Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62691.t1 | XP_003630935.1 | 97.5 | 483 | 11 | 1 | 1 | 483 | 1 | 482 | 1.10E-269 | 938.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62691.t1 | Q91WC0 | 23.0 | 474 | 315 | 16 | 6 | 465 | 44 | 481 | 1.6e-16 | 89.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62691.t1 | G7LAK3 | 97.5 | 483 | 11 | 1 | 1 | 483 | 1 | 482 | 7.6e-270 | 938.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene62691.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene62691 | 0.804903 | 1.73E-49 | -1.69E-46 |
| MS.gene049171 | MS.gene62691 | 0.802125 | 6.51E-49 | -1.69E-46 |
| MS.gene049173 | MS.gene62691 | 0.829521 | 4.91E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene62691 | 0.845406 | 4.14E-59 | -1.69E-46 |
| MS.gene049222 | MS.gene62691 | 0.841489 | 4.61E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene62691 | 0.828743 | 7.59E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene62691 | 0.821244 | 4.48E-53 | -1.69E-46 |
| MS.gene049427 | MS.gene62691 | 0.821349 | 4.23E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene62691 | 0.828317 | 9.62E-55 | -1.69E-46 |
| MS.gene049627 | MS.gene62691 | 0.845223 | 4.64E-59 | -1.69E-46 |
| MS.gene049805 | MS.gene62691 | 0.807833 | 4.17E-50 | -1.69E-46 |
| MS.gene049828 | MS.gene62691 | 0.8045 | 2.10E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene62691 | 0.851576 | 8.11E-61 | -1.69E-46 |
| MS.gene050165 | MS.gene62691 | 0.83175 | 1.40E-55 | -1.69E-46 |
| MS.gene050333 | MS.gene62691 | 0.827481 | 1.53E-54 | -1.69E-46 |
| MS.gene050353 | MS.gene62691 | -0.852126 | 5.66E-61 | -1.69E-46 |
| MS.gene050354 | MS.gene62691 | -0.81371 | 2.23E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene62691 | 0.808752 | 2.65E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene62691 | 0.816128 | 6.49E-52 | -1.69E-46 |
| MS.gene050538 | MS.gene62691 | 0.822436 | 2.37E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene62691 | 0.819122 | 1.37E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene62691 | 0.823575 | 1.29E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene62691 | 0.825522 | 4.48E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene62691 | 0.84122 | 5.42E-58 | -1.69E-46 |
| MS.gene050783 | MS.gene62691 | 0.827308 | 1.68E-54 | -1.69E-46 |
| MS.gene050950 | MS.gene62691 | 0.811029 | 8.59E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene62691 | 0.806347 | 8.60E-50 | -1.69E-46 |
| MS.gene05100 | MS.gene62691 | 0.84238 | 2.68E-58 | -1.69E-46 |
| MS.gene051228 | MS.gene62691 | 0.801122 | 1.05E-48 | -1.69E-46 |
| MS.gene051387 | MS.gene62691 | 0.816729 | 4.76E-52 | -1.69E-46 |
| MS.gene051564 | MS.gene62691 | 0.81172 | 6.08E-51 | -1.69E-46 |
| MS.gene051566 | MS.gene62691 | 0.812601 | 3.91E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene62691 | 0.811595 | 6.47E-51 | -1.69E-46 |
| MS.gene051692 | MS.gene62691 | 0.825599 | 4.29E-54 | -1.69E-46 |
| MS.gene051694 | MS.gene62691 | 0.845751 | 3.34E-59 | -1.69E-46 |
| MS.gene051810 | MS.gene62691 | 0.829555 | 4.82E-55 | -1.69E-46 |
| MS.gene051858 | MS.gene62691 | 0.83542 | 1.70E-56 | -1.69E-46 |
| MS.gene052271 | MS.gene62691 | 0.824508 | 7.77E-54 | -1.69E-46 |
| MS.gene052379 | MS.gene62691 | 0.825818 | 3.81E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene62691 | 0.802162 | 6.39E-49 | -1.69E-46 |
| MS.gene052484 | MS.gene62691 | 0.829368 | 5.35E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene62691 | 0.809761 | 1.61E-50 | -1.69E-46 |
| MS.gene052670 | MS.gene62691 | 0.939839 | 6.46E-100 | -1.69E-46 |
| MS.gene052966 | MS.gene62691 | 0.809595 | 1.75E-50 | -1.69E-46 |
| MS.gene053104 | MS.gene62691 | 0.805778 | 1.13E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene62691 | 0.880091 | 7.30E-70 | -1.69E-46 |
| MS.gene053209 | MS.gene62691 | 0.807619 | 4.63E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene62691 | 0.846368 | 2.27E-59 | -1.69E-46 |
| MS.gene053286 | MS.gene62691 | 0.839297 | 1.72E-57 | -1.69E-46 |
| MS.gene053322 | MS.gene62691 | 0.858669 | 7.03E-63 | -1.69E-46 |
| MS.gene053574 | MS.gene62691 | 0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene62691 | 0.847151 | 1.39E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene62691 | 0.806236 | 9.07E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene62691 | 0.803421 | 3.51E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene62691 | 0.876646 | 1.18E-68 | -1.69E-46 |
| MS.gene054642 | MS.gene62691 | 0.828848 | 7.16E-55 | -1.69E-46 |
| MS.gene054802 | MS.gene62691 | 0.822396 | 2.42E-53 | -1.69E-46 |
| MS.gene054803 | MS.gene62691 | 0.821254 | 4.45E-53 | -1.69E-46 |
