AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85171


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85171.t1 MTR_2g100620 98.023 354 7 0 1 354 1 354 0.0 712
MS.gene85171.t1 MTR_8g014910 77.054 353 81 0 1 353 2 354 0.0 572
MS.gene85171.t1 MTR_2g084585 59.884 344 137 1 10 353 9 351 5.42e-151 429
MS.gene85171.t1 MTR_4g056280 53.061 343 160 1 11 353 10 351 1.71e-131 380
MS.gene85171.t1 MTR_4g056160 52.439 328 154 2 28 353 24 351 3.92e-121 353
MS.gene85171.t1 MTR_5g084750 45.597 318 172 1 29 346 28 344 1.05e-99 299
MS.gene85171.t1 MTR_3g082830 45.201 323 176 1 29 351 36 357 5.19e-99 297
MS.gene85171.t1 MTR_5g084790 43.125 320 181 1 29 348 30 348 1.40e-96 291
MS.gene85171.t1 MTR_3g464730 42.493 353 193 5 1 350 2 347 6.70e-95 286
MS.gene85171.t1 MTR_1g025780 42.398 342 192 4 9 348 17 355 2.07e-94 286
MS.gene85171.t1 MTR_5g084770 40.896 335 192 3 23 354 20 351 5.48e-93 281
MS.gene85171.t1 MTR_5g074270 44.127 315 171 4 31 342 33 345 1.84e-89 273
MS.gene85171.t1 MTR_5g022630 40.922 347 199 4 9 350 18 363 5.39e-88 269
MS.gene85171.t1 MTR_8g075230 40.798 326 192 1 25 350 30 354 2.32e-86 265
MS.gene85171.t1 MTR_1g025760 38.304 342 206 4 9 348 58 396 4.83e-85 263
MS.gene85171.t1 MTR_1g025700 38.953 344 208 2 5 348 24 365 8.19e-84 259
MS.gene85171.t1 MTR_8g075200 39.252 321 194 1 30 350 40 359 2.77e-83 259
MS.gene85171.t1 MTR_2g015080 38.710 341 197 6 7 337 14 352 3.85e-83 257
MS.gene85171.t1 MTR_4g087985 38.973 331 185 5 31 346 36 364 4.29e-83 257
MS.gene85171.t1 MTR_5g022640 37.861 346 210 3 9 350 18 362 4.20e-82 254
MS.gene85171.t1 MTR_1108s0010 53.394 221 91 2 133 353 2 210 4.51e-82 249
MS.gene85171.t1 MTR_8g075220 38.532 327 195 3 30 351 39 364 9.52e-82 253
MS.gene85171.t1 MTR_3g114090 39.130 322 193 3 30 350 35 354 9.22e-81 251
MS.gene85171.t1 MTR_1g025720 39.683 315 184 4 30 342 36 346 1.42e-80 250
MS.gene85171.t1 MTR_3g114120 39.938 323 192 2 26 348 42 362 6.81e-80 249
MS.gene85171.t1 MTR_1g025680 39.875 321 190 3 29 348 32 350 9.16e-80 251
MS.gene85171.t1 MTR_1g025910 39.103 312 184 5 36 345 41 348 1.14e-69 223
MS.gene85171.t1 MTR_1g069175 38.854 314 179 6 31 337 33 340 6.99e-69 220
MS.gene85171.t1 MTR_5g083040 36.036 333 195 6 29 350 30 355 2.62e-68 219
MS.gene85171.t1 MTR_6g021530 35.673 342 211 8 10 346 7 344 6.90e-64 207
MS.gene85171.t1 MTR_0565s0010 36.812 345 202 10 3 342 9 342 1.12e-63 207
MS.gene85171.t1 MTR_7g116570 35.671 328 202 7 23 346 26 348 1.72e-63 206
MS.gene85171.t1 MTR_8g079050 35.202 321 198 6 35 347 41 359 2.69e-63 206
MS.gene85171.t1 MTR_7g116500 35.241 332 197 9 26 346 23 347 3.35e-63 206
MS.gene85171.t1 MTR_7g116510 34.473 351 216 7 1 347 1 341 9.01e-63 204
MS.gene85171.t1 MTR_7g116520 35.938 320 196 7 31 346 34 348 1.21e-62 204
MS.gene85171.t1 MTR_8g087890 36.364 341 201 8 9 342 9 340 2.02e-62 203
MS.gene85171.t1 MTR_1g079540 35.535 318 198 6 31 345 31 344 5.96e-62 202
MS.gene85171.t1 MTR_4g019880 34.473 351 216 10 2 346 6 348 5.65e-61 200
MS.gene85171.t1 MTR_1g024890 35.417 336 205 8 15 346 19 346 8.31e-61 199
MS.gene85171.t1 MTR_2g033920 34.675 323 203 6 29 347 33 351 1.07e-60 199
MS.gene85171.t1 MTR_1g079530 35.976 328 193 8 31 353 29 344 2.30e-59 196
MS.gene85171.t1 MTR_3g024510 35.000 340 207 9 10 342 15 347 5.46e-59 195
MS.gene85171.t1 MTR_4g122200 33.618 351 208 8 9 349 18 353 1.11e-57 191
MS.gene85171.t1 MTR_3g052490 34.758 351 209 11 5 345 7 347 3.54e-57 190
MS.gene85171.t1 MTR_5g009100 32.372 312 204 6 34 342 49 356 3.64e-56 188
MS.gene85171.t1 MTR_7g008060 33.043 345 204 9 9 346 10 334 2.35e-55 185
MS.gene85171.t1 MTR_4g036375 53.293 167 78 0 12 178 11 177 6.34e-55 179
MS.gene85171.t1 MTR_3g052580 33.048 351 217 10 3 345 2 342 2.19e-54 183
MS.gene85171.t1 MTR_5g093090 31.909 351 210 10 10 347 11 345 3.59e-54 182
MS.gene85171.t1 MTR_3g005650 33.828 337 206 9 10 342 12 335 4.55e-54 182
MS.gene85171.t1 MTR_3g052580 33.048 351 217 10 3 345 1 341 4.89e-54 183
MS.gene85171.t1 MTR_5g078210 34.713 314 192 8 35 343 29 334 7.45e-54 181
MS.gene85171.t1 MTR_2g044100 34.545 330 205 6 31 354 43 367 3.04e-53 181
MS.gene85171.t1 MTR_8g074570 31.054 351 231 4 9 353 16 361 2.03e-52 177
MS.gene85171.t1 MTR_3g052480 33.523 352 213 12 5 345 8 349 4.90e-52 177
MS.gene85171.t1 MTR_3g005660 34.154 325 198 9 29 344 34 351 1.15e-51 176
MS.gene85171.t1 MTR_2g033930 30.938 320 215 5 30 347 31 346 5.55e-50 171
MS.gene85171.t1 MTR_3g098270 32.704 318 204 6 31 342 34 347 2.57e-49 170
MS.gene85171.t1 MTR_8g031420 30.508 354 225 10 9 354 13 353 1.19e-48 167
MS.gene85171.t1 MTR_4g108690 34.169 319 199 9 35 348 31 343 1.47e-48 167
MS.gene85171.t1 MTR_8g022810 31.761 318 205 7 31 342 41 352 1.52e-48 167
MS.gene85171.t1 MTR_3g435540 34.483 319 198 9 35 348 27 339 3.94e-48 166
MS.gene85171.t1 MTR_4g035353 31.661 319 207 8 29 342 29 341 1.25e-47 165
