Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06833.t1 | XP_013464220.1 | 100 | 64 | 0 | 0 | 1 | 64 | 1 | 64 | 2.70E-27 | 131.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06833.t1 | P52855 | 68.3 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 6.7e-19 | 94.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06833.t1 | A0A072VJD3 | 100.0 | 64 | 0 | 0 | 1 | 64 | 1 | 64 | 1.9e-27 | 131.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049306 | MS.gene06833 | 0.838249 | 3.22E-57 | -1.69E-46 |
MS.gene049387 | MS.gene06833 | 0.873153 | 1.83E-67 | -1.69E-46 |
MS.gene050134 | MS.gene06833 | 0.846365 | 2.27E-59 | -1.69E-46 |
MS.gene050252 | MS.gene06833 | 0.862333 | 5.46E-64 | -1.69E-46 |
MS.gene050791 | MS.gene06833 | 0.803747 | 3.01E-49 | -1.69E-46 |
MS.gene050912 | MS.gene06833 | 0.815661 | 8.25E-52 | -1.69E-46 |
MS.gene051904 | MS.gene06833 | 0.804876 | 1.75E-49 | -1.69E-46 |
MS.gene052664 | MS.gene06833 | 0.852315 | 5.00E-61 | -1.69E-46 |
MS.gene052666 | MS.gene06833 | 0.853715 | 1.99E-61 | -1.69E-46 |
MS.gene053224 | MS.gene06833 | 0.830224 | 3.31E-55 | -1.69E-46 |
MS.gene054624 | MS.gene06833 | 0.803251 | 3.81E-49 | -1.69E-46 |
MS.gene057237 | MS.gene06833 | 0.8723 | 3.54E-67 | -1.69E-46 |
MS.gene057272 | MS.gene06833 | 0.841951 | 3.48E-58 | -1.69E-46 |
MS.gene057321 | MS.gene06833 | 0.81061 | 1.06E-50 | -1.69E-46 |
MS.gene057641 | MS.gene06833 | 0.880748 | 4.25E-70 | -1.69E-46 |
MS.gene057643 | MS.gene06833 | 0.912207 | 2.54E-83 | -1.69E-46 |
MS.gene059340 | MS.gene06833 | 0.88447 | 1.87E-71 | -1.69E-46 |
MS.gene060483 | MS.gene06833 | 0.849963 | 2.31E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene06833 | MS.gene01425 | PPI |
MS.gene06833 | MS.gene82009 | PPI |
MS.gene06833 | MS.gene013506 | PPI |
MS.gene06833 | MS.gene032942 | PPI |
MS.gene43071 | MS.gene06833 | PPI |
MS.gene06833 | MS.gene35379 | PPI |
MS.gene06833 | MS.gene01952 | PPI |
MS.gene06833 | MS.gene069339 | PPI |
MS.gene06833 | MS.gene88792 | PPI |
MS.gene06833 | MS.gene047578 | PPI |
MS.gene073078 | MS.gene06833 | PPI |
MS.gene009874 | MS.gene06833 | PPI |
MS.gene06833 | MS.gene06617 | PPI |
MS.gene44900 | MS.gene06833 | PPI |
MS.gene06833 | MS.gene002442 | PPI |
MS.gene06833 | MS.gene01091 | PPI |
MS.gene06833 | MS.gene78764 | PPI |
MS.gene06833 | MS.gene08521 | PPI |
MS.gene06833 | MS.gene045633 | PPI |
MS.gene06833 | MS.gene057237 | PPI |
MS.gene06833 | MS.gene060483 | PPI |
