AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87496


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87496.t1 MTR_4g022290 86.937 444 56 2 1 443 1 443 0.0 787
MS.gene87496.t1 MTR_4g094828 82.705 451 65 4 1 442 1 447 0.0 758
MS.gene87496.t1 MTR_8g079710 76.286 447 98 8 1 443 1 443 0.0 671
MS.gene87496.t1 MTR_4g094835 53.898 449 192 9 1 441 1 442 1.42e-165 474
MS.gene87496.t1 MTR_4g094842 52.967 455 183 8 1 438 1 441 7.71e-160 459
MS.gene87496.t1 MTR_0190s0020 49.889 451 205 7 1 442 1 439 2.57e-150 435
MS.gene87496.t1 MTR_3g026310 49.788 472 190 12 1 448 1 449 3.44e-148 430
MS.gene87496.t1 MTR_4g022825 51.515 462 179 13 1 442 1 437 3.80e-148 429
MS.gene87496.t1 MTR_4g094838 51.236 445 185 9 4 437 1 424 8.09e-148 428
MS.gene87496.t1 MTR_4g022800 50.435 460 189 11 1 442 1 439 6.02e-146 424
MS.gene87496.t1 MTR_8g041770 49.446 451 206 9 1 442 1 438 1.90e-144 420
MS.gene87496.t1 MTR_4g022720 50.331 453 193 11 1 442 1 432 2.90e-143 417
MS.gene87496.t1 MTR_3g088420 49.780 454 192 12 1 442 1 430 4.52e-143 416
MS.gene87496.t1 MTR_7g026860 49.782 458 191 11 1 442 1 435 1.11e-142 415
MS.gene87496.t1 MTR_4g022670 49.237 459 195 11 1 442 1 438 4.82e-142 414
MS.gene87496.t1 MTR_4g094832 56.649 376 142 8 74 437 56 422 2.22e-141 412
MS.gene87496.t1 MTR_4g022760 44.105 458 176 10 1 442 1 394 8.84e-116 345
MS.gene87496.t1 MTR_6g016815 40.089 449 179 10 1 443 15 379 2.16e-96 295
MS.gene87496.t1 MTR_3g101930 36.242 447 243 14 25 447 24 452 1.42e-78 251
MS.gene87496.t1 MTR_3g101900 35.714 434 246 12 30 447 29 445 1.58e-78 251
MS.gene87496.t1 MTR_3g102010 37.020 443 248 14 27 450 26 456 6.97e-78 249
MS.gene87496.t1 MTR_3g101960 37.182 433 239 13 25 437 23 442 1.51e-77 249
MS.gene87496.t1 MTR_3g101970 36.967 422 220 13 25 426 23 418 2.09e-77 248
MS.gene87496.t1 MTR_3g102020 36.281 441 247 13 25 444 23 450 1.92e-76 246
MS.gene87496.t1 MTR_8g040760 53.881 219 91 4 1 214 1 214 2.99e-74 232
MS.gene87496.t1 MTR_5g081960 32.359 479 248 14 29 449 25 485 2.70e-63 213
MS.gene87496.t1 MTR_4g094825 55.914 186 76 3 24 204 85 269 1.06e-60 203
MS.gene87496.t1 MTR_4g094825 40.278 216 101 7 226 437 192 383 5.10e-35 134
MS.gene87496.t1 MTR_4g015180 32.068 474 248 13 24 437 20 479 2.31e-59 202
MS.gene87496.t1 MTR_7g026850 60.127 158 60 3 30 186 7 162 1.03e-58 191
MS.gene87496.t1 MTR_3g070170 31.648 455 258 11 21 437 23 462 1.19e-58 200
MS.gene87496.t1 MTR_8g040780 41.880 234 123 5 208 438 2 225 5.88e-49 168
MS.gene87496.t1 MTR_6g034495 66.379 116 37 1 72 185 45 160 2.08e-46 158
MS.gene87496.t1 MTR_3g102030 33.028 327 177 11 79 398 29 320 7.99e-43 154
MS.gene87496.t1 MTR_6g045553 28.982 452 265 12 27 437 31 467 1.56e-37 143
MS.gene87496.t1 MTR_7g026770 43.646 181 79 4 148 328 132 289 7.03e-37 137
MS.gene87496.t1 MTR_7g026830 70.732 82 24 0 91 172 16 97 4.32e-35 126
MS.gene87496.t1 MTR_6g034485 41.791 134 65 3 193 322 1 125 1.21e-26 104
MS.gene87496.t1 MTR_8g075610 25.700 393 247 16 61 434 47 413 9.83e-25 106
MS.gene87496.t1 MTR_2g105330 25.799 407 252 18 48 429 39 420 1.30e-22 100
MS.gene87496.t1 MTR_2g064495 25.799 407 252 18 48 429 39 420 1.36e-22 100
MS.gene87496.t1 MTR_4g007540 25.558 403 253 18 48 426 39 418 1.02e-21 97.4
MS.gene87496.t1 MTR_3g026950 25.866 433 259 20 37 430 28 437 1.16e-20 94.4