MS.gene85171.t1 MTR_2g017875 34.056 323 191 10 27 342 30 337 1.71e-47 164
MS.gene85171.t1 MTR_2g033920 35.714 266 164 5 29 290 33 295 9.98e-47 161
MS.gene85171.t1 MTR_8g074580 29.114 395 222 8 9 353 22 408 1.58e-46 163
MS.gene85171.t1 MTR_8g031430 30.707 368 219 13 7 354 4 355 2.12e-46 162
MS.gene85171.t1 MTR_6g049230 57.724 123 51 1 205 327 73 194 3.72e-46 156
MS.gene85171.t1 MTR_8g022790 31.861 317 197 8 31 342 37 339 4.18e-46 161
MS.gene85171.t1 MTR_8g087870 32.754 345 212 9 3 343 1 329 5.26e-46 160
MS.gene85171.t1 MTR_8g031390 29.268 369 222 11 7 354 4 354 5.89e-46 161
MS.gene85171.t1 MTR_0009s0250 34.125 337 195 14 22 350 24 341 3.12e-44 155
MS.gene85171.t1 MTR_1g030268 33.918 342 186 12 30 345 39 366 5.49e-44 156
MS.gene85171.t1 MTR_3g021460 31.831 355 203 12 3 343 1 330 3.36e-43 153
MS.gene85171.t1 MTR_2g017925 33.542 319 190 11 29 342 31 332 1.52e-42 152
MS.gene85171.t1 MTR_3g023220 33.019 318 191 10 29 342 31 330 2.20e-42 151
MS.gene85171.t1 MTR_4g036385 54.839 124 55 1 230 353 13 135 2.28e-42 144
MS.gene85171.t1 MTR_8g074560 31.124 347 218 13 12 345 11 349 3.39e-42 150
MS.gene85171.t1 MTR_2g017965 32.184 348 203 14 10 342 8 337 3.86e-42 151
MS.gene85171.t1 MTR_8g031400 29.042 334 212 10 31 354 37 355 5.15e-42 150
MS.gene85171.t1 MTR_4g056220 52.713 129 60 1 225 353 61 188 5.43e-42 145
MS.gene85171.t1 MTR_2g017955 32.326 331 204 10 29 353 31 347 1.58e-41 149
MS.gene85171.t1 MTR_1g030275 32.653 343 191 12 30 346 38 366 4.17e-40 145
MS.gene85171.t1 MTR_5g093090 32.526 289 178 8 10 290 11 290 6.77e-40 143
MS.gene85171.t1 MTR_5g078210 33.716 261 163 7 35 290 29 284 3.94e-39 142
MS.gene85171.t1 MTR_8g031390 30.255 314 183 10 7 302 4 299 5.24e-39 141
MS.gene85171.t1 MTR_2g461580 30.675 326 195 10 27 343 27 330 4.85e-38 139
MS.gene85171.t1 MTR_2g017915 31.579 323 184 9 29 347 31 320 1.23e-37 138
MS.gene85171.t1 MTR_1g030220 31.045 335 197 10 31 341 40 364 1.51e-37 139
MS.gene85171.t1 MTR_5g074210 46.154 143 74 3 204 345 64 204 2.44e-37 134
MS.gene85171.t1 MTR_7g087190 30.000 350 207 11 30 351 42 381 1.86e-36 136
MS.gene85171.t1 MTR_1g079590 40.449 178 100 4 31 204 31 206 4.53e-36 130
MS.gene85171.t1 MTR_1g030230 30.117 342 201 12 30 345 31 360 2.06e-35 133
MS.gene85171.t1 MTR_5g087690 27.536 345 199 11 22 344 41 356 1.16e-34 131
MS.gene85171.t1 MTR_6g049220 39.665 179 63 1 26 204 25 158 2.07e-34 125
MS.gene85171.t1 MTR_1g030340 31.233 365 209 14 9 345 21 371 2.66e-34 130
MS.gene85171.t1 MTR_2g015580 28.739 341 204 11 31 346 47 373 1.56e-33 128
MS.gene85171.t1 MTR_8g089805 28.329 353 198 12 30 346 39 372 6.28e-33 126
MS.gene85171.t1 MTR_8g022810 28.349 321 165 9 31 345 41 302 6.50e-33 125
MS.gene85171.t1 MTR_1g030268 35.125 279 149 11 30 290 39 303 3.53e-32 123
MS.gene85171.t1 MTR_2g043980 31.283 374 193 17 3 347 7 345 1.36e-31 122
MS.gene85171.t1 MTR_3g463960 27.596 337 216 11 31 347 44 372 2.27e-31 122
MS.gene85171.t1 MTR_3g463950 27.596 337 216 11 31 347 44 372 2.27e-31 122
MS.gene85171.t1 MTR_3g463970 27.596 337 216 11 31 347 44 372 2.27e-31 122
MS.gene85171.t1 MTR_3g463940 27.596 337 216 11 31 347 44 372 2.27e-31 122
MS.gene85171.t1 MTR_7g033150 26.611 357 209 13 31 351 35 374 9.77e-31 120
MS.gene85171.t1 MTR_3g463930 27.822 381 224 15 9 347 8 379 1.34e-30 120
MS.gene85171.t1 MTR_8g028160 28.367 349 210 12 31 351 36 372 1.42e-30 120
MS.gene85171.t1 MTR_7g033165 30.347 346 198 13 30 346 32 363 1.56e-30 120
MS.gene85171.t1 MTR_2g079090 27.747 364 223 14 3 347 1 343 5.16e-29 115
MS.gene85171.t1 MTR_1g030265 30.526 285 165 9 89 345 54 333 9.65e-29 114
MS.gene85171.t1 MTR_0029s0050 27.747 364 223 14 3 347 1 343 1.04e-28 114
MS.gene85171.t1 MTR_2g015630 27.485 342 201 13 36 347 36 360 1.04e-28 115
MS.gene85171.t1 MTR_7g111780 28.406 345 200 14 30 351 34 354 1.30e-28 114
MS.gene85171.t1 MTR_2g015590 28.610 367 220 15 6 347 10 359 2.33e-28 114
MS.gene85171.t1 MTR_7g116870 26.158 367 235 11 3 346 7 360 3.10e-28 113
MS.gene85171.t1 MTR_7g113860 29.275 345 203 14 30 346 28 359 3.70e-28 113
MS.gene85171.t1 MTR_0029s0100 27.747 364 223 14 3 347 1 343 6.91e-28 112
MS.gene85171.t1 MTR_2g018015 37.566 189 112 5 29 213 34 220 7.91e-28 110
MS.gene85171.t1 MTR_7g033155 26.027 365 212 12 31 351 38 388 8.98e-28 112
MS.gene85171.t1 MTR_0127s0040 31.364 220 139 7 129 342 4 217 1.10e-27 108
MS.gene85171.t1 MTR_2g079080 27.198 364 225 14 3 347 1 343 1.46e-27 111
MS.gene85171.t1 MTR_5g093090 36.842 190 106 7 10 191 11 194 1.72e-27 107
MS.gene85171.t1 MTR_6g007100 27.326 344 218 12 23 351 25 351 2.59e-27 110
MS.gene85171.t1 MTR_3g069780 27.397 365 235 13 3 347 1 355 3.37e-27 110
MS.gene85171.t1 MTR_2g087292 28.571 329 141 9 29 350 31 272 4.88e-27 108
MS.gene85171.t1 MTR_7g113860 27.326 344 211 13 30 346 34 365 1.07e-26 109
MS.gene85171.t1 MTR_1g082390 27.195 353 209 11 30 351 30 365 1.55e-26 108