| MS.gene054804 | MS.gene62691 | 0.823782 | 1.15E-53 | -1.69E-46 |
| MS.gene054927 | MS.gene62691 | 0.8298 | 4.20E-55 | -1.69E-46 |
| MS.gene055212 | MS.gene62691 | 0.821513 | 3.88E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene62691 | 0.832361 | 9.88E-56 | -1.69E-46 |
| MS.gene055412 | MS.gene62691 | 0.801478 | 8.84E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene62691 | 0.867763 | 1.08E-65 | -1.69E-46 |
| MS.gene055502 | MS.gene62691 | 0.826002 | 3.44E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene62691 | 0.822768 | 1.99E-53 | -1.69E-46 |
| MS.gene055633 | MS.gene62691 | 0.820522 | 6.56E-53 | -1.69E-46 |
| MS.gene055636 | MS.gene62691 | 0.817415 | 3.34E-52 | -1.69E-46 |
| MS.gene055638 | MS.gene62691 | 0.822915 | 1.83E-53 | -1.69E-46 |
| MS.gene055647 | MS.gene62691 | 0.834137 | 3.57E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene62691 | 0.844179 | 8.88E-59 | -1.69E-46 |
| MS.gene05592 | MS.gene62691 | 0.80111 | 1.05E-48 | -1.69E-46 |
| MS.gene055941 | MS.gene62691 | 0.819289 | 1.26E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene62691 | 0.825147 | 5.49E-54 | -1.69E-46 |
| MS.gene056374 | MS.gene62691 | 0.838459 | 2.84E-57 | -1.69E-46 |
| MS.gene056409 | MS.gene62691 | 0.802095 | 6.60E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene62691 | 0.813341 | 2.69E-51 | -1.69E-46 |
| MS.gene056449 | MS.gene62691 | 0.817541 | 3.13E-52 | -1.69E-46 |
| MS.gene056611 | MS.gene62691 | 0.817639 | 2.97E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene62691 | 0.827639 | 1.40E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene62691 | 0.823906 | 1.08E-53 | -1.69E-46 |
| MS.gene057129 | MS.gene62691 | 0.852601 | 4.15E-61 | -1.69E-46 |
| MS.gene057146 | MS.gene62691 | 0.822085 | 2.86E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene62691 | 0.816476 | 5.42E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene62691 | 0.837149 | 6.16E-57 | -1.69E-46 |
| MS.gene058019 | MS.gene62691 | 0.815974 | 7.02E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene62691 | 0.807326 | 5.34E-50 | -1.69E-46 |
| MS.gene058323 | MS.gene62691 | 0.82088 | 5.43E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene62691 | 0.815369 | 9.58E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene62691 | 0.803526 | 3.34E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene62691 | 0.805258 | 1.46E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene62691 | 0.840172 | 1.02E-57 | -1.69E-46 |
| MS.gene059022 | MS.gene62691 | 0.823501 | 1.34E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene62691 | 0.8023 | 5.99E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene62691 | 0.824201 | 9.18E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene62691 | 0.802639 | 5.10E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene62691 | 0.80318 | 3.94E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene62691 | 0.859023 | 5.51E-63 | -1.69E-46 |
| MS.gene059677 | MS.gene62691 | 0.823333 | 1.47E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene62691 | 0.863913 | 1.77E-64 | -1.69E-46 |
| MS.gene059801 | MS.gene62691 | 0.8269 | 2.10E-54 | -1.69E-46 |
| MS.gene059902 | MS.gene62691 | 0.83548 | 1.64E-56 | -1.69E-46 |
| MS.gene059960 | MS.gene62691 | 0.8449 | 5.68E-59 | -1.69E-46 |
| MS.gene060193 | MS.gene62691 | 0.812452 | 4.21E-51 | -1.69E-46 |
| MS.gene060356 | MS.gene62691 | 0.836723 | 7.92E-57 | -1.69E-46 |
| MS.gene060482 | MS.gene62691 | 0.809282 | 2.04E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene62691 | 0.809217 | 2.11E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene62691 | 0.805527 | 1.28E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene62691 | 0.810852 | 9.38E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene62691 | 0.835686 | 1.45E-56 | -1.69E-46 |
| MS.gene061150 | MS.gene62691 | 0.832815 | 7.62E-56 | -1.69E-46 |
| MS.gene061171 | MS.gene62691 | 0.824215 | 9.11E-54 | -1.69E-46 |
| MS.gene061200 | MS.gene62691 | 0.874449 | 6.70E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62691.t1 | MTR_8g105200 | 97.516 | 483 | 11 | 1 | 1 | 483 | 1 | 482 | 0.0 | 963 |
| MS.gene62691.t1 | MTR_5g010630 | 92.233 | 103 | 5 | 2 | 198 | 300 | 5 | 104 | 1.84e-60 | 193 |
| MS.gene62691.t1 | MTR_2g067520 | 88.406 | 69 | 8 | 0 | 198 | 266 | 5 | 73 | 1.47e-37 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62691.t1 | AT1G24610 | 66.173 | 473 | 155 | 4 | 11 | 480 | 4 | 474 | 0.0 | 630 |
| MS.gene62691.t1 | AT1G14030 | 24.945 | 453 | 281 | 19 | 20 | 459 | 33 | 439 | 6.86e-14 | 74.3 |
