Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69966.t1 | RHN41843.1 | 87.7 | 342 | 41 | 1 | 25 | 365 | 1 | 342 | 4.50E-103 | 384.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69966.t1 | Q8GYH5 | 48.0 | 306 | 150 | 3 | 31 | 329 | 1 | 304 | 3.1e-12 | 74.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69966.t1 | G7L8Q1 | 87.7 | 342 | 41 | 1 | 25 | 365 | 1 | 342 | 3.2e-103 | 384.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene69966 | -0.80128 | 9.70E-49 | -1.69E-46 |
MS.gene049171 | MS.gene69966 | -0.809878 | 1.52E-50 | -1.69E-46 |
MS.gene049549 | MS.gene69966 | 0.840035 | 1.11E-57 | -1.69E-46 |
MS.gene049609 | MS.gene69966 | -0.804174 | 2.45E-49 | -1.69E-46 |
MS.gene049805 | MS.gene69966 | -0.803901 | 2.79E-49 | -1.69E-46 |
MS.gene050095 | MS.gene69966 | 0.828354 | 9.42E-55 | -1.69E-46 |
MS.gene050096 | MS.gene69966 | 0.808594 | 2.87E-50 | -1.69E-46 |
MS.gene050538 | MS.gene69966 | -0.801755 | 7.75E-49 | -1.69E-46 |
MS.gene050593 | MS.gene69966 | -0.811598 | 6.46E-51 | -1.69E-46 |
MS.gene050720 | MS.gene69966 | 0.822872 | 1.88E-53 | -1.69E-46 |
MS.gene050747 | MS.gene69966 | -0.817118 | 3.89E-52 | -1.69E-46 |
MS.gene050772 | MS.gene69966 | -0.809541 | 1.80E-50 | -1.69E-46 |
MS.gene050868 | MS.gene69966 | -0.804395 | 2.20E-49 | -1.69E-46 |
MS.gene050871 | MS.gene69966 | -0.80437 | 2.23E-49 | -1.69E-46 |
MS.gene050950 | MS.gene69966 | -0.815904 | 7.28E-52 | -1.69E-46 |
MS.gene05104 | MS.gene69966 | 0.823969 | 1.04E-53 | -1.69E-46 |
MS.gene051131 | MS.gene69966 | 0.820256 | 7.55E-53 | -1.69E-46 |
MS.gene051138 | MS.gene69966 | 0.811371 | 7.24E-51 | -1.69E-46 |
MS.gene051874 | MS.gene69966 | -0.812095 | 5.04E-51 | -1.69E-46 |
MS.gene051996 | MS.gene69966 | 0.804914 | 1.72E-49 | -1.69E-46 |
MS.gene052164 | MS.gene69966 | -0.805831 | 1.10E-49 | -1.69E-46 |
MS.gene052211 | MS.gene69966 | 0.851274 | 9.87E-61 | -1.69E-46 |
MS.gene052212 | MS.gene69966 | 0.818455 | 1.94E-52 | -1.69E-46 |
MS.gene05240 | MS.gene69966 | 0.869367 | 3.26E-66 | -1.69E-46 |
MS.gene05244 | MS.gene69966 | 0.82463 | 7.27E-54 | -1.69E-46 |
MS.gene052501 | MS.gene69966 | -0.807385 | 5.19E-50 | -1.69E-46 |
MS.gene052503 | MS.gene69966 | -0.808235 | 3.42E-50 | -1.69E-46 |
MS.gene052505 | MS.gene69966 | -0.810693 | 1.02E-50 | -1.69E-46 |
MS.gene052606 | MS.gene69966 | 0.815284 | 1.00E-51 | -1.69E-46 |
MS.gene052615 | MS.gene69966 | -0.813428 | 2.57E-51 | -1.69E-46 |
MS.gene052823 | MS.gene69966 | -0.808875 | 2.50E-50 | -1.69E-46 |
MS.gene052825 | MS.gene69966 | -0.806367 | 8.52E-50 | -1.69E-46 |
MS.gene053030 | MS.gene69966 | 0.818044 | 2.41E-52 | -1.69E-46 |
MS.gene053031 | MS.gene69966 | 0.82551 | 4.51E-54 | -1.69E-46 |
MS.gene053033 | MS.gene69966 | 0.815659 | 8.26E-52 | -1.69E-46 |
MS.gene053203 | MS.gene69966 | -0.818384 | 2.02E-52 | -1.69E-46 |
MS.gene053213 | MS.gene69966 | -0.800422 | 1.45E-48 | -1.69E-46 |
MS.gene053403 | MS.gene69966 | 0.822628 | 2.14E-53 | -1.69E-46 |
MS.gene053406 | MS.gene69966 | 0.873452 | 1.46E-67 | -1.69E-46 |
MS.gene053436 | MS.gene69966 | -0.809181 | 2.15E-50 | -1.69E-46 |
MS.gene053479 | MS.gene69966 | -0.801418 | 9.09E-49 | -1.69E-46 |
MS.gene053488 | MS.gene69966 | 0.802789 | 4.75E-49 | -1.69E-46 |
MS.gene053574 | MS.gene69966 | -0.81198 | 5.34E-51 | -1.69E-46 |
MS.gene053887 | MS.gene69966 | 0.814101 | 1.83E-51 | -1.69E-46 |
MS.gene054146 | MS.gene69966 | 0.841433 | 4.77E-58 | -1.69E-46 |
MS.gene054147 | MS.gene69966 | 0.810238 | 1.27E-50 | -1.69E-46 |
MS.gene054277 | MS.gene69966 | 0.822051 | 2.91E-53 | -1.69E-46 |
MS.gene054408 | MS.gene69966 | -0.805025 | 1.63E-49 | -1.69E-46 |
MS.gene054421 | MS.gene69966 | 0.829998 | 3.76E-55 | -1.69E-46 |
