene35967 | 0.815285 | 1.00E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene35967 | 0.804528 | 2.07E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene35967 | 0.825225 | 5.26E-54 | -1.69E-46 |
| MS.gene060907 | MS.gene35967 | 0.824686 | 7.06E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene35967 | 0.80515 | 1.53E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene35967 | -0.815771 | 7.79E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35967.t1 | MTR_8g055880 | 97.619 | 336 | 8 | 0 | 1 | 336 | 1 | 336 | 0.0 | 669 |
| MS.gene35967.t1 | MTR_8g055880 | 97.647 | 255 | 6 | 0 | 82 | 336 | 1 | 255 | 0.0 | 516 |
| MS.gene35967.t1 | MTR_8g055880 | 97.071 | 239 | 7 | 0 | 1 | 239 | 1 | 239 | 2.13e-169 | 473 |
| MS.gene35967.t1 | MTR_8g055880 | 97.479 | 238 | 6 | 0 | 1 | 238 | 1 | 238 | 2.99e-169 | 472 |
| MS.gene35967.t1 | MTR_8g055880 | 91.102 | 236 | 20 | 1 | 101 | 336 | 3 | 237 | 1.60e-154 | 435 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35967.t1 | AT1G14300 | 71.976 | 339 | 95 | 0 | 1 | 339 | 1 | 339 | 2.80e-177 | 496 |
| MS.gene35967.t1 | AT1G14300 | 64.987 | 377 | 94 | 1 | 1 | 339 | 1 | 377 | 3.64e-170 | 480 |
Find 89 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACTTGAGTGCGAATTTC+TGG | 0.188990 | 8.2:-41334782 | None:intergenic |
| CGAATTTCTGGATCATTAAC+AGG | 0.275821 | 8.2:-41334770 | None:intergenic |
| TCGTTTGCTTGTTATGCTTT+TGG | 0.276364 | 8.2:+41332072 | MS.gene35967:CDS |
| TAACCGACTTGGACTATTCT+AGG | 0.276381 | 8.2:-41337339 | None:intergenic |
| TCATACGCTCCCATCACTTT+TGG | 0.288944 | 8.2:-41337378 | None:intergenic |
| CTTTGTGATGTTAACAAGTA+TGG | 0.309114 | 8.2:-41333111 | None:intergenic |
| CATATACTTGATCTTATTGC+AGG | 0.326191 | 8.2:+41334811 | MS.gene35967:CDS |
| GACATAGTTCGCGGATTTAC+CGG | 0.331706 | 8.2:+41330961 | MS.gene35967:CDS |
| TGGTACTGATTCCTTGCTTC+AGG | 0.336668 | 8.2:+41332117 | MS.gene35967:CDS |
| TCAGCTACAGAATTTGCTTT+TGG | 0.342043 | 8.2:+41333924 | MS.gene35967:CDS |
| CTGCAATAAGATCAAGTATA+TGG | 0.360937 | 8.2:-41334810 | None:intergenic |
| AGATACTGAAACGGAGTCTT+TGG | 0.363699 | 8.2:-41337899 | None:intergenic |
| CTGGCCTGCATTACTTCTTC+CGG | 0.363720 | 8.2:+41333960 | MS.gene35967:CDS |
| TGTTTCAAGAGACCCCGTTT+TGG | 0.375889 | 8.2:-41333164 | None:intergenic |
| GGCTTTGTCCCGTCTCTTAA+CGG | 0.395262 | 8.2:+41331035 | MS.gene35967:CDS |
| AGGCAGGTCGAAGAGCCTTT+TGG | 0.400322 | 8.2:+41337304 | MS.gene35967:CDS |
| CAAATTCTGTAGCTGATTCT+CGG | 0.403605 | 8.2:-41333917 | None:intergenic |
| GCTTCTACTCGACCCAAAAC+GGG | 0.420535 | 8.2:+41333151 | MS.gene35967:CDS |
