AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69966


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69966.t1 MTR_8g073260 92.398 342 25 1 25 365 1 342 0.0 647
MS.gene69966.t1 MTR_3g016210 61.345 357 119 4 25 363 1 356 2.11e-152 437
MS.gene69966.t1 MTR_8g039620 63.610 349 118 5 25 364 1 349 3.17e-151 434
MS.gene69966.t1 MTR_8g072510 62.682 343 124 3 25 364 1 342 3.56e-150 431
MS.gene69966.t1 MTR_1g059930 63.988 336 117 1 34 365 11 346 4.52e-150 431
MS.gene69966.t1 MTR_7g451420 66.343 309 104 0 34 342 8 316 7.98e-145 413
MS.gene69966.t1 MTR_8g073275 62.953 359 53 7 77 365 1 349 7.57e-140 405
MS.gene69966.t1 MTR_7g021090 58.309 343 131 4 25 363 1 335 4.24e-136 394
MS.gene69966.t1 MTR_8g068990 59.347 337 117 5 34 364 11 333 3.26e-131 383
MS.gene69966.t1 MTR_8g062410 60.000 345 125 6 25 364 1 337 1.48e-128 376
MS.gene69966.t1 MTR_8g069880 58.601 343 136 5 28 366 1 341 6.60e-127 373
MS.gene69966.t1 MTR_8g467780 57.100 331 132 1 25 345 1 331 7.93e-126 370
MS.gene69966.t1 MTR_8g066670 59.538 346 133 5 23 364 1065 1407 9.30e-123 386
MS.gene69966.t1 MTR_8g040930 60.678 295 110 3 77 365 1 295 4.97e-121 355
MS.gene69966.t1 MTR_8g041240 60.678 295 110 3 77 365 1 295 4.97e-121 355
MS.gene69966.t1 MTR_3g105650 53.333 315 136 3 28 335 1 311 1.25e-115 342
MS.gene69966.t1 MTR_1g069110 26.944 360 214 10 20 364 5 330 5.81e-27 111
MS.gene69966.t1 MTR_7g099580 25.150 334 190 9 38 357 15 302 4.54e-24 101
MS.gene69966.t1 MTR_7g099570 26.357 258 166 5 38 280 12 260 7.33e-19 88.6
MS.gene69966.t1 MTR_2g101320 27.982 218 139 4 63 272 134 341 6.32e-18 85.5
MS.gene69966.t1 MTR_7g117620 26.481 287 177 7 70 334 119 393 8.44e-17 82.0
MS.gene69966.t1 MTR_1g115575 26.087 299 180 7 70 342 169 452 1.04e-16 82.0
MS.gene69966.t1 MTR_4g062100 25.000 288 180 6 71 334 109 384 1.30e-15 78.6
MS.gene69966.t1 MTR_2g101310 26.728 217 139 4 66 273 137 342 6.11e-15 76.3
MS.gene69966.t1 MTR_2g101310 26.852 216 140 4 66 273 137 342 7.38e-15 76.3
MS.gene69966.t1 MTR_7g100430 26.101 318 181 12 68 335 124 437 7.47e-15 76.3
MS.gene69966.t1 MTR_2g096190 25.155 322 169 10 37 334 107 380 6.07e-14 73.6
MS.gene69966.t1 MTR_7g100390 25.882 340 180 11 18 334 72 362 2.81e-12 68.2
MS.gene69966.t1 MTR_8g105260 23.793 290 184 5 70 334 101 378 3.94e-12 67.8
MS.gene69966.t1 MTR_5g085500 29.114 158 100 4 104 257 8 157 2.41e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69966.t1 AT4G10720 45.820 323 167 2 31 345 1 323 1.29e-96 293
MS.gene69966.t1 AT4G10720 44.606 343 173 3 31 365 1 334 2.40e-96 294
MS.gene69966.t1 AT1G14500 41.141 333 187 2 31 354 1 333 3.98e-85 265
MS.gene69966.t1 AT1G14480 40.308 325 184 2 31 345 1 325 1.32e-78 248
