Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49350.t1 | XP_013468583.1 | 86 | 242 | 5 | 2 | 3 | 215 | 4 | 245 | 1.20E-108 | 402.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49350.t1 | P13089 | 75.5 | 208 | 37 | 7 | 17 | 215 | 41 | 243 | 2.2e-74 | 280.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49350.t1 | B7FGL7 | 86.0 | 242 | 5 | 2 | 3 | 215 | 4 | 245 | 8.8e-109 | 402.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49350.t1 | TR | AUX/IAA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene49350 | 0.858288 | 9.13E-63 | -1.69E-46 |
| MS.gene049356 | MS.gene49350 | 0.826064 | 3.33E-54 | -1.69E-46 |
| MS.gene049369 | MS.gene49350 | 0.815348 | 9.68E-52 | -1.69E-46 |
| MS.gene049491 | MS.gene49350 | 0.812113 | 4.99E-51 | -1.69E-46 |
| MS.gene049661 | MS.gene49350 | 0.804935 | 1.70E-49 | -1.69E-46 |
| MS.gene049662 | MS.gene49350 | 0.805226 | 1.48E-49 | -1.69E-46 |
| MS.gene049681 | MS.gene49350 | 0.810141 | 1.34E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene49350 | 0.830702 | 2.53E-55 | -1.69E-46 |
| MS.gene049907 | MS.gene49350 | 0.803198 | 3.91E-49 | -1.69E-46 |
| MS.gene049910 | MS.gene49350 | 0.811482 | 6.85E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene49350 | 0.801476 | 8.85E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene49350 | 0.8189 | 1.54E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene49350 | 0.847102 | 1.43E-59 | -1.69E-46 |
| MS.gene050397 | MS.gene49350 | 0.813206 | 2.88E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene49350 | 0.850161 | 2.03E-60 | -1.69E-46 |
| MS.gene050670 | MS.gene49350 | 0.835204 | 1.92E-56 | -1.69E-46 |
| MS.gene050900 | MS.gene49350 | 0.808787 | 2.61E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene49350 | 0.817029 | 4.08E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene49350 | 0.851496 | 8.55E-61 | -1.69E-46 |
| MS.gene051255 | MS.gene49350 | 0.814619 | 1.40E-51 | -1.69E-46 |
| MS.gene051360 | MS.gene49350 | 0.830729 | 2.49E-55 | -1.69E-46 |
| MS.gene051525 | MS.gene49350 | 0.818572 | 1.83E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene49350 | 0.808957 | 2.40E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene49350 | 0.8117 | 6.14E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene49350 | -0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene052188 | MS.gene49350 | 0.838239 | 3.24E-57 | -1.69E-46 |
| MS.gene052207 | MS.gene49350 | 0.82219 | 2.70E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene49350 | 0.843794 | 1.13E-58 | -1.69E-46 |
| MS.gene052287 | MS.gene49350 | 0.836455 | 9.27E-57 | -1.69E-46 |
| MS.gene052310 | MS.gene49350 | 0.823405 | 1.41E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene49350 | 0.852786 | 3.67E-61 | -1.69E-46 |
| MS.gene052481 | MS.gene49350 | 0.814095 | 1.83E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene49350 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene49350 | 0.858763 | 6.59E-63 | -1.69E-46 |
| MS.gene052999 | MS.gene49350 | 0.80764 | 4.58E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene49350 | 0.851062 | 1.13E-60 | -1.69E-46 |
| MS.gene053449 | MS.gene49350 | 0.821263 | 4.43E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene49350 | 0.803725 | 3.04E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene49350 | 0.853188 | 2.82E-61 | -1.69E-46 |
| MS.gene053836 | MS.gene49350 | 0.825929 | 3.58E-54 | -1.69E-46 |
| MS.gene054010 | MS.gene49350 | 0.842607 | 2.33E-58 | -1.69E-46 |
| MS.gene054011 | MS.gene49350 | 0.827355 | 1.64E-54 | -1.69E-46 |
| MS.gene054012 | MS.gene49350 | 0.825317 | 5.01E-54 | -1.69E-46 |
| MS.gene054013 | MS.gene49350 | 0.830419 | 2.97E-55 | -1.69E-46 |
| MS.gene054183 | MS.gene49350 | 0.808999 | 2.35E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene49350 | 0.801803 | 7.58E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene49350 | 0.830307 | 3.16E-55 | -1.69E-46 |
| MS.gene054542 | MS.gene49350 | 0.800703 | 1.27E-48 | -1.69E-46 |
| MS.gene054556 | MS.gene49350 | 0.808924 | 2.44E-50 | -1.69E-46 |
| MS.gene05455 | MS.gene49350 | 0.806935 | 6.46E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene49350 | 0.880146 | 6.98E-70 | -1.69E-46 |
| MS.gene055277 | MS.gene49350 | 0.843015 | 1.82E-58 | -1.69E-46 |
| MS.gene055390 | MS.gene49350 | 0.812281 | 4.59E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene49350 | 0.80333 | 3.67E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene49350 | 0.808654 | 2.79E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene49350 | 0.827016 | 1.97E-54 | -1.69E-46 |