MS.gene054595 | MS.gene69966 | -0.808285 | 3.34E-50 | -1.69E-46 |
MS.gene05470 | MS.gene69966 | -0.809048 | 2.29E-50 | -1.69E-46 |
MS.gene054742 | MS.gene69966 | 0.846789 | 1.74E-59 | -1.69E-46 |
MS.gene05483 | MS.gene69966 | 0.821053 | 4.95E-53 | -1.69E-46 |
MS.gene054884 | MS.gene69966 | 0.813476 | 2.51E-51 | -1.69E-46 |
MS.gene055240 | MS.gene69966 | 0.829771 | 4.27E-55 | -1.69E-46 |
MS.gene055577 | MS.gene69966 | -0.805124 | 1.55E-49 | -1.69E-46 |
MS.gene05589 | MS.gene69966 | -0.806377 | 8.47E-50 | -1.69E-46 |
MS.gene056076 | MS.gene69966 | 0.821998 | 3.00E-53 | -1.69E-46 |
MS.gene056218 | MS.gene69966 | 0.826051 | 3.35E-54 | -1.69E-46 |
MS.gene056359 | MS.gene69966 | 0.801079 | 1.07E-48 | -1.69E-46 |
MS.gene056590 | MS.gene69966 | 0.816661 | 4.93E-52 | -1.69E-46 |
MS.gene056591 | MS.gene69966 | 0.819089 | 1.39E-52 | -1.69E-46 |
MS.gene056680 | MS.gene69966 | 0.804171 | 2.46E-49 | -1.69E-46 |
MS.gene056748 | MS.gene69966 | 0.821374 | 4.18E-53 | -1.69E-46 |
MS.gene056877 | MS.gene69966 | -0.803526 | 3.34E-49 | -1.69E-46 |
MS.gene056920 | MS.gene69966 | 0.845976 | 2.90E-59 | -1.69E-46 |
MS.gene056922 | MS.gene69966 | 0.815654 | 8.27E-52 | -1.69E-46 |
MS.gene057261 | MS.gene69966 | 0.823528 | 1.32E-53 | -1.69E-46 |
MS.gene057416 | MS.gene69966 | -0.80519 | 1.50E-49 | -1.69E-46 |
MS.gene057544 | MS.gene69966 | 0.816577 | 5.15E-52 | -1.69E-46 |
MS.gene057547 | MS.gene69966 | 0.806625 | 7.51E-50 | -1.69E-46 |
MS.gene057550 | MS.gene69966 | 0.800578 | 1.35E-48 | -1.69E-46 |
MS.gene057820 | MS.gene69966 | 0.802605 | 5.18E-49 | -1.69E-46 |
MS.gene05837 | MS.gene69966 | -0.819677 | 1.02E-52 | -1.69E-46 |
MS.gene058419 | MS.gene69966 | -0.803091 | 4.11E-49 | -1.69E-46 |
MS.gene058450 | MS.gene69966 | 0.810948 | 8.94E-51 | -1.69E-46 |
MS.gene058544 | MS.gene69966 | -0.811407 | 7.11E-51 | -1.69E-46 |
MS.gene058603 | MS.gene69966 | 0.821647 | 3.61E-53 | -1.69E-46 |
MS.gene058838 | MS.gene69966 | -0.819391 | 1.19E-52 | -1.69E-46 |
MS.gene059023 | MS.gene69966 | -0.80862 | 2.83E-50 | -1.69E-46 |
MS.gene059265 | MS.gene69966 | 0.814672 | 1.37E-51 | -1.69E-46 |
MS.gene059865 | MS.gene69966 | -0.801639 | 8.19E-49 | -1.69E-46 |
MS.gene059892 | MS.gene69966 | 0.803015 | 4.26E-49 | -1.69E-46 |
MS.gene059953 | MS.gene69966 | 0.828593 | 8.25E-55 | -1.69E-46 |
MS.gene059955 | MS.gene69966 | 0.838727 | 2.42E-57 | -1.69E-46 |
MS.gene060087 | MS.gene69966 | 0.84225 | 2.90E-58 | -1.69E-46 |
MS.gene060593 | MS.gene69966 | 0.800827 | 1.20E-48 | -1.69E-46 |
MS.gene06077 | MS.gene69966 | -0.806741 | 7.10E-50 | -1.69E-46 |
MS.gene060835 | MS.gene69966 | -0.808494 | 3.01E-50 | -1.69E-46 |
MS.gene06092 | MS.gene69966 | -0.801829 | 7.49E-49 | -1.69E-46 |
MS.gene061038 | MS.gene69966 | 0.821899 | 3.16E-53 | -1.69E-46 |
MS.gene061094 | MS.gene69966 | 0.803461 | 3.45E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69966.t1 | MTR_8g073260 | 92.398 | 342 | 25 | 1 | 25 | 365 | 1 | 342 | 0.0 | 647 |
MS.gene69966.t1 | MTR_3g016210 | 61.345 | 357 | 119 | 4 | 25 | 363 | 1 | 356 | 2.11e-152 | 437 |
MS.gene69966.t1 | MTR_8g039620 | 63.610 | 349 | 118 | 5 | 25 | 364 | 1 | 349 | 3.17e-151 | 434 |
MS.gene69966.t1 | MTR_8g072510 | 62.682 | 343 | 124 | 3 | 25 | 364 | 1 | 342 | 3.56e-150 | 431 |
MS.gene69966.t1 | MTR_1g059930 | 63.988 | 336 | 117 | 1 | 34 | 365 | 11 | 346 | 4.52e-150 | 431 |
MS.gene69966.t1 | MTR_7g451420 | 66.343 | 309 | 104 | 0 | 34 | 342 | 8 | 316 | 7.98e-145 | 413 |
MS.gene69966.t1 | MTR_8g073275 | 62.953 | 359 | 53 | 7 | 77 | 365 | 1 | 349 | 7.57e-140 | 405 |
MS.gene69966.t1 | MTR_7g021090 | 58.309 | 343 | 131 | 4 | 25 | 363 | 1 | 335 | 4.24e-136 | 394 |
