Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064810.t1 | XP_024634993.1 | 95.5 | 331 | 14 | 1 | 1 | 331 | 1 | 330 | 7.00E-180 | 639.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064810.t1 | Q9SGS2 | 61.4 | 308 | 111 | 4 | 18 | 322 | 25 | 327 | 4.2e-101 | 369.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064810.t1 | A0A072V3N9 | 94.9 | 331 | 13 | 1 | 1 | 331 | 1 | 327 | 9.5e-179 | 635.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064810.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene064810 | 0.839229 | 1.80E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene064810 | 0.860143 | 2.54E-63 | -1.69E-46 |
| MS.gene049232 | MS.gene064810 | 0.84616 | 2.59E-59 | -1.69E-46 |
| MS.gene049285 | MS.gene064810 | 0.83051 | 2.82E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene064810 | 0.839649 | 1.40E-57 | -1.69E-46 |
| MS.gene05010 | MS.gene064810 | 0.825056 | 5.77E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene064810 | 0.8294 | 5.26E-55 | -1.69E-46 |
| MS.gene050165 | MS.gene064810 | 0.834644 | 2.66E-56 | -1.69E-46 |
| MS.gene050216 | MS.gene064810 | 0.827946 | 1.18E-54 | -1.69E-46 |
| MS.gene050323 | MS.gene064810 | 0.809787 | 1.59E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene064810 | 0.816068 | 6.69E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene064810 | 0.846683 | 1.86E-59 | -1.69E-46 |
| MS.gene050518 | MS.gene064810 | 0.812574 | 3.96E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene064810 | 0.811886 | 5.59E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene064810 | 0.81927 | 1.27E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene064810 | 0.80476 | 1.85E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene064810 | 0.816638 | 4.99E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene064810 | 0.824267 | 8.85E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene064810 | 0.816693 | 4.85E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene064810 | 0.812056 | 5.14E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene064810 | 0.811577 | 6.53E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene064810 | 0.813519 | 2.46E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene064810 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene051551 | MS.gene064810 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene064810 | 0.832869 | 7.39E-56 | -1.69E-46 |
| MS.gene051858 | MS.gene064810 | 0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene052164 | MS.gene064810 | 0.816914 | 4.33E-52 | -1.69E-46 |