Find 113 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCATCATCCATTAATT+TGG | 0.191527 | 4.2:-1549751 | None:intergenic |
| CAAATATGATGGTGCTCTTT+TGG | 0.205619 | 4.2:+1548473 | MS.gene62691:CDS |
| CTCGATTCCTCAAATGGTTT+AGG | 0.230593 | 4.2:+1546799 | MS.gene62691:CDS |
| ACACTTTCCCACCAAATTAA+TGG | 0.235094 | 4.2:+1549740 | MS.gene62691:CDS |
| CTATAATTACAGACTTCTTT+TGG | 0.248268 | 4.2:-1549827 | None:intergenic |
| CATCCATAGCAAAGTAATAA+AGG | 0.272419 | 4.2:-1548378 | None:intergenic |
| TCGATTCCTCAAATGGTTTA+GGG | 0.287954 | 4.2:+1546800 | MS.gene62691:CDS |
| TCCTGAACAATTCTAGCATT+TGG | 0.291593 | 4.2:-1548141 | None:intergenic |
| TTATTGAAGCAGGGTGCTTC+AGG | 0.306570 | 4.2:+1549774 | MS.gene62691:CDS |
| CCACCAAACGGATGCTTATC+TGG | 0.313373 | 4.2:-1547967 | None:intergenic |
| CTCAAATGGTTTAGGGTTAG+TGG | 0.331608 | 4.2:+1546807 | MS.gene62691:CDS |
| TCTTCCCCAGGAAAGAAAAT+AGG | 0.342405 | 4.2:-1547241 | None:intergenic |
| TGAATTGTGGGCAATGAAAC+TGG | 0.345575 | 4.2:+1547135 | MS.gene62691:CDS |
| GAGATGAAGCATCTACTTCT+TGG | 0.347456 | 4.2:-1547990 | None:intergenic |
| GTGGAAGATACCTTGAGATC+TGG | 0.349462 | 4.2:-1548597 | None:intergenic |
| TCCAAATGCTAGAATTGTTC+AGG | 0.369501 | 4.2:+1548140 | MS.gene62691:CDS |
| CAATTAACCTCCCATGTTCC+CGG | 0.370584 | 4.2:+1546931 | MS.gene62691:CDS |
| GGAGCAGGTGTAGAGAAATT+TGG | 0.377711 | 4.2:-1548528 | None:intergenic |
| GAAGTAGATGCTTCATCTCT+TGG | 0.384991 | 4.2:+1547994 | MS.gene62691:CDS |
| CATGGTAACAAGCAATCAAA+TGG | 0.388478 | 4.2:+1548057 | MS.gene62691:CDS |
| CACCCACATCTTTGTGCTAC+CGG | 0.389753 | 4.2:-1548172 | None:intergenic |
| AGTACTCCTTGCAAGTGATA+TGG | 0.393467 | 4.2:+1549596 | MS.gene62691:CDS |
| CTTCATGAAAGGGCAAAACT+TGG | 0.399181 | 4.2:+1547169 | MS.gene62691:CDS |
| GCTCAAAATCAAGAAGAAAT+CGG | 0.402032 | 4.2:-1547912 | None:intergenic |
| TGGAAGATACCTTGAGATCT+GGG | 0.409477 | 4.2:-1548596 | None:intergenic |
| GCAATTAGGTCAGTACCAAT+TGG | 0.411464 | 4.2:-1546844 | None:intergenic |
| TTGGTTAATATGGTTATAGT+TGG | 0.414989 | 4.2:+1546601 | None:intergenic |
| CACTAACCCTAAACCATTTG+AGG | 0.419235 | 4.2:-1546806 | None:intergenic |
| ATCCACACGATCTCATCAAA+TGG | 0.420118 | 4.2:+1546728 | MS.gene62691:CDS |
| GACCCTTTATTACTTTGCTA+TGG | 0.431078 | 4.2:+1548375 | MS.gene62691:CDS |
| AATAATAGAAGGTCGTTTGT+TGG | 0.431982 | 4.2:+1549563 | MS.gene62691:CDS |
| GCACAACTCGATTCCTCAAA+TGG | 0.432361 | 4.2:+1546793 | MS.gene62691:CDS |
| TTAGATGCTGAGGCTCCTCT+TGG | 0.432705 | 4.2:+1549657 | MS.gene62691:CDS |
| ATCCATAGCAAAGTAATAAA+GGG | 0.432856 | 4.2:-1548377 | None:intergenic |
| TGATTACACATGTCAATTAG+AGG | 0.440828 | 4.2:-1548108 | None:intergenic |
| GATGAAGATGCGCATGTTAG+TGG | 0.442848 | 4.2:-1546679 | None:intergenic |
| GTTAATATGGTTATAGTTGG+TGG | 0.443140 | 4.2:+1546604 | None:intergenic |
| AAGTGTACCTGGTGAAGAAT+AGG | 0.446363 | 4.2:-1547286 | None:intergenic |
| TTATAGTTGGTGGTGGTAGT+TGG | 0.452028 | 4.2:+1546614 | MS.gene62691:CDS |
| TTGAGCTCGATACAGTCATA+AGG | 0.453734 | 4.2:-1548453 | None:intergenic |
| TAGGAAGAGTGTAAGTTTGT+GGG | 0.460771 | 4.2:-1547222 | None:intergenic |
| GATGCTGCGAGCATGGCAGC+TGG | 0.474563 | 4.2:+1548495 | MS.gene62691:CDS |
| TGAGCTCGATACAGTCATAA+GGG | 0.476129 | 4.2:-1548452 | None:intergenic |
| TGATGAATCTTTATTGAAGC+AGG | 0.476763 | 4.2:+1549764 | MS.gene62691:CDS |
| TTCATCATCCATTAATTTGG+TGG | 0.478727 | 4.2:-1549748 | None:intergenic |
| TTCATGTAACAGGTGAGCTT+AGG | 0.480929 | 4.2:+1549531 | MS.gene62691:intron |
| ATGTAACAGGTGAGCTTAGG+TGG | 0.482998 | 4.2:+1549534 | MS.gene62691:intron |
| TGTGTTGAGGAAGAGCAATT+AGG | 0.483022 | 4.2:-1546858 | None:intergenic |
| ATAGGAAGAGTGTAAGTTTG+TGG | 0.491387 | 4.2:-1547223 | None:intergenic |
| CAATTAGGTCAGTACCAATT+GGG | 0.491707 | 4.2:-1546843 | None:intergenic |
| TTTGAAGCTTCTTCATGAAA+GGG | 0.494538 | 4.2:+1547159 | MS.gene62691:CDS |
| GTTTGAAGCTTCTTCATGAA+AGG | 0.494844 | 4.2:+1547158 | MS.gene62691:CDS |
| CTCTACACCTGCTCCATGGC+AGG | 0.495127 | 4.2:+1548536 | MS.gene62691:CDS |
| TGGTTTAGGGTTAGTGGCTA+AGG | 0.496899 | 4.2:+1546813 | MS.gene62691:CDS |
| ACACCAGATAAGCATCCGTT+TGG | 0.499859 | 4.2:+1547964 | MS.gene62691:CDS |
| GCTAAGGAAGATATCCCAAT+TGG | 0.505887 | 4.2:+1546829 | MS.gene62691:CDS |
| TGTGGGAGATTACTGATGTA+TGG | 0.507516 | 4.2:-1547205 | None:intergenic |
| GCATTTGGCAGATGAATTGT+GGG | 0.511625 | 4.2:+1547123 | MS.gene62691:intron |
| CCAGATAAGCATCCGTTTGG+TGG | 0.512174 | 4.2:+1547967 | MS.gene62691:CDS |
| TCAAGAGCATTCAAGTTACA+TGG | 0.514609 | 4.2:+1548039 | MS.gene62691:CDS |
| GGTAAAGCTTCTTTCATCAA+AGG | 0.514902 | 4.2:+1549875 | MS.gene62691:CDS |
| GGTGGGCAAGAAATAATAGA+AGG | 0.517366 | 4.2:+1549552 | MS.gene62691:CDS |
