Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062907.t1 | XP_003607031.1 | 94 | 216 | 9 | 3 | 1 | 213 | 1 | 215 | 1.30E-97 | 365.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062907.t1 | Q945F0 | 79.5 | 112 | 23 | 0 | 97 | 208 | 90 | 201 | 6.3e-45 | 182.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062907.t1 | G7JJS5 | 94.0 | 216 | 9 | 3 | 1 | 213 | 1 | 215 | 9.2e-98 | 365.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene062907 | 0.819736 | 9.93E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene062907 | 0.83403 | 3.79E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene062907 | 0.826859 | 2.15E-54 | -1.69E-46 |
| MS.gene049232 | MS.gene062907 | 0.834453 | 2.97E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene062907 | 0.830467 | 2.89E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene062907 | 0.826202 | 3.09E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene062907 | 0.833518 | 5.09E-56 | -1.69E-46 |
| MS.gene050163 | MS.gene062907 | 0.80816 | 3.55E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene062907 | 0.806456 | 8.15E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene062907 | 0.806797 | 6.91E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene062907 | 0.805879 | 1.08E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene062907 | 0.8377 | 4.45E-57 | -1.69E-46 |
| MS.gene050518 | MS.gene062907 | 0.814215 | 1.73E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene062907 | 0.807864 | 4.10E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene062907 | 0.816749 | 4.71E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene062907 | 0.804523 | 2.07E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene062907 | 0.80702 | 6.20E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene062907 | 0.803801 | 2.93E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene062907 | 0.802563 | 5.29E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene062907 | 0.803657 | 3.14E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene062907 | 0.817789 | 2.75E-52 | -1.69E-46 |
| MS.gene051551 | MS.gene062907 | 0.843998 | 9.93E-59 | -1.69E-46 |
| MS.gene052164 | MS.gene062907 | 0.849234 | 3.69E-60 | -1.69E-46 |
| MS.gene052482 | MS.gene062907 | 0.814733 | 1.33E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene062907 | 0.815913 | 7.25E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene062907 | 0.815316 | 9.84E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene062907 | 0.807074 | 6.04E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene062907 | 0.810097 | 1.37E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene062907 | 0.807962 | 3.91E-50 | -1.69E-46 |