| MS.gene052486 | MS.gene064810 | 0.807378 | 5.21E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene064810 | 0.803814 | 2.91E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene064810 | 0.803949 | 2.73E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene064810 | 0.803607 | 3.22E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene064810 | 0.813648 | 2.30E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene064810 | 0.801718 | 7.89E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene064810 | 0.829877 | 4.03E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene064810 | 0.822305 | 2.54E-53 | -1.69E-46 |
| MS.gene053421 | MS.gene064810 | -0.817225 | 3.68E-52 | -1.69E-46 |
| MS.gene053436 | MS.gene064810 | 0.810303 | 1.23E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene064810 | 0.810763 | 9.81E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene064810 | 0.829428 | 5.18E-55 | -1.69E-46 |
| MS.gene054003 | MS.gene064810 | 0.815412 | 9.37E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene064810 | 0.808042 | 3.76E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene064810 | 0.833223 | 6.03E-56 | -1.69E-46 |
| MS.gene054954 | MS.gene064810 | 0.828748 | 7.57E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene064810 | 0.840603 | 7.87E-58 | -1.69E-46 |
| MS.gene055502 | MS.gene064810 | 0.842044 | 3.29E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene064810 | 0.829542 | 4.86E-55 | -1.69E-46 |
| MS.gene056046 | MS.gene064810 | 0.807524 | 4.85E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene064810 | 0.839875 | 1.22E-57 | -1.69E-46 |
| MS.gene056510 | MS.gene064810 | 0.812831 | 3.48E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene064810 | 0.843533 | 1.32E-58 | -1.69E-46 |
| MS.gene058157 | MS.gene064810 | 0.811306 | 7.48E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene064810 | 0.80416 | 2.47E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene064810 | 0.834975 | 2.20E-56 | -1.69E-46 |
| MS.gene058544 | MS.gene064810 | 0.808917 | 2.45E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene064810 | 0.823786 | 1.15E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene064810 | 0.842084 | 3.21E-58 | -1.69E-46 |
| MS.gene05934 | MS.gene064810 | 0.809728 | 1.64E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene064810 | 0.836969 | 6.85E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene064810 | 0.824776 | 6.72E-54 | -1.69E-46 |
| MS.gene059801 | MS.gene064810 | 0.808044 | 3.76E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene064810 | 0.814911 | 1.21E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene064810 | 0.828403 | 9.17E-55 | -1.69E-46 |
| MS.gene060703 | MS.gene064810 | 0.81403 | 1.90E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene064810 | 0.813318 | 2.72E-51 | -1.69E-46 |