MS.gene85171.t1 MTR_6g007095 27.794 349 211 11 28 351 38 370 4.34e-26 109
MS.gene85171.t1 MTR_6g007095 27.679 336 208 13 34 351 368 686 4.65e-24 103
MS.gene85171.t1 MTR_3g438030 27.123 365 236 13 3 347 1 355 1.04e-25 106
MS.gene85171.t1 MTR_6g007090 27.405 343 206 14 30 346 38 363 5.40e-24 101
MS.gene85171.t1 MTR_3g448360 25.886 367 238 12 3 347 1 355 3.22e-23 99.8
MS.gene85171.t1 MTR_8g089805 26.027 292 166 9 91 346 27 304 8.68e-23 97.4
MS.gene85171.t1 MTR_2g015650 29.155 343 212 14 31 352 31 363 1.34e-22 97.8
MS.gene85171.t1 MTR_4g104240 24.561 342 212 10 32 347 40 361 1.81e-22 97.4
MS.gene85171.t1 MTR_7g111780 27.037 270 162 8 101 351 2 255 4.81e-21 91.7
MS.gene85171.t1 MTR_3g069520 25.469 373 230 13 3 347 1 353 1.46e-20 92.0
MS.gene85171.t1 MTR_8g038680 26.012 346 226 10 28 351 25 362 2.09e-20 91.7
MS.gene85171.t1 MTR_7g104220 26.163 344 224 13 11 345 22 344 1.33e-19 89.0
MS.gene85171.t1 MTR_5g084880 39.048 105 64 0 187 291 9 113 2.96e-19 83.6
MS.gene85171.t1 MTR_2g015670 26.393 341 210 12 31 352 31 349 3.11e-19 88.2
MS.gene85171.t1 MTR_7g033165 30.035 283 162 12 30 290 32 300 1.31e-18 85.5
MS.gene85171.t1 MTR_7g113860 27.778 270 161 9 104 346 29 291 2.03e-18 85.1
MS.gene85171.t1 MTR_1g060500 27.410 332 210 12 32 350 41 354 2.54e-18 85.5
MS.gene85171.t1 MTR_8g062580 37.719 114 69 2 229 342 66 177 2.89e-18 83.6
MS.gene85171.t1 MTR_2g017925 29.358 218 138 7 128 342 25 229 3.37e-18 83.6
MS.gene85171.t1 MTR_1g092760 27.389 314 195 15 32 335 40 330 1.67e-17 82.8
MS.gene85171.t1 MTR_1g092750 25.153 326 214 14 25 341 34 338 1.80e-17 82.8
MS.gene85171.t1 MTR_1g060490 25.000 336 211 12 32 353 38 346 5.78e-17 81.3
MS.gene85171.t1 MTR_2g043990 28.344 314 153 15 3 289 69 337 6.39e-17 81.3
MS.gene85171.t1 MTR_2g015590 26.774 310 182 13 6 290 10 299 2.48e-16 79.3
MS.gene85171.t1 MTR_1g092690 24.074 324 210 11 23 335 43 341 8.43e-16 78.2
MS.gene85171.t1 MTR_4g056290 52.542 59 27 1 293 351 47 104 1.43e-14 70.1
MS.gene85171.t1 MTR_6g034400 31.452 124 85 0 81 204 1 124 3.84e-14 68.9
MS.gene85171.t1 MTR_8g012540 23.871 310 204 8 12 301 9 306 8.78e-14 72.0
MS.gene85171.t1 MTR_1g092740 25.000 316 200 13 32 335 39 329 1.35e-13 71.2
MS.gene85171.t1 MTR_5g062890 58.929 56 22 1 26 80 23 78 3.00e-13 65.5
MS.gene85171.t1 MTR_5g093550 55.172 58 24 2 288 345 77 132 1.95e-12 64.7
MS.gene85171.t1 MTR_2g017895 22.305 269 174 8 79 342 5 243 3.44e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85171.t1 AT3G16370 76.758 327 76 0 28 354 27 353 0.0 528
MS.gene85171.t1 AT5G22810 59.429 350 136 3 9 353 10 358 8.35e-151 429
MS.gene85171.t1 AT5G03810 58.310 355 143 4 1 353 1 352 2.10e-148 422
MS.gene85171.t1 AT5G03820 58.708 356 141 4 1 353 4 356 5.73e-148 422
MS.gene85171.t1 AT5G03820 58.939 358 137 5 1 353 32 384 4.70e-147 421
MS.gene85171.t1 AT3G53100 53.681 326 150 1 28 353 26 350 3.60e-134 387
MS.gene85171.t1 AT2G04570 44.654 318 175 1 29 346 26 342 1.37e-98 296
MS.gene85171.t1 AT5G42170 43.789 322 175 3 26 346 45 361 9.85e-96 289
MS.gene85171.t1 AT2G42990 41.875 320 185 1 29 348 26 344 3.36e-95 287
MS.gene85171.t1 AT4G26790 41.304 322 188 1 30 351 28 348 1.15e-92 281
MS.gene85171.t1 AT4G26790 41.304 322 188 1 30 351 28 348 1.15e-92 281
MS.gene85171.t1 AT3G14820 42.236 322 181 3 27 348 28 344 3.62e-91 277
MS.gene85171.t1 AT1G59406 40.909 352 201 5 1 351 1 346 1.38e-90 275
MS.gene85171.t1 AT1G59030 40.909 352 201 5 1 351 1 346 1.38e-90 275
MS.gene85171.t1 AT1G58725 40.909 352 201 5 1 351 1 346 1.38e-90 275
MS.gene85171.t1 AT1G20120 40.923 325 191 1 26 350 73 396 2.23e-89 274
MS.gene85171.t1 AT5G45960 42.949 312 171 4 29 335 45 354 3.27e-87 268
MS.gene85171.t1 AT2G24560 41.692 331 186 6 22 348 25 352 3.99e-87 267
MS.gene85171.t1 AT1G75900 40.432 324 185 3 28 348 40 358 8.97e-87 266
MS.gene85171.t1 AT1G75880 38.905 347 204 2 9 348 23 368 1.31e-86 266
MS.gene85171.t1 AT2G30220 40.793 353 188 9 10 348 9 354 2.43e-86 265
MS.gene85171.t1 AT2G30310 41.358 324 177 6 21 337 24 341 3.99e-86 264
MS.gene85171.t1 AT1G58430 41.104 326 187 5 23 345 27 350 7.22e-86 264
MS.gene85171.t1 AT1G06990 38.889 324 194 3 27 348 33 354 2.04e-85 263
MS.gene85171.t1 AT1G75880 39.080 348 203 3 9 348 23 369 2.61e-85 263
MS.gene85171.t1 AT2G31540 40.541 333 183 7 21 345 25 350 3.11e-85 262
MS.gene85171.t1 AT1G58520 40.729 329 182 5 26 353 25 341 6.37e-85 261
MS.gene85171.t1 AT1G58525 40.729 329 182 5 26 353 25 341 6.37e-85 261
MS.gene85171.t1 AT1G75890 40.312 320 189 2 30 348 46 364 2.59e-84 260
MS.gene85171.t1 AT1G75890 39.815 324 193 2 26 348 71 393 5.21e-84 260
MS.gene85171.t1 AT2G40250 36.538 364 217 5 1 353 1 361 2.71e-81 252
MS.gene85171.t1 AT5G45950 40.881 318 181 4 29 346 38 348 3.18e-81 252
MS.gene85171.t1 AT1G75890 38.739 333 189 3 30 348 46 377 3.37e-81 252
MS.gene85171.t1 AT5G63170 40.836 311 167 4 29 337 26 321 2.42e-77 241