| MS.gene053626 | MS.gene062907 | 0.812152 | 4.90E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene062907 | 0.81846 | 1.94E-52 | -1.69E-46 |
| MS.gene053633 | MS.gene062907 | 0.80693 | 6.48E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene062907 | 0.823659 | 1.23E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene062907 | 0.809147 | 2.18E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene062907 | 0.812342 | 4.45E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene062907 | 0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene054954 | MS.gene062907 | 0.845699 | 3.45E-59 | -1.69E-46 |
| MS.gene055362 | MS.gene062907 | 0.836385 | 9.65E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene062907 | 0.818429 | 1.97E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene062907 | 0.814048 | 1.88E-51 | -1.69E-46 |
| MS.gene056046 | MS.gene062907 | 0.815942 | 7.14E-52 | -1.69E-46 |
| MS.gene056409 | MS.gene062907 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene062907 | 0.839722 | 1.34E-57 | -1.69E-46 |
| MS.gene056510 | MS.gene062907 | 0.839143 | 1.89E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene062907 | 0.830775 | 2.43E-55 | -1.69E-46 |
| MS.gene05787 | MS.gene062907 | 0.80046 | 1.43E-48 | -1.69E-46 |
| MS.gene058183 | MS.gene062907 | 0.813148 | 2.96E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene062907 | 0.824637 | 7.25E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene062907 | 0.832288 | 1.03E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene062907 | 0.807959 | 3.92E-50 | -1.69E-46 |
| MS.gene059034 | MS.gene062907 | 0.805314 | 1.42E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene062907 | 0.801345 | 9.41E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene062907 | 0.830811 | 2.38E-55 | -1.69E-46 |
| MS.gene059718 | MS.gene062907 | 0.832901 | 7.25E-56 | -1.69E-46 |
| MS.gene059865 | MS.gene062907 | 0.826633 | 2.44E-54 | -1.69E-46 |
| MS.gene060482 | MS.gene062907 | 0.819423 | 1.17E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene062907 | 0.830115 | 3.52E-55 | -1.69E-46 |
| MS.gene060762 | MS.gene062907 | 0.81515 | 1.07E-51 | -1.69E-46 |
| MS.gene060778 | MS.gene062907 | 0.807234 | 5.58E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene062907 | 0.811998 | 5.29E-51 | -1.69E-46 |
| MS.gene060982 | MS.gene062907 | 0.819287 | 1.26E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062907.t1 | MTR_4g071420 | 90.868 | 219 | 16 | 3 | 1 | 216 | 1 | 218 | 7.14e-130 | 373 |
| MS.gene062907.t1 | MTR_4g071420 | 90.868 | 219 | 16 | 3 | 1 | 216 | 1 | 218 | 1.62e-127 | 371 |
| MS.gene062907.t1 | MTR_4g071465 | 75.926 | 216 | 46 | 4 | 1 | 216 | 1 | 210 | 1.66e-98 | 296 |