MS.gene69966.t1 | MTR_8g068990 | 59.347 | 337 | 117 | 5 | 34 | 364 | 11 | 333 | 3.26e-131 | 383 |
MS.gene69966.t1 | MTR_8g062410 | 60.000 | 345 | 125 | 6 | 25 | 364 | 1 | 337 | 1.48e-128 | 376 |
MS.gene69966.t1 | MTR_8g069880 | 58.601 | 343 | 136 | 5 | 28 | 366 | 1 | 341 | 6.60e-127 | 373 |
MS.gene69966.t1 | MTR_8g467780 | 57.100 | 331 | 132 | 1 | 25 | 345 | 1 | 331 | 7.93e-126 | 370 |
MS.gene69966.t1 | MTR_8g066670 | 59.538 | 346 | 133 | 5 | 23 | 364 | 1065 | 1407 | 9.30e-123 | 386 |
MS.gene69966.t1 | MTR_8g040930 | 60.678 | 295 | 110 | 3 | 77 | 365 | 1 | 295 | 4.97e-121 | 355 |
MS.gene69966.t1 | MTR_8g041240 | 60.678 | 295 | 110 | 3 | 77 | 365 | 1 | 295 | 4.97e-121 | 355 |
MS.gene69966.t1 | MTR_3g105650 | 53.333 | 315 | 136 | 3 | 28 | 335 | 1 | 311 | 1.25e-115 | 342 |
MS.gene69966.t1 | MTR_1g069110 | 26.944 | 360 | 214 | 10 | 20 | 364 | 5 | 330 | 5.81e-27 | 111 |
MS.gene69966.t1 | MTR_7g099580 | 25.150 | 334 | 190 | 9 | 38 | 357 | 15 | 302 | 4.54e-24 | 101 |
MS.gene69966.t1 | MTR_7g099570 | 26.357 | 258 | 166 | 5 | 38 | 280 | 12 | 260 | 7.33e-19 | 88.6 |
MS.gene69966.t1 | MTR_2g101320 | 27.982 | 218 | 139 | 4 | 63 | 272 | 134 | 341 | 6.32e-18 | 85.5 |
MS.gene69966.t1 | MTR_7g117620 | 26.481 | 287 | 177 | 7 | 70 | 334 | 119 | 393 | 8.44e-17 | 82.0 |
MS.gene69966.t1 | MTR_1g115575 | 26.087 | 299 | 180 | 7 | 70 | 342 | 169 | 452 | 1.04e-16 | 82.0 |
MS.gene69966.t1 | MTR_4g062100 | 25.000 | 288 | 180 | 6 | 71 | 334 | 109 | 384 | 1.30e-15 | 78.6 |
MS.gene69966.t1 | MTR_2g101310 | 26.728 | 217 | 139 | 4 | 66 | 273 | 137 | 342 | 6.11e-15 | 76.3 |
MS.gene69966.t1 | MTR_2g101310 | 26.852 | 216 | 140 | 4 | 66 | 273 | 137 | 342 | 7.38e-15 | 76.3 |
MS.gene69966.t1 | MTR_7g100430 | 26.101 | 318 | 181 | 12 | 68 | 335 | 124 | 437 | 7.47e-15 | 76.3 |
MS.gene69966.t1 | MTR_2g096190 | 25.155 | 322 | 169 | 10 | 37 | 334 | 107 | 380 | 6.07e-14 | 73.6 |
MS.gene69966.t1 | MTR_7g100390 | 25.882 | 340 | 180 | 11 | 18 | 334 | 72 | 362 | 2.81e-12 | 68.2 |
MS.gene69966.t1 | MTR_8g105260 | 23.793 | 290 | 184 | 5 | 70 | 334 | 101 | 378 | 3.94e-12 | 67.8 |
MS.gene69966.t1 | MTR_5g085500 | 29.114 | 158 | 100 | 4 | 104 | 257 | 8 | 157 | 2.41e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69966.t1 | AT4G10720 | 45.820 | 323 | 167 | 2 | 31 | 345 | 1 | 323 | 1.29e-96 | 293 |
MS.gene69966.t1 | AT4G10720 | 44.606 | 343 | 173 | 3 | 31 | 365 | 1 | 334 | 2.40e-96 | 294 |
MS.gene69966.t1 | AT1G14500 | 41.141 | 333 | 187 | 2 | 31 | 354 | 1 | 333 | 3.98e-85 | 265 |
MS.gene69966.t1 | AT1G14480 | 40.308 | 325 | 184 | 2 | 31 | 345 | 1 | 325 | 1.32e-78 | 248 |
MS.gene69966.t1 | AT5G15500 | 41.471 | 340 | 184 | 5 | 35 | 366 | 6 | 338 | 1.61e-77 | 246 |
MS.gene69966.t1 | AT5G54620 | 41.667 | 312 | 169 | 4 | 31 | 332 | 1 | 309 | 3.12e-75 | 239 |
MS.gene69966.t1 | AT5G54610 | 40.523 | 306 | 173 | 3 | 31 | 329 | 1 | 304 | 5.00e-73 | 233 |
MS.gene69966.t1 | AT1G14480 | 38.576 | 337 | 167 | 7 | 31 | 362 | 1 | 302 | 7.78e-60 | 198 |
MS.gene69966.t1 | AT5G15500 | 36.820 | 239 | 136 | 5 | 136 | 366 | 1 | 232 | 3.56e-38 | 140 |
MS.gene69966.t1 | AT5G51160 | 31.673 | 281 | 160 | 6 | 83 | 341 | 31 | 301 | 7.54e-37 | 138 |
MS.gene69966.t1 | AT1G10340 | 25.000 | 368 | 166 | 10 | 69 | 338 | 73 | 428 | 9.39e-18 | 85.1 |
MS.gene69966.t1 | AT1G10340 | 30.000 | 240 | 120 | 7 | 135 | 338 | 205 | 432 | 1.47e-17 | 84.7 |
MS.gene69966.t1 | AT3G09550 | 25.648 | 347 | 207 | 11 | 20 | 335 | 131 | 457 | 8.40e-16 | 79.3 |
MS.gene69966.t1 | AT3G09550 | 25.648 | 347 | 207 | 11 | 20 | 335 | 131 | 457 | 8.40e-16 | 79.3 |
MS.gene69966.t1 | AT2G24600 | 27.698 | 278 | 160 | 9 | 94 | 338 | 163 | 432 | 9.16e-16 | 79.0 |