| MS.gene055666 | MS.gene49350 | 0.818059 | 2.39E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene49350 | 0.803596 | 3.23E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene49350 | 0.803146 | 4.01E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene49350 | 0.886609 | 2.95E-72 | -1.69E-46 |
| MS.gene056407 | MS.gene49350 | 0.845722 | 3.40E-59 | -1.69E-46 |
| MS.gene056410 | MS.gene49350 | 0.828891 | 6.99E-55 | -1.69E-46 |
| MS.gene056422 | MS.gene49350 | 0.802636 | 5.11E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene49350 | 0.817136 | 3.86E-52 | -1.69E-46 |
| MS.gene056902 | MS.gene49350 | 0.822027 | 2.95E-53 | -1.69E-46 |
| MS.gene056931 | MS.gene49350 | 0.817508 | 3.18E-52 | -1.69E-46 |
| MS.gene056933 | MS.gene49350 | 0.817466 | 3.25E-52 | -1.69E-46 |
| MS.gene056935 | MS.gene49350 | 0.803321 | 3.69E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene49350 | 0.837422 | 5.25E-57 | -1.69E-46 |
| MS.gene057330 | MS.gene49350 | 0.829005 | 6.56E-55 | -1.69E-46 |
| MS.gene057448 | MS.gene49350 | 0.85584 | 4.81E-62 | -1.69E-46 |
| MS.gene057449 | MS.gene49350 | 0.839068 | 1.98E-57 | -1.69E-46 |
| MS.gene057450 | MS.gene49350 | 0.856236 | 3.69E-62 | -1.69E-46 |
| MS.gene057469 | MS.gene49350 | 0.821302 | 4.34E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene49350 | 0.842399 | 2.65E-58 | -1.69E-46 |
| MS.gene057779 | MS.gene49350 | 0.802263 | 6.10E-49 | -1.69E-46 |
| MS.gene057782 | MS.gene49350 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene057796 | MS.gene49350 | 0.819712 | 1.01E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene49350 | 0.839903 | 1.20E-57 | -1.69E-46 |
| MS.gene058002 | MS.gene49350 | 0.847721 | 9.67E-60 | -1.69E-46 |
| MS.gene058007 | MS.gene49350 | 0.804637 | 1.96E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene49350 | 0.852331 | 4.95E-61 | -1.69E-46 |
| MS.gene058293 | MS.gene49350 | 0.817709 | 2.87E-52 | -1.69E-46 |
| MS.gene05842 | MS.gene49350 | 0.815525 | 8.84E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene49350 | 0.823197 | 1.58E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene49350 | 0.814158 | 1.78E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene49350 | 0.818589 | 1.81E-52 | -1.69E-46 |
| MS.gene058995 | MS.gene49350 | 0.834851 | 2.36E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene49350 | 0.854773 | 9.84E-62 | -1.69E-46 |
| MS.gene059082 | MS.gene49350 | 0.824503 | 7.79E-54 | -1.69E-46 |
| MS.gene059294 | MS.gene49350 | 0.829019 | 6.51E-55 | -1.69E-46 |
| MS.gene059366 | MS.gene49350 | 0.822579 | 2.20E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene49350 | 0.854976 | 8.59E-62 | -1.69E-46 |
| MS.gene059462 | MS.gene49350 | 0.827025 | 1.97E-54 | -1.69E-46 |
| MS.gene059518 | MS.gene49350 | 0.802612 | 5.16E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene49350 | 0.813389 | 2.62E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene49350 | 0.822545 | 2.24E-53 | -1.69E-46 |
| MS.gene059674 | MS.gene49350 | 0.808823 | 2.56E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene49350 | 0.818755 | 1.66E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene49350 | 0.87643 | 1.41E-68 | -1.69E-46 |
| MS.gene059692 | MS.gene49350 | 0.878732 | 2.21E-69 | -1.69E-46 |
| MS.gene059695 | MS.gene49350 | 0.884247 | 2.26E-71 | -1.69E-46 |
| MS.gene059711 | MS.gene49350 | 0.83954 | 1.49E-57 | -1.69E-46 |
| MS.gene059807 | MS.gene49350 | 0.84621 | 2.51E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene49350 | 0.820141 | 8.02E-53 | -1.69E-46 |
| MS.gene059876 | MS.gene49350 | 0.807351 | 5.27E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene49350 | 0.805067 | 1.60E-49 | -1.69E-46 |
| MS.gene059974 | MS.gene49350 | 0.850575 | 1.55E-60 | -1.69E-46 |
| MS.gene060005 | MS.gene49350 | 0.815049 | 1.13E-51 | -1.69E-46 |
| MS.gene060247 | MS.gene49350 | 0.808226 | 3.44E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene49350 | 0.868333 | 7.06E-66 | -1.69E-46 |
| MS.gene060403 | MS.gene49350 | 0.828004 | 1.14E-54 | -1.69E-46 |
| MS.gene060559 | MS.gene49350 | 0.813893 | 2.03E-51 | -1.69E-46 |
| MS.gene060569 | MS.gene49350 | 0.819301 | 1.25E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene49350 | 0.801115 | 1.05E-48 | -1.69E-46 |
| MS.gene060837 | MS.gene49350 | 0.844204 | 8.74E-59 | -1.69E-46 |
| MS.gene060986 | MS.gene49350 | 0.831433 | 1.67E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene49350 | 0.858612 | 7.31E-63 | -1.69E-46 |
| MS.gene061051 | MS.gene49350 | -0.829481 | 5.03E-55 | -1.69E-46 |
| MS.gene061154 | MS.gene49350 | 0.81553 | 8.82E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49350.t1 | MTR_1g070520 | 85.950 | 242 | 5 | 2 | 3 | 215 | 4 | 245 | 8.99e-148 | 411 |
| MS.gene49350.t1 | MTR_7g096090 | 62.109 | 256 | 50 | 5 | 1 | 215 | 1 | 250 | 7.27e-99 | 287 |