| MS.gene062907.t1 | MTR_4g071445 | 74.312 | 218 | 51 | 4 | 1 | 216 | 1 | 215 | 2.19e-98 | 296 |
| MS.gene062907.t1 | MTR_4g071390 | 56.944 | 216 | 81 | 4 | 1 | 216 | 1 | 204 | 1.51e-70 | 224 |
| MS.gene062907.t1 | MTR_4g071370 | 55.607 | 214 | 66 | 5 | 11 | 212 | 17 | 213 | 2.06e-69 | 219 |
| MS.gene062907.t1 | MTR_4g071370 | 55.607 | 214 | 66 | 5 | 11 | 212 | 17 | 213 | 3.87e-69 | 219 |
| MS.gene062907.t1 | MTR_4g071370 | 55.607 | 214 | 66 | 5 | 11 | 212 | 17 | 213 | 3.54e-68 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062907.t1 | AT4G39030 | 79.464 | 112 | 23 | 0 | 97 | 208 | 90 | 201 | 2.21e-58 | 192 |
| MS.gene062907.t1 | AT2G21340 | 75.862 | 116 | 28 | 0 | 97 | 212 | 107 | 222 | 5.79e-58 | 192 |
| MS.gene062907.t1 | AT2G21340 | 75.862 | 116 | 28 | 0 | 97 | 212 | 107 | 222 | 7.15e-58 | 191 |
Find 47 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGACCTGCTATTGGTCTT+TGG | 0.222999 | 4.2:-36083980 | MS.gene062907:CDS |
| CTACTGTTCACAATGTTATT+TGG | 0.227670 | 4.2:-36082653 | MS.gene062907:CDS |
| AAGGAAATTGTATTGTTTAC+TGG | 0.254805 | 4.2:-36083999 | MS.gene062907:CDS |
| TCAATTGAACTTGCTGCTTT+AGG | 0.260915 | 4.2:-36083903 | MS.gene062907:intron |
| GTCGATTGCTACGTCGAATA+TGG | 0.279146 | 4.2:-36083734 | MS.gene062907:CDS |
| AAACCTCGCTGATTTGTTCT+TGG | 0.286580 | 4.2:+36084087 | None:intergenic |
| TACTTGTTGAACAGAGTATA+TGG | 0.327392 | 4.2:-36084031 | MS.gene062907:CDS |
| TGCTACTGCACTTGCTAAAC+AGG | 0.330445 | 4.2:-36083710 | MS.gene062907:intron |
| CTCATTGATACTGCTGTTGT+TGG | 0.336581 | 4.2:-36083936 | MS.gene062907:CDS |
| TTGTTTACTGGACCTGCTAT+TGG | 0.337810 | 4.2:-36083987 | MS.gene062907:CDS |
| TTTGAAGTACGCGAGGTGTT+AGG | 0.390174 | 4.2:+36084138 | None:intergenic |
| GCTATTGGTCTTTGGTTATG+TGG | 0.403668 | 4.2:-36083972 | MS.gene062907:CDS |
| GAGGTAAGCGGCAGTTTGAA+TGG | 0.426542 | 4.2:+36084249 | None:intergenic |
| TGTAATAATGCGTTGGTTTG+TGG | 0.437933 | 4.2:+36084190 | None:intergenic |
| TCGAGCCGGAACCGTCACTT+AGG | 0.470553 | 4.2:-36084164 | MS.gene062907:CDS |
| GTTTGTGGAATGGATGGTGG+TGG | 0.477193 | 4.2:+36084205 | None:intergenic |
| ATTGAACAATTCATCAGTCA+TGG | 0.489862 | 4.2:+36082527 | None:intergenic |
| TGGTGGTGGTGTTGTTGAGA+AGG | 0.500729 | 4.2:+36084219 | None:intergenic |
| TAATGCGTTGGTTTGTGGAA+TGG | 0.514924 | 4.2:+36084195 | None:intergenic |
| CATTGGATTAGTATGTGGCT+TGG | 0.515356 | 4.2:-36082681 | MS.gene062907:CDS |
| GGAACCCTAAGTGACGGTTC+CGG | 0.518207 | 4.2:+36084159 | None:intergenic |
| GGTGGTGGTGTTGTTGAGAA+GGG | 0.519739 | 4.2:+36084220 | None:intergenic |
| GAGTATATGGATTCAGATGA+AGG | 0.524134 | 4.2:-36084018 | MS.gene062907:CDS |
| TTGGTTTGTGGAATGGATGG+TGG | 0.538761 | 4.2:+36084202 | None:intergenic |
| CGAGCCGGAACCGTCACTTA+GGG | 0.545188 | 4.2:-36084163 | MS.gene062907:CDS |