MS.gene69966.t1 AT5G15500 41.471 340 184 5 35 366 6 338 1.61e-77 246
MS.gene69966.t1 AT5G54620 41.667 312 169 4 31 332 1 309 3.12e-75 239
MS.gene69966.t1 AT5G54610 40.523 306 173 3 31 329 1 304 5.00e-73 233
MS.gene69966.t1 AT1G14480 38.576 337 167 7 31 362 1 302 7.78e-60 198
MS.gene69966.t1 AT5G15500 36.820 239 136 5 136 366 1 232 3.56e-38 140
MS.gene69966.t1 AT5G51160 31.673 281 160 6 83 341 31 301 7.54e-37 138
MS.gene69966.t1 AT1G10340 25.000 368 166 10 69 338 73 428 9.39e-18 85.1
MS.gene69966.t1 AT1G10340 30.000 240 120 7 135 338 205 432 1.47e-17 84.7
MS.gene69966.t1 AT3G09550 25.648 347 207 11 20 335 131 457 8.40e-16 79.3
MS.gene69966.t1 AT3G09550 25.648 347 207 11 20 335 131 457 8.40e-16 79.3
MS.gene69966.t1 AT2G24600 27.698 278 160 9 94 338 163 432 9.16e-16 79.0
MS.gene69966.t1 AT2G24600 27.698 278 160 9 94 338 163 432 9.16e-16 79.0
MS.gene69966.t1 AT3G09550 25.648 347 207 11 20 335 138 464 9.36e-16 79.0
MS.gene69966.t1 AT2G24600 27.698 278 160 9 94 338 163 432 1.22e-15 78.6
MS.gene69966.t1 AT2G24600 27.698 278 160 9 94 338 163 432 1.22e-15 78.6
MS.gene69966.t1 AT4G03500 23.988 321 155 9 69 335 217 502 1.87e-15 78.2
MS.gene69966.t1 AT4G03500 23.988 321 155 9 69 335 194 479 2.17e-15 78.2
MS.gene69966.t1 AT4G03500 23.988 321 155 9 69 335 194 479 2.17e-15 78.2
MS.gene69966.t1 AT5G54700 30.493 223 115 9 121 338 17 204 8.17e-15 75.1
MS.gene69966.t1 AT5G54710 26.877 253 130 9 121 338 219 451 9.90e-15 75.9
MS.gene69966.t1 AT5G54710 26.877 253 130 9 121 338 264 496 1.08e-14 75.9
MS.gene69966.t1 AT1G05640 24.432 352 181 11 68 334 114 465 1.20e-14 75.9
MS.gene69966.t1 AT3G12360 25.439 342 168 12 68 346 118 435 1.62e-14 75.1
MS.gene69966.t1 AT3G12360 25.439 342 168 12 68 346 130 447 1.72e-14 75.1
MS.gene69966.t1 AT4G03460 27.468 233 115 7 128 340 292 490 2.41e-14 74.7
MS.gene69966.t1 AT4G03460 27.468 233 115 7 128 340 260 458 2.77e-14 74.7
MS.gene69966.t1 AT4G03490 26.518 313 159 12 69 335 180 467 7.98e-14 73.2
MS.gene69966.t1 AT5G54700 26.190 294 140 9 50 338 20 241 8.10e-14 72.8
MS.gene69966.t1 AT2G31820 24.390 287 183 6 70 334 227 501 8.42e-14 73.2
MS.gene69966.t1 AT5G02620 24.742 291 180 6 71 334 95 373 8.54e-14 72.8
MS.gene69966.t1 AT5G02620 24.742 291 180 6 71 334 95 373 8.54e-14 72.8
MS.gene69966.t1 AT5G02620 24.742 291 180 6 71 334 95 373 8.54e-14 72.8
MS.gene69966.t1 AT1G34050 23.897 272 185 6 79 338 162 423 9.83e-14 72.8
MS.gene69966.t1 AT4G03490 26.518 313 159 12 69 335 180 467 1.02e-13 72.8
MS.gene69966.t1 AT4G03490 26.518 313 159 12 69 335 170 457 1.29e-13 72.4
MS.gene69966.t1 AT5G50140 26.829 205 124 5 66 254 26 220 1.61e-13 72.0