MS.gene87496.t1 MTR_1g040175 25.000 372 236 15 36 394 46 387 2.23e-19 90.5
MS.gene87496.t1 MTR_7g085930 27.098 417 243 19 51 424 49 447 4.14e-19 90.1
MS.gene87496.t1 MTR_1g081660 25.183 409 230 17 31 401 31 401 4.76e-19 89.7
MS.gene87496.t1 MTR_4g097090 24.490 441 258 21 31 426 30 440 6.85e-19 89.4
MS.gene87496.t1 MTR_8g096530 25.501 349 219 12 61 393 59 382 1.11e-18 88.6
MS.gene87496.t1 MTR_3g049150 24.057 424 253 16 48 430 38 433 1.12e-18 88.6
MS.gene87496.t1 MTR_7g114470 24.406 463 273 23 32 446 25 458 1.50e-18 88.2
MS.gene87496.t1 MTR_7g085990 25.943 424 255 19 51 434 45 449 3.07e-18 87.4
MS.gene87496.t1 MTR_3g098980 23.164 354 224 12 61 395 66 390 7.37e-18 85.9
MS.gene87496.t1 MTR_6g015320 24.129 402 248 15 31 396 29 409 1.81e-17 84.7
MS.gene87496.t1 MTR_7g014200 23.747 459 267 18 29 432 28 458 2.42e-17 84.7
MS.gene87496.t1 MTR_7g027175 24.311 399 256 13 51 431 58 428 3.44e-17 84.0
MS.gene87496.t1 MTR_5g076700 24.026 462 275 22 32 446 24 456 5.21e-17 83.6
MS.gene87496.t1 MTR_7g014160 24.554 448 264 17 31 426 30 455 5.59e-17 83.6
MS.gene87496.t1 MTR_1g040215 25.935 401 223 19 32 394 23 387 6.92e-17 83.2
MS.gene87496.t1 MTR_5g090880 25.067 375 213 15 61 394 67 414 1.66e-16 82.0
MS.gene87496.t1 MTR_2g089765 24.130 460 257 22 28 426 36 464 1.95e-16 82.0
MS.gene87496.t1 MTR_4g127650 24.574 411 245 20 61 434 66 448 5.43e-16 80.5
MS.gene87496.t1 MTR_6g015830 25.000 412 233 17 31 396 34 415 7.08e-16 80.1
MS.gene87496.t1 MTR_3g028210 23.928 443 277 16 31 432 31 454 5.94e-15 77.0
MS.gene87496.t1 MTR_3g087640 23.918 439 273 16 36 426 31 456 6.22e-15 77.0
MS.gene87496.t1 MTR_4g013050 24.874 398 215 17 59 426 51 394 9.71e-15 76.3
MS.gene87496.t1 MTR_8g012750 26.139 417 240 19 28 393 23 422 1.18e-14 76.3
MS.gene87496.t1 MTR_5g090810 23.821 403 234 15 39 394 36 412 1.29e-14 76.3
MS.gene87496.t1 MTR_2g089670 25.632 277 166 10 144 393 166 429 2.64e-14 75.1
MS.gene87496.t1 MTR_7g014610 23.126 467 266 19 34 436 32 469 3.79e-14 74.7
MS.gene87496.t1 MTR_5g090830 23.573 403 235 15 39 394 36 412 6.08e-14 73.9
MS.gene87496.t1 MTR_6g015850 24.265 408 238 13 31 396 34 412 6.60e-14 73.9
MS.gene87496.t1 MTR_5g084870 24.714 437 267 19 3 418 2 397 9.49e-14 73.2
MS.gene87496.t1 MTR_7g114490 23.235 439 266 19 32 431 24 430 1.45e-13 73.2
MS.gene87496.t1 MTR_3g071320 26.488 336 188 15 28 330 23 332 1.77e-13 72.4
MS.gene87496.t1 MTR_7g056087 23.239 426 267 18 39 431 30 428 8.73e-13 70.5
MS.gene87496.t1 MTR_6g053810 27.336 289 184 12 61 336 71 346 9.55e-13 70.5
MS.gene87496.t1 MTR_7g114520 23.529 408 244 19 32 401 25 402 1.17e-12 70.1
MS.gene87496.t1 MTR_3g086020 25.537 419 246 18 30 426 22 396 1.61e-12 69.3
MS.gene87496.t1 MTR_2g089755 24.138 406 260 17 31 397 37 433 3.23e-12 68.6
MS.gene87496.t1 MTR_8g079950 24.944 445 262 21 3 418 2 403 5.10e-12 68.2
MS.gene87496.t1 MTR_8g079980 22.368 380 251 15 54 418 52 402 1.25e-11 66.6
MS.gene87496.t1 MTR_7g026780 37.838 111 40 5 333 442 26 108 1.84e-11 61.2
MS.gene87496.t1 MTR_7g013850 20.860 465 276 16 34 432 32 470 2.47e-11 65.9
MS.gene87496.t1 MTR_7g084910 25.185 270 164 9 59 309 68 318 5.44e-11 64.7
MS.gene87496.t1 MTR_0502s0010 26.697 221 140 7 102 311 1 210 7.13e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87496.t1 AT5G67150 38.393 448 250 12 3 437 4 438 1.75e-95 295