MS.gene69966.t1 | AT2G24600 | 27.698 | 278 | 160 | 9 | 94 | 338 | 163 | 432 | 9.16e-16 | 79.0 |
MS.gene69966.t1 | AT3G09550 | 25.648 | 347 | 207 | 11 | 20 | 335 | 138 | 464 | 9.36e-16 | 79.0 |
MS.gene69966.t1 | AT2G24600 | 27.698 | 278 | 160 | 9 | 94 | 338 | 163 | 432 | 1.22e-15 | 78.6 |
MS.gene69966.t1 | AT2G24600 | 27.698 | 278 | 160 | 9 | 94 | 338 | 163 | 432 | 1.22e-15 | 78.6 |
MS.gene69966.t1 | AT4G03500 | 23.988 | 321 | 155 | 9 | 69 | 335 | 217 | 502 | 1.87e-15 | 78.2 |
MS.gene69966.t1 | AT4G03500 | 23.988 | 321 | 155 | 9 | 69 | 335 | 194 | 479 | 2.17e-15 | 78.2 |
MS.gene69966.t1 | AT4G03500 | 23.988 | 321 | 155 | 9 | 69 | 335 | 194 | 479 | 2.17e-15 | 78.2 |
MS.gene69966.t1 | AT5G54700 | 30.493 | 223 | 115 | 9 | 121 | 338 | 17 | 204 | 8.17e-15 | 75.1 |
MS.gene69966.t1 | AT5G54710 | 26.877 | 253 | 130 | 9 | 121 | 338 | 219 | 451 | 9.90e-15 | 75.9 |
MS.gene69966.t1 | AT5G54710 | 26.877 | 253 | 130 | 9 | 121 | 338 | 264 | 496 | 1.08e-14 | 75.9 |
MS.gene69966.t1 | AT1G05640 | 24.432 | 352 | 181 | 11 | 68 | 334 | 114 | 465 | 1.20e-14 | 75.9 |
MS.gene69966.t1 | AT3G12360 | 25.439 | 342 | 168 | 12 | 68 | 346 | 118 | 435 | 1.62e-14 | 75.1 |
MS.gene69966.t1 | AT3G12360 | 25.439 | 342 | 168 | 12 | 68 | 346 | 130 | 447 | 1.72e-14 | 75.1 |
MS.gene69966.t1 | AT4G03460 | 27.468 | 233 | 115 | 7 | 128 | 340 | 292 | 490 | 2.41e-14 | 74.7 |
MS.gene69966.t1 | AT4G03460 | 27.468 | 233 | 115 | 7 | 128 | 340 | 260 | 458 | 2.77e-14 | 74.7 |
MS.gene69966.t1 | AT4G03490 | 26.518 | 313 | 159 | 12 | 69 | 335 | 180 | 467 | 7.98e-14 | 73.2 |
MS.gene69966.t1 | AT5G54700 | 26.190 | 294 | 140 | 9 | 50 | 338 | 20 | 241 | 8.10e-14 | 72.8 |
MS.gene69966.t1 | AT2G31820 | 24.390 | 287 | 183 | 6 | 70 | 334 | 227 | 501 | 8.42e-14 | 73.2 |
MS.gene69966.t1 | AT5G02620 | 24.742 | 291 | 180 | 6 | 71 | 334 | 95 | 373 | 8.54e-14 | 72.8 |
MS.gene69966.t1 | AT5G02620 | 24.742 | 291 | 180 | 6 | 71 | 334 | 95 | 373 | 8.54e-14 | 72.8 |
MS.gene69966.t1 | AT5G02620 | 24.742 | 291 | 180 | 6 | 71 | 334 | 95 | 373 | 8.54e-14 | 72.8 |
MS.gene69966.t1 | AT1G34050 | 23.897 | 272 | 185 | 6 | 79 | 338 | 162 | 423 | 9.83e-14 | 72.8 |
MS.gene69966.t1 | AT4G03490 | 26.518 | 313 | 159 | 12 | 69 | 335 | 180 | 467 | 1.02e-13 | 72.8 |
MS.gene69966.t1 | AT4G03490 | 26.518 | 313 | 159 | 12 | 69 | 335 | 170 | 457 | 1.29e-13 | 72.4 |
MS.gene69966.t1 | AT5G50140 | 26.829 | 205 | 124 | 5 | 66 | 254 | 26 | 220 | 1.61e-13 | 72.0 |
MS.gene69966.t1 | AT1G07710 | 24.739 | 287 | 181 | 7 | 71 | 334 | 105 | 379 | 8.60e-12 | 67.0 |
MS.gene69966.t1 | AT1G07710 | 24.739 | 287 | 181 | 7 | 71 | 334 | 105 | 379 | 8.60e-12 | 67.0 |
MS.gene69966.t1 | AT5G60070 | 26.623 | 154 | 110 | 2 | 37 | 189 | 114 | 265 | 6.21e-11 | 64.3 |
Find 62 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAACATCTTCGATCGAATT+TGG | 0.197403 | 8.1:-32444370 | None:intergenic |
TCATAATTTCAGTGGCAAAT+TGG | 0.236402 | 8.1:-32444135 | None:intergenic |
GAAATTAATACTTAATTATA+AGG | 0.240344 | 8.1:+32444507 | MS.gene69966:CDS |
AGCACTAAACAATGACTTAA+AGG | 0.246988 | 8.1:+32444561 | MS.gene69966:CDS |
CACCACTTCTTTGATTTCTA+AGG | 0.264459 | 8.1:+32445386 | MS.gene69966:CDS |
TGAGGAGGATCCATATGTTT+TGG | 0.280435 | 8.1:+32444048 | MS.gene69966:CDS |
TCTTAATTTATCTTCAAGTT+TGG | 0.313621 | 8.1:-32445175 | None:intergenic |
TAGTAATATACCCTTGATTT+CGG | 0.324028 | 8.1:-32445112 | None:intergenic |
CTCTTCATGTCTTGGTTGGT+TGG | 0.334379 | 8.1:+32444446 | MS.gene69966:CDS |
AACGAAGCACCATACTCTTT+TGG | 0.338315 | 8.1:-32444231 | None:intergenic |
TCGTTTCGTAGACATGAATA+AGG | 0.350127 | 8.1:+32444249 | MS.gene69966:CDS |