| MS.gene49350.t1 | MTR_1g093240 | 67.130 | 216 | 58 | 6 | 2 | 215 | 32 | 236 | 1.15e-90 | 266 |
| MS.gene49350.t1 | MTR_1g080860 | 76.048 | 167 | 35 | 3 | 53 | 215 | 88 | 253 | 1.32e-84 | 251 |
| MS.gene49350.t1 | MTR_1g093240 | 67.358 | 193 | 50 | 6 | 14 | 204 | 44 | 225 | 1.42e-80 | 241 |
| MS.gene49350.t1 | MTR_1g080860 | 74.359 | 156 | 35 | 3 | 53 | 204 | 88 | 242 | 1.57e-75 | 228 |
| MS.gene49350.t1 | MTR_5g030710 | 64.497 | 169 | 55 | 4 | 49 | 215 | 170 | 335 | 1.03e-68 | 214 |
| MS.gene49350.t1 | MTR_5g067350 | 65.217 | 161 | 52 | 3 | 55 | 215 | 191 | 347 | 1.54e-68 | 213 |
| MS.gene49350.t1 | MTR_6g488150 | 64.375 | 160 | 53 | 2 | 57 | 215 | 98 | 254 | 3.67e-67 | 207 |
| MS.gene49350.t1 | MTR_8g067530 | 64.671 | 167 | 53 | 4 | 51 | 215 | 194 | 356 | 4.42e-67 | 210 |
| MS.gene49350.t1 | MTR_1g093240 | 63.043 | 184 | 55 | 6 | 2 | 183 | 32 | 204 | 5.98e-67 | 204 |
| MS.gene49350.t1 | MTR_2g101500 | 64.417 | 163 | 53 | 4 | 55 | 215 | 167 | 326 | 4.36e-66 | 206 |
| MS.gene49350.t1 | MTR_8g103030 | 61.677 | 167 | 55 | 4 | 53 | 215 | 132 | 293 | 2.16e-64 | 201 |
| MS.gene49350.t1 | MTR_1g040675 | 44.186 | 215 | 66 | 6 | 12 | 204 | 1 | 183 | 1.53e-49 | 160 |
| MS.gene49350.t1 | MTR_1g070830 | 43.043 | 230 | 77 | 5 | 1 | 204 | 1 | 202 | 2.28e-48 | 157 |
| MS.gene49350.t1 | MTR_1g076270 | 46.040 | 202 | 71 | 6 | 9 | 203 | 8 | 178 | 3.03e-48 | 156 |
| MS.gene49350.t1 | MTR_1g093350 | 46.040 | 202 | 71 | 6 | 9 | 203 | 8 | 178 | 3.03e-48 | 156 |
| MS.gene49350.t1 | MTR_1g069495 | 41.791 | 201 | 74 | 5 | 51 | 210 | 65 | 263 | 6.67e-38 | 132 |
| MS.gene49350.t1 | MTR_1g040675 | 41.237 | 194 | 60 | 6 | 12 | 183 | 1 | 162 | 1.67e-37 | 128 |
| MS.gene49350.t1 | MTR_4g011880 | 44.554 | 202 | 75 | 8 | 10 | 207 | 4 | 172 | 9.03e-36 | 124 |
| MS.gene49350.t1 | MTR_2g102490 | 39.594 | 197 | 96 | 8 | 2 | 195 | 4 | 180 | 1.33e-33 | 119 |
| MS.gene49350.t1 | MTR_8g014520 | 42.405 | 158 | 75 | 4 | 57 | 199 | 104 | 260 | 4.99e-30 | 112 |
| MS.gene49350.t1 | MTR_8g014520 | 42.405 | 158 | 75 | 4 | 57 | 199 | 104 | 260 | 5.04e-30 | 112 |
| MS.gene49350.t1 | MTR_2g100780 | 38.043 | 184 | 93 | 5 | 44 | 206 | 80 | 263 | 3.27e-29 | 110 |
| MS.gene49350.t1 | MTR_2g100780 | 38.286 | 175 | 89 | 4 | 44 | 199 | 80 | 254 | 5.21e-29 | 109 |
| MS.gene49350.t1 | MTR_5g067350 | 60.241 | 83 | 31 | 1 | 55 | 137 | 191 | 271 | 2.02e-25 | 100 |
| MS.gene49350.t1 | MTR_6g488150 | 59.494 | 79 | 29 | 1 | 57 | 135 | 98 | 173 | 2.60e-24 | 95.5 |
| MS.gene49350.t1 | MTR_4g124300 | 36.129 | 155 | 65 | 6 | 52 | 200 | 58 | 184 | 8.91e-20 | 83.2 |
| MS.gene49350.t1 | MTR_3g106850 | 30.986 | 142 | 78 | 3 | 60 | 200 | 88 | 210 | 2.03e-19 | 83.2 |
| MS.gene49350.t1 | MTR_1g085750 | 38.835 | 103 | 50 | 1 | 94 | 196 | 81 | 170 | 2.71e-17 | 76.6 |
| MS.gene49350.t1 | MTR_4g115075 | 30.435 | 138 | 73 | 3 | 61 | 198 | 93 | 207 | 2.63e-16 | 74.7 |
| MS.gene49350.t1 | MTR_7g110790 | 37.374 | 99 | 49 | 1 | 98 | 196 | 70 | 155 | 7.74e-16 | 72.4 |
| MS.gene49350.t1 | MTR_1g085750 | 36.667 | 90 | 44 | 1 | 94 | 183 | 81 | 157 | 1.92e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49350.t1 | AT3G23050 | 67.136 | 213 | 52 | 8 | 14 | 215 | 38 | 243 | 1.36e-87 | 258 |
| MS.gene49350.t1 | AT4G14550 | 66.829 | 205 | 56 | 6 | 14 | 215 | 33 | 228 | 4.64e-87 | 256 |
| MS.gene49350.t1 | AT3G04730 | 70.286 | 175 | 39 | 3 | 53 | 215 | 63 | 236 | 1.41e-85 | 253 |
| MS.gene49350.t1 | AT1G04250 | 59.545 | 220 | 68 | 7 | 3 | 215 | 24 | 229 | 4.21e-79 | 236 |
| MS.gene49350.t1 | AT4G14550 | 64.583 | 192 | 57 | 5 | 15 | 204 | 35 | 217 | 8.46e-79 | 236 |
| MS.gene49350.t1 | AT4G29080 | 60.106 | 188 | 62 | 4 | 35 | 214 | 122 | 304 | 6.09e-68 | 211 |
| MS.gene49350.t1 | AT5G65670 | 61.326 | 181 | 64 | 4 | 37 | 215 | 160 | 336 | 5.47e-67 | 209 |
| MS.gene49350.t1 | AT3G23050 | 63.889 | 180 | 48 | 7 | 14 | 183 | 38 | 210 | 1.75e-65 | 201 |
| MS.gene49350.t1 | AT5G65670 | 60.656 | 183 | 64 | 5 | 37 | 215 | 160 | 338 | 5.40e-65 | 204 |
| MS.gene49350.t1 | AT4G14550 | 63.372 | 172 | 51 | 6 | 14 | 182 | 33 | 195 | 6.49e-65 | 199 |
| MS.gene49350.t1 | AT2G22670 | 59.259 | 162 | 61 | 4 | 55 | 214 | 160 | 318 | 1.25e-60 | 192 |
| MS.gene49350.t1 | AT2G22670 | 59.259 | 162 | 61 | 4 | 55 | 214 | 160 | 318 | 1.25e-60 | 192 |
| MS.gene49350.t1 | AT2G22670 | 59.259 | 162 | 61 | 4 | 55 | 214 | 177 | 335 | 1.83e-60 | 192 |
| MS.gene49350.t1 | AT2G22670 | 58.025 | 162 | 61 | 5 | 55 | 214 | 160 | 316 | 2.08e-57 | 184 |
| MS.gene49350.t1 | AT2G22670 | 58.025 | 162 | 61 | 5 | 55 | 214 | 160 | 316 | 2.08e-57 | 184 |
| MS.gene49350.t1 | AT5G43700 | 49.500 | 200 | 72 | 6 | 9 | 204 | 8 | 182 | 3.84e-53 | 169 |
| MS.gene49350.t1 | AT1G04240 | 47.596 | 208 | 74 | 6 | 9 | 204 | 2 | 186 | 7.38e-50 | 160 |