MS.gene69966.t1 AT1G07710 24.739 287 181 7 71 334 105 379 8.60e-12 67.0
MS.gene69966.t1 AT1G07710 24.739 287 181 7 71 334 105 379 8.60e-12 67.0
MS.gene69966.t1 AT5G60070 26.623 154 110 2 37 189 114 265 6.21e-11 64.3

Find 62 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAACATCTTCGATCGAATT+TGG 0.197403 8.1:-32444370 None:intergenic
TCATAATTTCAGTGGCAAAT+TGG 0.236402 8.1:-32444135 None:intergenic
GAAATTAATACTTAATTATA+AGG 0.240344 8.1:+32444507 MS.gene69966:CDS
AGCACTAAACAATGACTTAA+AGG 0.246988 8.1:+32444561 MS.gene69966:CDS
CACCACTTCTTTGATTTCTA+AGG 0.264459 8.1:+32445386 MS.gene69966:CDS
TGAGGAGGATCCATATGTTT+TGG 0.280435 8.1:+32444048 MS.gene69966:CDS
TCTTAATTTATCTTCAAGTT+TGG 0.313621 8.1:-32445175 None:intergenic
TAGTAATATACCCTTGATTT+CGG 0.324028 8.1:-32445112 None:intergenic
CTCTTCATGTCTTGGTTGGT+TGG 0.334379 8.1:+32444446 MS.gene69966:CDS
AACGAAGCACCATACTCTTT+TGG 0.338315 8.1:-32444231 None:intergenic
TCGTTTCGTAGACATGAATA+AGG 0.350127 8.1:+32444249 MS.gene69966:CDS
TCTATATATTCCAAAACATA+TGG 0.396171 8.1:-32444058 None:intergenic
GCAAAACAACCAAAAGAGTA+TGG 0.398876 8.1:+32444222 MS.gene69966:CDS
GATTGAAATCTTCATTTGCT+TGG 0.413951 8.1:+32444158 MS.gene69966:CDS
GTTTGAAGCTCTTCATGTCT+TGG 0.417575 8.1:+32444438 MS.gene69966:CDS
AGCAGCAAGTGCCGAAATCA+AGG 0.421794 8.1:+32445101 MS.gene69966:CDS
GAAGCTCTTCATGTCTTGGT+TGG 0.429930 8.1:+32444442 MS.gene69966:CDS
TGTAGAGGAGTTTCAACAAA+TGG 0.445043 8.1:-32444088 None:intergenic
GTGAAGGTTGCAACTCTAGA+AGG 0.445366 8.1:+32443998 MS.gene69966:CDS
TCTACATATAGCTGCATCAA+TGG 0.456263 8.1:+32444105 MS.gene69966:CDS
TCTTTGATTTCTAAGGAAGT+TGG 0.463599 8.1:+32445393 MS.gene69966:CDS
CCAACTCCCTAGCACCTCTC+TGG 0.465296 8.1:-32444483 None:intergenic
CTTAATTATAAGGATGAGAA+AGG 0.474353 8.1:+32444517 MS.gene69966:CDS
CTTTGCATTCAAATTTACCT+TGG 0.475404 8.1:-32445049 None:intergenic
AAGGAACTTGTTAGAATCAA+AGG 0.479455 8.1:+32444268 MS.gene69966:CDS
CTTCATCTTGCTTGTCAAAG+TGG 0.481775 8.1:+32444310 MS.gene69966:CDS
TTCACAGGCGCTTCGACTGT+TGG 0.486468 8.1:+32445020 MS.gene69966:intron
CCAGAGAGGTGCTAGGGAGT+TGG 0.487334 8.1:+32444483 MS.gene69966:CDS
CTACATATAGCTGCATCAAT+GGG 0.510700 8.1:+32444106 MS.gene69966:CDS
AAGGGTATATTACTAAGTGC+TGG 0.522957 8.1:+32445120 MS.gene69966:CDS
GGTAAATCAGTTATTTCTGA+AGG 0.526141 8.1:+32445414 MS.gene69966:CDS
CCTTCTCTATGCACTAATTG+AGG 0.528799 8.1:+32444030 MS.gene69966:CDS
TTCCTTAGAAATCAAAGAAG+TGG 0.529376 8.1:-32445388 None:intergenic
CAAATCGCCAGAGAGGTGCT+AGG 0.534314 8.1:+32444476 MS.gene69966:CDS
GTTAGAATCAAAGGAAGGGA+AGG 0.542029 8.1:+32444277 MS.gene69966:CDS
GGAGTTTATCAAGGTAATGC+AGG 0.543139 8.1:+32445342 MS.gene69966:CDS