MS.gene85171.t1 AT3G43570 38.037 326 169 4 26 351 25 317 2.19e-76 238
MS.gene85171.t1 AT1G20132 35.780 327 205 3 26 350 56 379 1.43e-72 230
MS.gene85171.t1 AT1G20130 35.965 342 199 5 25 353 178 512 1.15e-70 229
MS.gene85171.t1 AT1G20130 35.965 342 199 5 25 353 198 532 1.37e-70 229
MS.gene85171.t1 AT1G75920 35.988 339 203 3 12 348 11 337 1.21e-68 219
MS.gene85171.t1 AT1G23500 39.412 340 185 4 9 347 19 338 1.36e-67 216
MS.gene85171.t1 AT1G73610 34.844 353 208 5 3 348 1 338 1.47e-66 214
MS.gene85171.t1 AT2G24560 39.711 277 162 4 22 294 25 300 2.42e-65 209
MS.gene85171.t1 AT1G75920 34.746 354 202 4 12 348 6 347 3.78e-65 210
MS.gene85171.t1 AT3G43550 39.850 266 155 3 26 290 25 286 1.92e-64 206
MS.gene85171.t1 AT1G29670 36.950 341 196 11 11 342 10 340 3.36e-64 208
MS.gene85171.t1 AT1G29670 36.950 341 196 11 11 342 78 408 3.11e-63 207
MS.gene85171.t1 AT3G04290 36.335 322 192 8 31 346 29 343 8.05e-63 204
MS.gene85171.t1 AT1G20135 34.954 329 198 5 10 337 9 322 9.63e-62 201
MS.gene85171.t1 AT1G75910 35.093 322 195 3 30 348 27 337 1.04e-61 201
MS.gene85171.t1 AT2G23540 34.254 362 219 7 9 353 17 376 1.67e-61 202
MS.gene85171.t1 AT4G28780 34.557 327 205 7 24 346 24 345 1.02e-60 199
MS.gene85171.t1 AT5G33370 35.404 322 195 9 31 346 30 344 1.56e-59 196
MS.gene85171.t1 AT5G15720 36.443 343 188 10 16 342 14 342 2.55e-59 196
MS.gene85171.t1 AT3G50400 34.270 356 217 9 6 346 3 356 6.55e-59 195
MS.gene85171.t1 AT1G29660 34.294 347 217 8 1 342 1 341 1.41e-58 194
MS.gene85171.t1 AT5G18430 33.125 320 207 5 31 346 28 344 7.13e-57 189
MS.gene85171.t1 AT1G75930 34.848 330 198 5 23 348 21 337 8.31e-57 188
MS.gene85171.t1 AT4G18970 34.783 322 199 7 26 342 23 338 1.37e-56 188
MS.gene85171.t1 AT4G18970 34.783 322 199 7 26 342 23 338 5.78e-56 188
MS.gene85171.t1 AT1G75920 32.153 339 185 4 12 348 11 306 2.40e-55 184
MS.gene85171.t1 AT4G10950 30.599 317 215 4 29 343 69 382 3.20e-55 186
MS.gene85171.t1 AT1G75920 34.680 297 181 2 54 348 24 309 5.44e-55 183
MS.gene85171.t1 AT5G45670 33.431 341 217 7 6 341 3 338 7.24e-55 184
MS.gene85171.t1 AT5G41890 34.545 330 193 9 35 347 35 358 1.78e-53 181
MS.gene85171.t1 AT5G37690 33.651 315 198 7 35 345 31 338 6.21e-53 179
MS.gene85171.t1 AT1G53920 33.333 330 207 8 26 349 43 365 1.48e-52 178
MS.gene85171.t1 AT4G10950 30.284 317 212 5 29 343 69 378 2.34e-52 178
MS.gene85171.t1 AT1G71250 33.123 317 205 5 29 342 39 351 2.63e-52 177
MS.gene85171.t1 AT1G33811 32.295 353 221 10 5 344 4 351 5.87e-52 176
MS.gene85171.t1 AT1G71691 33.951 324 195 9 26 342 50 361 2.63e-50 172
MS.gene85171.t1 AT2G31550 38.605 215 118 6 138 345 2 209 2.15e-49 165
MS.gene85171.t1 AT5G08460 30.205 341 226 7 9 342 28 363 3.89e-49 169
MS.gene85171.t1 AT2G19010 33.131 329 193 11 30 351 29 337 8.61e-49 167
MS.gene85171.t1 AT2G19050 34.268 321 188 10 29 344 29 331 1.01e-48 167
MS.gene85171.t1 AT5G37690 33.016 315 192 8 35 345 31 330 1.66e-48 167
MS.gene85171.t1 AT2G19010 33.131 329 193 11 30 351 59 367 1.81e-48 167
MS.gene85171.t1 AT1G71120 32.317 328 206 8 23 345 23 339 1.11e-47 165
MS.gene85171.t1 AT2G19060 32.938 337 197 12 28 353 27 345 3.11e-47 164
MS.gene85171.t1 AT5G33370 35.714 266 160 7 31 290 30 290 4.30e-46 160
MS.gene85171.t1 AT1G74460 32.754 345 218 10 8 348 5 339 7.63e-46 160
MS.gene85171.t1 AT5G15720 36.770 291 156 9 16 290 14 292 1.48e-45 158
MS.gene85171.t1 AT5G55050 31.707 328 208 10 29 346 37 358 1.50e-45 160
MS.gene85171.t1 AT3G14225 28.963 328 221 6 31 349 37 361 5.15e-44 156
MS.gene85171.t1 AT3G14225 28.349 321 221 5 31 345 37 354 5.89e-43 153
MS.gene85171.t1 AT5G40990 29.595 321 217 5 31 345 37 354 1.39e-42 152
MS.gene85171.t1 AT1G53940 28.852 357 236 7 4 345 3 356 3.64e-42 151
MS.gene85171.t1 AT4G30140 29.653 317 204 9 30 344 32 331 4.68e-41 147
MS.gene85171.t1 AT1G53990 28.775 351 222 8 9 345 9 345 5.15e-41 147
MS.gene85171.t1 AT4G16230 38.537 205 120 3 29 229 28 230 1.39e-40 143
MS.gene85171.t1 AT1G28610 31.233 365 211 12 8 347 9 358 5.05e-37 137
MS.gene85171.t1 AT5G14450 29.457 387 216 16 1 346 1 371 2.11e-36 136
MS.gene85171.t1 AT2G19050 33.080 263 160 7 29 289 29 277 3.07e-36 133
MS.gene85171.t1 AT5G15720 32.331 266 154 7 92 342 57 311 4.25e-36 134
MS.gene85171.t1 AT2G27360 31.378 341 197 12 31 346 33 361 5.76e-36 135
MS.gene85171.t1 AT1G71691 33.088 272 165 8 26 290 50 311 8.41e-36 132
MS.gene85171.t1 AT1G28580 30.473 338 203 12 31 346 37 364 3.38e-34 130
MS.gene85171.t1 AT1G28650 30.564 337 204 12 31 346 37 364 1.86e-33 128
MS.gene85171.t1 AT1G28640 29.080 337 209 12 31 346 35 362 3.48e-33 127
MS.gene85171.t1 AT1G28570 29.552 335 212 11 31 347 34 362 4.23e-33 127
MS.gene85171.t1 AT1G28600 29.121 364 218 14 10 346 7 357 1.86e-32 125
MS.gene85171.t1 AT1G31550 30.321 343 198 13 31 347 36 363 1.94e-32 125
MS.gene85171.t1 AT1G28590 29.532 342 203 12 31 347 36 364 1.20e-30 120