| MS.gene49350.t1 | AT3G23030 | 48.936 | 188 | 58 | 4 | 21 | 203 | 16 | 170 | 2.12e-49 | 159 |
| MS.gene49350.t1 | AT1G04240 | 47.596 | 208 | 74 | 6 | 9 | 204 | 102 | 286 | 1.51e-48 | 160 |
| MS.gene49350.t1 | AT3G23030 | 48.936 | 188 | 58 | 4 | 21 | 203 | 103 | 257 | 1.82e-48 | 159 |
| MS.gene49350.t1 | AT4G14560 | 49.474 | 190 | 59 | 6 | 14 | 200 | 9 | 164 | 6.60e-42 | 140 |
| MS.gene49350.t1 | AT2G33310 | 44.211 | 190 | 84 | 5 | 37 | 209 | 52 | 236 | 2.17e-40 | 138 |
| MS.gene49350.t1 | AT2G33310 | 44.211 | 190 | 84 | 5 | 37 | 209 | 52 | 236 | 2.17e-40 | 138 |
| MS.gene49350.t1 | AT1G15580 | 44.565 | 184 | 65 | 5 | 14 | 196 | 10 | 157 | 4.84e-40 | 135 |
| MS.gene49350.t1 | AT1G04550 | 43.814 | 194 | 80 | 5 | 37 | 210 | 46 | 230 | 8.89e-40 | 136 |
| MS.gene49350.t1 | AT2G33310 | 43.979 | 191 | 84 | 6 | 37 | 209 | 52 | 237 | 6.11e-39 | 134 |
| MS.gene49350.t1 | AT3G15540 | 39.556 | 225 | 85 | 7 | 8 | 210 | 2 | 197 | 1.03e-37 | 130 |
| MS.gene49350.t1 | AT4G14550 | 57.600 | 125 | 43 | 4 | 15 | 137 | 35 | 151 | 1.11e-36 | 127 |
| MS.gene49350.t1 | AT3G23050 | 57.778 | 135 | 41 | 6 | 14 | 138 | 38 | 166 | 2.92e-36 | 125 |
| MS.gene49350.t1 | AT1G52830 | 37.383 | 214 | 85 | 7 | 9 | 204 | 3 | 185 | 6.33e-35 | 122 |
| MS.gene49350.t1 | AT3G16500 | 41.143 | 175 | 87 | 4 | 38 | 199 | 81 | 252 | 1.98e-33 | 121 |
| MS.gene49350.t1 | AT3G16500 | 41.143 | 175 | 87 | 4 | 38 | 199 | 81 | 252 | 2.12e-33 | 121 |
| MS.gene49350.t1 | AT4G28640 | 44.375 | 160 | 71 | 5 | 59 | 204 | 87 | 242 | 8.45e-33 | 119 |
| MS.gene49350.t1 | AT4G28640 | 44.304 | 158 | 70 | 5 | 59 | 202 | 87 | 240 | 1.52e-32 | 118 |
| MS.gene49350.t1 | AT4G28640 | 44.304 | 158 | 70 | 5 | 59 | 202 | 87 | 240 | 1.69e-31 | 117 |
| MS.gene49350.t1 | AT1G51950 | 35.683 | 227 | 104 | 9 | 9 | 199 | 30 | 250 | 4.05e-30 | 112 |
| MS.gene49350.t1 | AT1G04100 | 41.176 | 170 | 69 | 7 | 62 | 204 | 95 | 260 | 6.75e-28 | 106 |
| MS.gene49350.t1 | AT5G25890 | 37.838 | 148 | 68 | 2 | 59 | 206 | 47 | 170 | 3.88e-26 | 99.8 |
| MS.gene49350.t1 | AT3G17600 | 31.875 | 160 | 78 | 4 | 41 | 196 | 22 | 154 | 4.50e-21 | 86.3 |
| MS.gene49350.t1 | AT3G62100 | 38.532 | 109 | 51 | 2 | 90 | 196 | 74 | 168 | 1.42e-17 | 77.4 |
| MS.gene49350.t1 | AT2G46990 | 40.404 | 99 | 45 | 1 | 98 | 196 | 86 | 170 | 2.58e-17 | 76.6 |
| MS.gene49350.t1 | AT4G32280 | 31.579 | 114 | 53 | 3 | 98 | 211 | 119 | 207 | 2.41e-15 | 72.0 |
| MS.gene49350.t1 | AT4G32280 | 25.824 | 182 | 81 | 6 | 59 | 211 | 93 | 249 | 2.98e-15 | 72.8 |
| MS.gene49350.t1 | AT2G46990 | 40.698 | 86 | 37 | 1 | 98 | 183 | 86 | 157 | 1.99e-12 | 63.2 |
| MS.gene49350.t1 | AT3G62100 | 37.500 | 96 | 44 | 2 | 90 | 183 | 74 | 155 | 3.40e-12 | 62.4 |
| MS.gene49350.t1 | AT1G04550 | 35.246 | 122 | 60 | 4 | 37 | 139 | 46 | 167 | 3.88e-12 | 62.8 |
| MS.gene49350.t1 | AT1G15050 | 29.630 | 135 | 76 | 3 | 67 | 201 | 35 | 150 | 1.95e-11 | 60.5 |
| MS.gene49350.t1 | AT1G15050 | 29.630 | 135 | 76 | 3 | 67 | 201 | 67 | 182 | 3.20e-11 | 60.5 |
Find 57 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATCCTTCACTGCTCTTT+TGG | 0.116525 | 1.1:+53151183 | None:intergenic |
| CTAACTTTCACAAAGCTTAT+TGG | 0.117785 | 1.1:+53151131 | None:intergenic |
| GGTAAAGGAGTTAAACATTT+TGG | 0.221116 | 1.1:+53151031 | None:intergenic |
| GCTCTTCTGCTCTCTGATTC+TGG | 0.233246 | 1.1:-53152144 | MS.gene49350:CDS |
| TTGTGAATCCCAAGGCATTA+AGG | 0.313394 | 1.1:-53150343 | MS.gene49350:CDS |
| ACATCTTGAGGTCTACTTTA+CGG | 0.340864 | 1.1:+53151087 | None:intergenic |
| GGAAGTTGCAGGGCTGAAAA+AGG | 0.353058 | 1.1:-53152358 | MS.gene49350:CDS |
| AGCAGAAGAGCCTTCTCCTT+TGG | 0.360991 | 1.1:+53152156 | None:intergenic |
| CCATCTTTGTCTTCATAAGT+TGG | 0.383939 | 1.1:+53150264 | None:intergenic |
| CATGAAATCCTTAATGCCTT+GGG | 0.384985 | 1.1:+53150335 | None:intergenic |
| TCATGAAATCCTTAATGCCT+TGG | 0.406074 | 1.1:+53150334 | None:intergenic |
| CATCTTTGTCTTCATAAGTT+GGG | 0.414636 | 1.1:+53150265 | None:intergenic |
| AGGCTAGGACTTGGATTGCC+AGG | 0.417824 | 1.1:-53152303 | MS.gene49350:CDS |
| TTCTCCTTTGGCTTAAATTG+TGG | 0.418936 | 1.1:+53152168 | None:intergenic |
| AACTTGATAATGGAAGTTGC+AGG | 0.451323 | 1.1:-53152369 | None:intergenic |
| GAATGAGAGTAATAAGTTGA+TGG | 0.457906 | 1.1:-53150313 | MS.gene49350:CDS |
| GGAAAGGAAGCCATTGGACT+AGG | 0.462382 | 1.1:-53149911 | MS.gene49350:intron |
| GCTAAGGCATCAGAGAGCTC+TGG | 0.465095 | 1.1:+53151053 | None:intergenic |
| GGAGGAAAAGATGGTGTTTG+AGG | 0.477721 | 1.1:-53152337 | MS.gene49350:CDS |
| TAATGAATAACTTACTTAGC+AGG | 0.482440 | 1.1:+53152111 | None:intergenic |
| GGGCAGCAAACATGTTCTTA+CGG | 0.483487 | 1.1:+53151204 | None:intergenic |
| CTAAGGCATCAGAGAGCTCT+GGG | 0.519415 | 1.1:+53151054 | None:intergenic |