TCTATATATTCCAAAACATA+TGG | 0.396171 | 8.1:-32444058 | None:intergenic |
GCAAAACAACCAAAAGAGTA+TGG | 0.398876 | 8.1:+32444222 | MS.gene69966:CDS |
GATTGAAATCTTCATTTGCT+TGG | 0.413951 | 8.1:+32444158 | MS.gene69966:CDS |
GTTTGAAGCTCTTCATGTCT+TGG | 0.417575 | 8.1:+32444438 | MS.gene69966:CDS |
AGCAGCAAGTGCCGAAATCA+AGG | 0.421794 | 8.1:+32445101 | MS.gene69966:CDS |
GAAGCTCTTCATGTCTTGGT+TGG | 0.429930 | 8.1:+32444442 | MS.gene69966:CDS |
TGTAGAGGAGTTTCAACAAA+TGG | 0.445043 | 8.1:-32444088 | None:intergenic |
GTGAAGGTTGCAACTCTAGA+AGG | 0.445366 | 8.1:+32443998 | MS.gene69966:CDS |
TCTACATATAGCTGCATCAA+TGG | 0.456263 | 8.1:+32444105 | MS.gene69966:CDS |
TCTTTGATTTCTAAGGAAGT+TGG | 0.463599 | 8.1:+32445393 | MS.gene69966:CDS |
CCAACTCCCTAGCACCTCTC+TGG | 0.465296 | 8.1:-32444483 | None:intergenic |
CTTAATTATAAGGATGAGAA+AGG | 0.474353 | 8.1:+32444517 | MS.gene69966:CDS |
CTTTGCATTCAAATTTACCT+TGG | 0.475404 | 8.1:-32445049 | None:intergenic |
AAGGAACTTGTTAGAATCAA+AGG | 0.479455 | 8.1:+32444268 | MS.gene69966:CDS |
CTTCATCTTGCTTGTCAAAG+TGG | 0.481775 | 8.1:+32444310 | MS.gene69966:CDS |
TTCACAGGCGCTTCGACTGT+TGG | 0.486468 | 8.1:+32445020 | MS.gene69966:intron |
CCAGAGAGGTGCTAGGGAGT+TGG | 0.487334 | 8.1:+32444483 | MS.gene69966:CDS |
CTACATATAGCTGCATCAAT+GGG | 0.510700 | 8.1:+32444106 | MS.gene69966:CDS |
AAGGGTATATTACTAAGTGC+TGG | 0.522957 | 8.1:+32445120 | MS.gene69966:CDS |
GGTAAATCAGTTATTTCTGA+AGG | 0.526141 | 8.1:+32445414 | MS.gene69966:CDS |
CCTTCTCTATGCACTAATTG+AGG | 0.528799 | 8.1:+32444030 | MS.gene69966:CDS |
TTCCTTAGAAATCAAAGAAG+TGG | 0.529376 | 8.1:-32445388 | None:intergenic |
CAAATCGCCAGAGAGGTGCT+AGG | 0.534314 | 8.1:+32444476 | MS.gene69966:CDS |
GTTAGAATCAAAGGAAGGGA+AGG | 0.542029 | 8.1:+32444277 | MS.gene69966:CDS |
GGAGTTTATCAAGGTAATGC+AGG | 0.543139 | 8.1:+32445342 | MS.gene69966:CDS |
AAATCGCCAGAGAGGTGCTA+GGG | 0.545317 | 8.1:+32444477 | MS.gene69966:CDS |
TTTCAATCTCATAATTTCAG+TGG | 0.552567 | 8.1:-32444143 | None:intergenic |
CCAAGCTCAAAAGTCAAAGA+TGG | 0.559102 | 8.1:+32445150 | MS.gene69966:CDS |
CTTTGACAAGCAAGATGAAG+AGG | 0.564320 | 8.1:-32444307 | None:intergenic |
GATCGAAGATGTTACTCTGA+GGG | 0.576263 | 8.1:+32444378 | MS.gene69966:CDS |
AACTTGTTAGAATCAAAGGA+AGG | 0.583415 | 8.1:+32444272 | MS.gene69966:CDS |
TTACCTTGATAAACTCCACC+AGG | 0.585352 | 8.1:-32445336 | None:intergenic |
CCTCAATTAGTGCATAGAGA+AGG | 0.593426 | 8.1:-32444030 | None:intergenic |
GCTTGGAAGCTAAATCAACA+AGG | 0.604414 | 8.1:+32444175 | MS.gene69966:CDS |
ACTTGTTAGAATCAAAGGAA+GGG | 0.615429 | 8.1:+32444273 | MS.gene69966:CDS |
GCAGCAAGTGCCGAAATCAA+GGG | 0.615626 | 8.1:+32445102 | MS.gene69966:CDS |
TGATATTGATTACAAAGTGA+AGG | 0.624755 | 8.1:+32443982 | MS.gene69966:CDS |
CTTGGAAGCTAAATCAACAA+GGG | 0.626538 | 8.1:+32444176 | MS.gene69966:CDS |
GCTCTTAAATAAGCACCCAC+AGG | 0.632200 | 8.1:-32443920 | None:intergenic |
ATTGATGCAGCTATATGTAG+AGG | 0.639713 | 8.1:-32444103 | None:intergenic |
CGATCGAAGATGTTACTCTG+AGG | 0.644610 | 8.1:+32444377 | MS.gene69966:CDS |
TCTCTATGCACTAATTGAGG+AGG | 0.654089 | 8.1:+32444033 | MS.gene69966:CDS |
ATCGAAGATGTTACTCTGAG+GGG | 0.654189 | 8.1:+32444379 | MS.gene69966:CDS |
TGAAACAAGAAATGTTCCTG+TGG | 0.656060 | 8.1:+32443904 | MS.gene69966:CDS |
TACCTTGATAAACTCCACCA+GGG | 0.669953 | 8.1:-32445335 | None:intergenic |
TCGACTGTTGGTAAAGACCA+AGG | 0.673714 | 8.1:+32445032 | MS.gene69966:CDS |
GAAACAAGAAATGTTCCTGT+GGG | 0.682960 | 8.1:+32443905 | MS.gene69966:CDS |
ACCTTGATAAACTCCACCAG+GGG | 0.689637 | 8.1:-32445334 | None:intergenic |
TATTAGAAAAGATATATCAG+AGG | 0.690330 | 8.1:+32445242 | MS.gene69966:CDS |
TTGAAGACAAATCGCCAGAG+AGG | 0.694700 | 8.1:+32444469 | MS.gene69966:CDS |