| AGCTTCTACTCGACCCAAAA+CGG | 0.435211 | 8.2:+41333150 | MS.gene35967:CDS |
| TGATATTGCTATCAGGTCTC+TGG | 0.439026 | 8.2:+41333868 | MS.gene35967:intron |
| AGAGTGTATAACCTTGTTGC+CGG | 0.449596 | 8.2:-41333986 | None:intergenic |
| CACAAAGCAGCGGGCAGGGA+GGG | 0.451872 | 8.2:+41333127 | MS.gene35967:CDS |
| AACAGCTCATTGAGAAAGAA+AGG | 0.453988 | 8.2:+41333209 | MS.gene35967:CDS |
| ATCCAGTTGGTTAACGGCAG+CGG | 0.457409 | 8.2:+41337534 | MS.gene35967:intron |
| AGAAATCATCGTAAAGAAGA+TGG | 0.460362 | 8.2:-41337864 | None:intergenic |
| GGAGTCTTTGGCACAGGCAA+TGG | 0.466779 | 8.2:-41337887 | None:intergenic |
| AACATCACAAAGCAGCGGGC+AGG | 0.468910 | 8.2:+41333122 | MS.gene35967:CDS |
| CCTCATCTTCGTAACCGACT+TGG | 0.469208 | 8.2:-41337350 | None:intergenic |
| GTTGGTTAACGGCAGCGGTA+TGG | 0.481170 | 8.2:+41337539 | MS.gene35967:intron |
| AGAAATTCGCACTCAAGTAT+TGG | 0.484616 | 8.2:+41334784 | MS.gene35967:CDS |
| TTCGAATCTTGCGGAGGAGA+TGG | 0.490479 | 8.2:+41331988 | MS.gene35967:CDS |
| AGGCCCATTTACAGACCAAA+AGG | 0.505026 | 8.2:-41337319 | None:intergenic |
| ATAACCTTGTTGCCGGCTAC+CGG | 0.509222 | 8.2:-41333979 | None:intergenic |
| GTATGAGCAACTAGGATCCT+TGG | 0.516650 | 8.2:+41337395 | MS.gene35967:CDS |
| ATGTATGCCTTCCTCGGAGC+CGG | 0.517078 | 8.2:-41330980 | None:intergenic |
| ACAGCTCATTGAGAAAGAAA+GGG | 0.517237 | 8.2:+41333210 | MS.gene35967:CDS |
| CTTGGGCGCCGTTAAGAGAC+GGG | 0.520454 | 8.2:-41331043 | None:intergenic |
| GCATTACTTCTTCCGGTAGC+CGG | 0.527530 | 8.2:+41333967 | MS.gene35967:CDS |
| TGAGGAAGATCCAAAAGTGA+TGG | 0.528777 | 8.2:+41337368 | MS.gene35967:CDS |
| CCGTCTCTTAACGGCGCCCA+AGG | 0.529377 | 8.2:+41331044 | MS.gene35967:CDS |
| TACTCTGTCGTCTCAGTGGA+TGG | 0.536104 | 8.2:-41337567 | None:intergenic |
| CTTATCTTCTCCATCACCAC+AGG | 0.538535 | 8.2:+41330818 | MS.gene35967:CDS |
| GAAATCATCGTAAAGAAGAT+GGG | 0.551158 | 8.2:-41337863 | None:intergenic |
| CCTTGGGCGCCGTTAAGAGA+CGG | 0.553235 | 8.2:-41331044 | None:intergenic |
| TGATTGATTACCTGTGGTGA+TGG | 0.557068 | 8.2:-41330828 | None:intergenic |
| GGATTTACCGGCTCCGAGGA+AGG | 0.557120 | 8.2:+41330973 | MS.gene35967:CDS |
| AATCTCACTCAACTTGATGC+TGG | 0.559771 | 8.2:+41332097 | MS.gene35967:CDS |
| TAAAGAATGTATGCCTTCCT+CGG | 0.559797 | 8.2:-41330986 | None:intergenic |
| GCTACCGGAAGAAGTAATGC+AGG | 0.562221 | 8.2:-41333964 | None:intergenic |
| TTCGCAAAATTCGAATCTTG+CGG | 0.563174 | 8.2:+41331979 | MS.gene35967:CDS |
| GATGGTTCAGACGAGACTTG+TGG | 0.578200 | 8.2:+41332006 | MS.gene35967:CDS |