| AGGTCTACTTTACGGAGGTA+AGG | 0.526416 | 1.1:+53151095 | None:intergenic |
| ATGAAAGGAAAGGAAGCCAT+TGG | 0.526527 | 1.1:-53149917 | MS.gene49350:CDS |
| ACAATTTAAGCCAAAGGAGA+AGG | 0.543283 | 1.1:-53152166 | MS.gene49350:CDS |
| ACTGAACTGAGGCTAGGACT+TGG | 0.544230 | 1.1:-53152312 | MS.gene49350:CDS |
| ATGTTTAACTCCTTTACCAC+AGG | 0.544923 | 1.1:-53151026 | MS.gene49350:intron |
| AAGCTTTGTGAAAGTTAGCA+TGG | 0.545131 | 1.1:-53151126 | MS.gene49350:CDS |
| GGTAACTCTTGTACATCTTG+AGG | 0.548937 | 1.1:+53151075 | None:intergenic |
| TTTGTGAAAGTTAGCATGGA+TGG | 0.550924 | 1.1:-53151122 | MS.gene49350:CDS |
| ACGTATAGGGCACAAGTGGT+AGG | 0.553577 | 1.1:-53151248 | MS.gene49350:intron |
| CCAACTTATGAAGACAAAGA+TGG | 0.567272 | 1.1:-53150264 | MS.gene49350:CDS |
| CGTATAGGGCACAAGTGGTA+GGG | 0.568467 | 1.1:-53151247 | MS.gene49350:intron |
| TGCTTGTCGGTGATGTACCA+TGG | 0.581796 | 1.1:-53150233 | MS.gene49350:CDS |
| TATGTCAGCACCTAGAGCCA+TGG | 0.584052 | 1.1:-53149326 | MS.gene49350:intron |
| GCTGCCCAAAAGAGCAGTGA+AGG | 0.587247 | 1.1:-53151188 | MS.gene49350:CDS |
| ATGAAGACAAAGATGGCGAC+TGG | 0.589440 | 1.1:-53150257 | MS.gene49350:CDS |
| TTCATAAGTTGGGACATAGT+CGG | 0.596025 | 1.1:+53150275 | None:intergenic |
| TTTACGTATCATGAAAGGAA+AGG | 0.596184 | 1.1:-53149927 | MS.gene49350:CDS |
| AGATCCACAATTTAAGCCAA+AGG | 0.598269 | 1.1:-53152172 | MS.gene49350:CDS |
| GGCTAGGACTTGGATTGCCA+GGG | 0.598855 | 1.1:-53152302 | MS.gene49350:CDS |
| AAGCGTTTACGTATCATGAA+AGG | 0.600017 | 1.1:-53149932 | MS.gene49350:CDS |
| GAATTGAAAACTTACTCCCA+TGG | 0.601391 | 1.1:+53150216 | None:intergenic |
| GATGGCGACTGGATGCTTGT+CGG | 0.601801 | 1.1:-53150246 | MS.gene49350:CDS |
| TTACGGAATGACCGCACTGG+TGG | 0.603134 | 1.1:+53151221 | None:intergenic |
| GCTTGTCGGTGATGTACCAT+GGG | 0.605812 | 1.1:-53150232 | MS.gene49350:CDS |
| GAGGAAACTGAACTGAGGCT+AGG | 0.606535 | 1.1:-53152318 | MS.gene49350:CDS |
| TTCTTACGGAATGACCGCAC+TGG | 0.606920 | 1.1:+53151218 | None:intergenic |
| CTGTACGTATAGGGCACAAG+TGG | 0.611935 | 1.1:-53151252 | MS.gene49350:intron |
| TGAATAACTTACTTAGCAGG+AGG | 0.615531 | 1.1:+53152114 | None:intergenic |
| ATCATACTAACCTAGTCCAA+TGG | 0.619665 | 1.1:+53149901 | None:intergenic |
| GAAGGAAATTGTGAATCCCA+AGG | 0.620096 | 1.1:-53150351 | MS.gene49350:intron |
| ACTTGATAATGGAAGTTGCA+GGG | 0.628469 | 1.1:-53152368 | None:intergenic |
| TGGTAGGGTGGCCACCAGTG+CGG | 0.683033 | 1.1:-53151232 | MS.gene49350:CDS |
| ATAGGGCACAAGTGGTAGGG+TGG | 0.690264 | 1.1:-53151244 | MS.gene49350:intron |
| TCTTGAGGTCTACTTTACGG+AGG | 0.703203 | 1.1:+53151090 | None:intergenic |
| TGTTTGAGGAAACTGAACTG+AGG | 0.788719 | 1.1:-53152323 | MS.gene49350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAAAATATTTATTTTT+TGG | - | chr1.1:53151574-53151593 | MS.gene49350:intron | 0.0% |
| !! | AAATTAAATTTATTCTTTCA+TGG | + | chr1.1:53151183-53151202 | None:intergenic | 10.0% |
| !! | AGTAATGAAATAAATAAAAA+AGG | + | chr1.1:53151502-53151521 | None:intergenic | 10.0% |
| !! | ATATAAATTATTAATCACAA+AGG | + | chr1.1:53149748-53149767 | None:intergenic | 10.0% |
| !! | GTAATGAAATAAATAAAAAA+GGG | + | chr1.1:53151501-53151520 | None:intergenic | 10.0% |
| !!! | AAAGATATTTTTATAAGTAA+AGG | + | chr1.1:53152251-53152270 | None:intergenic | 10.0% |
| !!! | AAATTTAATTTCATAGAAAT+GGG | - | chr1.1:53151192-53151211 | MS.gene49350:CDS | 10.0% |
| !!! | AAGATATTTTTATAAGTAAA+GGG | + | chr1.1:53152250-53152269 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTTGA+AGG | + | chr1.1:53151944-53151963 | None:intergenic | 10.0% |
| !!! | GAACTATTTTAAAATTTATA+TGG | + | chr1.1:53150125-53150144 | None:intergenic | 10.0% |
| !!! | TAAATTTAATTTCATAGAAA+TGG | - | chr1.1:53151191-53151210 | MS.gene49350:CDS | 10.0% |
| !!! | TTAAAATAGTTCTATATTAA+AGG | - | chr1.1:53150133-53150152 | MS.gene49350:intron | 10.0% |
| !!! | TTTTAATTGTGAATTAAATA+TGG | - | chr1.1:53150074-53150093 | MS.gene49350:intron | 10.0% |
| !! | AAACTATCAACTTTATAATA+AGG | - | chr1.1:53150171-53150190 | MS.gene49350:intron | 15.0% |
| !! | AATTTCATTGCTAAAATAAA+TGG | - | chr1.1:53150265-53150284 | MS.gene49350:CDS | 15.0% |
| !! | ATTATTAATATGTTAGATGA+GGG | - | chr1.1:53150689-53150708 | MS.gene49350:intron | 15.0% |
| !! | GATAACAATAGTATATAATA+AGG | + | chr1.1:53150027-53150046 | None:intergenic | 15.0% |
| !! | TATTATTAATATGTTAGATG+AGG | - | chr1.1:53150688-53150707 | MS.gene49350:intron | 15.0% |
| !! | TTTATATTGAAATTGATTGA+AGG | - | chr1.1:53151294-53151313 | MS.gene49350:intron | 15.0% |
| !!! | AAAATTTGCTATATTGTTAT+GGG | + | chr1.1:53149865-53149884 | None:intergenic | 15.0% |
| !!! | AGCAAAATAGTTTTATAAAA+AGG | + | chr1.1:53150838-53150857 | None:intergenic | 15.0% |