CCTTGATAAACTCCACCAGG+GGG | 0.739127 | 8.1:-32445333 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAATATACTAAATAGA+AGG | - | chr8.1:32444590-32444609 | None:intergenic | 10.0% |
!! | GAAATTAATACTTAATTATA+AGG | + | chr8.1:32444507-32444526 | MS.gene69966:CDS | 10.0% |
!!! | TTATTTTTGATGAATAACTA+TGG | + | chr8.1:32444605-32444624 | MS.gene69966:intron | 15.0% |
!! | AAAAAAAAAAAAACGAGACA+TGG | - | chr8.1:32444667-32444686 | None:intergenic | 20.0% |
!! | ACAAATAAAGAGATATAAAG+AGG | - | chr8.1:32444848-32444867 | None:intergenic | 20.0% |
!! | CAAATAAAAAGTTAGCTAAA+AGG | - | chr8.1:32444345-32444364 | None:intergenic | 20.0% |
!! | TATTAGAAAAGATATATCAG+AGG | + | chr8.1:32445242-32445261 | MS.gene69966:CDS | 20.0% |
!! | TCTATATATTCCAAAACATA+TGG | - | chr8.1:32444061-32444080 | None:intergenic | 20.0% |
!!! | ATAACAACTATTTTATTCAC+AGG | + | chr8.1:32445005-32445024 | MS.gene69966:intron | 20.0% |
!!! | ATGTCTCGTTTTTTTTTTTT+TGG | + | chr8.1:32444666-32444685 | MS.gene69966:intron | 20.0% |
!!! | TCTTAATTTATCTTCAAGTT+TGG | - | chr8.1:32445178-32445197 | None:intergenic | 20.0% |
! | AAGTGTATTCAAAATTGACA+AGG | - | chr8.1:32445451-32445470 | None:intergenic | 25.0% |
! | CTTAATTATAAGGATGAGAA+AGG | + | chr8.1:32444517-32444536 | MS.gene69966:CDS | 25.0% |
! | TAGTAATATACCCTTGATTT+CGG | - | chr8.1:32445115-32445134 | None:intergenic | 25.0% |
! | TGTCAAAAGATATATTGTCA+AGG | - | chr8.1:32445490-32445509 | None:intergenic | 25.0% |
! | TTTCAATCTCATAATTTCAG+TGG | - | chr8.1:32444146-32444165 | None:intergenic | 25.0% |
!! | AAGATCAAATGTCACATTTT+TGG | + | chr8.1:32445194-32445213 | MS.gene69966:CDS | 25.0% |
!! | TGATATTGATTACAAAGTGA+AGG | + | chr8.1:32443982-32444001 | MS.gene69966:CDS | 25.0% |
!!! | CTCGTTTTTTTTTTTTTGGA+GGG | + | chr8.1:32444670-32444689 | MS.gene69966:intron | 25.0% |
!!! | GATATGTTAGTTCTAAATTG+AGG | + | chr8.1:32444908-32444927 | MS.gene69966:intron | 25.0% |
!!! | TCTCGTTTTTTTTTTTTTGG+AGG | + | chr8.1:32444669-32444688 | MS.gene69966:intron | 25.0% |
AAAAAAAAAACGAGACATGG+CGG | - | chr8.1:32444664-32444683 | None:intergenic | 30.0% | |
AAGAGGACATGTTAGAAAAA+TGG | - | chr8.1:32444831-32444850 | None:intergenic | 30.0% | |
AGCACTAAACAATGACTTAA+AGG | + | chr8.1:32444561-32444580 | MS.gene69966:CDS | 30.0% | |
CATGTGACATCACAAATTAT+AGG | - | chr8.1:32444871-32444890 | None:intergenic | 30.0% | |
CTTTGCATTCAAATTTACCT+TGG | - | chr8.1:32445052-32445071 | None:intergenic | 30.0% | |
GATTGAAATCTTCATTTGCT+TGG | + | chr8.1:32444158-32444177 | MS.gene69966:CDS | 30.0% | |
GCTTGCAAAGATTTAGTTAT+CGG | + | chr8.1:32444967-32444986 | MS.gene69966:intron | 30.0% | |
TCATAATTTCAGTGGCAAAT+TGG | - | chr8.1:32444138-32444157 | None:intergenic | 30.0% | |
TTAGAAAAATGGACCTTCTT+AGG | - | chr8.1:32444820-32444839 | None:intergenic | 30.0% | |
TTCCTTAGAAATCAAAGAAG+TGG | - | chr8.1:32445391-32445410 | None:intergenic | 30.0% | |
! | ACTTGTTAGAATCAAAGGAA+GGG | + | chr8.1:32444273-32444292 | MS.gene69966:CDS | 30.0% |
! | ATATATCTTTTGACACCAAG+TGG | + | chr8.1:32445495-32445514 | MS.gene69966:intron | 30.0% |
! | TATATCTTTTGACACCAAGT+GGG | + | chr8.1:32445496-32445515 | MS.gene69966:intron | 30.0% |
! | TCTTTGATTTCTAAGGAAGT+TGG | + | chr8.1:32445393-32445412 | MS.gene69966:CDS | 30.0% |
!! | AACTTGTTAGAATCAAAGGA+AGG | + | chr8.1:32444272-32444291 | MS.gene69966:CDS | 30.0% |
!! | AAGGAACTTGTTAGAATCAA+AGG | + | chr8.1:32444268-32444287 | MS.gene69966:CDS | 30.0% |
!! | GGTAAATCAGTTATTTCTGA+AGG | + | chr8.1:32445414-32445433 | MS.gene69966:CDS | 30.0% |
AAAACTAGGACAATATGCGT+TGG | + | chr8.1:32444771-32444790 | MS.gene69966:intron | 35.0% | |