MS.gene87496.t1 AT3G50300 38.914 442 236 13 1 426 1 424 1.45e-86 272
MS.gene87496.t1 AT3G50270 36.712 444 250 12 4 431 6 434 7.08e-84 265
MS.gene87496.t1 AT3G50280 35.811 444 257 11 1 431 1 429 8.85e-83 262
MS.gene87496.t1 AT5G38130 37.471 435 250 12 1 426 21 442 1.82e-82 262
MS.gene87496.t1 AT5G67160 37.232 419 236 10 27 437 25 424 7.32e-81 257
MS.gene87496.t1 AT5G42830 35.765 425 244 12 30 437 29 441 1.20e-75 244
MS.gene87496.t1 AT5G07850 35.363 427 246 11 30 437 30 445 8.11e-73 236
MS.gene87496.t1 AT5G07860 36.620 426 238 13 30 437 30 441 4.96e-71 232
MS.gene87496.t1 AT5G01210 33.038 451 256 11 24 437 20 461 4.19e-65 217
MS.gene87496.t1 AT2G39980 32.563 476 260 12 11 437 9 472 5.22e-65 217
MS.gene87496.t1 AT5G07870 34.607 445 249 13 30 444 30 462 8.31e-64 213
MS.gene87496.t1 AT3G50280 37.013 308 177 7 132 431 1 299 1.65e-57 192
MS.gene87496.t1 AT3G50290 38.929 280 146 7 126 391 1 269 7.38e-51 174
MS.gene87496.t1 AT5G23940 31.651 436 255 12 27 434 21 441 3.53e-49 175
MS.gene87496.t1 AT5G41040 26.546 388 249 15 61 434 69 434 2.94e-24 105
MS.gene87496.t1 AT5G41040 26.684 386 247 15 61 432 85 448 4.10e-24 104
MS.gene87496.t1 AT5G48930 25.061 407 250 17 48 426 39 418 2.22e-21 96.7
MS.gene87496.t1 AT3G29590 22.323 439 284 15 31 436 28 442 3.03e-20 93.2
MS.gene87496.t1 AT1G65450 26.479 355 217 16 59 393 70 400 3.63e-20 93.2
MS.gene87496.t1 AT3G48720 27.073 410 249 20 46 433 42 423 6.93e-20 92.0
MS.gene87496.t1 AT5G63560 26.076 395 222 16 61 427 61 413 1.51e-19 90.9
MS.gene87496.t1 AT2G19070 26.316 456 253 22 25 426 9 435 1.62e-19 91.3
MS.gene87496.t1 AT1G78990 26.558 369 219 14 50 394 56 396 9.27e-18 85.9
MS.gene87496.t1 AT5G57840 25.121 414 245 18 48 426 39 422 1.20e-17 85.5
MS.gene87496.t1 AT1G32910 25.069 363 215 12 61 394 65 399 8.52e-16 79.7
MS.gene87496.t1 AT3G29670 21.915 470 325 16 4 452 3 451 8.95e-16 79.7
MS.gene87496.t1 AT5G17540 24.455 413 227 17 32 401 23 393 1.36e-15 79.3
MS.gene87496.t1 AT3G26040 26.526 426 249 17 30 426 20 410 2.99e-15 78.2
MS.gene87496.t1 AT5G16410 24.868 378 218 16 48 394 77 419 3.55e-15 77.8
MS.gene87496.t1 AT5G47950 24.289 387 239 15 57 429 57 403 8.47e-15 76.6
MS.gene87496.t1 AT1G28680 26.211 351 215 13 64 396 65 389 4.33e-14 74.3
MS.gene87496.t1 AT5G23970 22.963 405 249 16 47 427 38 403 5.60e-14 73.9
MS.gene87496.t1 AT3G30280 24.289 387 245 19 60 427 61 418 7.96e-14 73.6
MS.gene87496.t1 AT1G24420 25.223 337 210 13 71 396 76 381 5.51e-13 70.9
MS.gene87496.t1 AT1G24420 25.223 337 210 13 71 396 76 381 5.51e-13 70.9
MS.gene87496.t1 AT1G28680 26.910 301 184 10 64 349 65 344 1.62e-12 69.3
MS.gene87496.t1 AT3G47170 23.279 305 179 10 61 332 70 352 1.58e-11 66.6
MS.gene87496.t1 AT2G40230 23.333 360 253 9 48 396 42 389 5.04e-11 64.7
MS.gene87496.t1 AT4G15390 21.928 415 265 16 61 450 64 444 8.29e-11 64.3
MS.gene87496.t1 AT4G15390 21.928 415 265 16 61 450 64 444 8.29e-11 64.3

Find 96 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCTTCCTTATGATATTT+TGG 0.184663 4.1:+76081093 MS.gene87496:CDS
AAGTTAGAAGAGAATTATTT+TGG 0.198109 4.1:+76080722 MS.gene87496:CDS
ATGGTCAATTTGGTTTGTTT+TGG 0.227446 4.1:-76079979 None:intergenic
AGGAACTATTGTTGGCTTAT+TGG 0.232541 4.1:-76080381 None:intergenic
CATTCTTGTCCTACAATCTA+TGG 0.234125 4.1:-76080693 None:intergenic
GGATCTCAAATTTCTCAAAT+TGG 0.239669 4.1:+76079923 MS.gene87496:CDS