| TAGATGCTTCATCTCTTGGA+TGG | 0.521095 | 4.2:+1547998 | MS.gene62691:CDS |
| TCATCATCCATTAATTTGGT+GGG | 0.525608 | 4.2:-1549747 | None:intergenic |
| ATAAGTTCCTGCCATGGAGC+AGG | 0.528390 | 4.2:-1548543 | None:intergenic |
| GAAGCTTTACCTTCCTTGAG+AGG | 0.528724 | 4.2:-1549863 | None:intergenic |
| CTATCTCATCTAAATCTAGC+TGG | 0.528818 | 4.2:+1548567 | MS.gene62691:CDS |
| AATGACACACAGAGCAATCA+AGG | 0.529045 | 4.2:-1549709 | None:intergenic |
| AATATGGTTATAGTTGGTGG+TGG | 0.531556 | 4.2:+1546607 | None:intergenic |
| TCAATTAGAGGGAGCATCAT+GGG | 0.532994 | 4.2:-1548096 | None:intergenic |
| TCCACACGATCTCATCAAAT+GGG | 0.536822 | 4.2:+1546729 | MS.gene62691:CDS |
| TGGTGGTGGTAGTTGGAAAA+CGG | 0.543989 | 4.2:+1546621 | MS.gene62691:CDS |
| GTCAATTAGAGGGAGCATCA+TGG | 0.544285 | 4.2:-1548097 | None:intergenic |
| ATGGTAACAAGCAATCAAAT+GGG | 0.547291 | 4.2:+1548058 | MS.gene62691:CDS |
| TCACAAATCCATAATCAAGA+AGG | 0.549483 | 4.2:-1548419 | None:intergenic |
| TCTACTTCTTGGCCACCAAA+CGG | 0.549674 | 4.2:-1547979 | None:intergenic |
| ATCAAATGGGTAACAAGAGA+AGG | 0.550397 | 4.2:+1546742 | MS.gene62691:CDS |
| TGTGGCTGAGAAAGCAATCA+AGG | 0.555448 | 4.2:+1548347 | MS.gene62691:CDS |
| AGCATTTGGCAGATGAATTG+TGG | 0.556575 | 4.2:+1547122 | MS.gene62691:intron |
| CTATGCTCCTATTCTTCACC+AGG | 0.562752 | 4.2:+1547279 | MS.gene62691:CDS |
| TGGAGAAACCCCAGATCTCA+AGG | 0.564415 | 4.2:+1548587 | MS.gene62691:CDS |
| AAGCCGGTAGCACAAAGATG+TGG | 0.568257 | 4.2:+1548169 | MS.gene62691:CDS |
| GCTTCTTTCATCAAAGGAGA+CGG | 0.577964 | 4.2:+1549881 | MS.gene62691:CDS |
| AAGGAGACGGTCACTACTGA+AGG | 0.581558 | 4.2:+1549894 | MS.gene62691:CDS |
| GATGAATCTTTATTGAAGCA+GGG | 0.583312 | 4.2:+1549765 | MS.gene62691:CDS |
| CACTTGCCATATCACTTGCA+AGG | 0.586602 | 4.2:-1549602 | None:intergenic |
| CATGGGAGGTTAATTGAAGG+AGG | 0.592569 | 4.2:-1546924 | None:intergenic |
| AAATTCTTGATGTCTTCCCC+AGG | 0.592666 | 4.2:-1547253 | None:intergenic |
| TTGATGAGATCGTGTGGATG+AGG | 0.593115 | 4.2:-1546724 | None:intergenic |
| AAAGTCAAGCATGCATTAGT+CGG | 0.594145 | 4.2:+1547937 | MS.gene62691:CDS |
| GCTCTGTGTGTCATTGCACT+AGG | 0.596790 | 4.2:+1549717 | MS.gene62691:CDS |
| GAACATGGGAGGTTAATTGA+AGG | 0.597020 | 4.2:-1546927 | None:intergenic |
| GATTACACATGTCAATTAGA+GGG | 0.597579 | 4.2:-1548107 | None:intergenic |
| ACTTAAGTCTTTAGATGCTG+AGG | 0.601367 | 4.2:+1549647 | MS.gene62691:CDS |
| AAGTGCAGAGGAATGTGTTG+AGG | 0.602415 | 4.2:-1546871 | None:intergenic |
| CTAAAGACTTAAGTGTGTTG+AGG | 0.608231 | 4.2:-1549638 | None:intergenic |
| AAATGGGTAACAAGAGAAGG+TGG | 0.609234 | 4.2:+1546745 | MS.gene62691:CDS |
| AGATGCTTCATCTCTTGGAT+GGG | 0.610544 | 4.2:+1547999 | MS.gene62691:CDS |
| ATTTCTCTACACCTGCTCCA+TGG | 0.612721 | 4.2:+1548532 | MS.gene62691:CDS |
| TAGCACAAAGATGTGGGTGA+AGG | 0.614670 | 4.2:+1548176 | MS.gene62691:CDS |
| AGCCGGTAGCACAAAGATGT+GGG | 0.619848 | 4.2:+1548170 | MS.gene62691:CDS |
| GATAGAATAAGTTCCTGCCA+TGG | 0.621183 | 4.2:-1548549 | None:intergenic |
| ATTGTTCAGGAACAAGAAGC+CGG | 0.621234 | 4.2:+1548153 | MS.gene62691:CDS |
| TGTAACAGGTGAGCTTAGGT+GGG | 0.630878 | 4.2:+1549535 | MS.gene62691:intron |
| TCATCATCGTTGAAGTGCAG+AGG | 0.633506 | 4.2:-1546883 | None:intergenic |
| GGAAGATACCTTGAGATCTG+GGG | 0.633639 | 4.2:-1548595 | None:intergenic |
| GAATTGTGGGCAATGAAACT+GGG | 0.634097 | 4.2:+1547136 | MS.gene62691:CDS |
| TGTATCGAGCTCAAATATGA+TGG | 0.639565 | 4.2:+1548462 | MS.gene62691:CDS |
| AGGTCATTTGCAACACCAAG+AGG | 0.646673 | 4.2:-1549672 | None:intergenic |
| TTACTTACCGGGAACATGGG+AGG | 0.654333 | 4.2:-1546938 | None:intergenic |
| ACCCATTTGATGAGATCGTG+TGG | 0.664082 | 4.2:-1546730 | None:intergenic |
| TCAAGGTACGAAATACAGCA+AGG | 0.687972 | 4.2:-1549692 | None:intergenic |
| GTTGTGCTATCTTCACAGCA+CGG | 0.695139 | 4.2:-1546777 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTATTAACCATTCAA+TGG | - | chr4.2:1548800-1548819 | None:intergenic | 15.0% |
| !! | TTAAAAATGAAAACTACTAT+TGG | + | chr4.2:1548652-1548671 | MS.gene62691:intron | 15.0% |
| !!! | AATGTTTTTATAGCAAATAT+TGG | + | chr4.2:1549340-1549359 | MS.gene62691:intron | 15.0% |
| !!! | TTCAAATATACATGATTTTA+AGG | - | chr4.2:1548965-1548984 | None:intergenic | 15.0% |
| !! | AAAATTAGTATAATGCTTTG+TGG | + | chr4.2:1547354-1547373 | MS.gene62691:intron | 20.0% |
| !! | AAAGTTCATAGTTATTCTAT+GGG | - | chr4.2:1549314-1549333 | None:intergenic | 20.0% |
| !! | AACATAATGCGTAAAAATAA+TGG | - | chr4.2:1549268-1549287 | None:intergenic | 20.0% |
| !! | AGAAATTCAATATTTACCTT+AGG | + | chr4.2:1548323-1548342 | MS.gene62691:intron | 20.0% |
| !! | ATAACTAAATCGTGATAATT+AGG | - | chr4.2:1547717-1547736 | None:intergenic | 20.0% |