MS.gene85171.t1 AT4G01130 27.321 377 235 15 3 351 5 370 1.30e-30 120
MS.gene85171.t1 AT1G28670 30.178 338 205 12 31 346 35 363 1.95e-30 119
MS.gene85171.t1 AT1G71691 29.921 254 167 7 93 342 14 260 2.50e-30 117
MS.gene85171.t1 AT3G48460 26.471 340 210 11 32 347 39 362 2.66e-30 119
MS.gene85171.t1 AT1G53940 28.523 298 199 6 4 290 3 297 3.34e-30 117
MS.gene85171.t1 AT1G54790 27.246 345 210 12 30 346 31 362 4.54e-30 119
MS.gene85171.t1 AT1G67830 28.116 345 207 12 30 345 29 361 6.04e-30 118
MS.gene85171.t1 AT3G05180 28.024 339 207 10 30 342 35 362 9.69e-30 117
MS.gene85171.t1 AT1G09390 27.692 325 216 9 28 342 34 349 1.01e-28 114
MS.gene85171.t1 AT1G56670 26.506 332 213 10 27 342 36 352 1.08e-28 114
MS.gene85171.t1 AT2G03980 27.761 335 207 11 30 348 42 357 1.17e-28 114
MS.gene85171.t1 AT2G03980 27.761 335 207 11 30 348 42 357 1.17e-28 114
MS.gene85171.t1 AT2G03980 27.761 335 207 11 30 348 42 357 1.17e-28 114
MS.gene85171.t1 AT2G03980 27.761 335 207 11 30 348 42 357 1.17e-28 114
MS.gene85171.t1 AT1G28660 28.487 337 211 11 31 346 35 362 1.98e-28 114
MS.gene85171.t1 AT1G31550 29.532 342 199 14 31 347 36 360 2.03e-28 114
MS.gene85171.t1 AT3G14220 26.791 321 209 10 30 343 31 332 3.20e-27 110
MS.gene85171.t1 AT3G62280 26.946 334 209 11 30 346 35 350 4.11e-27 110
MS.gene85171.t1 AT1G28660 28.487 337 210 12 31 346 35 361 4.54e-27 110
MS.gene85171.t1 AT1G54030 27.331 311 196 10 32 338 53 337 8.47e-26 107
MS.gene85171.t1 AT3G26430 29.499 339 196 14 30 338 30 355 1.45e-25 106
MS.gene85171.t1 AT1G54790 24.866 374 240 12 1 346 1 361 1.36e-24 103
MS.gene85171.t1 AT1G54020 26.480 321 207 10 29 342 29 327 1.71e-24 103
MS.gene85171.t1 AT1G54010 25.150 334 222 9 29 353 32 346 2.32e-24 103
MS.gene85171.t1 AT3G27950 27.168 346 212 11 30 351 31 360 2.68e-24 102
MS.gene85171.t1 AT5G45910 27.807 374 228 16 3 346 1 362 5.81e-24 101
MS.gene85171.t1 AT2G04020 33.168 202 122 6 30 226 42 235 1.24e-21 93.2
MS.gene85171.t1 AT1G54000 25.076 331 220 10 23 345 28 338 1.32e-21 95.1
MS.gene85171.t1 AT2G04020 33.168 202 122 6 30 226 42 235 2.30e-21 93.6
MS.gene85171.t1 AT5G03610 26.023 342 218 13 21 347 29 350 8.43e-21 92.4
MS.gene85171.t1 AT1G28580 27.817 284 177 10 82 346 9 283 1.10e-20 91.7
MS.gene85171.t1 AT3G09930 26.984 315 200 11 32 335 40 335 7.96e-20 89.7
MS.gene85171.t1 AT3G09930 26.984 315 200 11 32 335 40 335 7.96e-20 89.7
MS.gene85171.t1 AT1G54790 23.250 400 240 13 1 346 1 387 1.35e-19 89.7
MS.gene85171.t1 AT4G01130 26.573 286 177 11 95 351 3 284 1.52e-19 88.2
MS.gene85171.t1 AT4G01130 26.230 305 197 12 3 290 5 298 2.78e-19 87.8
MS.gene85171.t1 AT3G14210 26.748 329 203 13 31 345 36 340 6.13e-19 87.4
MS.gene85171.t1 AT4G16220 48.182 110 50 3 8 117 12 114 4.17e-18 83.2
MS.gene85171.t1 AT5G03600 26.420 352 204 13 3 335 21 336 5.94e-18 84.3
MS.gene85171.t1 AT5G03600 26.190 336 193 13 29 345 12 311 1.14e-17 83.2
MS.gene85171.t1 AT1G56670 26.354 277 176 9 27 290 36 297 2.90e-17 81.6
MS.gene85171.t1 AT1G54030 28.185 259 154 9 32 283 53 286 1.46e-16 79.7
MS.gene85171.t1 AT1G28570 26.238 202 135 6 157 347 1 199 8.06e-16 76.3
MS.gene85171.t1 AT1G28570 26.238 202 135 6 157 347 92 290 2.46e-15 76.3
MS.gene85171.t1 AT5G03980 25.316 237 152 8 130 353 94 318 4.77e-15 75.5
MS.gene85171.t1 AT1G54020 25.397 189 137 3 158 345 10 195 1.83e-13 69.7
MS.gene85171.t1 AT1G54020 24.138 261 174 7 86 342 1 241 2.42e-13 70.1
MS.gene85171.t1 AT1G54020 24.138 261 174 7 86 342 1 241 2.42e-13 70.1
MS.gene85171.t1 AT1G54020 24.138 261 174 7 86 342 1 241 2.42e-13 70.1
MS.gene85171.t1 AT4G16233 29.630 108 75 1 239 346 6 112 6.10e-13 65.9
MS.gene85171.t1 AT1G28610 33.133 166 86 7 29 179 29 184 2.52e-12 66.6
MS.gene85171.t1 AT1G28600 32.961 179 93 10 11 172 8 176 8.74e-12 64.7

Find 69 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCAATCCCCTTCAAAATT+TGG 0.113263 2.4:-3869747 MS.gene85171:intron
AACATAGGACTTGTATAAAT+TGG 0.146657 2.4:-3869988 MS.gene85171:intron
AAAACCTCCCAGTGGGTTTA+TGG 0.171244 2.4:+3870811 None:intergenic
AAGGATTGACATAATAGTTT+TGG 0.253181 2.4:+3870229 None:intergenic
GTGACAACTTTGTTGATTAA+AGG 0.259570 2.4:+3870210 None:intergenic
TAAGACCAGGAAGTTGCTTT+TGG 0.276088 2.4:+3869811 None:intergenic
TTGTGCATCATTGTTGATTC+TGG 0.278755 2.4:+3869872 None:intergenic
AAAGCTAACTATCCTCCTTA+TGG 0.312317 2.4:-3870849 MS.gene85171:CDS
AGGAAAGGCTGCTGTGGAAC+TGG 0.322949 2.4:-3869615 MS.gene85171:CDS
ATGCAACTCAGTATGTGTTT+TGG 0.323360 2.4:-3869536 MS.gene85171:CDS
CCTGCTACAAGGACTTTGTT+TGG 0.340385 2.4:-3869918 MS.gene85171:CDS
CAAGGTAGCTGGAAGTAAAA+AGG 0.359520 2.4:-3870310 MS.gene85171:CDS
GGCATAAGCCTTATCGGTTA+AGG 0.371190 2.4:-3869453 None:intergenic
GAACAAGGCATAAGCCTTAT+CGG 0.374261 2.4:-3869459 MS.gene85171:CDS
AAGGCAGCATCAATTATTAA+AGG 0.375056 2.4:-3870291 MS.gene85171:CDS
TCACCAAACGTCACGATTGC+CGG 0.392033 2.4:+3870918 None:intergenic
ACATAGGACTTGTATAAATT+GGG 0.401221 2.4:-3869987 MS.gene85171:intron