AAATCGCCAGAGAGGTGCTA+GGG 0.545317 8.1:+32444477 MS.gene69966:CDS
TTTCAATCTCATAATTTCAG+TGG 0.552567 8.1:-32444143 None:intergenic
CCAAGCTCAAAAGTCAAAGA+TGG 0.559102 8.1:+32445150 MS.gene69966:CDS
CTTTGACAAGCAAGATGAAG+AGG 0.564320 8.1:-32444307 None:intergenic
GATCGAAGATGTTACTCTGA+GGG 0.576263 8.1:+32444378 MS.gene69966:CDS
AACTTGTTAGAATCAAAGGA+AGG 0.583415 8.1:+32444272 MS.gene69966:CDS
TTACCTTGATAAACTCCACC+AGG 0.585352 8.1:-32445336 None:intergenic
CCTCAATTAGTGCATAGAGA+AGG 0.593426 8.1:-32444030 None:intergenic
GCTTGGAAGCTAAATCAACA+AGG 0.604414 8.1:+32444175 MS.gene69966:CDS
ACTTGTTAGAATCAAAGGAA+GGG 0.615429 8.1:+32444273 MS.gene69966:CDS
GCAGCAAGTGCCGAAATCAA+GGG 0.615626 8.1:+32445102 MS.gene69966:CDS
TGATATTGATTACAAAGTGA+AGG 0.624755 8.1:+32443982 MS.gene69966:CDS
CTTGGAAGCTAAATCAACAA+GGG 0.626538 8.1:+32444176 MS.gene69966:CDS
GCTCTTAAATAAGCACCCAC+AGG 0.632200 8.1:-32443920 None:intergenic
ATTGATGCAGCTATATGTAG+AGG 0.639713 8.1:-32444103 None:intergenic
CGATCGAAGATGTTACTCTG+AGG 0.644610 8.1:+32444377 MS.gene69966:CDS
TCTCTATGCACTAATTGAGG+AGG 0.654089 8.1:+32444033 MS.gene69966:CDS
ATCGAAGATGTTACTCTGAG+GGG 0.654189 8.1:+32444379 MS.gene69966:CDS
TGAAACAAGAAATGTTCCTG+TGG 0.656060 8.1:+32443904 MS.gene69966:CDS
TACCTTGATAAACTCCACCA+GGG 0.669953 8.1:-32445335 None:intergenic
TCGACTGTTGGTAAAGACCA+AGG 0.673714 8.1:+32445032 MS.gene69966:CDS
GAAACAAGAAATGTTCCTGT+GGG 0.682960 8.1:+32443905 MS.gene69966:CDS
ACCTTGATAAACTCCACCAG+GGG 0.689637 8.1:-32445334 None:intergenic
TATTAGAAAAGATATATCAG+AGG 0.690330 8.1:+32445242 MS.gene69966:CDS
TTGAAGACAAATCGCCAGAG+AGG 0.694700 8.1:+32444469 MS.gene69966:CDS
CCTTGATAAACTCCACCAGG+GGG 0.739127 8.1:-32445333 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATATACTAAATAGA+AGG - chr8.1:32444590-32444609 None:intergenic 10.0%
!! GAAATTAATACTTAATTATA+AGG + chr8.1:32444507-32444526 MS.gene69966:CDS 10.0%
!!! TTATTTTTGATGAATAACTA+TGG + chr8.1:32444605-32444624 MS.gene69966:intron 15.0%
!! AAAAAAAAAAAAACGAGACA+TGG - chr8.1:32444667-32444686 None:intergenic 20.0%
!! ACAAATAAAGAGATATAAAG+AGG - chr8.1:32444848-32444867 None:intergenic 20.0%
!! CAAATAAAAAGTTAGCTAAA+AGG - chr8.1:32444345-32444364 None:intergenic 20.0%
!! TATTAGAAAAGATATATCAG+AGG + chr8.1:32445242-32445261 MS.gene69966:CDS 20.0%
!! TCTATATATTCCAAAACATA+TGG - chr8.1:32444061-32444080 None:intergenic 20.0%
!!! ATAACAACTATTTTATTCAC+AGG + chr8.1:32445005-32445024 MS.gene69966:intron 20.0%
!!! ATGTCTCGTTTTTTTTTTTT+TGG + chr8.1:32444666-32444685 MS.gene69966:intron 20.0%
!!! TCTTAATTTATCTTCAAGTT+TGG - chr8.1:32445178-32445197 None:intergenic 20.0%