| !! | TAAATCAAATTATGACCTTA+TGG | - | chr4.2:1549506-1549525 | None:intergenic | 20.0% |
| !! | TTTAGATCGTTAAGTATATA+TGG | - | chr4.2:1549120-1549139 | None:intergenic | 20.0% |
| !!! | ATTTACTTTTTTCATGTAAC+AGG | + | chr4.2:1549521-1549540 | MS.gene62691:intron | 20.0% |
| !!! | GTCATTATACATAATTTTTC+AGG | - | chr4.2:1549048-1549067 | None:intergenic | 20.0% |
| ! | AAATTGCTCATTTCAAAAGT+GGG | - | chr4.2:1547748-1547767 | None:intergenic | 25.0% |
| ! | AGATTCATCATCCATTAATT+TGG | - | chr4.2:1549754-1549773 | None:intergenic | 25.0% |
| ! | ATCCATAGCAAAGTAATAAA+GGG | - | chr4.2:1548380-1548399 | None:intergenic | 25.0% |
| ! | ATGTATATTTGAATCCAGTT+TGG | + | chr4.2:1548972-1548991 | MS.gene62691:intron | 25.0% |
| ! | CAGTTTGGATGATTAATATA+TGG | + | chr4.2:1548987-1549006 | MS.gene62691:intron | 25.0% |
| ! | CATATATTAATCATCCAAAC+TGG | - | chr4.2:1548989-1549008 | None:intergenic | 25.0% |
| ! | GAAAGTTCATAGTTATTCTA+TGG | - | chr4.2:1549315-1549334 | None:intergenic | 25.0% |
| ! | GAGAAATGCATATAAGTATA+CGG | + | chr4.2:1547450-1547469 | MS.gene62691:intron | 25.0% |
| ! | GAGATTAATGACATTCAAAA+TGG | - | chr4.2:1548875-1548894 | None:intergenic | 25.0% |
| ! | TAAAAACCAGTGGTAAAATT+CGG | + | chr4.2:1547510-1547529 | MS.gene62691:intron | 25.0% |
| !! | AATACAGCTATAGAATTTTG+TGG | - | chr4.2:1548619-1548638 | None:intergenic | 25.0% |
| !! | ACCAATTGATATGAAAGTTT+TGG | - | chr4.2:1549466-1549485 | None:intergenic | 25.0% |
| !! | CCAATTGATATGAAAGTTTT+GGG | - | chr4.2:1549465-1549484 | None:intergenic | 25.0% |
| !! | CTATAATTACAGACTTCTTT+TGG | - | chr4.2:1549830-1549849 | None:intergenic | 25.0% |
| !!! | AAATTCGGTGTAAATAATGT+TGG | + | chr4.2:1547525-1547544 | MS.gene62691:intron | 25.0% |
| !!! | TAATTATTTTGAATGCCTTG+CGG | + | chr4.2:1547826-1547845 | MS.gene62691:intron | 25.0% |
| !!! | TGCGTAAAAATAATGGATTA+TGG | - | chr4.2:1549261-1549280 | None:intergenic | 25.0% |
| AATAATAGAAGGTCGTTTGT+TGG | + | chr4.2:1549563-1549582 | MS.gene62691:CDS | 30.0% | |
| AATTGCTCATTTCAAAAGTG+GGG | - | chr4.2:1547747-1547766 | None:intergenic | 30.0% | |
| ACATTCAAAATGGTCGTTAA+CGG | - | chr4.2:1548865-1548884 | None:intergenic | 30.0% | |
| ATATATGTGTTTGTGTGTGT+TGG | + | chr4.2:1549018-1549037 | MS.gene62691:intron | 30.0% | |
| ATGGTAACAAGCAATCAAAT+GGG | + | chr4.2:1548058-1548077 | MS.gene62691:CDS | 30.0% | |
| ATGTAATGAAAAACCTCTCA+AGG | + | chr4.2:1549850-1549869 | MS.gene62691:CDS | 30.0% | |
| ATTAGTATTGTCTCTTTCAC+CGG | + | chr4.2:1549374-1549393 | MS.gene62691:intron | 30.0% | |
| CAAATTGCTCATTTCAAAAG+TGG | - | chr4.2:1547749-1547768 | None:intergenic | 30.0% | |
| CATCCATAGCAAAGTAATAA+AGG | - | chr4.2:1548381-1548400 | None:intergenic | 30.0% | |
| CCCAAAACTTTCATATCAAT+TGG | + | chr4.2:1549462-1549481 | MS.gene62691:intron | 30.0% | |
| CTCAGTGTCTATTAATTATG+TGG | + | chr4.2:1547672-1547691 | MS.gene62691:intron | 30.0% | |
| GATGAATCTTTATTGAAGCA+GGG | + | chr4.2:1549765-1549784 | MS.gene62691:CDS | 30.0% | |
| GATTACACATGTCAATTAGA+GGG | - | chr4.2:1548110-1548129 | None:intergenic | 30.0% | |
| GCTCAAAATCAAGAAGAAAT+CGG | - | chr4.2:1547915-1547934 | None:intergenic | 30.0% | |
| GTATGTTTGAACACAAATTG+TGG | + | chr4.2:1548908-1548927 | MS.gene62691:intron | 30.0% | |
| GTTGAATAAATTGGACAATG+TGG | + | chr4.2:1547098-1547117 | MS.gene62691:intron | 30.0% | |
| TCACAAATCCATAATCAAGA+AGG | - | chr4.2:1548422-1548441 | None:intergenic | 30.0% | |
| TGAATAAGTTAAGAGGATTC+AGG | - | chr4.2:1549408-1549427 | None:intergenic | 30.0% | |
| TGATGAATCTTTATTGAAGC+AGG | + | chr4.2:1549764-1549783 | MS.gene62691:CDS | 30.0% | |
| TGATTACACATGTCAATTAG+AGG | - | chr4.2:1548111-1548130 | None:intergenic | 30.0% | |
| TTCATAGTTATTCTATGGGA+AGG | - | chr4.2:1549310-1549329 | None:intergenic | 30.0% | |
| ! | GATCTTTTCCTTCTTGATTA+TGG | + | chr4.2:1548411-1548430 | MS.gene62691:CDS | 30.0% |
| ! | GATTTTTGTGTAAAAACCAG+TGG | + | chr4.2:1547500-1547519 | MS.gene62691:intron | 30.0% |
| ! | TCAATATTTACCTTAGGTTG+TGG | + | chr4.2:1548329-1548348 | MS.gene62691:intron | 30.0% |
| ! | TCATCATCCATTAATTTGGT+GGG | - | chr4.2:1549750-1549769 | None:intergenic | 30.0% |
| ! | TTATCTCCAAGTGTAGTTTT+GGG | + | chr4.2:1547781-1547800 | MS.gene62691:intron | 30.0% |
| ! | TTCATCATCCATTAATTTGG+TGG | - | chr4.2:1549751-1549770 | None:intergenic | 30.0% |
| ! | TTTATCTCCAAGTGTAGTTT+TGG | + | chr4.2:1547780-1547799 | MS.gene62691:intron | 30.0% |
| ! | TTTGAAGCTTCTTCATGAAA+GGG | + | chr4.2:1547159-1547178 | MS.gene62691:CDS | 30.0% |
| !! | TTTCTTTCTAGAGTCTTGTT+TGG | - | chr4.2:1547046-1547065 | None:intergenic | 30.0% |
| !!! | CACTTTTGAAATGAGCAATT+TGG | + | chr4.2:1547747-1547766 | MS.gene62691:intron | 30.0% |