AAACTCCAAAAGCAACTTCC+TGG 0.409834 2.4:-3869816 MS.gene85171:CDS
TGGTGACTCTGCTGTGGATG+TGG 0.414876 2.4:-3870901 MS.gene85171:CDS
CAAAATTTGCTCCAATAAGA+AGG 0.415639 2.4:+3870509 None:intergenic
AAATTAGCTACTGATATTAC+TGG 0.418320 2.4:-3870780 MS.gene85171:intron
GGTGACTCTGCTGTGGATGT+GGG 0.428006 2.4:-3870900 MS.gene85171:CDS
GTTCCGGCAATCGTGACGTT+TGG 0.433443 2.4:-3870921 MS.gene85171:CDS
TATCTTAGCCCTCAAGCAAC+AGG 0.436881 2.4:-3870538 MS.gene85171:CDS
TTGTTTGGATTCCATGAGAA+AGG 0.448046 2.4:-3869903 MS.gene85171:CDS
GTTGCATTAGAACAGGTTCC+TGG 0.453335 2.4:+3869552 None:intergenic
CACTACTTCCACCACTCAAT+AGG 0.457776 2.4:+3870259 None:intergenic
CTACCTTGGAAAGCTTACTT+TGG 0.474075 2.4:+3870325 None:intergenic
CTAACAAAGTCTCTTCCATA+AGG 0.478982 2.4:+3870834 None:intergenic
ATACTGAGTTGCATTAGAAC+AGG 0.482835 2.4:+3869545 None:intergenic
TGCATCTGGTTATGATGAAA+AGG 0.486563 2.4:-3870479 MS.gene85171:CDS
AGTGACTTCACTACCACCAT+TGG 0.497426 2.4:-3869949 MS.gene85171:CDS
AGTAAGCTTTCCAAGGTAGC+TGG 0.499862 2.4:-3870321 MS.gene85171:CDS
TGGTGACACAACCTTTCTCA+TGG 0.505021 2.4:+3869892 None:intergenic
ACAAGATGATACCGTTGTTC+CGG 0.509338 2.4:-3870937 MS.gene85171:CDS
GGAAAGGCTGCTGTGGAACT+GGG 0.509378 2.4:-3869614 MS.gene85171:CDS
AGGTATGCAGAATATTGATC+AGG 0.511148 2.4:+3870186 None:intergenic
CCAAACAAAGTCCTTGTAGC+AGG 0.515201 2.4:+3869918 None:intergenic
GTGACTTCACTACCACCATT+GGG 0.516685 2.4:-3869948 MS.gene85171:CDS
TCAATGCATCAGCTAGAACT+TGG 0.522397 2.4:+3869484 None:intergenic
GCATGAATCCTTAACCGATA+AGG 0.523528 2.4:+3869445 None:intergenic
GGTTAGCAGCTTCTGAAGGA+TGG 0.537602 2.4:+3869505 None:intergenic
GAGGCAAGGAAAGGCTGCTG+TGG 0.548555 2.4:-3869621 MS.gene85171:CDS
TTTGTTAGCCATAAACCCAC+TGG 0.558300 2.4:-3870819 MS.gene85171:CDS
CCATTGCAAAACCTCCCAGT+GGG 0.560224 2.4:+3870804 None:intergenic
GCTTGAGGGCTAAGATATGC+AGG 0.564871 2.4:+3870544 None:intergenic
TGGGTTGCCTACCTGCTACA+AGG 0.564941 2.4:-3869929 MS.gene85171:CDS
GTGACTCTGCTGTGGATGTG+GGG 0.573179 2.4:-3870899 MS.gene85171:CDS
GACGTTTGGTGACTCTGCTG+TGG 0.577397 2.4:-3870907 MS.gene85171:CDS
ACTTGGTTAGCAGCTTCTGA+AGG 0.578036 2.4:+3869501 None:intergenic
CGTCACGATTGCCGGAACAA+CGG 0.582020 2.4:+3870926 None:intergenic
GCATCAGTTAAAATATTACA+AGG 0.605021 2.4:-3870352 MS.gene85171:CDS
GATTGAACAAGTTCATAGAG+AGG 0.612422 2.4:+3869762 None:intergenic
ATACCAAAGTAAGCTTTCCA+AGG 0.615809 2.4:-3870328 MS.gene85171:CDS
ACAAAGTCTCTTCCATAAGG+AGG 0.615968 2.4:+3870837 None:intergenic
TTGTGCAATCAAAAGTCACC+AGG 0.626995 2.4:-3869570 MS.gene85171:CDS
GCAGGTAGGCAACCCAATGG+TGG 0.643466 2.4:+3869936 None:intergenic
AAGACAACAATCTTAAGACC+AGG 0.651941 2.4:+3869798 None:intergenic
TTGTTAGCCATAAACCCACT+GGG 0.652946 2.4:-3870818 MS.gene85171:CDS
AGAATCAACAATGATGCACA+AGG 0.655662 2.4:-3869870 MS.gene85171:CDS
GCTGATGCATTGATTGAACA+AGG 0.656923 2.4:-3869474 MS.gene85171:CDS
GCCATTGCAAAACCTCCCAG+TGG 0.660851 2.4:+3870803 None:intergenic
GTAGCAGGTAGGCAACCCAA+TGG 0.662304 2.4:+3869933 None:intergenic
ACAAAGTCCTTGTAGCAGGT+AGG 0.673754 2.4:+3869922 None:intergenic
GCATTGTACCTATTGAGTGG+TGG 0.691170 2.4:-3870267 MS.gene85171:CDS
ATTTAACAAGAAAATCAACT+CGG 0.691992 2.4:-3869847 MS.gene85171:CDS
AACTTGAGTATGTATCAACA+AGG 0.714639 2.4:+3870166 None:intergenic
TTAGCCATAAACCCACTGGG+AGG 0.727905 2.4:-3870815 MS.gene85171:CDS
GGTGCATTGTACCTATTGAG+TGG 0.748700 2.4:-3870270 MS.gene85171:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTACAATTATTATAAATATA+TGG + chr2.4:3870359-3870378 None:intergenic 10.0%
!! AAAAACAAAGCAACTTTAAA+TGG + chr2.4:3870451-3870470 None:intergenic 20.0%
!! ATTTAACAAGAAAATCAACT+CGG - chr2.4:3870613-3870632 MS.gene85171:intron 20.0%
! AAATTAGCTACTGATATTAC+TGG - chr2.4:3869680-3869699 MS.gene85171:intron 25.0%
! AACATAGGACTTGTATAAAT+TGG - chr2.4:3870472-3870491 MS.gene85171:CDS 25.0%
! ACATAGGACTTGTATAAATT+GGG - chr2.4:3870473-3870492 MS.gene85171:CDS 25.0%
! GCATCAGTTAAAATATTACA+AGG - chr2.4:3870108-3870127 MS.gene85171:intron 25.0%
!! AAATGTTAGTATTTTCTCCA+TGG - chr2.4:3869771-3869790 MS.gene85171:CDS 25.0%
!! AAGGATTGACATAATAGTTT+TGG + chr2.4:3870234-3870253 None:intergenic 25.0%
!! AATGTTAGTATTTTCTCCAT+GGG - chr2.4:3869772-3869791 MS.gene85171:CDS 25.0%
!! ATTGCTTACCAAATTTTGAA+GGG + chr2.4:3870724-3870743 None:intergenic 25.0%
!! TATTGCTTACCAAATTTTGA+AGG + chr2.4:3870725-3870744 None:intergenic 25.0%
!!! ATTAGTATTAGAAGTGTTGA+AGG + chr2.4:3869821-3869840 None:intergenic 25.0%
!!! GTTGCTTTGTTTTTTAACAT+AGG - chr2.4:3870457-3870476 MS.gene85171:intron 25.0%
!!! TACATACTCAAGTTTTGTTA+AGG - chr2.4:3870303-3870322 MS.gene85171:CDS 25.0%
AAATTGGGAGCTAGAAAAAT+TGG - chr2.4:3870488-3870507 MS.gene85171:CDS 30.0%
AACTTGAGTATGTATCAACA+AGG + chr2.4:3870297-3870316 None:intergenic 30.0%
AAGGCAGCATCAATTATTAA+AGG - chr2.4:3870169-3870188 MS.gene85171:CDS 30.0%