! AAGTGTATTCAAAATTGACA+AGG - chr8.1:32445451-32445470 None:intergenic 25.0%
! CTTAATTATAAGGATGAGAA+AGG + chr8.1:32444517-32444536 MS.gene69966:CDS 25.0%
! TAGTAATATACCCTTGATTT+CGG - chr8.1:32445115-32445134 None:intergenic 25.0%
! TGTCAAAAGATATATTGTCA+AGG - chr8.1:32445490-32445509 None:intergenic 25.0%
! TTTCAATCTCATAATTTCAG+TGG - chr8.1:32444146-32444165 None:intergenic 25.0%
!! AAGATCAAATGTCACATTTT+TGG + chr8.1:32445194-32445213 MS.gene69966:CDS 25.0%
!! TGATATTGATTACAAAGTGA+AGG + chr8.1:32443982-32444001 MS.gene69966:CDS 25.0%
!!! CTCGTTTTTTTTTTTTTGGA+GGG + chr8.1:32444670-32444689 MS.gene69966:intron 25.0%
!!! GATATGTTAGTTCTAAATTG+AGG + chr8.1:32444908-32444927 MS.gene69966:intron 25.0%
!!! TCTCGTTTTTTTTTTTTTGG+AGG + chr8.1:32444669-32444688 MS.gene69966:intron 25.0%
AAAAAAAAAACGAGACATGG+CGG - chr8.1:32444664-32444683 None:intergenic 30.0%
AAGAGGACATGTTAGAAAAA+TGG - chr8.1:32444831-32444850 None:intergenic 30.0%
AGCACTAAACAATGACTTAA+AGG + chr8.1:32444561-32444580 MS.gene69966:CDS 30.0%
CATGTGACATCACAAATTAT+AGG - chr8.1:32444871-32444890 None:intergenic 30.0%
CTTTGCATTCAAATTTACCT+TGG - chr8.1:32445052-32445071 None:intergenic 30.0%
GATTGAAATCTTCATTTGCT+TGG + chr8.1:32444158-32444177 MS.gene69966:CDS 30.0%
GCTTGCAAAGATTTAGTTAT+CGG + chr8.1:32444967-32444986 MS.gene69966:intron 30.0%
TCATAATTTCAGTGGCAAAT+TGG - chr8.1:32444138-32444157 None:intergenic 30.0%
TTAGAAAAATGGACCTTCTT+AGG - chr8.1:32444820-32444839 None:intergenic 30.0%
TTCCTTAGAAATCAAAGAAG+TGG - chr8.1:32445391-32445410 None:intergenic 30.0%
! ACTTGTTAGAATCAAAGGAA+GGG + chr8.1:32444273-32444292 MS.gene69966:CDS 30.0%
! ATATATCTTTTGACACCAAG+TGG + chr8.1:32445495-32445514 MS.gene69966:intron 30.0%
! TATATCTTTTGACACCAAGT+GGG + chr8.1:32445496-32445515 MS.gene69966:intron 30.0%
! TCTTTGATTTCTAAGGAAGT+TGG + chr8.1:32445393-32445412 MS.gene69966:CDS 30.0%
!! AACTTGTTAGAATCAAAGGA+AGG + chr8.1:32444272-32444291 MS.gene69966:CDS 30.0%
!! AAGGAACTTGTTAGAATCAA+AGG + chr8.1:32444268-32444287 MS.gene69966:CDS 30.0%
!! GGTAAATCAGTTATTTCTGA+AGG + chr8.1:32445414-32445433 MS.gene69966:CDS 30.0%
AAAACTAGGACAATATGCGT+TGG + chr8.1:32444771-32444790 MS.gene69966:intron 35.0%
ATGGTATGATTGAACCAAGA+TGG + chr8.1:32444624-32444643 MS.gene69966:intron 35.0%
ATTGAACCAAGATGGTGAAA+CGG + chr8.1:32444632-32444651 MS.gene69966:intron 35.0%
ATTGATGCAGCTATATGTAG+AGG - chr8.1:32444106-32444125 None:intergenic 35.0%
CTACATATAGCTGCATCAAT+GGG + chr8.1:32444106-32444125 MS.gene69966:CDS 35.0%
CTTGGAAGCTAAATCAACAA+GGG + chr8.1:32444176-32444195 MS.gene69966:CDS 35.0%
GAAACAAGAAATGTTCCTGT+GGG + chr8.1:32443905-32443924 MS.gene69966:CDS 35.0%