| AAAGTCAAGCATGCATTAGT+CGG | + | chr4.2:1547937-1547956 | MS.gene62691:CDS | 35.0% | |
| AAATTCATGAATCACGAGAC+AGG | + | chr4.2:1547876-1547895 | MS.gene62691:intron | 35.0% | |
| AACAGTAAGTAAAGTGTACC+TGG | - | chr4.2:1547300-1547319 | None:intergenic | 35.0% | |
| AATGAAAAACCTCTCAAGGA+AGG | + | chr4.2:1549854-1549873 | MS.gene62691:CDS | 35.0% | |
| AATTCATGAGCTAATTGAGC+TGG | - | chr4.2:1546969-1546988 | None:intergenic | 35.0% | |
| ACACTTGGAGATAAACTATG+CGG | - | chr4.2:1547775-1547794 | None:intergenic | 35.0% | |
| ACACTTTCCCACCAAATTAA+TGG | + | chr4.2:1549740-1549759 | MS.gene62691:CDS | 35.0% | |
| ACTTAAGTCTTTAGATGCTG+AGG | + | chr4.2:1549647-1549666 | MS.gene62691:CDS | 35.0% | |
| AGATAGACAATTGTAGCTTC+TGG | - | chr4.2:1547654-1547673 | None:intergenic | 35.0% | |
| ATCAAATGGGTAACAAGAGA+AGG | + | chr4.2:1546742-1546761 | MS.gene62691:CDS | 35.0% | |
| ATTGCTCATTTCAAAAGTGG+GGG | - | chr4.2:1547746-1547765 | None:intergenic | 35.0% | |
| CAAGGGTTGAATAAGTTAAG+AGG | - | chr4.2:1549415-1549434 | None:intergenic | 35.0% | |
| CAATTAGGTCAGTACCAATT+GGG | - | chr4.2:1546846-1546865 | None:intergenic | 35.0% | |
| CATGGTAACAAGCAATCAAA+TGG | + | chr4.2:1548057-1548076 | MS.gene62691:CDS | 35.0% | |
| CTAAAGACTTAAGTGTGTTG+AGG | - | chr4.2:1549641-1549660 | None:intergenic | 35.0% | |
| CTATCTCATCTAAATCTAGC+TGG | + | chr4.2:1548567-1548586 | MS.gene62691:CDS | 35.0% | |
| CTCTTAACTTATTCAACCCT+TGG | + | chr4.2:1549413-1549432 | MS.gene62691:intron | 35.0% | |
| GACCCTTTATTACTTTGCTA+TGG | + | chr4.2:1548375-1548394 | MS.gene62691:CDS | 35.0% | |
| GGTAAAGCTTCTTTCATCAA+AGG | + | chr4.2:1549875-1549894 | MS.gene62691:CDS | 35.0% | |
| GGTTAATTACGTCCATTGAA+TGG | + | chr4.2:1548785-1548804 | MS.gene62691:intron | 35.0% | |
| GTCGTCGATGTTGAATAAAT+TGG | + | chr4.2:1547089-1547108 | MS.gene62691:intron | 35.0% | |
| TCCAAATGCTAGAATTGTTC+AGG | + | chr4.2:1548140-1548159 | MS.gene62691:CDS | 35.0% | |
| TCCTGAACAATTCTAGCATT+TGG | - | chr4.2:1548144-1548163 | None:intergenic | 35.0% | |
| TCGATTCCTCAAATGGTTTA+GGG | + | chr4.2:1546800-1546819 | MS.gene62691:CDS | 35.0% | |
| TCGGTGTAAATAATGTTGGT+AGG | + | chr4.2:1547529-1547548 | MS.gene62691:intron | 35.0% | |
| TGTATCGAGCTCAAATATGA+TGG | + | chr4.2:1548462-1548481 | MS.gene62691:CDS | 35.0% | |
| TTAGTATTGTCTCTTTCACC+GGG | + | chr4.2:1549375-1549394 | MS.gene62691:intron | 35.0% | |
| ! | AATTTTACTTACCGGGAACA+TGG | - | chr4.2:1546945-1546964 | None:intergenic | 35.0% |
| ! | ACTCTTCCTATTTTCTTTCC+TGG | + | chr4.2:1547235-1547254 | MS.gene62691:CDS | 35.0% |
| ! | AGCTGGTAATTTTACTTACC+GGG | - | chr4.2:1546952-1546971 | None:intergenic | 35.0% |
| ! | ATAGGAAGAGTGTAAGTTTG+TGG | - | chr4.2:1547226-1547245 | None:intergenic | 35.0% |
| ! | ATTTTACTTACCGGGAACAT+GGG | - | chr4.2:1546944-1546963 | None:intergenic | 35.0% |
| ! | CAAAACTTGGATCTTTTTGG+TGG | + | chr4.2:1547182-1547201 | MS.gene62691:CDS | 35.0% |
| ! | CTCTTCCTATTTTCTTTCCT+GGG | + | chr4.2:1547236-1547255 | MS.gene62691:CDS | 35.0% |
| ! | CTTTTGGATTCTGAACTGAA+TGG | - | chr4.2:1549814-1549833 | None:intergenic | 35.0% |
| ! | GAGCTGGTAATTTTACTTAC+CGG | - | chr4.2:1546953-1546972 | None:intergenic | 35.0% |
| ! | GTTTGAAGCTTCTTCATGAA+AGG | + | chr4.2:1547158-1547177 | MS.gene62691:CDS | 35.0% |
| ! | TAGGAAGAGTGTAAGTTTGT+GGG | - | chr4.2:1547225-1547244 | None:intergenic | 35.0% |
| ! | TCTTCCTATTTTCTTTCCTG+GGG | + | chr4.2:1547237-1547256 | MS.gene62691:CDS | 35.0% |
| ! | TGTTTTCCCTCTGTTCATTA+AGG | + | chr4.2:1549284-1549303 | MS.gene62691:intron | 35.0% |
| ! | TTTACACCGAATTTTACCAC+TGG | - | chr4.2:1547519-1547538 | None:intergenic | 35.0% |
| !! | CAAATATGATGGTGCTCTTT+TGG | + | chr4.2:1548473-1548492 | MS.gene62691:CDS | 35.0% |
| !! | TATCTCCAAGTGTAGTTTTG+GGG | + | chr4.2:1547782-1547801 | MS.gene62691:intron | 35.0% |
| !! | TCAAGAGCATTCAAGTTACA+TGG | + | chr4.2:1548039-1548058 | MS.gene62691:CDS | 35.0% |
| AAATGGGTAACAAGAGAAGG+TGG | + | chr4.2:1546745-1546764 | MS.gene62691:CDS | 40.0% | |
| AAATTCTTGATGTCTTCCCC+AGG | - | chr4.2:1547256-1547275 | None:intergenic | 40.0% | |
| AAGTGTACCTGGTGAAGAAT+AGG | - | chr4.2:1547289-1547308 | None:intergenic | 40.0% | |
| AATGACACACAGAGCAATCA+AGG | - | chr4.2:1549712-1549731 | None:intergenic | 40.0% | |
| AGATGCTTCATCTCTTGGAT+GGG | + | chr4.2:1547999-1548018 | MS.gene62691:CDS | 40.0% | |
| AGCATTTGGCAGATGAATTG+TGG | + | chr4.2:1547122-1547141 | MS.gene62691:intron | 40.0% | |
| AGTACTCCTTGCAAGTGATA+TGG | + | chr4.2:1549596-1549615 | MS.gene62691:CDS | 40.0% | |
| ATCCACACGATCTCATCAAA+TGG | + | chr4.2:1546728-1546747 | MS.gene62691:CDS | 40.0% | |