| GAGGAAGATCCAAAAGTGAT+GGG | 0.580154 | 8.2:+41337369 | MS.gene35967:CDS |
| GTTGTTTCAGGAAGTTTCTG+AGG | 0.582122 | 8.2:+41331931 | MS.gene35967:intron |
| GTAGTAAGAAAGAATGGCGA+CGG | 0.584809 | 8.2:+41330773 | None:intergenic |
| ACATCACAAAGCAGCGGGCA+GGG | 0.590651 | 8.2:+41333123 | MS.gene35967:CDS |
| TGTTAACATCACAAAGCAGC+GGG | 0.593385 | 8.2:+41333118 | MS.gene35967:CDS |
| CCACCTCTGAGATACTGAAA+CGG | 0.594871 | 8.2:-41337908 | None:intergenic |
| TATATGTTATGAAGCTTGTG+AGG | 0.597267 | 8.2:+41332637 | MS.gene35967:CDS |
| GCTGCCGTTGACATAGTTCG+CGG | 0.598021 | 8.2:+41330952 | MS.gene35967:CDS |
| CATCGTAAAGAAGATGGGTG+AGG | 0.603979 | 8.2:-41337858 | None:intergenic |
| TTGCCTCATTGTACGCGTGG+TGG | 0.604456 | 8.2:-41337934 | None:intergenic |
| AGTGCAGTCCCAAGTTCAAG+TGG | 0.605991 | 8.2:-41334731 | None:intergenic |
| ATGGGAGCGTATGAGCAACT+AGG | 0.606147 | 8.2:+41337387 | MS.gene35967:CDS |
| ATAAAAGCACACCTGAAGCA+AGG | 0.606782 | 8.2:-41332128 | None:intergenic |
| TCACAAAGCAGCGGGCAGGG+AGG | 0.618149 | 8.2:+41333126 | MS.gene35967:CDS |
| TACGCAGATCTACAGTGAGG+AGG | 0.618557 | 8.2:+41334694 | MS.gene35967:intron |
| CCGTTTCAGTATCTCAGAGG+TGG | 0.620839 | 8.2:+41337908 | MS.gene35967:CDS |
| TGAAACGGAGTCTTTGGCAC+AGG | 0.622251 | 8.2:-41337893 | None:intergenic |
| GGTTAACGGCAGCGGTATGG+AGG | 0.622742 | 8.2:+41337542 | MS.gene35967:CDS |
| CGTACCGTTCTTCTCATGTG+TGG | 0.624259 | 8.2:-41332673 | None:intergenic |
| TCTTCCGGTAGCCGGCAACA+AGG | 0.629059 | 8.2:+41333975 | MS.gene35967:CDS |
| CAGCTCATTGAGAAAGAAAG+GGG | 0.629207 | 8.2:+41333211 | MS.gene35967:CDS |
| CTGTCAGATTGATGATGAGA+AGG | 0.630024 | 8.2:+41332605 | MS.gene35967:intron |
| TCTTTGCCTCATTGTACGCG+TGG | 0.634546 | 8.2:-41337937 | None:intergenic |
| CCAAGTCGGTTACGAAGATG+AGG | 0.637576 | 8.2:+41337350 | MS.gene35967:CDS |
| TAACTACTCTGTCGTCTCAG+TGG | 0.638294 | 8.2:-41337571 | None:intergenic |
| GCAAAATTCGAATCTTGCGG+AGG | 0.645849 | 8.2:+41331982 | MS.gene35967:CDS |
| AAACGAGTGACACAGCACTC+AGG | 0.648949 | 8.2:-41332055 | None:intergenic |
| GAGACTTGTGGAAACAACAA+TGG | 0.650744 | 8.2:+41332018 | MS.gene35967:CDS |
| AAATCCGCGAACTATGTCAA+CGG | 0.679051 | 8.2:-41330956 | None:intergenic |
| TCGCGGATTTACCGGCTCCG+AGG | 0.683131 | 8.2:+41330969 | MS.gene35967:CDS |
| ATTGATGATGAGAAGGTGCG+TGG | 0.685770 | 8.2:+41332612 | MS.gene35967:CDS |
| TTGTTAACATCACAAAGCAG+CGG | 0.687062 | 8.2:+41333117 | MS.gene35967:CDS |
| GGGCCTAGAATAGTCCAAGT+CGG | 0.690047 | 8.2:+41337336 | MS.gene35967:CDS |
| CTTCTACTCGACCCAAAACG+GGG | 0.692630 | 8.2:+41333152 | MS.gene35967:CDS |