GAGAATTTGAACTGACAGAT+AGG - chr8.1:32444736-32444755 None:intergenic 35.0%
GCAAAACAACCAAAAGAGTA+TGG + chr8.1:32444222-32444241 MS.gene69966:CDS 35.0%
GTAACATCTTCGATCGAATT+TGG - chr8.1:32444373-32444392 None:intergenic 35.0%
TCGTTTCGTAGACATGAATA+AGG + chr8.1:32444249-32444268 MS.gene69966:CDS 35.0%
TCTACATATAGCTGCATCAA+TGG + chr8.1:32444105-32444124 MS.gene69966:CDS 35.0%
TGAAACAAGAAATGTTCCTG+TGG + chr8.1:32443904-32443923 MS.gene69966:CDS 35.0%
TGTAGAGGAGTTTCAACAAA+TGG - chr8.1:32444091-32444110 None:intergenic 35.0%
! AAGGGTATATTACTAAGTGC+TGG + chr8.1:32445120-32445139 MS.gene69966:CDS 35.0%
! CACCACTTCTTTGATTTCTA+AGG + chr8.1:32445386-32445405 MS.gene69966:CDS 35.0%
! TCAATCCATTTTGCCTAAGA+AGG + chr8.1:32444804-32444823 MS.gene69966:intron 35.0%
! TCTTGTTTGTTAAGCGGTTT+AGG + chr8.1:32444701-32444720 MS.gene69966:intron 35.0%
!! ACCATGTCTTGTTTGTTAAG+CGG + chr8.1:32444695-32444714 MS.gene69966:intron 35.0%
!! ACTCTTTTGGTTGTTTTGCA+TGG - chr8.1:32444221-32444240 None:intergenic 35.0%
!!! ATTGTCCTAGTTTTTTGACG+AGG - chr8.1:32444765-32444784 None:intergenic 35.0%
ACCGCTTAACAAACAAGACA+TGG - chr8.1:32444699-32444718 None:intergenic 40.0%
ATCGAAGATGTTACTCTGAG+GGG + chr8.1:32444379-32444398 MS.gene69966:CDS 40.0%
ATGGACCTTCTTAGGCAAAA+TGG - chr8.1:32444812-32444831 None:intergenic 40.0%
CCAAGCTCAAAAGTCAAAGA+TGG + chr8.1:32445150-32445169 MS.gene69966:CDS 40.0%
CCTCAATTAGTGCATAGAGA+AGG - chr8.1:32444033-32444052 None:intergenic 40.0%
CCTTCTCTATGCACTAATTG+AGG + chr8.1:32444030-32444049 MS.gene69966:CDS 40.0%
CTTCATCTTGCTTGTCAAAG+TGG + chr8.1:32444310-32444329 MS.gene69966:CDS 40.0%
CTTTGACAAGCAAGATGAAG+AGG - chr8.1:32444310-32444329 None:intergenic 40.0%
GATCGAAGATGTTACTCTGA+GGG + chr8.1:32444378-32444397 MS.gene69966:CDS 40.0%
GCTTGGAAGCTAAATCAACA+AGG + chr8.1:32444175-32444194 MS.gene69966:CDS 40.0%
GGAGTTTATCAAGGTAATGC+AGG + chr8.1:32445342-32445361 MS.gene69966:CDS 40.0%
GTTAGAATCAAAGGAAGGGA+AGG + chr8.1:32444277-32444296 MS.gene69966:CDS 40.0%
TACCTTGATAAACTCCACCA+GGG - chr8.1:32445338-32445357 None:intergenic 40.0%
TCTCTATGCACTAATTGAGG+AGG + chr8.1:32444033-32444052 MS.gene69966:CDS 40.0%
TTACCTTGATAAACTCCACC+AGG - chr8.1:32445339-32445358 None:intergenic 40.0%
TTGAACCAAGATGGTGAAAC+GGG + chr8.1:32444633-32444652 MS.gene69966:intron 40.0%
TTTGTTAAGCGGTTTAGGTG+GGG + chr8.1:32444706-32444725 MS.gene69966:intron 40.0%
! GTTTGAAGCTCTTCATGTCT+TGG + chr8.1:32444438-32444457 MS.gene69966:CDS 40.0%
! GTTTGTTAAGCGGTTTAGGT+GGG + chr8.1:32444705-32444724 MS.gene69966:intron 40.0%
! TGAGGAGGATCCATATGTTT+TGG + chr8.1:32444048-32444067 MS.gene69966:CDS 40.0%
! TGTTTGTTAAGCGGTTTAGG+TGG + chr8.1:32444704-32444723 MS.gene69966:intron 40.0%