GGATATGTAATAATGCAAAA+AGG 0.251454 4.1:+76080764 MS.gene87496:CDS
TATGGAAAAGAAGACCTCTT+TGG 0.321294 4.1:-76079953 None:intergenic
GTTGGACTTCAAAGAAATAT+TGG 0.326500 4.1:+76081019 MS.gene87496:CDS
ATGGGACGGTTAACATTGTT+TGG 0.329441 4.1:-76080422 None:intergenic
CATCACCATGATTTGTTGCT+TGG 0.340899 4.1:-76079857 None:intergenic
TTTGTTTAAGATGGTCAATT+TGG 0.343039 4.1:-76079989 None:intergenic
AAATAATTCTCTTCTAACTT+TGG 0.349532 4.1:-76080719 None:intergenic
GTGTAGACGGCAAGTCATTT+TGG 0.349934 4.1:+76080321 MS.gene87496:CDS
AGGAAACGACCCTATGTCTA+TGG 0.357040 4.1:+76081123 MS.gene87496:CDS
ATGGAAAAGAAGACCTCTTT+GGG 0.360598 4.1:-76079952 None:intergenic
ACGAATGCAGACCTTTCTTC+TGG 0.360777 4.1:-76080665 None:intergenic
GTTGAAAACCCCGTTTATAT+CGG 0.362533 4.1:+76080889 MS.gene87496:CDS
TTTGGCATTTCATCAACTCT+TGG 0.368556 4.1:+76080339 MS.gene87496:CDS
TTACGGTAATGACTTTGGTT+GGG 0.373170 4.1:+76080970 MS.gene87496:CDS
TTGGCATTTCATCAACTCTT+GGG 0.376104 4.1:+76080340 MS.gene87496:CDS
AGCCTATTGCAGTTAGAAAT+GGG 0.388093 4.1:+76080996 MS.gene87496:CDS
ACCCCATTTCTAACTGCAAT+AGG 0.394232 4.1:-76080998 None:intergenic
TCGTCTTACCCATAGATTGT+AGG 0.400779 4.1:+76080684 MS.gene87496:CDS
AAGCCTATTGCAGTTAGAAA+TGG 0.401535 4.1:+76080995 MS.gene87496:CDS
AACTATTACGGTAATGACTT+TGG 0.405935 4.1:+76080965 MS.gene87496:CDS
TTAATCGACGGTATCTTCAT+TGG 0.408333 4.1:+76080278 MS.gene87496:CDS
TCGAAAGAAGGAACTATTGT+TGG 0.415115 4.1:-76080389 None:intergenic
TCACCACGGTTCAACTATTA+CGG 0.422782 4.1:+76080953 MS.gene87496:CDS
CTACCTGGCTCCGATATAAA+CGG 0.425817 4.1:-76080899 None:intergenic
TACCTGGCTCCGATATAAAC+GGG 0.427106 4.1:-76080898 None:intergenic
GGGAGTGGAATCGGAGCAAC+TGG 0.428061 4.1:+76080743 MS.gene87496:CDS
AAATTGTTCATTTATCTCCA+TGG 0.445544 4.1:+76079901 MS.gene87496:CDS
ATTACGGTAATGACTTTGGT+TGG 0.447960 4.1:+76080969 MS.gene87496:CDS
AGGCAAGTGTTTGTTTAAGA+TGG 0.458293 4.1:-76079998 None:intergenic
TACGGTAATGACTTTGGTTG+GGG 0.461686 4.1:+76080971 MS.gene87496:CDS
GGAAACCAGCGTTCGAAAGA+AGG 0.465595 4.1:-76080401 None:intergenic
TAATGATTGATGTTGAATCT+TGG 0.469422 4.1:+76080867 MS.gene87496:CDS
AATTGTTCATTTATCTCCAT+GGG 0.481963 4.1:+76079902 MS.gene87496:CDS
AAAGGGGAATTAATGGAAAG+TGG 0.488381 4.1:+76080782 MS.gene87496:CDS
ACAATCCAAGCAACAAATCA+TGG 0.492574 4.1:+76079852 MS.gene87496:CDS
TAAGAATAATGAAGAAACAA+TGG 0.493631 4.1:-76080192 None:intergenic
ATAGCATCCAAAATATCATA+AGG 0.495132 4.1:-76081100 None:intergenic
ACAATGGGAGGAACATACTT+TGG 0.495798 4.1:-76080176 None:intergenic
AAGAATAATGAAGAAACAAT+GGG 0.496513 4.1:-76080191 None:intergenic
TTGAGAAATTTGAGATCCCA+TGG 0.499411 4.1:-76079918 None:intergenic
AAACTAGAATCCATAGACAT+AGG 0.502667 4.1:-76081133 None:intergenic
GAATTAATGGAAAGTGGGAT+TGG 0.504651 4.1:+76080788 MS.gene87496:CDS
ACCAGCGTTGTTACAAATGA+TGG 0.505482 4.1:-76080099 None:intergenic
GGTAGAGTTATTGTGCTTGG+TGG 0.507052 4.1:+76081040 MS.gene87496:CDS
GAATTTGTTCCTTTGTAAAG+TGG 0.513443 4.1:-76080508 None:intergenic
TGGGATTGGTAAAATTGCTA+TGG 0.515611 4.1:+76080802 MS.gene87496:CDS
AACTTCTTTCCACTACTCGC+TGG 0.519870 4.1:+76080029 MS.gene87496:CDS
TACTTATAATTAAACGCCAA+AGG 0.529613 4.1:-76080628 None:intergenic
ATTGGTAGAGTTATTGTGCT+TGG 0.531528 4.1:+76081037 MS.gene87496:CDS
AAGGGGAATTAATGGAAAGT+GGG 0.533012 4.1:+76080783 MS.gene87496:CDS