MS.gene06833 | MS.gene067331 | PPI |
MS.gene06833 | MS.gene76615 | PPI |
MS.gene06833 | MS.gene91826 | PPI |
MS.gene06833 | MS.gene97876 | PPI |
MS.gene06833 | MS.gene053952 | PPI |
MS.gene042719 | MS.gene06833 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06833.t1 | MTR_3g092600 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 3.12e-74 | 215 |
MS.gene06833.t1 | MTR_2g066750 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 1.07e-73 | 214 |
MS.gene06833.t1 | MTR_8g024350 | 64.545 | 110 | 37 | 2 | 1 | 110 | 1 | 108 | 1.42e-33 | 112 |
MS.gene06833.t1 | MTR_7g118060 | 62.712 | 59 | 22 | 0 | 1 | 59 | 1 | 59 | 1.00e-20 | 80.5 |
MS.gene06833.t1 | MTR_7g005740 | 66.129 | 62 | 2 | 1 | 1 | 62 | 1 | 43 | 1.52e-19 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06833.t1 | AT5G24510 | 57.391 | 115 | 40 | 4 | 1 | 110 | 1 | 111 | 4.14e-36 | 119 |
MS.gene06833.t1 | AT5G47700 | 57.658 | 111 | 45 | 1 | 2 | 110 | 3 | 113 | 7.99e-29 | 100 |
MS.gene06833.t1 | AT5G47700 | 57.658 | 111 | 45 | 1 | 2 | 110 | 3 | 113 | 7.99e-29 | 100 |
MS.gene06833.t1 | AT1G01100 | 60.185 | 108 | 42 | 1 | 4 | 110 | 5 | 112 | 4.26e-28 | 99.0 |
MS.gene06833.t1 | AT1G01100 | 60.185 | 108 | 42 | 1 | 4 | 110 | 5 | 112 | 4.26e-28 | 99.0 |
MS.gene06833.t1 | AT1G01100 | 60.185 | 108 | 42 | 1 | 4 | 110 | 5 | 112 | 4.26e-28 | 99.0 |
MS.gene06833.t1 | AT1G01100 | 50.459 | 109 | 39 | 1 | 2 | 110 | 3 | 96 | 2.14e-27 | 96.7 |
MS.gene06833.t1 | AT4G00810 | 54.955 | 111 | 48 | 1 | 2 | 110 | 3 | 113 | 2.87e-27 | 97.1 |
MS.gene06833.t1 | AT4G00810 | 54.955 | 111 | 48 | 1 | 2 | 110 | 3 | 113 | 2.87e-27 | 97.1 |
Find 32 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATATTAAACTTACGGTGAT+TGG | 0.289233 | 3.1:+74619979 | None:intergenic |
CAAAATGAGTTCCGGCGAAT+TGG | 0.294649 | 3.1:-74620043 | None:intergenic |
GTCATCGTCACTTTCTTCCT+TGG | 0.329724 | 3.1:+74618736 | None:intergenic |
ACGTCACCGTTGAATCTTAC+TGG | 0.348075 | 3.1:-74619842 | MS.gene06833:CDS |
AAAATGAGTTCCGGCGAATT+GGG | 0.368280 | 3.1:-74620042 | MS.gene06833:CDS |
TCTGAGCAAGCTTAGCGAAT+AGG | 0.392998 | 3.1:+74619814 | None:intergenic |
GCCGTATCTGCACCCGCTGC+TGG | 0.401410 | 3.1:-74619735 | MS.gene06833:CDS |
TCTGCACCCGCTGCTGGTGG+TGG | 0.439771 | 3.1:-74619729 | MS.gene06833:CDS |
ATATTAAACTTACGGTGATT+GGG | 0.443031 | 3.1:+74619980 | None:intergenic |
GCGGCTCCACCACCAGCAGC+GGG | 0.451994 | 3.1:+74619723 | None:intergenic |