| ATGTTAGCACAAGAGCCATA+AGG | + | chr4.2:1549488-1549507 | MS.gene62691:intron | 40.0% | |
| ATTGTTCAGGAACAAGAAGC+CGG | + | chr4.2:1548153-1548172 | MS.gene62691:CDS | 40.0% | |
| CACTAACCCTAAACCATTTG+AGG | - | chr4.2:1546809-1546828 | None:intergenic | 40.0% | |
| CTCGATTCCTCAAATGGTTT+AGG | + | chr4.2:1546799-1546818 | MS.gene62691:CDS | 40.0% | |
| CTTCATGAAAGGGCAAAACT+TGG | + | chr4.2:1547169-1547188 | MS.gene62691:CDS | 40.0% | |
| GAACATGGGAGGTTAATTGA+AGG | - | chr4.2:1546930-1546949 | None:intergenic | 40.0% | |
| GAAGTAGATGCTTCATCTCT+TGG | + | chr4.2:1547994-1548013 | MS.gene62691:CDS | 40.0% | |
| GAATTGTGGGCAATGAAACT+GGG | + | chr4.2:1547136-1547155 | MS.gene62691:CDS | 40.0% | |
| GATAGAATAAGTTCCTGCCA+TGG | - | chr4.2:1548552-1548571 | None:intergenic | 40.0% | |
| GCAATTAGGTCAGTACCAAT+TGG | - | chr4.2:1546847-1546866 | None:intergenic | 40.0% | |
| GCATTTGGCAGATGAATTGT+GGG | + | chr4.2:1547123-1547142 | MS.gene62691:intron | 40.0% | |
| GCTAAGGAAGATATCCCAAT+TGG | + | chr4.2:1546829-1546848 | MS.gene62691:CDS | 40.0% | |
| GCTTACTGTACTTTGCAGAA+AGG | + | chr4.2:1549199-1549218 | MS.gene62691:intron | 40.0% | |
| GCTTCTTTCATCAAAGGAGA+CGG | + | chr4.2:1549881-1549900 | MS.gene62691:CDS | 40.0% | |
| GGTGGGCAAGAAATAATAGA+AGG | + | chr4.2:1549552-1549571 | MS.gene62691:CDS | 40.0% | |
| GTTAGCGCTGTTAAAGTATG+TGG | + | chr4.2:1548764-1548783 | MS.gene62691:intron | 40.0% | |
| TAGATGCTTCATCTCTTGGA+TGG | + | chr4.2:1547998-1548017 | MS.gene62691:CDS | 40.0% | |
| TAGTATTGTCTCTTTCACCG+GGG | + | chr4.2:1549376-1549395 | MS.gene62691:intron | 40.0% | |
| TCAAGGTACGAAATACAGCA+AGG | - | chr4.2:1549695-1549714 | None:intergenic | 40.0% | |
| TCCACACGATCTCATCAAAT+GGG | + | chr4.2:1546729-1546748 | MS.gene62691:CDS | 40.0% | |
| TCTTCCCCAGGAAAGAAAAT+AGG | - | chr4.2:1547244-1547263 | None:intergenic | 40.0% | |
| TGAATTGTGGGCAATGAAAC+TGG | + | chr4.2:1547135-1547154 | MS.gene62691:CDS | 40.0% | |
| TGAGCTCGATACAGTCATAA+GGG | - | chr4.2:1548455-1548474 | None:intergenic | 40.0% | |
| TGGAAGATACCTTGAGATCT+GGG | - | chr4.2:1548599-1548618 | None:intergenic | 40.0% | |
| TGTGGGAGATTACTGATGTA+TGG | - | chr4.2:1547208-1547227 | None:intergenic | 40.0% | |
| TGTGTTGAGGAAGAGCAATT+AGG | - | chr4.2:1546861-1546880 | None:intergenic | 40.0% | |
| TTCATGTAACAGGTGAGCTT+AGG | + | chr4.2:1549531-1549550 | MS.gene62691:intron | 40.0% | |
| TTGAGCTCGATACAGTCATA+AGG | - | chr4.2:1548456-1548475 | None:intergenic | 40.0% | |
| TTGGACAATGTGGTAGCATT+TGG | + | chr4.2:1547108-1547127 | MS.gene62691:intron | 40.0% | |
| ! | CTCAAATGGTTTAGGGTTAG+TGG | + | chr4.2:1546807-1546826 | MS.gene62691:CDS | 40.0% |
| ! | GAGATGAAGCATCTACTTCT+TGG | - | chr4.2:1547993-1548012 | None:intergenic | 40.0% |
| ! | GGGCAAAACTTGGATCTTTT+TGG | + | chr4.2:1547179-1547198 | MS.gene62691:CDS | 40.0% |
| !! | TCAATTAGAGGGAGCATCAT+GGG | - | chr4.2:1548099-1548118 | None:intergenic | 40.0% |
| !! | TTATAGTTGGTGGTGGTAGT+TGG | + | chr4.2:1546614-1546633 | MS.gene62691:CDS | 40.0% |
| AAGTGCAGAGGAATGTGTTG+AGG | - | chr4.2:1546874-1546893 | None:intergenic | 45.0% | |
| ACAATTGTAGCTTCTGGTGC+TGG | - | chr4.2:1547648-1547667 | None:intergenic | 45.0% | |
| ACACCAGATAAGCATCCGTT+TGG | + | chr4.2:1547964-1547983 | MS.gene62691:CDS | 45.0% | |
| ACCCATTTGATGAGATCGTG+TGG | - | chr4.2:1546733-1546752 | None:intergenic | 45.0% | |
| AGGTCATTTGCAACACCAAG+AGG | - | chr4.2:1549675-1549694 | None:intergenic | 45.0% | |
| AGTTGCACATTGCTCTTGTG+AGG | - | chr4.2:1547575-1547594 | None:intergenic | 45.0% | |
| ATGTAACAGGTGAGCTTAGG+TGG | + | chr4.2:1549534-1549553 | MS.gene62691:intron | 45.0% | |
| ATTTCTCTACACCTGCTCCA+TGG | + | chr4.2:1548532-1548551 | MS.gene62691:CDS | 45.0% | |
| CAATTAACCTCCCATGTTCC+CGG | + | chr4.2:1546931-1546950 | MS.gene62691:CDS | 45.0% | |
| CACTTGCCATATCACTTGCA+AGG | - | chr4.2:1549605-1549624 | None:intergenic | 45.0% | |
| CATGGGAGGTTAATTGAAGG+AGG | - | chr4.2:1546927-1546946 | None:intergenic | 45.0% | |
| CTATGCTCCTATTCTTCACC+AGG | + | chr4.2:1547279-1547298 | MS.gene62691:CDS | 45.0% | |
| GAAGCTTTACCTTCCTTGAG+AGG | - | chr4.2:1549866-1549885 | None:intergenic | 45.0% | |
| GATGAAGATGCGCATGTTAG+TGG | - | chr4.2:1546682-1546701 | None:intergenic | 45.0% | |
| GCACAACTCGATTCCTCAAA+TGG | + | chr4.2:1546793-1546812 | MS.gene62691:CDS | 45.0% | |
| GGAAGATACCTTGAGATCTG+GGG | - | chr4.2:1548598-1548617 | None:intergenic | 45.0% | |
| GGAAGGCCTTAATGAACAGA+GGG | - | chr4.2:1549293-1549312 | None:intergenic | 45.0% | |
| GGAGCAGGTGTAGAGAAATT+TGG | - | chr4.2:1548531-1548550 | None:intergenic | 45.0% | |
| GTGGAAGATACCTTGAGATC+TGG | - | chr4.2:1548600-1548619 | None:intergenic | 45.0% | |