ATGGAACATGAGGCGTTGCT+AGG 0.533394 4.1:-76080080 None:intergenic
AAAATCTTAAACCAGAAGAA+AGG 0.538946 4.1:+76080654 MS.gene87496:CDS
AACTAGAATCCATAGACATA+GGG 0.544098 4.1:-76081132 None:intergenic
CATACGGTTTCCTTTCACAA+AGG 0.546568 4.1:+76080442 MS.gene87496:CDS
ACCCCGTTTATATCGGAGCC+AGG 0.547815 4.1:+76080896 MS.gene87496:CDS
AGATTACTTGATGATCTACC+TGG 0.550288 4.1:-76080914 None:intergenic
ATCAAAATCTCATCATGAGA+AGG 0.558207 4.1:+76080844 MS.gene87496:CDS
TGGTTGAAGTATGTCGGCAA+TGG 0.566982 4.1:-76080156 None:intergenic
ATTGCAGTTAGAAATGGGGT+TGG 0.568648 4.1:+76081001 MS.gene87496:CDS
ATACTTTGGTTGAAGTATGT+CGG 0.572459 4.1:-76080162 None:intergenic
AAAAGAAGACCTCTTTGGGT+TGG 0.572933 4.1:-76079948 None:intergenic
TAGTGGAAAGAAGTTAAGTG+TGG 0.573405 4.1:-76080021 None:intergenic
CAAGCAACAAATCATGGTGA+TGG 0.574475 4.1:+76079858 MS.gene87496:CDS
GTGCTTGGTGGTGCAGAAGA+AGG 0.576706 4.1:+76081052 MS.gene87496:CDS
ATTCTTGTCCTACAATCTAT+GGG 0.578627 4.1:-76080692 None:intergenic
CTTTGTGAAAGGAAACCGTA+TGG 0.579781 4.1:-76080441 None:intergenic
TAGTTCCTTCTTTCGAACGC+TGG 0.581888 4.1:+76080396 MS.gene87496:CDS
ACAATGTTAACCGTCCCATA+CGG 0.591996 4.1:+76080426 MS.gene87496:CDS
GTTACTTGTACTGCAAGTAG+TGG 0.602193 4.1:-76080251 None:intergenic
ATTAACCATGTGTGTGTAGA+CGG 0.608212 4.1:+76080308 MS.gene87496:CDS
GCCTATTGCAGTTAGAAATG+GGG 0.609427 4.1:+76080997 MS.gene87496:CDS
ACAAGACGACCAGCGAGTAG+TGG 0.610703 4.1:-76080038 None:intergenic
TCGAATCTTCCACTTTACAA+AGG 0.610715 4.1:+76080499 MS.gene87496:CDS
TGGAAAGAAGTTAAGTGTGG+AGG 0.618484 4.1:-76080018 None:intergenic
TCCATCATTTGTAACAACGC+TGG 0.618527 4.1:+76080098 MS.gene87496:CDS
ACAAATCATGGTGATGGTGA+TGG 0.619825 4.1:+76079864 MS.gene87496:CDS
TGAAAGGAAACCGTATGGGA+CGG 0.630636 4.1:-76080436 None:intergenic
GTTACAAATGATGGAACATG+AGG 0.636643 4.1:-76080090 None:intergenic
AATTGCTATGGAAATGAACA+AGG 0.638167 4.1:+76080814 MS.gene87496:CDS
AAATTGGCACCAACCCAAAG+AGG 0.639346 4.1:+76079939 MS.gene87496:CDS
TTTGTGAAAGGAAACCGTAT+GGG 0.644706 4.1:-76080440 None:intergenic
TCTTGGGCTGAAATCTCACA+AGG 0.661149 4.1:+76080356 MS.gene87496:CDS
CAAGTAACAGAGTTAATCGA+CGG 0.676652 4.1:+76080266 MS.gene87496:CDS
GATAAGTTGAATCTCTGTCA+TGG 0.679570 4.1:-76079820 None:intergenic
AATAATGAAGAAACAATGGG+AGG 0.681867 4.1:-76080188 None:intergenic
ACTTGCCGTCTACACACACA+TGG 0.683354 4.1:-76080313 None:intergenic
TGATAGCAAGCAGTTCACCA+CGG 0.696229 4.1:+76080939 MS.gene87496:CDS
AATGATGTGAAAAGCTACGA+AGG 0.699069 4.1:+76080218 MS.gene87496:CDS
ACCTGGCTCCGATATAAACG+GGG 0.710991 4.1:-76080897 None:intergenic
TTACCGTAATAGTTGAACCG+TGG 0.734430 4.1:-76080956 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTCTCTTCTAACTT+TGG - chr4.1:76080722-76080741 None:intergenic 20.0%
!! AAGAATAATGAAGAAACAAT+GGG - chr4.1:76080194-76080213 None:intergenic 20.0%
!! ATATGTAATAATGCAAAAAG+GGG + chr4.1:76080766-76080785 MS.gene87496:CDS 20.0%
!! GATATGTAATAATGCAAAAA+GGG + chr4.1:76080765-76080784 MS.gene87496:CDS 20.0%
!! TAAGAATAATGAAGAAACAA+TGG - chr4.1:76080195-76080214 None:intergenic 20.0%
!!! AAGTTAGAAGAGAATTATTT+TGG + chr4.1:76080722-76080741 MS.gene87496:CDS 20.0%
!!! AGTTAGAAGAGAATTATTTT+GGG + chr4.1:76080723-76080742 MS.gene87496:CDS 20.0%
! AAAATCTTAAACCAGAAGAA+AGG + chr4.1:76080654-76080673 MS.gene87496:CDS 25.0%