| AGGTAAGCGGCAGTTTGAAT+GGG | 0.551253 | 4.2:+36084250 | None:intergenic |
| GGCAGTTTGAATGGGAAATG+AGG | 0.556423 | 4.2:+36084258 | None:intergenic |
| GCGTTGGTTTGTGGAATGGA+TGG | 0.560812 | 4.2:+36084199 | None:intergenic |
| TTGAATGGGAAATGAGGTTG+CGG | 0.561134 | 4.2:+36084264 | None:intergenic |
| TATGTTTGTGTAGGATAGGG+AGG | 0.568560 | 4.2:-36082735 | MS.gene062907:intron |
| TTTGGTGCGACAACGCTCGC+AGG | 0.573276 | 4.2:-36082635 | MS.gene062907:intron |
| TCGAGGATGTAATAATGCGT+TGG | 0.580401 | 4.2:+36084183 | None:intergenic |
| TTGAACAATTCATCAGTCAT+GGG | 0.588036 | 4.2:+36082528 | None:intergenic |
| TAAGTGACGGTTCCGGCTCG+AGG | 0.589489 | 4.2:+36084166 | None:intergenic |
| GATTGAAATGCAGTGAGAGT+TGG | 0.613518 | 4.2:+36084309 | None:intergenic |
| GATACTGCTGTTGTTGGTCA+AGG | 0.613645 | 4.2:-36083930 | MS.gene062907:CDS |
| ACAAGAACAAGAAGAAGTGA+AGG | 0.617515 | 4.2:-36084057 | MS.gene062907:CDS |
| ACAATTCATCAGTCATGGGT+AGG | 0.626709 | 4.2:+36082532 | None:intergenic |
| GTATCAATGAGACTCATCAA+TGG | 0.630837 | 4.2:+36083948 | None:intergenic |
| AAATGAGGTTGCGGTTATCG+AGG | 0.638411 | 4.2:+36084273 | None:intergenic |
| CATAACCAAAGACCAATAGC+AGG | 0.639786 | 4.2:+36083975 | None:intergenic |
| GCATTATTACATCCTCGAGC+CGG | 0.659051 | 4.2:-36084178 | MS.gene062907:CDS |
| GTGTTAGGAACCCTAAGTGA+CGG | 0.667289 | 4.2:+36084153 | None:intergenic |
| GAAGGGAATGAAGAGGTAAG+CGG | 0.672578 | 4.2:+36084237 | None:intergenic |
| TTGTTGAGAAGGGAATGAAG+AGG | 0.725276 | 4.2:+36084230 | None:intergenic |
| GGTTATCGAGGTGAAGAGTG+TGG | 0.755430 | 4.2:+36084285 | None:intergenic |
| ACACCAAGAACAAATCAGCG+AGG | 0.790634 | 4.2:-36084090 | MS.gene062907:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTCTTTTTCTTAT+GGG | - | chr4.2:36083479-36083498 | MS.gene062907:intron | 10.0% |
| !!! | TTTTTATTTTCTTTTTCTTA+TGG | - | chr4.2:36083478-36083497 | MS.gene062907:intron | 10.0% |
| !! | ATTCATACAATAAAATAAGA+CGG | - | chr4.2:36083992-36084011 | MS.gene062907:CDS | 15.0% |
| !!! | TTGTAAATATTCTAAGTTTT+TGG | - | chr4.2:36083308-36083327 | MS.gene062907:intron | 15.0% |
| !! | AAATTAATGATATAGAAGAG+AGG | - | chr4.2:36083622-36083641 | MS.gene062907:intron | 20.0% |
| !! | AATAATATCCAAAAGTTTGA+TGG | + | chr4.2:36084022-36084041 | None:intergenic | 20.0% |
| !!! | ATTTTCTATCCAATAAGAAA+AGG | + | chr4.2:36083524-36083543 | None:intergenic | 20.0% |
| !!! | ATTTTGTATACCATAAGAAA+AGG | + | chr4.2:36083188-36083207 | None:intergenic | 20.0% |
| !!! | TTTTCTATCCAATAAGAAAA+GGG | + | chr4.2:36083523-36083542 | None:intergenic | 20.0% |
| !!! | TTTTGTATACCATAAGAAAA+GGG | + | chr4.2:36083187-36083206 | None:intergenic | 20.0% |
| ! | AAATATGTTTGTGTAGGATA+GGG | - | chr4.2:36084119-36084138 | MS.gene062907:CDS | 25.0% |