ATGGTATGATTGAACCAAGA+TGG | + | chr8.1:32444624-32444643 | MS.gene69966:intron | 35.0% | |
ATTGAACCAAGATGGTGAAA+CGG | + | chr8.1:32444632-32444651 | MS.gene69966:intron | 35.0% | |
ATTGATGCAGCTATATGTAG+AGG | - | chr8.1:32444106-32444125 | None:intergenic | 35.0% | |
CTACATATAGCTGCATCAAT+GGG | + | chr8.1:32444106-32444125 | MS.gene69966:CDS | 35.0% | |
CTTGGAAGCTAAATCAACAA+GGG | + | chr8.1:32444176-32444195 | MS.gene69966:CDS | 35.0% | |
GAAACAAGAAATGTTCCTGT+GGG | + | chr8.1:32443905-32443924 | MS.gene69966:CDS | 35.0% | |
GAGAATTTGAACTGACAGAT+AGG | - | chr8.1:32444736-32444755 | None:intergenic | 35.0% | |
GCAAAACAACCAAAAGAGTA+TGG | + | chr8.1:32444222-32444241 | MS.gene69966:CDS | 35.0% | |
GTAACATCTTCGATCGAATT+TGG | - | chr8.1:32444373-32444392 | None:intergenic | 35.0% | |
TCGTTTCGTAGACATGAATA+AGG | + | chr8.1:32444249-32444268 | MS.gene69966:CDS | 35.0% | |
TCTACATATAGCTGCATCAA+TGG | + | chr8.1:32444105-32444124 | MS.gene69966:CDS | 35.0% | |
TGAAACAAGAAATGTTCCTG+TGG | + | chr8.1:32443904-32443923 | MS.gene69966:CDS | 35.0% | |
TGTAGAGGAGTTTCAACAAA+TGG | - | chr8.1:32444091-32444110 | None:intergenic | 35.0% | |
! | AAGGGTATATTACTAAGTGC+TGG | + | chr8.1:32445120-32445139 | MS.gene69966:CDS | 35.0% |
! | CACCACTTCTTTGATTTCTA+AGG | + | chr8.1:32445386-32445405 | MS.gene69966:CDS | 35.0% |
! | TCAATCCATTTTGCCTAAGA+AGG | + | chr8.1:32444804-32444823 | MS.gene69966:intron | 35.0% |
! | TCTTGTTTGTTAAGCGGTTT+AGG | + | chr8.1:32444701-32444720 | MS.gene69966:intron | 35.0% |
!! | ACCATGTCTTGTTTGTTAAG+CGG | + | chr8.1:32444695-32444714 | MS.gene69966:intron | 35.0% |
!! | ACTCTTTTGGTTGTTTTGCA+TGG | - | chr8.1:32444221-32444240 | None:intergenic | 35.0% |
!!! | ATTGTCCTAGTTTTTTGACG+AGG | - | chr8.1:32444765-32444784 | None:intergenic | 35.0% |
ACCGCTTAACAAACAAGACA+TGG | - | chr8.1:32444699-32444718 | None:intergenic | 40.0% | |
ATCGAAGATGTTACTCTGAG+GGG | + | chr8.1:32444379-32444398 | MS.gene69966:CDS | 40.0% | |
ATGGACCTTCTTAGGCAAAA+TGG | - | chr8.1:32444812-32444831 | None:intergenic | 40.0% | |
CCAAGCTCAAAAGTCAAAGA+TGG | + | chr8.1:32445150-32445169 | MS.gene69966:CDS | 40.0% | |
CCTCAATTAGTGCATAGAGA+AGG | - | chr8.1:32444033-32444052 | None:intergenic | 40.0% | |
CCTTCTCTATGCACTAATTG+AGG | + | chr8.1:32444030-32444049 | MS.gene69966:CDS | 40.0% | |
CTTCATCTTGCTTGTCAAAG+TGG | + | chr8.1:32444310-32444329 | MS.gene69966:CDS | 40.0% | |
CTTTGACAAGCAAGATGAAG+AGG | - | chr8.1:32444310-32444329 | None:intergenic | 40.0% | |
GATCGAAGATGTTACTCTGA+GGG | + | chr8.1:32444378-32444397 | MS.gene69966:CDS | 40.0% | |
GCTTGGAAGCTAAATCAACA+AGG | + | chr8.1:32444175-32444194 | MS.gene69966:CDS | 40.0% | |
GGAGTTTATCAAGGTAATGC+AGG | + | chr8.1:32445342-32445361 | MS.gene69966:CDS | 40.0% | |
GTTAGAATCAAAGGAAGGGA+AGG | + | chr8.1:32444277-32444296 | MS.gene69966:CDS | 40.0% | |
TACCTTGATAAACTCCACCA+GGG | - | chr8.1:32445338-32445357 | None:intergenic | 40.0% | |
TCTCTATGCACTAATTGAGG+AGG | + | chr8.1:32444033-32444052 | MS.gene69966:CDS | 40.0% | |
TTACCTTGATAAACTCCACC+AGG | - | chr8.1:32445339-32445358 | None:intergenic | 40.0% | |
TTGAACCAAGATGGTGAAAC+GGG | + | chr8.1:32444633-32444652 | MS.gene69966:intron | 40.0% | |
TTTGTTAAGCGGTTTAGGTG+GGG | + | chr8.1:32444706-32444725 | MS.gene69966:intron | 40.0% | |
! | GTTTGAAGCTCTTCATGTCT+TGG | + | chr8.1:32444438-32444457 | MS.gene69966:CDS | 40.0% |
! | GTTTGTTAAGCGGTTTAGGT+GGG | + | chr8.1:32444705-32444724 | MS.gene69966:intron | 40.0% |
! | TGAGGAGGATCCATATGTTT+TGG | + | chr8.1:32444048-32444067 | MS.gene69966:CDS | 40.0% |
! | TGTTTGTTAAGCGGTTTAGG+TGG | + | chr8.1:32444704-32444723 | MS.gene69966:intron | 40.0% |