| !!! | GCAAAATAGTTTTATAAAAA+GGG | + | chr1.1:53150837-53150856 | None:intergenic | 15.0% |
| !!! | TTATGTTCCAATTAATTTTA+TGG | + | chr1.1:53149682-53149701 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTGTTGAAGAA+AGG | - | chr1.1:53150001-53150020 | MS.gene49350:intron | 15.0% |
| !! | AATTATTAATCACAAAGGAA+TGG | + | chr1.1:53149743-53149762 | None:intergenic | 20.0% |
| !! | ACCAAATAAATGAGTTATAT+AGG | + | chr1.1:53152096-53152115 | None:intergenic | 20.0% |
| !! | ACCTATATAACTCATTTATT+TGG | - | chr1.1:53152092-53152111 | MS.gene49350:intron | 20.0% |
| !! | AGATCAATATCAAGTATTAA+TGG | - | chr1.1:53151257-53151276 | MS.gene49350:intron | 20.0% |
| !! | ATAGTTAAAAAAATTACCTG+TGG | + | chr1.1:53150656-53150675 | None:intergenic | 20.0% |
| !! | ATTCAAATGTTTAAAAGTTG+TGG | + | chr1.1:53152200-53152219 | None:intergenic | 20.0% |
| !! | CTTAAAGTAAAAGAAAGTTA+GGG | + | chr1.1:53152001-53152020 | None:intergenic | 20.0% |
| !! | GCAATATTAAGACAAAATTA+AGG | + | chr1.1:53151140-53151159 | None:intergenic | 20.0% |
| !! | GTACAATAAAAACATATAGT+AGG | + | chr1.1:53150205-53150224 | None:intergenic | 20.0% |
| !! | TACTTATAGAAAAAAGTAAG+AGG | + | chr1.1:53149932-53149951 | None:intergenic | 20.0% |
| !! | TATCAAAAAAAAATTACGCA+GGG | - | chr1.1:53150760-53150779 | MS.gene49350:intron | 20.0% |
| !! | TCTTAAAGTAAAAGAAAGTT+AGG | + | chr1.1:53152002-53152021 | None:intergenic | 20.0% |
| !! | TTAATAGTATGCTCATAAAT+TGG | - | chr1.1:53151844-53151863 | MS.gene49350:intron | 20.0% |
| !! | TTATCAAAAAAAAATTACGC+AGG | - | chr1.1:53150759-53150778 | MS.gene49350:intron | 20.0% |
| !!! | AAAAGTCTTATAAATAAGGA+TGG | - | chr1.1:53151056-53151075 | MS.gene49350:CDS | 20.0% |
| !!! | AAACAAACTATCTCTTTTAA+AGG | - | chr1.1:53150952-53150971 | MS.gene49350:intron | 20.0% |
| !!! | AAATTTGCTATATTGTTATG+GGG | + | chr1.1:53149864-53149883 | None:intergenic | 20.0% |
| !!! | AATTTTGTCTTAATATTGCA+TGG | - | chr1.1:53151141-53151160 | MS.gene49350:CDS | 20.0% |
| !!! | CAAAATTTGCTATATTGTTA+TGG | + | chr1.1:53149866-53149885 | None:intergenic | 20.0% |
| !!! | CCAAAAAAGTCTTATAAATA+AGG | - | chr1.1:53151052-53151071 | MS.gene49350:CDS | 20.0% |
| !!! | CCTTATTTATAAGACTTTTT+TGG | + | chr1.1:53151055-53151074 | None:intergenic | 20.0% |
| !!! | TATAATAAATAAGGGTATGT+AGG | + | chr1.1:53150889-53150908 | None:intergenic | 20.0% |
| !!! | TTACTTTAAGATACAATAGA+TGG | - | chr1.1:53152011-53152030 | MS.gene49350:intron | 20.0% |
| !!! | TTCCAATTAATTTTATGGAT+CGG | + | chr1.1:53149677-53149696 | None:intergenic | 20.0% |
| !!! | TTTGGTTCAAACAATTTAAT+TGG | - | chr1.1:53152110-53152129 | MS.gene49350:intron | 20.0% |
| !!! | TTTTTGTTAGCTATATATTG+TGG | + | chr1.1:53151666-53151685 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGAAGGATGTTTA+GGG | + | chr1.1:53151934-53151953 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGAAGGATGTTT+AGG | + | chr1.1:53151935-53151954 | None:intergenic | 20.0% |
| ! | AAAAAAATTACCTGTGGTAA+AGG | + | chr1.1:53150650-53150669 | None:intergenic | 25.0% |
| ! | ATCAAAAAAAAATTACGCAG+GGG | - | chr1.1:53150761-53150780 | MS.gene49350:intron | 25.0% |
| ! | TAATGAATAACTTACTTAGC+AGG | + | chr1.1:53149555-53149574 | None:intergenic | 25.0% |
| ! | TGACATTCTAAGCAAAATAA+CGG | - | chr1.1:53152298-53152317 | MS.gene49350:CDS | 25.0% |
| ! | TTACGCATGCTTAAATATTT+AGG | + | chr1.1:53149579-53149598 | None:intergenic | 25.0% |
| ! | TTCCGATCCATAAAATTAAT+TGG | - | chr1.1:53149672-53149691 | MS.gene49350:intron | 25.0% |
| !! | GAAAATTCTCAAGTTTTTGA+AGG | + | chr1.1:53150331-53150350 | None:intergenic | 25.0% |
| !! | TAGTTCTATATTAAAGGACA+AGG | - | chr1.1:53150139-53150158 | MS.gene49350:intron | 25.0% |
| !!! | AGACTTTTTTGGTAAAATCA+CGG | + | chr1.1:53151044-53151063 | None:intergenic | 25.0% |
| AAAGCAATACAATCATGAAC+TGG | - | chr1.1:53150304-53150323 | MS.gene49350:CDS | 30.0% | |
| AAATTGGCATTAAGTACAAG+AGG | - | chr1.1:53151860-53151879 | MS.gene49350:intron | 30.0% | |
| ACTAATTGAACTGTACGTAT+AGG | - | chr1.1:53150401-53150420 | MS.gene49350:intron | 30.0% | |
| AGTTCATGATTGTATTGCTT+TGG | + | chr1.1:53150305-53150324 | None:intergenic | 30.0% | |
| ATAGAAAAAAGTAAGAGGCA+AGG | + | chr1.1:53149927-53149946 | None:intergenic | 30.0% | |
| CATCTTTGTCTTCATAAGTT+GGG | + | chr1.1:53151401-53151420 | None:intergenic | 30.0% | |
| CATTCTTCCACTGAATTAAT+TGG | - | chr1.1:53151469-53151488 | MS.gene49350:intron | 30.0% | |
| CTAACTTTCACAAAGCTTAT+TGG | + | chr1.1:53150535-53150554 | None:intergenic | 30.0% | |
| CTAATTGAACTGTACGTATA+GGG | - | chr1.1:53150402-53150421 | MS.gene49350:intron | 30.0% | |
| CTTAATCTTTCTACTAAGGA+AGG | - | chr1.1:53149462-53149481 | MS.gene49350:intron | 30.0% | |
| GAAGCTTAATCTTTCTACTA+AGG | - | chr1.1:53149458-53149477 | MS.gene49350:intron | 30.0% | |