| ! | AAGGAAATTGTATTGTTTAC+TGG | - | chr4.2:36082858-36082877 | MS.gene062907:intron | 25.0% |
| ! | AATTACTGTTATCCCATAAA+AGG | + | chr4.2:36084280-36084299 | None:intergenic | 25.0% |
| ! | ATATTTACTCATGAAAAGCA+GGG | + | chr4.2:36084105-36084124 | None:intergenic | 25.0% |
| ! | ATGAGTAAATATGTTTGTGT+AGG | - | chr4.2:36084113-36084132 | MS.gene062907:CDS | 25.0% |
| ! | ATTACTGTTATCCCATAAAA+GGG | + | chr4.2:36084279-36084298 | None:intergenic | 25.0% |
| ! | GTAATTCACTAATGCATAAA+TGG | - | chr4.2:36084294-36084313 | MS.gene062907:CDS | 25.0% |
| ! | TAAATATGTTTGTGTAGGAT+AGG | - | chr4.2:36084118-36084137 | MS.gene062907:CDS | 25.0% |
| ! | TCCATTAACTTATCTGTTAT+CGG | + | chr4.2:36083444-36083463 | None:intergenic | 25.0% |
| ! | TTTCTATCCAATAAGAAAAG+GGG | + | chr4.2:36083522-36083541 | None:intergenic | 25.0% |
| ! | TTTGTATACCATAAGAAAAG+GGG | + | chr4.2:36083186-36083205 | None:intergenic | 25.0% |
| !! | TTTTATTCCCCTTTTCTTAT+TGG | - | chr4.2:36083512-36083531 | MS.gene062907:intron | 25.0% |
| !!! | ACTGTTTTTTGCGATTATTT+GGG | - | chr4.2:36083082-36083101 | MS.gene062907:intron | 25.0% |
| !!! | TACTGTTTTTTGCGATTATT+TGG | - | chr4.2:36083081-36083100 | MS.gene062907:intron | 25.0% |
| ACCGATAACAGATAAGTTAA+TGG | - | chr4.2:36083440-36083459 | MS.gene062907:intron | 30.0% | |
| AGAGTCCGTAAAGAATAATA+GGG | + | chr4.2:36083711-36083730 | None:intergenic | 30.0% | |
| ATCAAAAGTCTTTATGGTAG+TGG | - | chr4.2:36083788-36083807 | MS.gene062907:intron | 30.0% | |
| CATATTTACTCATGAAAAGC+AGG | + | chr4.2:36084106-36084125 | None:intergenic | 30.0% | |
| CTACTGTTCACAATGTTATT+TGG | - | chr4.2:36084204-36084223 | MS.gene062907:CDS | 30.0% | |
| CTCATATGTCTAATGTTCTA+AGG | - | chr4.2:36083648-36083667 | MS.gene062907:intron | 30.0% | |
| GTTGTCCCTATTATTCTTTA+CGG | - | chr4.2:36083703-36083722 | MS.gene062907:intron | 30.0% | |
| TAATGTATGTGTGATGTGTA+TGG | - | chr4.2:36083029-36083048 | MS.gene062907:intron | 30.0% | |
| TATATCCATTATCCGCTATA+AGG | + | chr4.2:36083420-36083439 | None:intergenic | 30.0% | |
| TCTTGCATCAAAAGTCTTTA+TGG | - | chr4.2:36083782-36083801 | MS.gene062907:CDS | 30.0% | |
| TGAACTTATAATTGTGTGAG+TGG | - | chr4.2:36083227-36083246 | MS.gene062907:intron | 30.0% | |
| TGTATTTGTAAACTGAGAGT+TGG | - | chr4.2:36083555-36083574 | MS.gene062907:intron | 30.0% | |
| ! | TACTTGTTGAACAGAGTATA+TGG | - | chr4.2:36082826-36082845 | MS.gene062907:intron | 30.0% |
| ! | TCTTTATTCCCCTTTTCTTA+TGG | - | chr4.2:36083175-36083194 | MS.gene062907:intron | 30.0% |
| !! | ATATCTGTCTTGCTTTTCAT+TGG | - | chr4.2:36084159-36084178 | MS.gene062907:CDS | 30.0% |
| !! | TAATGTTCTAAGGTGTTTAG+TGG | - | chr4.2:36083658-36083677 | MS.gene062907:intron | 30.0% |