| GTTGTGCTATCTTCACAGCA+CGG | - | chr4.2:1546780-1546799 | None:intergenic | 45.0% | |
| TAGCACAAAGATGTGGGTGA+AGG | + | chr4.2:1548176-1548195 | MS.gene62691:CDS | 45.0% | |
| TCATCATCGTTGAAGTGCAG+AGG | - | chr4.2:1546886-1546905 | None:intergenic | 45.0% | |
| TCTACTTCTTGGCCACCAAA+CGG | - | chr4.2:1547982-1548001 | None:intergenic | 45.0% | |
| TGACACCCCAAAACTACACT+TGG | - | chr4.2:1547790-1547809 | None:intergenic | 45.0% | |
| TGTAACAGGTGAGCTTAGGT+GGG | + | chr4.2:1549535-1549554 | MS.gene62691:intron | 45.0% | |
| TGTGGCTGAGAAAGCAATCA+AGG | + | chr4.2:1548347-1548366 | MS.gene62691:CDS | 45.0% | |
| TTGATGAGATCGTGTGGATG+AGG | - | chr4.2:1546727-1546746 | None:intergenic | 45.0% | |
| ! | TGGTTTAGGGTTAGTGGCTA+AGG | + | chr4.2:1546813-1546832 | MS.gene62691:CDS | 45.0% |
| ! | TTATTGAAGCAGGGTGCTTC+AGG | + | chr4.2:1549774-1549793 | MS.gene62691:CDS | 45.0% |
| !! | AGCACAACTGATTTGAGCCA+AGG | - | chr4.2:1549433-1549452 | None:intergenic | 45.0% |
| !! | GCACAACTGATTTGAGCCAA+GGG | - | chr4.2:1549432-1549451 | None:intergenic | 45.0% |
| !! | GTCAATTAGAGGGAGCATCA+TGG | - | chr4.2:1548100-1548119 | None:intergenic | 45.0% |
| !! | TGGTGGTGGTAGTTGGAAAA+CGG | + | chr4.2:1546621-1546640 | MS.gene62691:CDS | 45.0% |
| AAGCCGGTAGCACAAAGATG+TGG | + | chr4.2:1548169-1548188 | MS.gene62691:CDS | 50.0% | |
| AAGGAGACGGTCACTACTGA+AGG | + | chr4.2:1549894-1549913 | MS.gene62691:CDS | 50.0% | |
| AGCCGGTAGCACAAAGATGT+GGG | + | chr4.2:1548170-1548189 | MS.gene62691:CDS | 50.0% | |
| ATAAGTTCCTGCCATGGAGC+AGG | - | chr4.2:1548546-1548565 | None:intergenic | 50.0% | |
| CACCCACATCTTTGTGCTAC+CGG | - | chr4.2:1548175-1548194 | None:intergenic | 50.0% | |
| CCACCAAACGGATGCTTATC+TGG | - | chr4.2:1547970-1547989 | None:intergenic | 50.0% | |
| CCAGATAAGCATCCGTTTGG+TGG | + | chr4.2:1547967-1547986 | MS.gene62691:CDS | 50.0% | |
| GCTTTCTCAGCCACAACCTA+AGG | - | chr4.2:1548342-1548361 | None:intergenic | 50.0% | |
| GGGAAGGCCTTAATGAACAG+AGG | - | chr4.2:1549294-1549313 | None:intergenic | 50.0% | |
| GTGTGTGTGTGTGTGTGTCT+GGG | - | chr4.2:1548238-1548257 | None:intergenic | 50.0% | |
| TGCCAAACTGCAAATCCGCA+AGG | - | chr4.2:1547844-1547863 | None:intergenic | 50.0% | |
| TGCCTTGCGGATTTGCAGTT+TGG | + | chr4.2:1547839-1547858 | MS.gene62691:intron | 50.0% | |
| TGGAGAAACCCCAGATCTCA+AGG | + | chr4.2:1548587-1548606 | MS.gene62691:CDS | 50.0% | |
| TGTGTGTGTGTGTGTGTGTC+TGG | - | chr4.2:1548239-1548258 | None:intergenic | 50.0% | |
| TTACTTACCGGGAACATGGG+AGG | - | chr4.2:1546941-1546960 | None:intergenic | 50.0% | |
| TTAGATGCTGAGGCTCCTCT+TGG | + | chr4.2:1549657-1549676 | MS.gene62691:CDS | 50.0% | |
| ! | GAGGATTCAGGTTCAAACCC+CGG | - | chr4.2:1549396-1549415 | None:intergenic | 50.0% |
| ! | GCTCTGTGTGTCATTGCACT+AGG | + | chr4.2:1549717-1549736 | MS.gene62691:CDS | 50.0% |
| ! | TCTTTTGGATGCTGCGAGCA+TGG | + | chr4.2:1548488-1548507 | MS.gene62691:CDS | 50.0% |
| !! | CTGGTGCTGGTCACAAATGT+TGG | - | chr4.2:1547635-1547654 | None:intergenic | 50.0% |
| ATCTGCAGTGCAGTGCAGAG+AGG | - | chr4.2:1547380-1547399 | None:intergenic | 55.0% | |
| GTCTGGGAGAGGAGTCATGA+AGG | - | chr4.2:1548222-1548241 | None:intergenic | 55.0% | |
| TGTGTGTGTGTGTCTGGGAG+AGG | - | chr4.2:1548233-1548252 | None:intergenic | 55.0% | |
| CTCTACACCTGCTCCATGGC+AGG | + | chr4.2:1548536-1548555 | MS.gene62691:CDS | 60.0% | |
| GATGCTGCGAGCATGGCAGC+TGG | + | chr4.2:1548495-1548514 | MS.gene62691:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 1546610 | 1549920 | 1546610 | ID=MS.gene62691 |
| chr4.2 | mRNA | 1546610 | 1549920 | 1546610 | ID=MS.gene62691.t1;Parent=MS.gene62691 |
| chr4.2 | exon | 1546610 | 1546952 | 1546610 | ID=MS.gene62691.t1.exon1;Parent=MS.gene62691.t1 |
| chr4.2 | CDS | 1546610 | 1546952 | 1546610 | ID=cds.MS.gene62691.t1;Parent=MS.gene62691.t1 |
| chr4.2 | exon | 1547134 | 1547300 | 1547134 | ID=MS.gene62691.t1.exon2;Parent=MS.gene62691.t1 |
| chr4.2 | CDS | 1547134 | 1547300 | 1547134 | ID=cds.MS.gene62691.t1;Parent=MS.gene62691.t1 |
| chr4.2 | exon | 1547898 | 1548197 | 1547898 | ID=MS.gene62691.t1.exon3;Parent=MS.gene62691.t1 |
| chr4.2 | CDS | 1547898 | 1548197 | 1547898 | ID=cds.MS.gene62691.t1;Parent=MS.gene62691.t1 |
| chr4.2 | exon | 1548345 | 1548608 | 1548345 | ID=MS.gene62691.t1.exon4;Parent=MS.gene62691.t1 |
| chr4.2 | CDS | 1548345 | 1548608 | 1548345 | ID=cds.MS.gene62691.t1;Parent=MS.gene62691.t1 |
| chr4.2 | exon | 1549543 | 1549920 | 1549543 | ID=MS.gene62691.t1.exon5;Parent=MS.gene62691.t1 |
| chr4.2 | CDS | 1549543 | 1549920 | 1549543 | ID=cds.MS.gene62691.t1;Parent=MS.gene62691.t1 |
| Gene Sequence |
| Protein sequence |