! AAATTGTTCATTTATCTCCA+TGG + chr4.1:76079901-76079920 MS.gene87496:CDS 25.0%
! AATTGTTCATTTATCTCCAT+GGG + chr4.1:76079902-76079921 MS.gene87496:CDS 25.0%
! ATAGCATCCAAAATATCATA+AGG - chr4.1:76081103-76081122 None:intergenic 25.0%
! GGATATGTAATAATGCAAAA+AGG + chr4.1:76080764-76080783 MS.gene87496:CDS 25.0%
! TAATGATTGATGTTGAATCT+TGG + chr4.1:76080867-76080886 MS.gene87496:CDS 25.0%
! TACTTATAATTAAACGCCAA+AGG - chr4.1:76080631-76080650 None:intergenic 25.0%
!! TTGTCTTCCTTATGATATTT+TGG + chr4.1:76081093-76081112 MS.gene87496:CDS 25.0%
!! TTTGTTTAAGATGGTCAATT+TGG - chr4.1:76079992-76080011 None:intergenic 25.0%
!!! TATGATATTTTGGATGCTAT+AGG + chr4.1:76081103-76081122 MS.gene87496:CDS 25.0%
AAACTAGAATCCATAGACAT+AGG - chr4.1:76081136-76081155 None:intergenic 30.0%
AACTAGAATCCATAGACATA+GGG - chr4.1:76081135-76081154 None:intergenic 30.0%
AACTATTACGGTAATGACTT+TGG + chr4.1:76080965-76080984 MS.gene87496:CDS 30.0%
AATAATGAAGAAACAATGGG+AGG - chr4.1:76080191-76080210 None:intergenic 30.0%
AATGCAAAAAGGGGAATTAA+TGG + chr4.1:76080775-76080794 MS.gene87496:CDS 30.0%
AATTGCTATGGAAATGAACA+AGG + chr4.1:76080814-76080833 MS.gene87496:CDS 30.0%
ATACTTTGGTTGAAGTATGT+CGG - chr4.1:76080165-76080184 None:intergenic 30.0%
ATCAAAATCTCATCATGAGA+AGG + chr4.1:76080844-76080863 MS.gene87496:CDS 30.0%
ATTCTTGTCCTACAATCTAT+GGG - chr4.1:76080695-76080714 None:intergenic 30.0%
GGATCTCAAATTTCTCAAAT+TGG + chr4.1:76079923-76079942 MS.gene87496:CDS 30.0%
GTTGGACTTCAAAGAAATAT+TGG + chr4.1:76081019-76081038 MS.gene87496:CDS 30.0%
! GAATTTGTTCCTTTGTAAAG+TGG - chr4.1:76080511-76080530 None:intergenic 30.0%
!!! AATTATTTTGGGAGTGGAAT+CGG + chr4.1:76080734-76080753 MS.gene87496:CDS 30.0%
!!! ATGGTCAATTTGGTTTGTTT+TGG - chr4.1:76079982-76080001 None:intergenic 30.0%
!!! TGGTCAATTTGGTTTGTTTT+GGG - chr4.1:76079981-76080000 None:intergenic 30.0%
!!! TTTGGTTTGTTTTGGGTTTA+TGG - chr4.1:76079974-76079993 None:intergenic 30.0%
AAAGGGGAATTAATGGAAAG+TGG + chr4.1:76080782-76080801 MS.gene87496:CDS 35.0%
AAGCCTATTGCAGTTAGAAA+TGG + chr4.1:76080995-76081014 MS.gene87496:CDS 35.0%
AAGGGGAATTAATGGAAAGT+GGG + chr4.1:76080783-76080802 MS.gene87496:CDS 35.0%
AATGATGTGAAAAGCTACGA+AGG + chr4.1:76080218-76080237 MS.gene87496:CDS 35.0%
ACAATCCAAGCAACAAATCA+TGG + chr4.1:76079852-76079871 MS.gene87496:CDS 35.0%
AGCCTATTGCAGTTAGAAAT+GGG + chr4.1:76080996-76081015 MS.gene87496:CDS 35.0%
AGGCAAGTGTTTGTTTAAGA+TGG - chr4.1:76080001-76080020 None:intergenic 35.0%
ATGGAAAAGAAGACCTCTTT+GGG - chr4.1:76079955-76079974 None:intergenic 35.0%
ATTAACCATGTGTGTGTAGA+CGG + chr4.1:76080308-76080327 MS.gene87496:CDS 35.0%
ATTACGGTAATGACTTTGGT+TGG + chr4.1:76080969-76080988 MS.gene87496:CDS 35.0%
ATTGGTAGAGTTATTGTGCT+TGG + chr4.1:76081037-76081056 MS.gene87496:CDS 35.0%
CAAGTAACAGAGTTAATCGA+CGG + chr4.1:76080266-76080285 MS.gene87496:CDS 35.0%
CATTCTTGTCCTACAATCTA+TGG - chr4.1:76080696-76080715 None:intergenic 35.0%
GAATTAATGGAAAGTGGGAT+TGG + chr4.1:76080788-76080807 MS.gene87496:CDS 35.0%
GTTGAAAACCCCGTTTATAT+CGG + chr4.1:76080889-76080908 MS.gene87496:CDS 35.0%
TAGTGGAAAGAAGTTAAGTG+TGG - chr4.1:76080024-76080043 None:intergenic 35.0%
TATGGAAAAGAAGACCTCTT+TGG - chr4.1:76079956-76079975 None:intergenic 35.0%
TCGAAAGAAGGAACTATTGT+TGG - chr4.1:76080392-76080411 None:intergenic 35.0%