| MS.gene060778 | MS.gene064810 | 0.816714 | 4.80E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene064810 | 0.831121 | 2.00E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064810.t1 | MTR_3g114920 | 94.864 | 331 | 13 | 1 | 1 | 331 | 1 | 327 | 0.0 | 630 |
| MS.gene064810.t1 | MTR_1g116180 | 45.566 | 327 | 138 | 8 | 20 | 321 | 24 | 335 | 3.73e-89 | 273 |
| MS.gene064810.t1 | MTR_7g005970 | 45.312 | 320 | 157 | 9 | 20 | 329 | 25 | 336 | 1.26e-82 | 257 |
| MS.gene064810.t1 | MTR_1g116180 | 45.545 | 303 | 125 | 8 | 20 | 297 | 24 | 311 | 4.76e-80 | 247 |
| MS.gene064810.t1 | MTR_3g009890 | 37.829 | 304 | 115 | 7 | 20 | 317 | 29 | 264 | 2.43e-50 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064810.t1 | AT1G76110 | 63.636 | 308 | 104 | 5 | 18 | 322 | 25 | 327 | 1.20e-131 | 379 |
| MS.gene064810.t1 | AT1G04880 | 41.486 | 323 | 156 | 6 | 23 | 321 | 21 | 334 | 1.01e-78 | 247 |
| MS.gene064810.t1 | AT3G13350 | 40.476 | 294 | 152 | 4 | 25 | 317 | 34 | 305 | 7.80e-65 | 207 |
| MS.gene064810.t1 | AT1G55650 | 36.213 | 301 | 142 | 8 | 27 | 321 | 30 | 286 | 1.71e-53 | 179 |
Find 78 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAGTTAGTTACATGAATT+TGG | 0.209705 | 3.4:+98370694 | None:intergenic |
| CCAGGACTGACCAATCATTT+TGG | 0.213880 | 3.4:+98369269 | None:intergenic |
| GCACTATAATTTACCATCTT+AGG | 0.243959 | 3.4:+98370111 | None:intergenic |
| AGACGATGATTCATGTCTTT+TGG | 0.244218 | 3.4:-98369598 | MS.gene064810:CDS |
| TTAACGACCCTACTCTCTTT+TGG | 0.246597 | 3.4:-98370751 | MS.gene064810:CDS |
| TTATATAGTGTCAGTGAAAT+TGG | 0.257424 | 3.4:-98369541 | MS.gene064810:CDS |
| GTAAACTCCCTTTCTCTGTT+TGG | 0.269610 | 3.4:+98369291 | None:intergenic |
| AAGTTATAGCCACTCCTATT+TGG | 0.286925 | 3.4:+98369354 | None:intergenic |
| TTCAGAGCTGAGACTATTCC+AGG | 0.293074 | 3.4:+98369251 | None:intergenic |
| AGTTCACTTCTTCAAAGTTC+AGG | 0.296129 | 3.4:-98370316 | MS.gene064810:CDS |
| TAAACTCCCTTTCTCTGTTT+GGG | 0.301975 | 3.4:+98369292 | None:intergenic |
| CCAACTATCCAAAGCCAAAT+AGG | 0.317522 | 3.4:-98369368 | MS.gene064810:CDS |
| TATTGAACAATAGCTAATTC+AGG | 0.323525 | 3.4:+98370138 | None:intergenic |
| CTATTTGGCTTTGGATAGTT+GGG | 0.336021 | 3.4:+98369369 | None:intergenic |
| CCTATTTGGCTTTGGATAGT+TGG | 0.350904 | 3.4:+98369368 | None:intergenic |
| TTACCAAAACATTGGCTTAA+GGG | 0.366684 | 3.4:-98369066 | MS.gene064810:CDS |
| TTTACCAAAACATTGGCTTA+AGG | 0.369159 | 3.4:-98369067 | MS.gene064810:CDS |
| TAGCCACTCCTATTTGGCTT+TGG | 0.371071 | 3.4:+98369360 | None:intergenic |
| TTGGGAAAAGGAACAATAGA+AGG | 0.380812 | 3.4:-98369579 | MS.gene064810:CDS |
| AGCGGTTTCTCCTTCATCAT+TGG | 0.385924 | 3.4:-98369478 | MS.gene064810:CDS |
| AGGTTGTTGCAGAGAAGAAA+TGG | 0.399101 | 3.4:-98370437 | MS.gene064810:CDS |
| TCCTACCCAAGCGATGAGTT+TGG | 0.411390 | 3.4:+98369418 | None:intergenic |