GAAGATCGGTACTTTGTTGA+AGG | 0.461021 | 3.1:-74619871 | MS.gene06833:CDS |
ACCTGCCGCCGTTGAAAAGA+AGG | 0.476631 | 3.1:-74619688 | MS.gene06833:intron |
TGCGGCTCCACCACCAGCAG+CGG | 0.489051 | 3.1:+74619722 | None:intergenic |
TTGAACTCCGGCGCTGTTGG+TGG | 0.510539 | 3.1:-74619768 | MS.gene06833:CDS |
ACAATTCACAAAATGAGTTC+CGG | 0.522809 | 3.1:-74620051 | None:intergenic |
GGAAGAAAGTGACGATGACA+TGG | 0.523361 | 3.1:-74618732 | MS.gene06833:CDS |
AGCGGCACCACCAACAGCGC+CGG | 0.527844 | 3.1:+74619761 | None:intergenic |
ACCAGCAGCGGGTGCAGATA+CGG | 0.530473 | 3.1:+74619734 | None:intergenic |
TCCATCGTCGTGGAGGATCA+AGG | 0.532980 | 3.1:+74620005 | None:intergenic |
GCAAGCTTAGCGAATAGGCT+TGG | 0.542190 | 3.1:+74619819 | None:intergenic |
TTTGTTTAGGCGGAGAAGAT+CGG | 0.543289 | 3.1:-74619885 | MS.gene06833:intron |
GGCAGGTTCGGCAGCTGCTG+CGG | 0.548908 | 3.1:+74619704 | None:intergenic |
GTAAATGCAGCCCAATTCGC+CGG | 0.571217 | 3.1:+74620032 | None:intergenic |
ACCTTGATCCTCCACGACGA+TGG | 0.573503 | 3.1:-74620006 | MS.gene06833:CDS |
GTATCTGCACCCGCTGCTGG+TGG | 0.603091 | 3.1:-74619732 | MS.gene06833:CDS |
GCTTGGCCAGTAAGATTCAA+CGG | 0.629260 | 3.1:+74619836 | None:intergenic |
TTGGGATTCCATCGTCGTGG+AGG | 0.650788 | 3.1:+74619998 | None:intergenic |
GTGTTTGTAGGAGGAAGCCA+AGG | 0.654949 | 3.1:-74618753 | MS.gene06833:intron |
TGATTGGGATTCCATCGTCG+TGG | 0.662981 | 3.1:+74619995 | None:intergenic |
GGGTGCAGATACGGCAACAG+CGG | 0.665524 | 3.1:+74619743 | None:intergenic |
GAAGAAAGTGACGATGACAT+GGG | 0.678372 | 3.1:-74618731 | MS.gene06833:CDS |
ATCGTCGTGGAGGATCAAGG+TGG | 0.743990 | 3.1:+74620008 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTATATGTTTTTATCTTA+AGG | + | chr3.1:74619263-74619282 | None:intergenic | 10.0% |
!! | AATTGTATTGAAATTAGAAA+CGG | - | chr3.1:74619164-74619183 | MS.gene06833:intron | 15.0% |
!! | TATAAAAGATATAATTTCCT+CGG | - | chr3.1:74619386-74619405 | MS.gene06833:intron | 15.0% |
!!! | TTTTCATGCAAAATAATTTT+TGG | + | chr3.1:74619457-74619476 | None:intergenic | 15.0% |
!! | AAAGTAAAAAATGTGGATAT+AGG | + | chr3.1:74619826-74619845 | None:intergenic | 20.0% |
!! | AAGTAAAAAATGTGGATATA+GGG | + | chr3.1:74619825-74619844 | None:intergenic | 20.0% |
!! | ATTGTATTGAAATTAGAAAC+GGG | - | chr3.1:74619165-74619184 | MS.gene06833:intron | 20.0% |
!!! | ATATCCACATTTTTTACTTT+TGG | - | chr3.1:74619826-74619845 | MS.gene06833:CDS | 20.0% |
!!! | ATGAAAACATGTAGTTATTT+TGG | - | chr3.1:74619494-74619513 | MS.gene06833:intron | 20.0% |