TCGAATCTTCCACTTTACAA+AGG + chr4.1:76080499-76080518 MS.gene87496:CDS 35.0%
TTAATCGACGGTATCTTCAT+TGG + chr4.1:76080278-76080297 MS.gene87496:CDS 35.0%
TTACGGTAATGACTTTGGTT+GGG + chr4.1:76080970-76080989 MS.gene87496:CDS 35.0%
TTGGCATTTCATCAACTCTT+GGG + chr4.1:76080340-76080359 MS.gene87496:CDS 35.0%
TTTGGCATTTCATCAACTCT+TGG + chr4.1:76080339-76080358 MS.gene87496:CDS 35.0%
TTTGTGAAAGGAAACCGTAT+GGG - chr4.1:76080443-76080462 None:intergenic 35.0%
! AGATTACTTGATGATCTACC+TGG - chr4.1:76080917-76080936 None:intergenic 35.0%
! GTTACAAATGATGGAACATG+AGG - chr4.1:76080093-76080112 None:intergenic 35.0%
! TGGGATTGGTAAAATTGCTA+TGG + chr4.1:76080802-76080821 MS.gene87496:CDS 35.0%
! TTGAGAAATTTGAGATCCCA+TGG - chr4.1:76079921-76079940 None:intergenic 35.0%
! TTTTGCACATCCTTTGTGAA+AGG - chr4.1:76080455-76080474 None:intergenic 35.0%
!! AGGAACTATTGTTGGCTTAT+TGG - chr4.1:76080384-76080403 None:intergenic 35.0%
!!! GAAGAGAATTATTTTGGGAG+TGG + chr4.1:76080728-76080747 MS.gene87496:CDS 35.0%
AAAAGAAGACCTCTTTGGGT+TGG - chr4.1:76079951-76079970 None:intergenic 40.0%
ACAATGGGAGGAACATACTT+TGG - chr4.1:76080179-76080198 None:intergenic 40.0%
ACAATGTTAACCGTCCCATA+CGG + chr4.1:76080426-76080445 MS.gene87496:CDS 40.0%
ACCAGCGTTGTTACAAATGA+TGG - chr4.1:76080102-76080121 None:intergenic 40.0%
ACCCCATTTCTAACTGCAAT+AGG - chr4.1:76081001-76081020 None:intergenic 40.0%
ATGGGACGGTTAACATTGTT+TGG - chr4.1:76080425-76080444 None:intergenic 40.0%
ATTGCAGTTAGAAATGGGGT+TGG + chr4.1:76081001-76081020 MS.gene87496:CDS 40.0%
CAAGCAACAAATCATGGTGA+TGG + chr4.1:76079858-76079877 MS.gene87496:CDS 40.0%
CATACGGTTTCCTTTCACAA+AGG + chr4.1:76080442-76080461 MS.gene87496:CDS 40.0%
CTTTGTGAAAGGAAACCGTA+TGG - chr4.1:76080444-76080463 None:intergenic 40.0%
GCCTATTGCAGTTAGAAATG+GGG + chr4.1:76080997-76081016 MS.gene87496:CDS 40.0%
GTTACTTGTACTGCAAGTAG+TGG - chr4.1:76080254-76080273 None:intergenic 40.0%
TACGGTAATGACTTTGGTTG+GGG + chr4.1:76080971-76080990 MS.gene87496:CDS 40.0%
TCACCACGGTTCAACTATTA+CGG + chr4.1:76080953-76080972 MS.gene87496:CDS 40.0%
TCCATCATTTGTAACAACGC+TGG + chr4.1:76080098-76080117 MS.gene87496:CDS 40.0%
TCGTCTTACCCATAGATTGT+AGG + chr4.1:76080684-76080703 MS.gene87496:CDS 40.0%
TGGAAAGAAGTTAAGTGTGG+AGG - chr4.1:76080021-76080040 None:intergenic 40.0%
TTACCGTAATAGTTGAACCG+TGG - chr4.1:76080959-76080978 None:intergenic 40.0%
!! AAGCGCTTTTAAGTCACCTT+TGG + chr4.1:76080612-76080631 MS.gene87496:CDS 40.0%
!! AATGGTAGTGTTTTCTGCTG+TGG - chr4.1:76080141-76080160 None:intergenic 40.0%
!! ACAAATCATGGTGATGGTGA+TGG + chr4.1:76079864-76079883 MS.gene87496:CDS 40.0%
!! CATCACCATGATTTGTTGCT+TGG - chr4.1:76079860-76079879 None:intergenic 40.0%
AAATTGGCACCAACCCAAAG+AGG + chr4.1:76079939-76079958 MS.gene87496:CDS 45.0%
AACTTCTTTCCACTACTCGC+TGG + chr4.1:76080029-76080048 MS.gene87496:CDS 45.0%
ACGAATGCAGACCTTTCTTC+TGG - chr4.1:76080668-76080687 None:intergenic 45.0%
AGGAAACGACCCTATGTCTA+TGG + chr4.1:76081123-76081142 MS.gene87496:CDS 45.0%
CTACCTGGCTCCGATATAAA+CGG - chr4.1:76080902-76080921 None:intergenic 45.0%
GGTAGAGTTATTGTGCTTGG+TGG + chr4.1:76081040-76081059 MS.gene87496:CDS 45.0%
TACCTGGCTCCGATATAAAC+GGG - chr4.1:76080901-76080920 None:intergenic 45.0%
TAGTTCCTTCTTTCGAACGC+TGG + chr4.1:76080396-76080415 MS.gene87496:CDS 45.0%