| GAGAAGAAATGGAGAGAAGT+AGG | 0.422027 | 3.4:-98370426 | MS.gene064810:CDS |
| TGTCCCTTAAGCCAATGTTT+TGG | 0.427681 | 3.4:+98369063 | None:intergenic |
| TGTTCAATATTCACCTAAGA+TGG | 0.427917 | 3.4:-98370124 | MS.gene064810:CDS |
| AGGGAGTTTACCAAAATGAT+TGG | 0.428453 | 3.4:-98369279 | MS.gene064810:CDS |
| AACTCTACCCAAACAGAGAA+AGG | 0.437948 | 3.4:-98369299 | MS.gene064810:CDS |
| TATATAGTGTCAGTGAAATT+GGG | 0.442454 | 3.4:-98369540 | MS.gene064810:CDS |
| CCAAAATGATTGGTCAGTCC+TGG | 0.444792 | 3.4:-98369269 | MS.gene064810:CDS |
| TTGCATAGGATTCCTGTGAT+TGG | 0.455163 | 3.4:-98370595 | MS.gene064810:intron |
| GTTCACTTCTTCAAAGTTCA+GGG | 0.455272 | 3.4:-98370315 | MS.gene064810:CDS |
| CAATCACCAAACTCATCGCT+TGG | 0.458935 | 3.4:-98369424 | MS.gene064810:CDS |
| TGGGTTCAGAAGTTCTCAAA+GGG | 0.460026 | 3.4:-98369521 | MS.gene064810:CDS |
| TCGTCGCTTTCACTTTCTCA+TGG | 0.469995 | 3.4:-98370720 | MS.gene064810:CDS |
| TTTGCCTTCGTCGTCGTCGC+CGG | 0.479624 | 3.4:+98370811 | None:intergenic |
| TTGTGAGAGGCGAGTGGGTG+AGG | 0.488368 | 3.4:+98370782 | None:intergenic |
| TCTCAGCTCTGAAGAAAGAA+TGG | 0.490573 | 3.4:-98369241 | MS.gene064810:intron |
| AAGGTACAAAAGAGAGTTGA+CGG | 0.495764 | 3.4:-98369036 | MS.gene064810:CDS |
| CGATGAGTTTGGTGATTGAA+TGG | 0.504304 | 3.4:+98369429 | None:intergenic |
| GATTCCTGTGATTGGTGGTA+AGG | 0.506284 | 3.4:-98370587 | MS.gene064810:CDS |
| TTGCAGATTTACCAAAACAT+TGG | 0.511934 | 3.4:-98369074 | MS.gene064810:intron |
| ATAGAAGGAAAATTTGATTG+TGG | 0.518312 | 3.4:-98369564 | MS.gene064810:CDS |
| AAACTCATCGCTTGGGTAGG+AGG | 0.523054 | 3.4:-98369416 | MS.gene064810:CDS |
| TTCTCTACGTGGAAGTTACA+AGG | 0.523185 | 3.4:-98370549 | MS.gene064810:CDS |
| TTGGCTTAAGGGACAAAGAA+AGG | 0.525876 | 3.4:-98369055 | MS.gene064810:CDS |
| AGAGTGTCCCAAAAGAGAGT+AGG | 0.527303 | 3.4:+98370743 | None:intergenic |
| GAGTGTCCCAAAAGAGAGTA+GGG | 0.533581 | 3.4:+98370744 | None:intergenic |
| AATCACCAAACTCATCGCTT+GGG | 0.544065 | 3.4:-98369423 | MS.gene064810:CDS |
| CATAGGATTCCTGTGATTGG+TGG | 0.550359 | 3.4:-98370592 | MS.gene064810:intron |
| AGTGCTGAATCTCATGATGA+AGG | 0.550456 | 3.4:-98370093 | MS.gene064810:intron |
| CGAAATAGTAATACCTGGTG+AGG | 0.553336 | 3.4:+98370278 | None:intergenic |
| TTGGTGATTGAATGGCTCAA+TGG | 0.554617 | 3.4:+98369437 | None:intergenic |
| AAAAGAAGCGCTTGTAGTGG+TGG | 0.559395 | 3.4:+98370383 | None:intergenic |
| GAAATAGTAATACCTGGTGA+GGG | 0.568622 | 3.4:+98370279 | None:intergenic |
| ACTCTACCCAAACAGAGAAA+GGG | 0.569820 | 3.4:-98369298 | MS.gene064810:CDS |
| TTGGGTTCAGAAGTTCTCAA+AGG | 0.586901 | 3.4:-98369522 | MS.gene064810:CDS |
| GGAGTACAAACAGAAAATGA+AGG | 0.592924 | 3.4:-98369015 | MS.gene064810:CDS |
| GCTAATTCAGGTTTCCACGA+TGG | 0.602804 | 3.4:+98370150 | None:intergenic |