!!! | ATTTTTCTTTGTTACTGTTT+GGG | - | chr3.1:74618841-74618860 | MS.gene06833:intron | 20.0% |
!!! | TATCCACATTTTTTACTTTT+GGG | - | chr3.1:74619827-74619846 | MS.gene06833:CDS | 20.0% |
! | AATTGTTGTGTTTCTTCATT+GGG | - | chr3.1:74619536-74619555 | MS.gene06833:intron | 25.0% |
! | ATATTAAACTTACGGTGATT+GGG | + | chr3.1:74618774-74618793 | None:intergenic | 25.0% |
! | GAAGAGAGATATTAAACTTA+CGG | + | chr3.1:74618782-74618801 | None:intergenic | 25.0% |
! | GACAACTCTGAATATAATTA+TGG | - | chr3.1:74619586-74619605 | MS.gene06833:intron | 25.0% |
! | TAATTGTTGTGTTTCTTCAT+TGG | - | chr3.1:74619535-74619554 | MS.gene06833:intron | 25.0% |
! | TTAAATAAGCCAATCATAAC+TGG | - | chr3.1:74619799-74619818 | MS.gene06833:CDS | 25.0% |
!! | AAACAATACCTTCTTTTCAA+CGG | + | chr3.1:74619074-74619093 | None:intergenic | 25.0% |
!! | CATTTTTCTTTGTTACTGTT+TGG | - | chr3.1:74618840-74618859 | MS.gene06833:intron | 25.0% |
!!! | ATAAAGTTAACTTGTTTTCC+TGG | - | chr3.1:74619716-74619735 | MS.gene06833:CDS | 25.0% |
!!! | TAAAGTTAACTTGTTTTCCT+GGG | - | chr3.1:74619717-74619736 | MS.gene06833:CDS | 25.0% |
AAAAGATATAATTTCCTCGG+AGG | - | chr3.1:74619389-74619408 | MS.gene06833:intron | 30.0% | |
AAAGATATAATTTCCTCGGA+GGG | - | chr3.1:74619390-74619409 | MS.gene06833:intron | 30.0% | |
AATGTAAGCTTATGCATAAG+TGG | + | chr3.1:74619671-74619690 | None:intergenic | 30.0% | |
AGATGCAAGTTCTACAAAAT+AGG | + | chr3.1:74619363-74619382 | None:intergenic | 30.0% | |
ATGTAAGCTTATGCATAAGT+GGG | + | chr3.1:74619670-74619689 | None:intergenic | 30.0% | |
CAGCAAATGACAGTATTTAT+CGG | + | chr3.1:74619426-74619445 | None:intergenic | 30.0% | |
GATATTAAACTTACGGTGAT+TGG | + | chr3.1:74618775-74618794 | None:intergenic | 30.0% | |
TATTCAGAGTTGTCTTGAAA+AGG | + | chr3.1:74619580-74619599 | None:intergenic | 30.0% | |
TCACCCAAAAGTAAAAAATG+TGG | + | chr3.1:74619833-74619852 | None:intergenic | 30.0% | |
TGTAATGATGAGTTACTGAT+TGG | - | chr3.1:74619135-74619154 | MS.gene06833:intron | 30.0% | |
TGTTAAATGAATGCTAGTTC+TGG | - | chr3.1:74619212-74619231 | MS.gene06833:intron | 30.0% | |
TTTGTTTAGTGACACTGTTT+GGG | + | chr3.1:74619772-74619791 | None:intergenic | 30.0% | |
! | ATTTTGTAGAACTTGCATCT+AGG | - | chr3.1:74619363-74619382 | MS.gene06833:intron | 30.0% |
! | CGATTTGGAGATTATAGAAA+TGG | + | chr3.1:74618809-74618828 | None:intergenic | 30.0% |
!! | TACTGTTTGGGTTTTTGTTT+AGG | - | chr3.1:74618853-74618872 | MS.gene06833:intron | 30.0% |