ACAGGAAAAAACCTTCTTAT+TGG - chr2.4:3869940-3869959 MS.gene85171:CDS 30.0%
TCTATCTTGTGACATTCAAT+AGG - chr2.4:3870809-3870828 MS.gene85171:CDS 30.0%
TTATTTGTAACGATGTGGTA+TGG + chr2.4:3870426-3870445 None:intergenic 30.0%
! CAAAATTTGCTCCAATAAGA+AGG + chr2.4:3869954-3869973 None:intergenic 30.0%
! GTGACAACTTTGTTGATTAA+AGG + chr2.4:3870253-3870272 None:intergenic 30.0%
! GTGTTTGCATTTGTGTTTTT+GGG - chr2.4:3869488-3869507 MS.gene85171:CDS 30.0%
! TGTGTTTGCATTTGTGTTTT+TGG - chr2.4:3869487-3869506 MS.gene85171:CDS 30.0%
!! AAGTGTTGAAGGTCTTAAAA+GGG + chr2.4:3869810-3869829 None:intergenic 30.0%
!! TGACTTTTGATTGCACAATA+AGG + chr2.4:3870888-3870907 None:intergenic 30.0%
!! TTGCTTACCAAATTTTGAAG+GGG + chr2.4:3870723-3870742 None:intergenic 30.0%
!!! TATTTTAACTGATGCGACAA+TGG + chr2.4:3870103-3870122 None:intergenic 30.0%
!!! TGGTTTTATTTGTAACGATG+TGG + chr2.4:3870431-3870450 None:intergenic 30.0%
AAAGCTAACTATCCTCCTTA+TGG - chr2.4:3869611-3869630 MS.gene85171:CDS 35.0%
AAGACAACAATCTTAAGACC+AGG + chr2.4:3870665-3870684 None:intergenic 35.0%
AGAATCAACAATGATGCACA+AGG - chr2.4:3870590-3870609 MS.gene85171:intron 35.0%
AGGTATGCAGAATATTGATC+AGG + chr2.4:3870277-3870296 None:intergenic 35.0%
ATACCAAAGTAAGCTTTCCA+AGG - chr2.4:3870132-3870151 MS.gene85171:intron 35.0%
ATACTGAGTTGCATTAGAAC+AGG + chr2.4:3870918-3870937 None:intergenic 35.0%
CTAACAAAGTCTCTTCCATA+AGG + chr2.4:3869629-3869648 None:intergenic 35.0%
GATTGAACAAGTTCATAGAG+AGG + chr2.4:3870701-3870720 None:intergenic 35.0%
GTTCAATCCCCTTCAAAATT+TGG - chr2.4:3870713-3870732 MS.gene85171:intron 35.0%
TGCATCTGGTTATGATGAAA+AGG - chr2.4:3869981-3870000 MS.gene85171:CDS 35.0%
TTGTTTGGATTCCATGAGAA+AGG - chr2.4:3870557-3870576 MS.gene85171:CDS 35.0%
! ATGCAACTCAGTATGTGTTT+TGG - chr2.4:3870924-3870943 MS.gene85171:CDS 35.0%
! CTTTTTGTAGCTGAAACACT+GGG - chr2.4:3869877-3869896 MS.gene85171:CDS 35.0%
! GTGACATTCAATAGGTTTTG+CGG - chr2.4:3870817-3870836 MS.gene85171:CDS 35.0%
! TCTTTTTGTAGCTGAAACAC+TGG - chr2.4:3869876-3869895 MS.gene85171:CDS 35.0%
! TGCAACTCAGTATGTGTTTT+GGG - chr2.4:3870925-3870944 MS.gene85171:CDS 35.0%
!! GAAGTGTTGAAGGTCTTAAA+AGG + chr2.4:3869811-3869830 None:intergenic 35.0%
!! TTGTGCATCATTGTTGATTC+TGG + chr2.4:3870591-3870610 None:intergenic 35.0%
!!! TGCATTTGTGTTTTTGGGAT+GGG - chr2.4:3869493-3869512 MS.gene85171:CDS 35.0%
!!! TTGCATTTGTGTTTTTGGGA+TGG - chr2.4:3869492-3869511 MS.gene85171:CDS 35.0%
AAACTCCAAAAGCAACTTCC+TGG - chr2.4:3870644-3870663 MS.gene85171:intron 40.0%
ACAAAGTCTCTTCCATAAGG+AGG + chr2.4:3869626-3869645 None:intergenic 40.0%
ACAAGATGATACCGTTGTTC+CGG - chr2.4:3869523-3869542 MS.gene85171:CDS 40.0%
CAAGGTAGCTGGAAGTAAAA+AGG - chr2.4:3870150-3870169 MS.gene85171:intron 40.0%
CTACCTTGGAAAGCTTACTT+TGG + chr2.4:3870138-3870157 None:intergenic 40.0%
TCAATGCATCAGCTAGAACT+TGG + chr2.4:3870979-3870998 None:intergenic 40.0%
TTCTCCATGGGTTTGAATCT+CGG - chr2.4:3869784-3869803 MS.gene85171:CDS 40.0%
TTGTGCAATCAAAAGTCACC+AGG - chr2.4:3870890-3870909 MS.gene85171:CDS 40.0%
TTGTTAGCCATAAACCCACT+GGG - chr2.4:3869642-3869661 MS.gene85171:intron 40.0%
TTTGTTAGCCATAAACCCAC+TGG - chr2.4:3869641-3869660 MS.gene85171:intron 40.0%
! AATTTTGCTTCAGCTGCATC+TGG - chr2.4:3869967-3869986 MS.gene85171:CDS 40.0%
! ACATTCAATAGGTTTTGCGG+AGG - chr2.4:3870820-3870839 MS.gene85171:CDS 40.0%
! CTTTTTACTTCCAGCTACCT+TGG + chr2.4:3870152-3870171 None:intergenic 40.0%
! GAACAAGGCATAAGCCTTAT+CGG - chr2.4:3871001-3871020 MS.gene85171:CDS 40.0%
!! GCTGATGCATTGATTGAACA+AGG - chr2.4:3870986-3871005 MS.gene85171:CDS 40.0%
!! TAAGACCAGGAAGTTGCTTT+TGG + chr2.4:3870652-3870671 None:intergenic 40.0%
!!! AGGTTTTTTCCTGTTGCTTG+AGG + chr2.4:3869934-3869953 None:intergenic 40.0%
!!! CATTTGTGTTTTTGGGATGG+GGG - chr2.4:3869495-3869514 MS.gene85171:CDS 40.0%
!!! GCATTTGTGTTTTTGGGATG+GGG - chr2.4:3869494-3869513 MS.gene85171:CDS 40.0%
!!! GGTTTTTTCCTGTTGCTTGA+GGG + chr2.4:3869933-3869952 None:intergenic 40.0%
ACAAAGTCCTTGTAGCAGGT+AGG + chr2.4:3870541-3870560 None:intergenic 45.0%
ACTTGGTTAGCAGCTTCTGA+AGG + chr2.4:3870962-3870981 None:intergenic 45.0%
AGTAAGCTTTCCAAGGTAGC+TGG - chr2.4:3870139-3870158 MS.gene85171:intron 45.0%
AGTGACTTCACTACCACCAT+TGG - chr2.4:3870511-3870530 MS.gene85171:CDS 45.0%
CACTACTTCCACCACTCAAT+AGG + chr2.4:3870204-3870223 None:intergenic 45.0%
CCAAACAAAGTCCTTGTAGC+AGG + chr2.4:3870545-3870564 None:intergenic 45.0%
CCTGCTACAAGGACTTTGTT+TGG - chr2.4:3870542-3870561 MS.gene85171:CDS 45.0%
GCATTGTACCTATTGAGTGG+TGG - chr2.4:3870193-3870212 MS.gene85171:CDS 45.0%
GGTGCATTGTACCTATTGAG+TGG - chr2.4:3870190-3870209 MS.gene85171:CDS 45.0%
GTGACTTCACTACCACCATT+GGG - chr2.4:3870512-3870531 MS.gene85171:CDS 45.0%
GTTGCATTAGAACAGGTTCC+TGG + chr2.4:3870911-3870930 None:intergenic 45.0%
TATCTTAGCCCTCAAGCAAC+AGG - chr2.4:3869922-3869941 MS.gene85171:CDS 45.0%
TGGTGACACAACCTTTCTCA+TGG + chr2.4:3870571-3870590 None:intergenic 45.0%