| AGAACCACACATGAGAAGAA+CGG | 0.692834 | 8.2:+41332669 | MS.gene35967:CDS |
| TTTACTGTTACAGATCACGA+AGG | 0.695135 | 8.2:+41330930 | MS.gene35967:intron |
| ACTCCGTTTCAGTATCTCAG+AGG | 0.718294 | 8.2:+41337905 | MS.gene35967:CDS |
| TTACCACCACGCGTACAATG+AGG | 0.723287 | 8.2:+41337931 | MS.gene35967:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 41330786 | 41337991 | 41330786 | ID=MS.gene35967 |
| chr8.2 | mRNA | 41330786 | 41337991 | 41330786 | ID=MS.gene35967.t1;Parent=MS.gene35967 |
| chr8.2 | exon | 41330786 | 41330839 | 41330786 | ID=MS.gene35967.t1.exon1;Parent=MS.gene35967.t1 |
| chr8.2 | CDS | 41330786 | 41330839 | 41330786 | ID=cds.MS.gene35967.t1;Parent=MS.gene35967.t1 |
| chr8.2 | exon | 41330943 | 41331065 | 41330943 | ID=MS.gene35967.t1.exon2;Parent=MS.gene35967.t1 |
| chr8.2 | CDS | 41330943 | 41331065 | 41330943 | ID=cds.MS.gene35967.t1;Parent=MS.gene35967.t1 |
| chr8.2 | exon | 41331941 | 41332138 | 41331941 | ID=MS.gene35967.t1.exon3;Parent=MS.gene35967.t1 |
| chr8.2 | CDS | 41331941 | 41332138 | 41331941 | ID=cds.MS.gene35967.t1;Parent=MS.gene35967.t1 |
| chr8.2 | exon | 41332612 | 41332690 | 41332612 | ID=MS.gene35967.t1.exon4;Parent=MS.gene35967.t1 |
| chr8.2 | CDS | 41332612 | 41332690 | 41332612 | ID=cds.MS.gene35967.t1;Parent=MS.gene35967.t1 |
| chr8.2 | exon | 41333087 | 41333232 | 41333087 | ID=MS.gene35967.t1.exon5;Parent=MS.gene35967.t1 |
| chr8.2 | CDS | 41333087 | 41333232 | 41333087 | ID=cds.MS.gene35967.t1;Parent=MS.gene35967.t1 |
| chr8.2 | exon | 41333883 | 41333996 | 41333883 | ID=MS.gene35967.t1.exon6;Parent=MS.gene35967.t1 |
| chr8.2 | CDS | 41333883 | 41333996 | 41333883 | ID=cds.MS.gene35967.t1;Parent=MS.gene35967.t1 |
| chr8.2 | exon | 41334701 | 41334832 | 41334701 | ID=MS.gene35967.t1.exon7;Parent=MS.gene35967.t1 |
| chr8.2 | CDS | 41334701 | 41334832 | 41334701 | ID=cds.MS.gene35967.t1;Parent=MS.gene35967.t1 |
| chr8.2 | exon | 41337303 | 41337416 | 41337303 | ID=MS.gene35967.t1.exon8;Parent=MS.gene35967.t1 |
| chr8.2 | CDS | 41337303 | 41337416 | 41337303 | ID=cds.MS.gene35967.t1;Parent=MS.gene35967.t1 |
| chr8.2 | exon | 41337540 | 41337586 | 41337540 | ID=MS.gene35967.t1.exon9;Parent=MS.gene35967.t1 |
| chr8.2 | CDS | 41337540 | 41337586 | 41337540 | ID=cds.MS.gene35967.t1;Parent=MS.gene35967.t1 |
| chr8.2 | exon | 41337850 | 41337991 | 41337850 | ID=MS.gene35967.t1.exon10;Parent=MS.gene35967.t1 |
| chr8.2 | CDS | 41337850 | 41337991 | 41337850 | ID=cds.MS.gene35967.t1;Parent=MS.gene35967.t1 |
| Gene Sequence |
| Protein sequence |