!! | AACGAAGCACCATACTCTTT+TGG | - | chr8.1:32444234-32444253 | None:intergenic | 40.0% |
!! | CAAAATGGATTGAGCCTGAT+GGG | - | chr8.1:32444797-32444816 | None:intergenic | 40.0% |
!! | CCATCTTTGACTTTTGAGCT+TGG | - | chr8.1:32445153-32445172 | None:intergenic | 40.0% |
!! | TTTGGTTGTTTTGCATGGCA+AGG | - | chr8.1:32444216-32444235 | None:intergenic | 40.0% |
ACCTTGATAAACTCCACCAG+GGG | - | chr8.1:32445337-32445356 | None:intergenic | 45.0% | |
ACTCGCCTCGTCAAAAAACT+AGG | + | chr8.1:32444757-32444776 | MS.gene69966:intron | 45.0% | |
CGATCGAAGATGTTACTCTG+AGG | + | chr8.1:32444377-32444396 | MS.gene69966:CDS | 45.0% | |
CTCTTCATGTCTTGGTTGGT+TGG | + | chr8.1:32444446-32444465 | MS.gene69966:CDS | 45.0% | |
GAAGCTCTTCATGTCTTGGT+TGG | + | chr8.1:32444442-32444461 | MS.gene69966:CDS | 45.0% | |
GCTCTTAAATAAGCACCCAC+AGG | - | chr8.1:32443923-32443942 | None:intergenic | 45.0% | |
GTGAAGGTTGCAACTCTAGA+AGG | + | chr8.1:32443998-32444017 | MS.gene69966:CDS | 45.0% | |
TTGAAGACAAATCGCCAGAG+AGG | + | chr8.1:32444469-32444488 | MS.gene69966:CDS | 45.0% | |
! | TCGACTGTTGGTAAAGACCA+AGG | + | chr8.1:32445032-32445051 | MS.gene69966:CDS | 45.0% |
! | TTTTGCATGGCAAGGTGGAT+TGG | - | chr8.1:32444208-32444227 | None:intergenic | 45.0% |
!! | AAAAACGAGACATGGCGGAT+AGG | - | chr8.1:32444659-32444678 | None:intergenic | 45.0% |
!! | GCAAAATGGATTGAGCCTGA+TGG | - | chr8.1:32444798-32444817 | None:intergenic | 45.0% |
ATAGGCCCGTTTCACCATCT+TGG | - | chr8.1:32444641-32444660 | None:intergenic | 50.0% | |
CCTTGATAAACTCCACCAGG+GGG | - | chr8.1:32445336-32445355 | None:intergenic | 50.0% | |
TTAAGCGGTTTAGGTGGGGA+GGG | + | chr8.1:32444710-32444729 | MS.gene69966:intron | 50.0% | |
! | ACAATATGCGTTGGCCCATC+AGG | + | chr8.1:32444780-32444799 | MS.gene69966:intron | 50.0% |
!! | AAATCGCCAGAGAGGTGCTA+GGG | + | chr8.1:32444477-32444496 | MS.gene69966:CDS | 50.0% |
!! | AGCAGCAAGTGCCGAAATCA+AGG | + | chr8.1:32445101-32445120 | MS.gene69966:CDS | 50.0% |
!! | GCAGCAAGTGCCGAAATCAA+GGG | + | chr8.1:32445102-32445121 | MS.gene69966:CDS | 50.0% |
!! | GGTTGTTTTGCATGGCAAGG+TGG | - | chr8.1:32444213-32444232 | None:intergenic | 50.0% |
CCCCCTGGTGGAGTTTATCA+AGG | + | chr8.1:32445333-32445352 | MS.gene69966:CDS | 55.0% | |
GTTAAGCGGTTTAGGTGGGG+AGG | + | chr8.1:32444709-32444728 | MS.gene69966:intron | 55.0% | |
TTCACAGGCGCTTCGACTGT+TGG | + | chr8.1:32445020-32445039 | MS.gene69966:intron | 55.0% | |
!! | CAAATCGCCAGAGAGGTGCT+AGG | + | chr8.1:32444476-32444495 | MS.gene69966:CDS | 55.0% |
CCAACTCCCTAGCACCTCTC+TGG | - | chr8.1:32444486-32444505 | None:intergenic | 60.0% | |
! | CAATCAGCACTGAGTCCCCC+TGG | + | chr8.1:32445318-32445337 | MS.gene69966:CDS | 60.0% |
!! | CCAGAGAGGTGCTAGGGAGT+TGG | + | chr8.1:32444483-32444502 | MS.gene69966:CDS | 60.0% |
! | TCAGCACTGAGTCCCCCTGG+TGG | + | chr8.1:32445321-32445340 | MS.gene69966:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 32443896 | 32445522 | 32443896 | ID=MS.gene69966 |
chr8.1 | mRNA | 32443896 | 32445522 | 32443896 | ID=MS.gene69966.t1;Parent=MS.gene69966 |
chr8.1 | exon | 32443896 | 32444582 | 32443896 | ID=MS.gene69966.t1.exon1;Parent=MS.gene69966.t1 |
chr8.1 | CDS | 32443896 | 32444582 | 32443896 | ID=cds.MS.gene69966.t1;Parent=MS.gene69966.t1 |
chr8.1 | exon | 32445027 | 32445435 | 32445027 | ID=MS.gene69966.t1.exon2;Parent=MS.gene69966.t1 |
chr8.1 | CDS | 32445027 | 32445435 | 32445027 | ID=cds.MS.gene69966.t1;Parent=MS.gene69966.t1 |
chr8.1 | exon | 32445515 | 32445522 | 32445515 | ID=MS.gene69966.t1.exon3;Parent=MS.gene69966.t1 |
chr8.1 | CDS | 32445515 | 32445522 | 32445515 | ID=cds.MS.gene69966.t1;Parent=MS.gene69966.t1 |
Gene Sequence |
Protein sequence |