| AAGGAGAAGCGGTTATGAGA+AGG | 0.604277 | 3.4:-98370530 | MS.gene064810:intron |
| AGCTCCTTACCACCAATCAC+AGG | 0.612482 | 3.4:+98370583 | None:intergenic |
| GTTAACGACGTCGTTGTGAG+AGG | 0.614603 | 3.4:+98370769 | None:intergenic |
| ACGTCGTTGTGAGAGGCGAG+TGG | 0.618608 | 3.4:+98370776 | None:intergenic |
| TTGTGCAGACAGAAGAACTC+GGG | 0.623939 | 3.4:-98368992 | MS.gene064810:CDS |
| TACAAAAGAAGCGCTTGTAG+TGG | 0.625201 | 3.4:+98370380 | None:intergenic |
| TGTTGTGTAACCAATGATGA+AGG | 0.625666 | 3.4:+98369468 | None:intergenic |
| CGTCGTTGTGAGAGGCGAGT+GGG | 0.633264 | 3.4:+98370777 | None:intergenic |
| AACTCCGGCGACGACGACGA+AGG | 0.636321 | 3.4:-98370815 | MS.gene064810:CDS |
| TATCCAAAGCCAAATAGGAG+TGG | 0.645627 | 3.4:-98369363 | MS.gene064810:CDS |
| TGATTTGCACGTTCTCTACG+TGG | 0.652993 | 3.4:-98370560 | MS.gene064810:CDS |
| AAATAGTAATACCTGGTGAG+GGG | 0.654247 | 3.4:+98370280 | None:intergenic |
| GCGGTGAGAAGCAAGAACTC+CGG | 0.655187 | 3.4:-98370830 | MS.gene064810:CDS |
| ACCAAACTCATCGCTTGGGT+AGG | 0.660160 | 3.4:-98369419 | MS.gene064810:CDS |
| GTGGAAGTTACAAGGAGAAG+CGG | 0.661449 | 3.4:-98370541 | MS.gene064810:CDS |
| AATAGTAATACCTGGTGAGG+GGG | 0.665808 | 3.4:+98370281 | None:intergenic |
| GTTGTGCAGACAGAAGAACT+CGG | 0.678933 | 3.4:-98368993 | MS.gene064810:CDS |
| TTTCTGGTAACAGTCCATCG+TGG | 0.712333 | 3.4:-98370164 | MS.gene064810:CDS |
| GGGTTCAGAAGTTCTCAAAG+GGG | 0.716935 | 3.4:-98369520 | MS.gene064810:CDS |
| TCATTGGTTACACAACACAA+CGG | 0.736779 | 3.4:-98369462 | MS.gene064810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAATAATTCAAATTTC+AGG | - | chr3.4:98369368-98369387 | MS.gene064810:CDS | 10.0% |
| !! | AAATGAAATCACATTTATAA+TGG | + | chr3.4:98369211-98369230 | None:intergenic | 15.0% |
| !! | ACAAAAAATAGTATAAATGA+AGG | + | chr3.4:98369332-98369351 | None:intergenic | 15.0% |
| !! | CAAAAAATAGTATAAATGAA+GGG | + | chr3.4:98369331-98369350 | None:intergenic | 15.0% |
| !! | AAGAAAGAATGGTAATTAAA+AGG | - | chr3.4:98370595-98370614 | MS.gene064810:intron | 20.0% |
| !! | AGAAAGAATGGTAATTAAAA+GGG | - | chr3.4:98370596-98370615 | MS.gene064810:intron | 20.0% |
| !! | AGATATTGAAATTACAGAAT+TGG | - | chr3.4:98369817-98369836 | MS.gene064810:intron | 20.0% |
| !! | TAATGGTTATTTATCAAGTT+AGG | - | chr3.4:98369760-98369779 | MS.gene064810:intron | 20.0% |
| !! | TTGAAAAAGTAAATGAAGAA+AGG | + | chr3.4:98369164-98369183 | None:intergenic | 20.0% |
| ! | ACTAGTTAGTTACATGAATT+TGG | + | chr3.4:98369134-98369153 | None:intergenic | 25.0% |
| ! | ATAGAAGGAAAATTTGATTG+TGG | - | chr3.4:98370261-98370280 | MS.gene064810:intron | 25.0% |
| ! | GAAAGTAGTTTATGATGTTA+AGG | - | chr3.4:98370011-98370030 | MS.gene064810:intron | 25.0% |
| ! | TATATAGTGTCAGTGAAATT+GGG | - | chr3.4:98370285-98370304 | MS.gene064810:intron | 25.0% |