| !! | TTTTACATTGGTTGTGAATG+AGG | - | chr4.2:36083254-36083273 | MS.gene062907:intron | 30.0% |
| !!! | CTTTTCATTGGATTAGTATG+TGG | - | chr4.2:36084171-36084190 | MS.gene062907:CDS | 30.0% |
| ACAAGAACAAGAAGAAGTGA+AGG | - | chr4.2:36082800-36082819 | MS.gene062907:intron | 35.0% | |
| ATTCTCCCATCAAGTTAACA+CGG | + | chr4.2:36083753-36083772 | None:intergenic | 35.0% | |
| GAGAGTCCGTAAAGAATAAT+AGG | + | chr4.2:36083712-36083731 | None:intergenic | 35.0% | |
| GAGTATATGGATTCAGATGA+AGG | - | chr4.2:36082839-36082858 | MS.gene062907:intron | 35.0% | |
| GTATCAATGAGACTCATCAA+TGG | + | chr4.2:36082912-36082931 | None:intergenic | 35.0% | |
| TAATCGCAAAAAACAGTAGC+AGG | + | chr4.2:36083079-36083098 | None:intergenic | 35.0% | |
| TACTCATTATCAGCCAATGT+GGG | + | chr4.2:36083603-36083622 | None:intergenic | 35.0% | |
| TTACTCATTATCAGCCAATG+TGG | + | chr4.2:36083604-36083623 | None:intergenic | 35.0% | |
| ! | ACGGAAAACCATCAAACTTT+TGG | - | chr4.2:36084011-36084030 | MS.gene062907:CDS | 35.0% |
| ! | TGTGTGATGTGTATGGATTT+TGG | - | chr4.2:36083036-36083055 | MS.gene062907:intron | 35.0% |
| !! | TCAATTGAACTTGCTGCTTT+AGG | - | chr4.2:36082954-36082973 | MS.gene062907:intron | 35.0% |
| !! | TGTAATAATGCGTTGGTTTG+TGG | + | chr4.2:36082670-36082689 | None:intergenic | 35.0% |
| !!! | ATTTTGGTTTCTACATGAGC+AGG | - | chr4.2:36083052-36083071 | MS.gene062907:intron | 35.0% |
| !!! | GTGAGTGGTTAGTTTTACAT+TGG | - | chr4.2:36083242-36083261 | MS.gene062907:intron | 35.0% |
| AACTTGATGGGAGAATGAGA+TGG | - | chr4.2:36083757-36083776 | MS.gene062907:CDS | 40.0% | |
| ACTTGATGGGAGAATGAGAT+GGG | - | chr4.2:36083758-36083777 | MS.gene062907:CDS | 40.0% | |
| CATAACCAAAGACCAATAGC+AGG | + | chr4.2:36082885-36082904 | None:intergenic | 40.0% | |
| CTCATTGATACTGCTGTTGT+TGG | - | chr4.2:36082921-36082940 | MS.gene062907:intron | 40.0% | |
| GATTGAAATGCAGTGAGAGT+TGG | + | chr4.2:36082551-36082570 | None:intergenic | 40.0% | |
| GCTGATAAGCTACCTTATAG+CGG | - | chr4.2:36083405-36083424 | MS.gene062907:intron | 40.0% | |
| TATGTTTGTGTAGGATAGGG+AGG | - | chr4.2:36084122-36084141 | MS.gene062907:CDS | 40.0% | |
| TCGAGGATGTAATAATGCGT+TGG | + | chr4.2:36082677-36082696 | None:intergenic | 40.0% | |
| TGGTGTAGATGTGCAAGTTT+GGG | - | chr4.2:36083328-36083347 | MS.gene062907:intron | 40.0% | |
| TTGAATGGGAAATGAGGTTG+CGG | + | chr4.2:36082596-36082615 | None:intergenic | 40.0% | |
| TTGAGTGTTTAGTCCCACAT+TGG | - | chr4.2:36083587-36083606 | MS.gene062907:intron | 40.0% | |
| TTGGTGTAGATGTGCAAGTT+TGG | - | chr4.2:36083327-36083346 | MS.gene062907:intron | 40.0% | |
| TTGTTGAGAAGGGAATGAAG+AGG | + | chr4.2:36082630-36082649 | None:intergenic | 40.0% | |
| TTGTTTACTGGACCTGCTAT+TGG | - | chr4.2:36082870-36082889 | MS.gene062907:intron | 40.0% | |