!! AACGAAGCACCATACTCTTT+TGG - chr8.1:32444234-32444253 None:intergenic 40.0%
!! CAAAATGGATTGAGCCTGAT+GGG - chr8.1:32444797-32444816 None:intergenic 40.0%
!! CCATCTTTGACTTTTGAGCT+TGG - chr8.1:32445153-32445172 None:intergenic 40.0%
!! TTTGGTTGTTTTGCATGGCA+AGG - chr8.1:32444216-32444235 None:intergenic 40.0%
ACCTTGATAAACTCCACCAG+GGG - chr8.1:32445337-32445356 None:intergenic 45.0%
ACTCGCCTCGTCAAAAAACT+AGG + chr8.1:32444757-32444776 MS.gene69966:intron 45.0%
CGATCGAAGATGTTACTCTG+AGG + chr8.1:32444377-32444396 MS.gene69966:CDS 45.0%
CTCTTCATGTCTTGGTTGGT+TGG + chr8.1:32444446-32444465 MS.gene69966:CDS 45.0%
GAAGCTCTTCATGTCTTGGT+TGG + chr8.1:32444442-32444461 MS.gene69966:CDS 45.0%
GCTCTTAAATAAGCACCCAC+AGG - chr8.1:32443923-32443942 None:intergenic 45.0%
GTGAAGGTTGCAACTCTAGA+AGG + chr8.1:32443998-32444017 MS.gene69966:CDS 45.0%
TTGAAGACAAATCGCCAGAG+AGG + chr8.1:32444469-32444488 MS.gene69966:CDS 45.0%
! TCGACTGTTGGTAAAGACCA+AGG + chr8.1:32445032-32445051 MS.gene69966:CDS 45.0%
! TTTTGCATGGCAAGGTGGAT+TGG - chr8.1:32444208-32444227 None:intergenic 45.0%
!! AAAAACGAGACATGGCGGAT+AGG - chr8.1:32444659-32444678 None:intergenic 45.0%
!! GCAAAATGGATTGAGCCTGA+TGG - chr8.1:32444798-32444817 None:intergenic 45.0%
ATAGGCCCGTTTCACCATCT+TGG - chr8.1:32444641-32444660 None:intergenic 50.0%
CCTTGATAAACTCCACCAGG+GGG - chr8.1:32445336-32445355 None:intergenic 50.0%
TTAAGCGGTTTAGGTGGGGA+GGG + chr8.1:32444710-32444729 MS.gene69966:intron 50.0%
! ACAATATGCGTTGGCCCATC+AGG + chr8.1:32444780-32444799 MS.gene69966:intron 50.0%
!! AAATCGCCAGAGAGGTGCTA+GGG + chr8.1:32444477-32444496 MS.gene69966:CDS 50.0%
!! AGCAGCAAGTGCCGAAATCA+AGG + chr8.1:32445101-32445120 MS.gene69966:CDS 50.0%
!! GCAGCAAGTGCCGAAATCAA+GGG + chr8.1:32445102-32445121 MS.gene69966:CDS 50.0%
!! GGTTGTTTTGCATGGCAAGG+TGG - chr8.1:32444213-32444232 None:intergenic 50.0%
CCCCCTGGTGGAGTTTATCA+AGG + chr8.1:32445333-32445352 MS.gene69966:CDS 55.0%
GTTAAGCGGTTTAGGTGGGG+AGG + chr8.1:32444709-32444728 MS.gene69966:intron 55.0%
TTCACAGGCGCTTCGACTGT+TGG + chr8.1:32445020-32445039 MS.gene69966:intron 55.0%
!! CAAATCGCCAGAGAGGTGCT+AGG + chr8.1:32444476-32444495 MS.gene69966:CDS 55.0%
CCAACTCCCTAGCACCTCTC+TGG - chr8.1:32444486-32444505 None:intergenic 60.0%
! CAATCAGCACTGAGTCCCCC+TGG + chr8.1:32445318-32445337 MS.gene69966:CDS 60.0%
!! CCAGAGAGGTGCTAGGGAGT+TGG + chr8.1:32444483-32444502 MS.gene69966:CDS 60.0%
! TCAGCACTGAGTCCCCCTGG+TGG + chr8.1:32445321-32445340 MS.gene69966:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 32443896 32445522 32443896 ID=MS.gene69966
chr8.1 mRNA 32443896 32445522 32443896 ID=MS.gene69966.t1;Parent=MS.gene69966