| ! | TATTGAACAATAGCTAATTC+AGG | + | chr3.4:98369690-98369709 | None:intergenic | 25.0% |
| ! | TCATGATGAAGGTAATTTAA+TGG | - | chr3.4:98369743-98369762 | MS.gene064810:intron | 25.0% |
| ! | TTATATAGTGTCAGTGAAAT+TGG | - | chr3.4:98370284-98370303 | MS.gene064810:intron | 25.0% |
| ! | TTGGTAAATCTGCAATATTA+GGG | + | chr3.4:98370746-98370765 | None:intergenic | 25.0% |
| ! | TTTGGTAAATCTGCAATATT+AGG | + | chr3.4:98370747-98370766 | None:intergenic | 25.0% |
| !! | AATGTGATTTCATTTTGCAT+AGG | - | chr3.4:98369216-98369235 | MS.gene064810:intron | 25.0% |
| !! | CACATTTATAATGGTACTTT+TGG | + | chr3.4:98369202-98369221 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTATCTAGAATC+TGG | - | chr3.4:98370662-98370681 | MS.gene064810:intron | 25.0% |
| !!! | TCTGCATATTTAATTTGTCA+TGG | - | chr3.4:98370154-98370173 | MS.gene064810:CDS | 25.0% |
| !!! | TTATAATGGTACTTTTGGTT+TGG | + | chr3.4:98369197-98369216 | None:intergenic | 25.0% |
| AATAGCGAAATAGTAATACC+TGG | + | chr3.4:98369555-98369574 | None:intergenic | 30.0% | |
| ACTCATTTGTGATTCTACTA+AGG | - | chr3.4:98369941-98369960 | MS.gene064810:intron | 30.0% | |
| CAACAATGTAAAGACCAATT+AGG | + | chr3.4:98370649-98370668 | None:intergenic | 30.0% | |
| GAAATTACAGAATTGGAATC+AGG | - | chr3.4:98369824-98369843 | MS.gene064810:intron | 30.0% | |
| GAAGAGAAGAAAAAGAAAGT+GGG | - | chr3.4:98370431-98370450 | MS.gene064810:CDS | 30.0% | |
| GCACTATAATTTACCATCTT+AGG | + | chr3.4:98369717-98369736 | None:intergenic | 30.0% | |
| TGTTCAATATTCACCTAAGA+TGG | - | chr3.4:98369701-98369720 | MS.gene064810:intron | 30.0% | |
| TTGCAGATTTACCAAAACAT+TGG | - | chr3.4:98370751-98370770 | MS.gene064810:CDS | 30.0% | |
| ! | TATATTGCAGATGCATTTTC+TGG | - | chr3.4:98369645-98369664 | MS.gene064810:intron | 30.0% |
| ! | TATCTAGAATCTGGTTATCA+GGG | - | chr3.4:98370671-98370690 | MS.gene064810:intron | 30.0% |
| ! | TTATCTAGAATCTGGTTATC+AGG | - | chr3.4:98370670-98370689 | MS.gene064810:intron | 30.0% |
| !! | TTACCAAAACATTGGCTTAA+GGG | - | chr3.4:98370759-98370778 | MS.gene064810:CDS | 30.0% |
| !! | TTTACCAAAACATTGGCTTA+AGG | - | chr3.4:98370758-98370777 | MS.gene064810:CDS | 30.0% |
| !!! | GTGTGTTGTTTTATCCTAAT+TGG | - | chr3.4:98370632-98370651 | MS.gene064810:intron | 30.0% |
| AAATAGTAATACCTGGTGAG+GGG | + | chr3.4:98369548-98369567 | None:intergenic | 35.0% | |
| AAGGTACAAAAGAGAGTTGA+CGG | - | chr3.4:98370789-98370808 | MS.gene064810:CDS | 35.0% | |
| AAGTTATAGCCACTCCTATT+TGG | + | chr3.4:98370474-98370493 | None:intergenic | 35.0% | |
| AGGGAGTTTACCAAAATGAT+TGG | - | chr3.4:98370546-98370565 | MS.gene064810:CDS | 35.0% | |
| AGTTCACTTCTTCAAAGTTC+AGG | - | chr3.4:98369509-98369528 | MS.gene064810:CDS | 35.0% | |