| ! | CTCTCCAACAAGTGGTATTT+TGG | - | chr4.2:36083727-36083746 | MS.gene062907:CDS | 40.0% |
| ! | TTTGGCCGTGTTAACTTGAT+GGG | - | chr4.2:36083745-36083764 | MS.gene062907:CDS | 40.0% |
| !! | AAACCTCGCTGATTTGTTCT+TGG | + | chr4.2:36082773-36082792 | None:intergenic | 40.0% |
| !! | AGCTACCTTATAGCGGATAA+TGG | - | chr4.2:36083412-36083431 | MS.gene062907:intron | 40.0% |
| !! | CATTGGATTAGTATGTGGCT+TGG | - | chr4.2:36084176-36084195 | MS.gene062907:CDS | 40.0% |
| !! | GCTATTGGTCTTTGGTTATG+TGG | - | chr4.2:36082885-36082904 | MS.gene062907:intron | 40.0% |
| !! | GTCTTTATGGTAGTGGAGTA+AGG | - | chr4.2:36083795-36083814 | MS.gene062907:intron | 40.0% |
| !! | TAATGCGTTGGTTTGTGGAA+TGG | + | chr4.2:36082665-36082684 | None:intergenic | 40.0% |
| !! | TTTATGGTAGTGGAGTAAGG+TGG | - | chr4.2:36083798-36083817 | MS.gene062907:intron | 40.0% |
| !! | TTTTGGCCGTGTTAACTTGA+TGG | - | chr4.2:36083744-36083763 | MS.gene062907:CDS | 40.0% |
| !!! | TCTTGATTTTGAAGTACGCG+AGG | + | chr4.2:36082729-36082748 | None:intergenic | 40.0% |
| AAATGAGGTTGCGGTTATCG+AGG | + | chr4.2:36082587-36082606 | None:intergenic | 45.0% | |
| ACACCAAGAACAAATCAGCG+AGG | - | chr4.2:36082767-36082786 | MS.gene062907:intron | 45.0% | |
| ACACCCAACAATGACAACAG+CGG | - | chr4.2:36083924-36083943 | MS.gene062907:CDS | 45.0% | |
| ACGGCCAAAATACCACTTGT+TGG | + | chr4.2:36083734-36083753 | None:intergenic | 45.0% | |
| AGGTAAGCGGCAGTTTGAAT+GGG | + | chr4.2:36082610-36082629 | None:intergenic | 45.0% | |
| CCCATAAAAGGGACACAACT+GGG | + | chr4.2:36084268-36084287 | None:intergenic | 45.0% | |
| GAAGGGAATGAAGAGGTAAG+CGG | + | chr4.2:36082623-36082642 | None:intergenic | 45.0% | |
| GATACTGCTGTTGTTGGTCA+AGG | - | chr4.2:36082927-36082946 | MS.gene062907:intron | 45.0% | |
| GCATTATTACATCCTCGAGC+CGG | - | chr4.2:36082679-36082698 | MS.gene062907:CDS | 45.0% | |
| GGCAGTTTGAATGGGAAATG+AGG | + | chr4.2:36082602-36082621 | None:intergenic | 45.0% | |
| GTCGATTGCTACGTCGAATA+TGG | - | chr4.2:36083123-36083142 | MS.gene062907:intron | 45.0% | |
| GTGTTAGGAACCCTAAGTGA+CGG | + | chr4.2:36082707-36082726 | None:intergenic | 45.0% | |
| TCCCATAAAAGGGACACAAC+TGG | + | chr4.2:36084269-36084288 | None:intergenic | 45.0% | |
| TGATGTGCGAGACTCATAAC+TGG | - | chr4.2:36083858-36083877 | MS.gene062907:intron | 45.0% | |
| TTTACGGACTCTCCAACAAG+TGG | - | chr4.2:36083719-36083738 | MS.gene062907:CDS | 45.0% | |
| ! | CCCAGTTGTGTCCCTTTTAT+GGG | - | chr4.2:36084265-36084284 | MS.gene062907:CDS | 45.0% |
| ! | TGCTACTGCACTTGCTAAAC+AGG | - | chr4.2:36083147-36083166 | MS.gene062907:intron | 45.0% |
| ! | TTTGAAGTACGCGAGGTGTT+AGG | + | chr4.2:36082722-36082741 | None:intergenic | 45.0% |
| !! | TTGGTTTGTGGAATGGATGG+TGG | + | chr4.2:36082658-36082677 | None:intergenic | 45.0% |