AAGATATAATTTCCTCGGAG+GGG | - | chr3.1:74619391-74619410 | MS.gene06833:intron | 35.0% | |
AATGAGATCTATGAGCGATT+TGG | + | chr3.1:74618824-74618843 | None:intergenic | 35.0% | |
CTTCATTGGGATTTGAGAAT+TGG | - | chr3.1:74619549-74619568 | MS.gene06833:intron | 35.0% | |
GTTTGTTTAGTGACACTGTT+TGG | + | chr3.1:74619773-74619792 | None:intergenic | 35.0% | |
TCATTCCATACTGTGTTTGT+AGG | - | chr3.1:74619986-74620005 | MS.gene06833:intron | 35.0% | |
! | ATTTTGTGCTGTGATCAAGT+TGG | - | chr3.1:74619330-74619349 | MS.gene06833:intron | 35.0% |
! | TTTTGTGCTGTGATCAAGTT+GGG | - | chr3.1:74619331-74619350 | MS.gene06833:intron | 35.0% |
!! | TGTTTGGGTTTTTGTTTAGG+CGG | - | chr3.1:74618856-74618875 | MS.gene06833:intron | 35.0% |
ATCAACAAGACAATCTTCCC+AGG | + | chr3.1:74619737-74619756 | None:intergenic | 40.0% | |
GAAGAAAGTGACGATGACAT+GGG | - | chr3.1:74620020-74620039 | MS.gene06833:CDS | 40.0% | |
GAAGATCGGTACTTTGTTGA+AGG | - | chr3.1:74618880-74618899 | MS.gene06833:intron | 40.0% | |
GATATAGGGCCAGTTATGAT+TGG | + | chr3.1:74619811-74619830 | None:intergenic | 40.0% | |
TTCCATACTGTGTTTGTAGG+AGG | - | chr3.1:74619989-74620008 | MS.gene06833:intron | 40.0% | |
TTCCTCCTACAAACACAGTA+TGG | + | chr3.1:74619994-74620013 | None:intergenic | 40.0% | |
TTTGTTTAGGCGGAGAAGAT+CGG | - | chr3.1:74618866-74618885 | MS.gene06833:intron | 40.0% | |
! | CAATACCTTCTTTTCAACGG+CGG | + | chr3.1:74619071-74619090 | None:intergenic | 40.0% |
! | TTTGTGCTGTGATCAAGTTG+GGG | - | chr3.1:74619332-74619351 | MS.gene06833:intron | 40.0% |
!! | GATGATCTCGTTTTGAACTC+CGG | - | chr3.1:74618971-74618990 | MS.gene06833:intron | 40.0% |
ACGTCACCGTTGAATCTTAC+TGG | - | chr3.1:74618909-74618928 | MS.gene06833:intron | 45.0% | |
GCTTGGCCAGTAAGATTCAA+CGG | + | chr3.1:74618918-74618937 | None:intergenic | 45.0% | |
GGAAGAAAGTGACGATGACA+TGG | - | chr3.1:74620019-74620038 | MS.gene06833:CDS | 45.0% | |
TCTGAGCAAGCTTAGCGAAT+AGG | + | chr3.1:74618940-74618959 | None:intergenic | 45.0% | |
! | GTCATCGTCACTTTCTTCCT+TGG | + | chr3.1:74620018-74620037 | None:intergenic | 45.0% |
GCAAGCTTAGCGAATAGGCT+TGG | + | chr3.1:74618935-74618954 | None:intergenic | 50.0% | |
GTAAATGCAGCCCAATTCGC+CGG | + | chr3.1:74618722-74618741 | None:intergenic | 50.0% | |
GTGTTTGTAGGAGGAAGCCA+AGG | - | chr3.1:74619998-74620017 | MS.gene06833:CDS | 50.0% | |
TGATTGGGATTCCATCGTCG+TGG | + | chr3.1:74618759-74618778 | None:intergenic | 50.0% | |