| GAAATAGTAATACCTGGTGA+GGG | + | chr3.4:98369549-98369568 | None:intergenic | 35.0% | |
| GGAAGAGAAGAAAAAGAAAG+TGG | - | chr3.4:98370430-98370449 | MS.gene064810:CDS | 35.0% | |
| GGAGTACAAACAGAAAATGA+AGG | - | chr3.4:98370810-98370829 | MS.gene064810:CDS | 35.0% | |
| GTTCACTTCTTCAAAGTTCA+GGG | - | chr3.4:98369510-98369529 | MS.gene064810:CDS | 35.0% | |
| TAAACTCCCTTTCTCTGTTT+GGG | + | chr3.4:98370536-98370555 | None:intergenic | 35.0% | |
| TGCTGCTAAGAATTGAAAGT+TGG | - | chr3.4:98369980-98369999 | MS.gene064810:intron | 35.0% | |
| TGTTGTGTAACCAATGATGA+AGG | + | chr3.4:98370360-98370379 | None:intergenic | 35.0% | |
| TTGGGAAAAGGAACAATAGA+AGG | - | chr3.4:98370246-98370265 | MS.gene064810:intron | 35.0% | |
| ! | AGACGATGATTCATGTCTTT+TGG | - | chr3.4:98370227-98370246 | MS.gene064810:intron | 35.0% |
| ! | GACGATGATTCATGTCTTTT+GGG | - | chr3.4:98370228-98370247 | MS.gene064810:intron | 35.0% |
| ! | TAGAAGTAGAAGCATGATTG+TGG | - | chr3.4:98370071-98370090 | MS.gene064810:intron | 35.0% |
| ! | TCATTGGTTACACAACACAA+CGG | - | chr3.4:98370363-98370382 | MS.gene064810:CDS | 35.0% |
| !! | CTATTTGGCTTTGGATAGTT+GGG | + | chr3.4:98370459-98370478 | None:intergenic | 35.0% |
| !! | GATTCATGTCTTTTGGGAAA+AGG | - | chr3.4:98370234-98370253 | MS.gene064810:intron | 35.0% |
| AACTCTACCCAAACAGAGAA+AGG | - | chr3.4:98370526-98370545 | MS.gene064810:intron | 40.0% | |
| AATAGTAATACCTGGTGAGG+GGG | + | chr3.4:98369547-98369566 | None:intergenic | 40.0% | |
| AATCACCAAACTCATCGCTT+GGG | - | chr3.4:98370402-98370421 | MS.gene064810:CDS | 40.0% | |
| ACTCTACCCAAACAGAGAAA+GGG | - | chr3.4:98370527-98370546 | MS.gene064810:intron | 40.0% | |
| AGGTTGTTGCAGAGAAGAAA+TGG | - | chr3.4:98369388-98369407 | MS.gene064810:CDS | 40.0% | |
| CCAACTATCCAAAGCCAAAT+AGG | - | chr3.4:98370457-98370476 | MS.gene064810:intron | 40.0% | |
| CGAAATAGTAATACCTGGTG+AGG | + | chr3.4:98369550-98369569 | None:intergenic | 40.0% | |
| GAGAAGAAATGGAGAGAAGT+AGG | - | chr3.4:98369399-98369418 | MS.gene064810:CDS | 40.0% | |
| GCTTTACCATCCAGAAAAAG+CGG | - | chr3.4:98370329-98370348 | MS.gene064810:CDS | 40.0% | |
| GTAAACTCCCTTTCTCTGTT+TGG | + | chr3.4:98370537-98370556 | None:intergenic | 40.0% | |
| TATCCAAAGCCAAATAGGAG+TGG | - | chr3.4:98370462-98370481 | MS.gene064810:intron | 40.0% | |
| TGGGTTCAGAAGTTCTCAAA+GGG | - | chr3.4:98370304-98370323 | MS.gene064810:CDS | 40.0% | |
| TTCTCTACGTGGAAGTTACA+AGG | - | chr3.4:98369276-98369295 | MS.gene064810:CDS | 40.0% | |
| TTGCATAGGATTCCTGTGAT+TGG | - | chr3.4:98369230-98369249 | MS.gene064810:intron | 40.0% | |
| TTGGCTTAAGGGACAAAGAA+AGG | - | chr3.4:98370770-98370789 | MS.gene064810:CDS | 40.0% | |
| TTGGGTTCAGAAGTTCTCAA+AGG | - | chr3.4:98370303-98370322 | MS.gene064810:CDS | 40.0% | |