! AAAACCTCCCAGTGGGTTTA+TGG + chr2.4:3869652-3869671 None:intergenic 45.0%
!!! GTAATTTTTTTTTTTTTAAT+AGG - chr2.4:3869746-3869765 MS.gene85171:intron 5.0%
CCATTGCAAAACCTCCCAGT+GGG + chr2.4:3869659-3869678 None:intergenic 50.0%
GCTTGAGGGCTAAGATATGC+AGG + chr2.4:3869919-3869938 None:intergenic 50.0%
TCACCAAACGTCACGATTGC+CGG + chr2.4:3869545-3869564 None:intergenic 50.0%
TTAGCCATAAACCCACTGGG+AGG - chr2.4:3869645-3869664 MS.gene85171:intron 50.0%
! CAATAGGTTTTGCGGAGGCA+AGG - chr2.4:3870825-3870844 MS.gene85171:CDS 50.0%
! GGTTAGCAGCTTCTGAAGGA+TGG + chr2.4:3870958-3870977 None:intergenic 50.0%
AGGAAAGGCTGCTGTGGAAC+TGG - chr2.4:3870845-3870864 MS.gene85171:CDS 55.0%
AGGGCCGAGATTCAAACCCA+TGG + chr2.4:3869791-3869810 None:intergenic 55.0%
CGTCACGATTGCCGGAACAA+CGG + chr2.4:3869537-3869556 None:intergenic 55.0%
GCCATTGCAAAACCTCCCAG+TGG + chr2.4:3869660-3869679 None:intergenic 55.0%
GGAAAGGCTGCTGTGGAACT+GGG - chr2.4:3870846-3870865 MS.gene85171:CDS 55.0%
GGTGACTCTGCTGTGGATGT+GGG - chr2.4:3869560-3869579 MS.gene85171:CDS 55.0%
GTAGCAGGTAGGCAACCCAA+TGG + chr2.4:3870530-3870549 None:intergenic 55.0%
GTGACTCTGCTGTGGATGTG+GGG - chr2.4:3869561-3869580 MS.gene85171:CDS 55.0%
GTTCCGGCAATCGTGACGTT+TGG - chr2.4:3869539-3869558 MS.gene85171:CDS 55.0%
TGGGTTGCCTACCTGCTACA+AGG - chr2.4:3870531-3870550 MS.gene85171:CDS 55.0%
TGGTGACTCTGCTGTGGATG+TGG - chr2.4:3869559-3869578 MS.gene85171:CDS 55.0%
! CCCACTGGGAGGTTTTGCAA+TGG - chr2.4:3869656-3869675 MS.gene85171:intron 55.0%
! GACGTTTGGTGACTCTGCTG+TGG - chr2.4:3869553-3869572 MS.gene85171:CDS 55.0%
! GGTTTTGCGGAGGCAAGGAA+AGG - chr2.4:3870830-3870849 MS.gene85171:CDS 55.0%
GAGGCAAGGAAAGGCTGCTG+TGG - chr2.4:3870839-3870858 MS.gene85171:CDS 60.0%
GCAGGTAGGCAACCCAATGG+TGG + chr2.4:3870527-3870546 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 3869455 3871027 3869455 ID=MS.gene85171
chr2.4 mRNA 3869455 3871027 3869455 ID=MS.gene85171.t1;Parent=MS.gene85171
chr2.4 exon 3870781 3871027 3870781 ID=MS.gene85171.t1.exon1;Parent=MS.gene85171.t1
chr2.4 CDS 3870781 3871027 3870781 ID=cds.MS.gene85171.t1;Parent=MS.gene85171.t1
chr2.4 exon 3870465 3870595 3870465 ID=MS.gene85171.t1.exon2;Parent=MS.gene85171.t1
chr2.4 CDS 3870465 3870595 3870465 ID=cds.MS.gene85171.t1;Parent=MS.gene85171.t1
chr2.4 exon 3870158 3870391 3870158 ID=MS.gene85171.t1.exon3;Parent=MS.gene85171.t1
chr2.4 CDS 3870158 3870391 3870158 ID=cds.MS.gene85171.t1;Parent=MS.gene85171.t1
chr2.4 exon 3869748 3870003 3869748 ID=MS.gene85171.t1.exon4;Parent=MS.gene85171.t1
chr2.4 CDS 3869748 3870003 3869748 ID=cds.MS.gene85171.t1;Parent=MS.gene85171.t1
chr2.4 exon 3869455 3869651 3869455 ID=MS.gene85171.t1.exon5;Parent=MS.gene85171.t1
chr2.4 CDS 3869455 3869651 3869455 ID=cds.MS.gene85171.t1;Parent=MS.gene85171.t1
Gene Sequence

>MS.gene85171

ATGAAGATGAATATTAGAGAAGCATTTTTTGTTGTGTTTGCATTTGTGTTTTTGGGATGGGGGAATGCACAAGATGATACCGTTGTTCCGGCAATCGTGACGTTTGGTGACTCTGCTGTGGATGTGGGGAACAATGACTATCTTTTCACTCTTTTTAAAGCTAACTATCCTCCTTATGGAAGAGACTTTGTTAGCCATAAACCCACTGGGAGGTTTTGCAATGGCAAATTAGCTACTGATATTACTGGTAAGAATATAAACATCAAACATGCAACTCTCTTAGCTTAGATTGTAATTTTTTTTTTTTTAATAGGCAAAATGTTAGTATTTTCTCCATGGGTTTGAATCTCGGCCCTTTTAAGACCTTCAACACTTCTAATACTAATGTTAAACATGTAACTTTCATTCTTATTGAGTTGTTTCTTTTTGTAGCTGAAACACTGGGTTTTAAGAGTTATGCACCTGCATATCTTAGCCCTCAAGCAACAGGAAAAAACCTTCTTATTGGAGCAAATTTTGCTTCAGCTGCATCTGGTTATGATGAAAAGGCTGCTATCTTGAATGTAAGTTTGTGATGAACAACGCAAACACACGCTAGAAGATTCGTCTTTTTCTAACTCTTTTATTTTTTCACAGCACGCAATTCCATTGTCGCATCAGTTAAAATATTACAAGGAATACCAAAGTAAGCTTTCCAAGGTAGCTGGAAGTAAAAAGGCAGCATCAATTATTAAAGGTGCATTGTACCTATTGAGTGGTGGAAGTAGTGACTTTATCCAAAACTATTATGTCAATCCTTTAATCAACAAAGTTGTCACTCCTGATCAATATTCTGCATACCTTGTTGATACATACTCAAGTTTTGTTAAGGTATTCTGTTGTCATTAGAAATGTTGTAATACCATATATTTATAATAATTGTACTCTTCTAAAACTTTGAAAGATATCATAAGTATTATTTTCTATAACCATACCACATCGTTACAAATAAAACCATTTAAAGTTGCTTTGTTTTTTAACATAGGACTTGTATAAATTGGGAGCTAGAAAAATTGGAGTGACTTCACTACCACCATTGGGTTGCCTACCTGCTACAAGGACTTTGTTTGGATTCCATGAGAAAGGTTGTGTCACCAGAATCAACAATGATGCACAAGGATTTAACAAGAAAATCAACTCGGCTACAGCGAAACTCCAAAAGCAACTTCCTGGTCTTAAGATTGTTGTCTTTAATATTTACAAACCTCTCTATGAACTTGTTCAATCCCCTTCAAAATTTGGTAAGCAATACTTTTACTAGAATAACATACGATATTCATTTCTTTCTGTAAAAGAATGTTACTTATTCTCGTAATCTATCTTGTGACATTCAATAGGTTTTGCGGAGGCAAGGAAAGGCTGCTGTGGAACTGGGATTGTAGAGACGACATCCTTATTGTGCAATCAAAAGTCACCAGGAACCTGTTCTAATGCAACTCAGTATGTGTTTTGGGACAGTGTCCATCCTTCAGAAGCTGCTAACCAAGTTCTAGCTGATGCATTGATTGAACAAGGCATAAGCCTTATCGGTTAA

Protein sequence

>MS.gene85171.t1

MKMNIREAFFVVFAFVFLGWGNAQDDTVVPAIVTFGDSAVDVGNNDYLFTLFKANYPPYGRDFVSHKPTGRFCNGKLATDITAETLGFKSYAPAYLSPQATGKNLLIGANFASAASGYDEKAAILNHAIPLSHQLKYYKEYQSKLSKVAGSKKAASIIKGALYLLSGGSSDFIQNYYVNPLINKVVTPDQYSAYLVDTYSSFVKDLYKLGARKIGVTSLPPLGCLPATRTLFGFHEKGCVTRINNDAQGFNKKINSATAKLQKQLPGLKIVVFNIYKPLYELVQSPSKFGFAEARKGCCGTGIVETTSLLCNQKSPGTCSNATQYVFWDSVHPSEAANQVLADALIEQGISLIG