| GGAAAACAACAGAAGTAATA+AGG | - | chr1.1:53149382-53149401 | MS.gene49350:intron | 30.0% | |
| GGTTCAAACAATTTAATTGG+CGG | - | chr1.1:53152113-53152132 | MS.gene49350:intron | 30.0% | |
| TTGAAATTAGTACACGTACT+AGG | + | chr1.1:53151548-53151567 | None:intergenic | 30.0% | |
| TTGCTAAGAACAGAGAATAA+GGG | - | chr1.1:53152146-53152165 | MS.gene49350:CDS | 30.0% | |
| TTTACGTATCATGAAAGGAA+AGG | - | chr1.1:53151736-53151755 | MS.gene49350:intron | 30.0% | |
| ! | AGTCTTATAATTAGAGACAG+AGG | + | chr1.1:53150797-53150816 | None:intergenic | 30.0% |
| ! | GAATGAGAGTAATAAGTTGA+TGG | - | chr1.1:53151350-53151369 | MS.gene49350:intron | 30.0% |
| ! | GGTAAAGGAGTTAAACATTT+TGG | + | chr1.1:53150635-53150654 | None:intergenic | 30.0% |
| !! | TTTATTTTCTTTGTGTCGAC+AGG | - | chr1.1:53151690-53151709 | MS.gene49350:intron | 30.0% |
| !!! | GACTTTTTTGGTAAAATCAC+GGG | + | chr1.1:53151043-53151062 | None:intergenic | 30.0% |
| !!! | TCTTTGTTTTGGTGATTAAG+TGG | + | chr1.1:53151908-53151927 | None:intergenic | 30.0% |
| AAGCGTTTACGTATCATGAA+AGG | - | chr1.1:53151731-53151750 | MS.gene49350:intron | 35.0% | |
| ACAATTTAAGCCAAAGGAGA+AGG | - | chr1.1:53149497-53149516 | MS.gene49350:intron | 35.0% | |
| ACAGAAGTAATAAGGAAGAG+AGG | - | chr1.1:53149390-53149409 | MS.gene49350:intron | 35.0% | |
| ACATCTTGAGGTCTACTTTA+CGG | + | chr1.1:53150579-53150598 | None:intergenic | 35.0% | |
| AGATCCACAATTTAAGCCAA+AGG | - | chr1.1:53149491-53149510 | MS.gene49350:intron | 35.0% | |
| AGTGAAAGAGCGAAATGATA+AGG | + | chr1.1:53150731-53150750 | None:intergenic | 35.0% | |
| ATCATACTAACCTAGTCCAA+TGG | + | chr1.1:53151765-53151784 | None:intergenic | 35.0% | |
| ATGTTTAACTCCTTTACCAC+AGG | - | chr1.1:53150637-53150656 | MS.gene49350:intron | 35.0% | |
| CATGAAATCCTTAATGCCTT+GGG | + | chr1.1:53151331-53151350 | None:intergenic | 35.0% | |
| CCAACTTATGAAGACAAAGA+TGG | - | chr1.1:53151399-53151418 | MS.gene49350:intron | 35.0% | |
| CCATCTTTGTCTTCATAAGT+TGG | + | chr1.1:53151402-53151421 | None:intergenic | 35.0% | |
| CTTGCTAAGAACAGAGAATA+AGG | - | chr1.1:53152145-53152164 | MS.gene49350:CDS | 35.0% | |
| GAATTGAAAACTTACTCCCA+TGG | + | chr1.1:53151450-53151469 | None:intergenic | 35.0% | |
| GTCACTACCAATTAATTCAG+TGG | + | chr1.1:53151479-53151498 | None:intergenic | 35.0% | |
| TCATGAAATCCTTAATGCCT+TGG | + | chr1.1:53151332-53151351 | None:intergenic | 35.0% | |
| TGAAAGTGAAACAAACACTG+TGG | - | chr1.1:53149431-53149450 | MS.gene49350:intron | 35.0% | |
| TGAATAACTTACTTAGCAGG+AGG | + | chr1.1:53149552-53149571 | None:intergenic | 35.0% | |
| TGCTAAGAACAGAGAATAAG+GGG | - | chr1.1:53152147-53152166 | MS.gene49350:CDS | 35.0% | |
| TTAGCTATATATTGTGGTCG+TGG | + | chr1.1:53151660-53151679 | None:intergenic | 35.0% | |
| TTTGTGAAAGTTAGCATGGA+TGG | - | chr1.1:53150541-53150560 | MS.gene49350:intron | 35.0% | |
| ! | AAGCTTTGTGAAAGTTAGCA+TGG | - | chr1.1:53150537-53150556 | MS.gene49350:intron | 35.0% |
| ! | GAAGTGCTTGAGTATATACA+TGG | + | chr1.1:53150381-53150400 | None:intergenic | 35.0% |
| ! | TTCATAAGTTGGGACATAGT+CGG | + | chr1.1:53151391-53151410 | None:intergenic | 35.0% |
| ! | TTCTCCTTTGGCTTAAATTG+TGG | + | chr1.1:53149498-53149517 | None:intergenic | 35.0% |
| !! | GTTTAGGGATCTCTTTGTTT+TGG | + | chr1.1:53151919-53151938 | None:intergenic | 35.0% |
| !!! | ATTACTTCTGTTGTTTTCCC+TGG | + | chr1.1:53149381-53149400 | None:intergenic | 35.0% |
| !!! | GGAGTTAAACATTTTGGCTA+AGG | + | chr1.1:53150629-53150648 | None:intergenic | 35.0% |
| ATCACAAAGGAATGGAACAC+AGG | + | chr1.1:53149735-53149754 | None:intergenic | 40.0% | |
| ATGAAAGGAAAGGAAGCCAT+TGG | - | chr1.1:53151746-53151765 | MS.gene49350:intron | 40.0% | |
| CACGTACTAGGTGTAATTGT+TGG | + | chr1.1:53151536-53151555 | None:intergenic | 40.0% | |
| CCATGGAAAAATGCAAGAAC+AGG | - | chr1.1:53152354-53152373 | MS.gene49350:CDS | 40.0% | |
| CGTGCATGTGAATATACACA+TGG | - | chr1.1:53151233-53151252 | MS.gene49350:CDS | 40.0% | |
| GAAGGAAATTGTGAATCCCA+AGG | - | chr1.1:53151312-53151331 | MS.gene49350:intron | 40.0% | |
| GCTGAAAAAGGAGGAAAAGA+TGG | - | chr1.1:53149317-53149336 | MS.gene49350:CDS | 40.0% | |
| GGTAACTCTTGTACATCTTG+AGG | + | chr1.1:53150591-53150610 | None:intergenic | 40.0% | |
| GTGGTTTCTCTGTCTCATTA+TGG | + | chr1.1:53151641-53151660 | None:intergenic | 40.0% | |
| TGTTTGAGGAAACTGAACTG+AGG | - | chr1.1:53149340-53149359 | MS.gene49350:intron | 40.0% | |
| TTAGAGACAGAGGTAGTAGT+TGG | + | chr1.1:53150787-53150806 | None:intergenic | 40.0% | |
| ! | CCTGTTCTTGCATTTTTCCA+TGG | + | chr1.1:53152357-53152376 | None:intergenic | 40.0% |
| ! | TGATCCTTCACTGCTCTTTT+GGG | + | chr1.1:53150482-53150501 | None:intergenic | 40.0% |