TCTTGGGCTGAAATCTCACA+AGG + chr4.1:76080356-76080375 MS.gene87496:CDS 45.0%
TGAAAGGAAACCGTATGGGA+CGG - chr4.1:76080439-76080458 None:intergenic 45.0%
TGATAGCAAGCAGTTCACCA+CGG + chr4.1:76080939-76080958 MS.gene87496:CDS 45.0%
TGGTTGAAGTATGTCGGCAA+TGG - chr4.1:76080159-76080178 None:intergenic 45.0%
! GTGTAGACGGCAAGTCATTT+TGG + chr4.1:76080321-76080340 MS.gene87496:CDS 45.0%
ACCTGGCTCCGATATAAACG+GGG - chr4.1:76080900-76080919 None:intergenic 50.0%
ACTTGCCGTCTACACACACA+TGG - chr4.1:76080316-76080335 None:intergenic 50.0%
GGAAACCAGCGTTCGAAAGA+AGG - chr4.1:76080404-76080423 None:intergenic 50.0%
! TAGTGTTTTCTGCTGTGGCG+TGG - chr4.1:76080136-76080155 None:intergenic 50.0%
!! ATGGAACATGAGGCGTTGCT+AGG - chr4.1:76080083-76080102 None:intergenic 50.0%
ACAAGACGACCAGCGAGTAG+TGG - chr4.1:76080041-76080060 None:intergenic 55.0%
ACCCCGTTTATATCGGAGCC+AGG + chr4.1:76080896-76080915 MS.gene87496:CDS 55.0%
!! GTGCTTGGTGGTGCAGAAGA+AGG + chr4.1:76081052-76081071 MS.gene87496:CDS 55.0%
GGGAGTGGAATCGGAGCAAC+TGG + chr4.1:76080743-76080762 MS.gene87496:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 76079822 76081186 76079822 ID=MS.gene87496
chr4.1 mRNA 76079822 76081186 76079822 ID=MS.gene87496.t1;Parent=MS.gene87496
chr4.1 exon 76079822 76081186 76079822 ID=MS.gene87496.t1.exon1;Parent=MS.gene87496.t1
chr4.1 CDS 76079822 76081186 76079822 ID=cds.MS.gene87496.t1;Parent=MS.gene87496.t1
Gene Sequence

>MS.gene87496

ATGACAGAGATTCAACTTATCTCAACTTCTACAATCCAAGCAACAAATCATGGTGATGGTGATGGCAACTCAACTCACAAAATTGTTCATTTATCTCCATGGGATCTCAAATTTCTCAAATTGGCACCAACCCAAAGAGGTCTTCTTTTCCATAAACCCAAAACAAACCAAATTGACCATCTTAAACAAACACTTGCCTCCACACTTAACTTCTTTCCACTACTCGCTGGTCGTCTTGTAATAACACAACACGACGAACCTAGCAACGCCTCATGTTCCATCATTTGTAACAACGCTGGTGCATTGTTTGTCCACGCCACAGCAGAAAACACTACCATTGCCGACATACTTCAACCAAAGTATGTTCCTCCCATTGTTTCTTCATTATTCTTACTCAATGATGTGAAAAGCTACGAAGGCACGTCACAACCACTACTTGCAGTACAAGTAACAGAGTTAATCGACGGTATCTTCATTGGTTTTGCAATTAACCATGTGTGTGTAGACGGCAAGTCATTTTGGCATTTCATCAACTCTTGGGCTGAAATCTCACAAGGTTCCAATAAGCCAACAATAGTTCCTTCTTTCGAACGCTGGTTTCCAAACAATGTTAACCGTCCCATACGGTTTCCTTTCACAAAGGATGTGCAAAATCAACAGTGTGAAGTTTCGTCTCATCGAATCTTCCACTTTACAAAGGAACAAATTCTGCAACTCAAATCAAAAGCTAATGCAGAAATTAGTAGTAGTAGTTGTAGTAATGATAAAATAATAACGATATCTTCATTGCAAGCGCTTTTAAGTCACCTTTGGCGTTTAATTATAAGTAAACAAAATCTTAAACCAGAAGAAAGGTCTGCATTCGTCTTACCCATAGATTGTAGGACAAGAATGTGTCCAAAGTTAGAAGAGAATTATTTTGGGAGTGGAATCGGAGCAACTGGATATGTAATAATGCAAAAAGGGGAATTAATGGAAAGTGGGATTGGTAAAATTGCTATGGAAATGAACAAGGAGATTTCATCAAAATCTCATCATGAGAAGGTAATGATTGATGTTGAATCTTGGTTGAAAACCCCGTTTATATCGGAGCCAGGTAGATCATCAAGTAATCTTTTGATAGCAAGCAGTTCACCACGGTTCAACTATTACGGTAATGACTTTGGTTGGGGTAAGCCTATTGCAGTTAGAAATGGGGTTGGACTTCAAAGAAATATTGGTAGAGTTATTGTGCTTGGTGGTGCAGAAGAAGGTAGTATTGATATTGAAGTTTGTCTTCCTTATGATATTTTGGATGCTATAGGAAACGACCCTATGTCTATGGATTCTAGTTTCATCAATAATGCTATTGAAACACATGCTTGA

Protein sequence

>MS.gene87496.t1

MTEIQLISTSTIQATNHGDGDGNSTHKIVHLSPWDLKFLKLAPTQRGLLFHKPKTNQIDHLKQTLASTLNFFPLLAGRLVITQHDEPSNASCSIICNNAGALFVHATAENTTIADILQPKYVPPIVSSLFLLNDVKSYEGTSQPLLAVQVTELIDGIFIGFAINHVCVDGKSFWHFINSWAEISQGSNKPTIVPSFERWFPNNVNRPIRFPFTKDVQNQQCEVSSHRIFHFTKEQILQLKSKANAEISSSSCSNDKIITISSLQALLSHLWRLIISKQNLKPEERSAFVLPIDCRTRMCPKLEENYFGSGIGATGYVIMQKGELMESGIGKIAMEMNKEISSKSHHEKVMIDVESWLKTPFISEPGRSSSNLLIASSSPRFNYYGNDFGWGKPIAVRNGVGLQRNIGRVIVLGGAEEGSIDIEVCLPYDILDAIGNDPMSMDSSFINNAIETHA