chr8.1 exon 32443896 32444582 32443896 ID=MS.gene69966.t1.exon1;Parent=MS.gene69966.t1
chr8.1 CDS 32443896 32444582 32443896 ID=cds.MS.gene69966.t1;Parent=MS.gene69966.t1
chr8.1 exon 32445027 32445435 32445027 ID=MS.gene69966.t1.exon2;Parent=MS.gene69966.t1
chr8.1 CDS 32445027 32445435 32445027 ID=cds.MS.gene69966.t1;Parent=MS.gene69966.t1
chr8.1 exon 32445515 32445522 32445515 ID=MS.gene69966.t1.exon3;Parent=MS.gene69966.t1
chr8.1 CDS 32445515 32445522 32445515 ID=cds.MS.gene69966.t1;Parent=MS.gene69966.t1
Gene Sequence

>MS.gene69966

ATGACGTGTGAAACAAGAAATGTTCCTGTGGGTGCTTATTTAAGAGCTATGCATATAATTACAACTTCAAACATGAACACAATGAATGATATTGATTACAAAGTGAAGGTTGCAACTCTAGAAGGTGATATAAACCTTCTCTATGCACTAATTGAGGAGGATCCATATGTTTTGGAATATATAGATTTAATTCCATTTGTTGAAACTCCTCTACATATAGCTGCATCAATGGGACATGTCCAATTTGCCACTGAAATTATGAGATTGAAATCTTCATTTGCTTGGAAGCTAAATCAACAAGGGTTCAGTCCAATCCACCTTGCCATGCAAAACAACCAAAAGAGTATGGTGCTTCGTTTCGTAGACATGAATAAGGAACTTGTTAGAATCAAAGGAAGGGAAGGTTTAACTCCTCTTCATCTTGCTTGTCAAAGTGGAGAAATTGACCTTTTAGCTAACTTTTTATTTGTTTGTCCAAATTCGATCGAAGATGTTACTCTGAGGGGTGAGACTGCACTTCATATTTCTGTCAAAAATAAACAGTTTGAAGCTCTTCATGTCTTGGTTGGTTGGTTGAAGACAAATCGCCAGAGAGGTGCTAGGGAGTTGGAGAAATTAATACTTAATTATAAGGATGAGAAAGGAAACACTATTTTGCATATTTCAGCACTAAACAATGACTTAAAGGTAACCTTCTATTTAGTATATTTTATTTTTGATGAATAACTATGGTATGATTGAACCAAGATGGTGAAACGGGCCTATCCGCCATGTCTCGTTTTTTTTTTTTTGGAGGGAAACCATGTCTTGTTTGTTAAGCGGTTTAGGTGGGGAGGGCCTATCTGTCAGTTCAAATTCTCAACTCGCCTCGTCAAAAAACTAGGACAATATGCGTTGGCCCATCAGGCTCAATCCATTTTGCCTAAGAAGGTCCATTTTTCTAACATGTCCTCTTTATATCTCTTTATTTGTCCTATAATTTGTGATGTCACATGAAAGAAAAGACATAACAGATATGTTAGTTCTAAATTGAGGCTGAGATGCTGTTACAGTCTTTTAAAACTATTACTTGCTTGCAAAGATTTAGTTATCGGTTAGAGAAATGATTGATAACAACTATTTTATTCACAGGCGCTTCGACTGTTGGTAAAGACCAAGGTAAATTTGAATGCAAAGAATTCAGAGAACTCAACAGCATTAGACTTAGCAGCAAGTGCCGAAATCAAGGGTATATTACTAAGTGCTGGAGCAAAACCAAGCTCAAAAGTCAAAGATGGCTCCAAACTTGAAGATAAATTAAGATCAAATGTCACATTTTTGGATAAAATGTTAATTCATATACTGCGTATTAGAAAAGATATATCAGAGGAACAACGCAACGCTTTTCTAATAGTTGCGACTCTTATTGCAACTGCTACATATCAATCAGCACTGAGTCCCCCTGGTGGAGTTTATCAAGGTAATGCAGGAGACAATAACAATGTGAAAAACACCACTTCTTTGATTTCTAAGGAAGTTGGTAAATCAGTTATTTCTGAAGGTGATTTTTTTACCTTGTCAATTTTGAATACACTTTCACTTCTGTTATCAACCTTGACAATATATCTTTTGACACCAAGTGGGTTAA

Protein sequence

>MS.gene69966.t1

MTCETRNVPVGAYLRAMHIITTSNMNTMNDIDYKVKVATLEGDINLLYALIEEDPYVLEYIDLIPFVETPLHIAASMGHVQFATEIMRLKSSFAWKLNQQGFSPIHLAMQNNQKSMVLRFVDMNKELVRIKGREGLTPLHLACQSGEIDLLANFLFVCPNSIEDVTLRGETALHISVKNKQFEALHVLVGWLKTNRQRGARELEKLILNYKDEKGNTILHISALNNDLKALRLLVKTKVNLNAKNSENSTALDLAASAEIKGILLSAGAKPSSKVKDGSKLEDKLRSNVTFLDKMLIHILRIRKDISEEQRNAFLIVATLIATATYQSALSPPGGVYQGNAGDNNNVKNTTSLISKEVGKSVISEVG