| ! | TTGCATTTTTCCATGGCTCT+AGG | + | chr1.1:53152350-53152369 | None:intergenic | 40.0% |
| ! | TTGTGAATCCCAAGGCATTA+AGG | - | chr1.1:53151320-53151339 | MS.gene49350:intron | 40.0% |
| AGGTCTACTTTACGGAGGTA+AGG | + | chr1.1:53150571-53150590 | None:intergenic | 45.0% | |
| ATGAAGACAAAGATGGCGAC+TGG | - | chr1.1:53151406-53151425 | MS.gene49350:intron | 45.0% | |
| GGAGGAAAAGATGGTGTTTG+AGG | - | chr1.1:53149326-53149345 | MS.gene49350:intron | 45.0% | |
| GGGCAGCAAACATGTTCTTA+CGG | + | chr1.1:53150462-53150481 | None:intergenic | 45.0% | |
| TCTTGAGGTCTACTTTACGG+AGG | + | chr1.1:53150576-53150595 | None:intergenic | 45.0% | |
| ! | CTGATCCTTCACTGCTCTTT+TGG | + | chr1.1:53150483-53150502 | None:intergenic | 45.0% |
| !! | AAAAAAAATAGTATATAATA+AGG | + | chr1.1:53149989-53150008 | None:intergenic | 5.0% |
| !! | AAAAAAATGTATAATAAATA+AGG | + | chr1.1:53150898-53150917 | None:intergenic | 5.0% |
| !! | AAAAAATGTATAATAAATAA+GGG | + | chr1.1:53150897-53150916 | None:intergenic | 5.0% |
| !! | AAAAATAAAAAAAAATAGTA+AGG | + | chr1.1:53149956-53149975 | None:intergenic | 5.0% |
| !!! | ACTATTTTTTTTTATTTTTT+TGG | - | chr1.1:53149957-53149976 | MS.gene49350:intron | 5.0% |
| ACGTATAGGGCACAAGTGGT+AGG | - | chr1.1:53150415-53150434 | MS.gene49350:intron | 50.0% | |
| ACTGAACTGAGGCTAGGACT+TGG | - | chr1.1:53149351-53149370 | MS.gene49350:intron | 50.0% | |
| AGCAGAAGAGCCTTCTCCTT+TGG | + | chr1.1:53149510-53149529 | None:intergenic | 50.0% | |
| AGTTGCAGGGCTGAAAAAGG+AGG | - | chr1.1:53149308-53149327 | MS.gene49350:CDS | 50.0% | |
| CGTATAGGGCACAAGTGGTA+GGG | - | chr1.1:53150416-53150435 | MS.gene49350:intron | 50.0% | |
| CTGTACGTATAGGGCACAAG+TGG | - | chr1.1:53150411-53150430 | MS.gene49350:intron | 50.0% | |
| GAGGAAACTGAACTGAGGCT+AGG | - | chr1.1:53149345-53149364 | MS.gene49350:intron | 50.0% | |
| GCTCTTCTGCTCTCTGATTC+TGG | - | chr1.1:53149519-53149538 | MS.gene49350:intron | 50.0% | |
| GCTTGTCGGTGATGTACCAT+GGG | - | chr1.1:53151431-53151450 | MS.gene49350:intron | 50.0% | |
| GGAAAGGAAGCCATTGGACT+AGG | - | chr1.1:53151752-53151771 | MS.gene49350:intron | 50.0% | |
| GGAAGTTGCAGGGCTGAAAA+AGG | - | chr1.1:53149305-53149324 | MS.gene49350:CDS | 50.0% | |
| TATGTCAGCACCTAGAGCCA+TGG | - | chr1.1:53152337-53152356 | MS.gene49350:CDS | 50.0% | |
| TGCTTGTCGGTGATGTACCA+TGG | - | chr1.1:53151430-53151449 | MS.gene49350:intron | 50.0% | |
| TTCTTACGGAATGACCGCAC+TGG | + | chr1.1:53150448-53150467 | None:intergenic | 50.0% | |
| ! | CTAAGGCATCAGAGAGCTCT+GGG | + | chr1.1:53150612-53150631 | None:intergenic | 50.0% |
| AGGCTAGGACTTGGATTGCC+AGG | - | chr1.1:53149360-53149379 | MS.gene49350:intron | 55.0% | |
| ATAGGGCACAAGTGGTAGGG+TGG | - | chr1.1:53150419-53150438 | MS.gene49350:intron | 55.0% | |
| GATGGCGACTGGATGCTTGT+CGG | - | chr1.1:53151417-53151436 | MS.gene49350:intron | 55.0% | |
| GCTGCCCAAAAGAGCAGTGA+AGG | - | chr1.1:53150475-53150494 | MS.gene49350:intron | 55.0% | |
| GGCTAGGACTTGGATTGCCA+GGG | - | chr1.1:53149361-53149380 | MS.gene49350:intron | 55.0% | |
| TTACGGAATGACCGCACTGG+TGG | + | chr1.1:53150445-53150464 | None:intergenic | 55.0% | |
| ! | GCTAAGGCATCAGAGAGCTC+TGG | + | chr1.1:53150613-53150632 | None:intergenic | 55.0% |
| TGGTAGGGTGGCCACCAGTG+CGG | - | chr1.1:53150431-53150450 | MS.gene49350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 53149303 | 53152382 | 53149303 | ID=MS.gene49350 |
| chr1.1 | mRNA | 53149303 | 53152382 | 53149303 | ID=MS.gene49350.t1;Parent=MS.gene49350 |
| chr1.1 | exon | 53152290 | 53152382 | 53152290 | ID=MS.gene49350.t1.exon1;Parent=MS.gene49350.t1 |
| chr1.1 | CDS | 53152290 | 53152382 | 53152290 | ID=cds.MS.gene49350.t1;Parent=MS.gene49350.t1 |
| chr1.1 | exon | 53152126 | 53152205 | 53152126 | ID=MS.gene49350.t1.exon2;Parent=MS.gene49350.t1 |
| chr1.1 | CDS | 53152126 | 53152205 | 53152126 | ID=cds.MS.gene49350.t1;Parent=MS.gene49350.t1 |
| chr1.1 | exon | 53151027 | 53151262 | 53151027 | ID=MS.gene49350.t1.exon3;Parent=MS.gene49350.t1 |
| chr1.1 | CDS | 53151027 | 53151262 | 53151027 | ID=cds.MS.gene49350.t1;Parent=MS.gene49350.t1 |
| chr1.1 | exon | 53150231 | 53150369 | 53150231 | ID=MS.gene49350.t1.exon4;Parent=MS.gene49350.t1 |
| chr1.1 | CDS | 53150231 | 53150369 | 53150231 | ID=cds.MS.gene49350.t1;Parent=MS.gene49350.t1 |
| chr1.1 | exon | 53149912 | 53149973 | 53149912 | ID=MS.gene49350.t1.exon5;Parent=MS.gene49350.t1 |
| chr1.1 | CDS | 53149912 | 53149973 | 53149912 | ID=cds.MS.gene49350.t1;Parent=MS.gene49350.t1 |
| chr1.1 | exon | 53149303 | 53149340 | 53149303 | ID=MS.gene49350.t1.exon6;Parent=MS.gene49350.t1 |
| chr1.1 | CDS | 53149303 | 53149340 | 53149303 | ID=cds.MS.gene49350.t1;Parent=MS.gene49350.t1 |
| Gene Sequence |
| Protein sequence |