| AGTAAGGTGGCGTGCTTTGT+TGG | - | chr4.2:36083811-36083830 | MS.gene062907:intron | 50.0% | |
| CCTCCGCTGTTGTCATTGTT+GGG | + | chr4.2:36083930-36083949 | None:intergenic | 50.0% | |
| GAGGTAAGCGGCAGTTTGAA+TGG | + | chr4.2:36082611-36082630 | None:intergenic | 50.0% | |
| GGTTATCGAGGTGAAGAGTG+TGG | + | chr4.2:36082575-36082594 | None:intergenic | 50.0% | |
| TCCTCCGCTGTTGTCATTGT+TGG | + | chr4.2:36083931-36083950 | None:intergenic | 50.0% | |
| ! | GCCCAGTTGTGTCCCTTTTA+TGG | - | chr4.2:36084264-36084283 | MS.gene062907:CDS | 50.0% |
| ! | GTTTGTGGAATGGATGGTGG+TGG | + | chr4.2:36082655-36082674 | None:intergenic | 50.0% |
| !! | CTGGACCTGCTATTGGTCTT+TGG | - | chr4.2:36082877-36082896 | MS.gene062907:intron | 50.0% |
| !! | GCGTTGGTTTGTGGAATGGA+TGG | + | chr4.2:36082661-36082680 | None:intergenic | 50.0% |
| !! | GGTGGTGGTGTTGTTGAGAA+GGG | + | chr4.2:36082640-36082659 | None:intergenic | 50.0% |
| !! | TGGTGGTGGTGTTGTTGAGA+AGG | + | chr4.2:36082641-36082660 | None:intergenic | 50.0% |
| CCCAACAATGACAACAGCGG+AGG | - | chr4.2:36083927-36083946 | MS.gene062907:CDS | 55.0% | |
| GGAACCCTAAGTGACGGTTC+CGG | + | chr4.2:36082701-36082720 | None:intergenic | 55.0% | |
| ! | AGGTGGCGTGCTTTGTTGGA+TGG | - | chr4.2:36083815-36083834 | MS.gene062907:intron | 55.0% |
| CGAGCCGGAACCGTCACTTA+GGG | - | chr4.2:36082694-36082713 | MS.gene062907:CDS | 60.0% | |
| TCGAGCCGGAACCGTCACTT+AGG | - | chr4.2:36082693-36082712 | MS.gene062907:CDS | 60.0% | |
| ! | TAAGTGACGGTTCCGGCTCG+AGG | + | chr4.2:36082694-36082713 | None:intergenic | 60.0% |
| ! | TTTGGTGCGACAACGCTCGC+AGG | - | chr4.2:36084222-36084241 | MS.gene062907:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 36082540 | 36084339 | 36082540 | ID=MS.gene062907 |
| chr4.2 | mRNA | 36082540 | 36084339 | 36082540 | ID=MS.gene062907.t1;Parent=MS.gene062907 |
| chr4.2 | exon | 36083904 | 36084339 | 36083904 | ID=MS.gene062907.t1.exon1;Parent=MS.gene062907.t1 |
| chr4.2 | CDS | 36083904 | 36084339 | 36083904 | ID=cds.MS.gene062907.t1;Parent=MS.gene062907.t1 |
| chr4.2 | exon | 36083711 | 36083805 | 36083711 | ID=MS.gene062907.t1.exon2;Parent=MS.gene062907.t1 |
| chr4.2 | CDS | 36083711 | 36083805 | 36083711 | ID=cds.MS.gene062907.t1;Parent=MS.gene062907.t1 |
| chr4.2 | exon | 36082636 | 36082744 | 36082636 | ID=MS.gene062907.t1.exon3;Parent=MS.gene062907.t1 |
| chr4.2 | CDS | 36082636 | 36082744 | 36082636 | ID=cds.MS.gene062907.t1;Parent=MS.gene062907.t1 |
| chr4.2 | exon | 36082540 | 36082556 | 36082540 | ID=MS.gene062907.t1.exon4;Parent=MS.gene062907.t1 |
| chr4.2 | CDS | 36082540 | 36082556 | 36082540 | ID=cds.MS.gene062907.t1;Parent=MS.gene062907.t1 |
| Gene Sequence |
| Protein sequence |