ACCTGCCGCCGTTGAAAAGA+AGG | - | chr3.1:74619063-74619082 | MS.gene06833:intron | 55.0% | |
ACCTTGATCCTCCACGACGA+TGG | - | chr3.1:74618745-74618764 | MS.gene06833:CDS | 55.0% | |
ATCGTCGTGGAGGATCAAGG+TGG | + | chr3.1:74618746-74618765 | None:intergenic | 55.0% | |
TCCATCGTCGTGGAGGATCA+AGG | + | chr3.1:74618749-74618768 | None:intergenic | 55.0% | |
TTGGGATTCCATCGTCGTGG+AGG | + | chr3.1:74618756-74618775 | None:intergenic | 55.0% | |
! | ACCTTCTTTTCAACGGCGGC+AGG | + | chr3.1:74619067-74619086 | None:intergenic | 55.0% |
! | CTTTTCAACGGCGGCAGGTT+CGG | + | chr3.1:74619062-74619081 | None:intergenic | 55.0% |
!! | GTTTTGAACTCCGGCGCTGT+TGG | - | chr3.1:74618980-74618999 | MS.gene06833:intron | 55.0% |
ACCAGCAGCGGGTGCAGATA+CGG | + | chr3.1:74619020-74619039 | None:intergenic | 60.0% | |
CGGATACAGAATCCCCTCCG+AGG | + | chr3.1:74619406-74619425 | None:intergenic | 60.0% | |
GGGTGCAGATACGGCAACAG+CGG | + | chr3.1:74619011-74619030 | None:intergenic | 60.0% | |
TTGAACTCCGGCGCTGTTGG+TGG | - | chr3.1:74618983-74619002 | MS.gene06833:intron | 60.0% | |
GTATCTGCACCCGCTGCTGG+TGG | - | chr3.1:74619019-74619038 | MS.gene06833:intron | 65.0% | |
AGCGGCACCACCAACAGCGC+CGG | + | chr3.1:74618993-74619012 | None:intergenic | 70.0% | |
GCCGTATCTGCACCCGCTGC+TGG | - | chr3.1:74619016-74619035 | MS.gene06833:intron | 70.0% | |
GGCAGGTTCGGCAGCTGCTG+CGG | + | chr3.1:74619050-74619069 | None:intergenic | 70.0% | |
TCTGCACCCGCTGCTGGTGG+TGG | - | chr3.1:74619022-74619041 | MS.gene06833:intron | 70.0% | |
TGCGGCTCCACCACCAGCAG+CGG | + | chr3.1:74619032-74619051 | None:intergenic | 70.0% | |
GCGGCTCCACCACCAGCAGC+GGG | + | chr3.1:74619031-74619050 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 74618712 | 74620061 | 74618712 | ID=MS.gene06833 |
chr3.1 | mRNA | 74618712 | 74620061 | 74618712 | ID=MS.gene06833.t1;Parent=MS.gene06833 |
chr3.1 | exon | 74619993 | 74620061 | 74619993 | ID=MS.gene06833.t1.exon1;Parent=MS.gene06833.t1 |
chr3.1 | CDS | 74619993 | 74620061 | 74619993 | ID=cds.MS.gene06833.t1;Parent=MS.gene06833.t1 |
chr3.1 | exon | 74619689 | 74619898 | 74619689 | ID=MS.gene06833.t1.exon2;Parent=MS.gene06833.t1 |
chr3.1 | CDS | 74619689 | 74619898 | 74619689 | ID=cds.MS.gene06833.t1;Parent=MS.gene06833.t1 |
chr3.1 | exon | 74618712 | 74618765 | 74618712 | ID=MS.gene06833.t1.exon3;Parent=MS.gene06833.t1 |
chr3.1 | CDS | 74618712 | 74618765 | 74618712 | ID=cds.MS.gene06833.t1;Parent=MS.gene06833.t1 |
Gene Sequence |
Protein sequence |