| ! | AGTGCTGAATCTCATGATGA+AGG | - | chr3.4:98369732-98369751 | MS.gene064810:intron | 40.0% |
| ! | ATGATTGTGGACTCAAGTTG+AGG | - | chr3.4:98370084-98370103 | MS.gene064810:intron | 40.0% |
| ! | CGATGAGTTTGGTGATTGAA+TGG | + | chr3.4:98370399-98370418 | None:intergenic | 40.0% |
| ! | TAACGACCCTACTCTCTTTT+GGG | - | chr3.4:98369075-98369094 | MS.gene064810:intron | 40.0% |
| ! | TGTCCCTTAAGCCAATGTTT+TGG | + | chr3.4:98370765-98370784 | None:intergenic | 40.0% |
| ! | TTAACGACCCTACTCTCTTT+TGG | - | chr3.4:98369074-98369093 | MS.gene064810:intron | 40.0% |
| ! | TTGGTGATTGAATGGCTCAA+TGG | + | chr3.4:98370391-98370410 | None:intergenic | 40.0% |
| !! | CCTATTTGGCTTTGGATAGT+TGG | + | chr3.4:98370460-98370479 | None:intergenic | 40.0% |
| !! | TACAAAAGAAGCGCTTGTAG+TGG | + | chr3.4:98369448-98369467 | None:intergenic | 40.0% |
| !! | TCTCAGCTCTGAAGAAAGAA+TGG | - | chr3.4:98370584-98370603 | MS.gene064810:CDS | 40.0% |
| !! | TGGACTCAAGTTGAGGATTT+AGG | - | chr3.4:98370091-98370110 | MS.gene064810:intron | 40.0% |
| AAGGAGAAGCGGTTATGAGA+AGG | - | chr3.4:98369295-98369314 | MS.gene064810:CDS | 45.0% | |
| AGCGGTTTCTCCTTCATCAT+TGG | - | chr3.4:98370347-98370366 | MS.gene064810:CDS | 45.0% | |
| CAATCACCAAACTCATCGCT+TGG | - | chr3.4:98370401-98370420 | MS.gene064810:CDS | 45.0% | |
| CATAGGATTCCTGTGATTGG+TGG | - | chr3.4:98369233-98369252 | MS.gene064810:intron | 45.0% | |
| GAGTGTCCCAAAAGAGAGTA+GGG | + | chr3.4:98369084-98369103 | None:intergenic | 45.0% | |
| GGGTTCAGAAGTTCTCAAAG+GGG | - | chr3.4:98370305-98370324 | MS.gene064810:CDS | 45.0% | |
| GTGGAAGTTACAAGGAGAAG+CGG | - | chr3.4:98369284-98369303 | MS.gene064810:CDS | 45.0% | |
| GTTGTGCAGACAGAAGAACT+CGG | - | chr3.4:98370832-98370851 | MS.gene064810:CDS | 45.0% | |
| TTCAGAGCTGAGACTATTCC+AGG | + | chr3.4:98370577-98370596 | None:intergenic | 45.0% | |
| TTGTGCAGACAGAAGAACTC+GGG | - | chr3.4:98370833-98370852 | MS.gene064810:CDS | 45.0% | |
| ! | AGAGTGTCCCAAAAGAGAGT+AGG | + | chr3.4:98369085-98369104 | None:intergenic | 45.0% |
| ! | CCAAAATGATTGGTCAGTCC+TGG | - | chr3.4:98370556-98370575 | MS.gene064810:CDS | 45.0% |
| ! | CCAGGACTGACCAATCATTT+TGG | + | chr3.4:98370559-98370578 | None:intergenic | 45.0% |
| ! | GATTCCTGTGATTGGTGGTA+AGG | - | chr3.4:98369238-98369257 | MS.gene064810:intron | 45.0% |
| ! | GCTAATTCAGGTTTCCACGA+TGG | + | chr3.4:98369678-98369697 | None:intergenic | 45.0% |
| ! | TAGCCACTCCTATTTGGCTT+TGG | + | chr3.4:98370468-98370487 | None:intergenic | 45.0% |
| ! | TCGTCGCTTTCACTTTCTCA+TGG | - | chr3.4:98369105-98369124 | MS.gene064810:intron | 45.0% |
| ! | TGATTTGCACGTTCTCTACG+TGG | - | chr3.4:98369265-98369284 | MS.gene064810:CDS | 45.0% |
| ! | TTTCTGGTAACAGTCCATCG+TGG | - | chr3.4:98369661-98369680 | MS.gene064810:intron | 45.0% |
| !! | AAAAGAAGCGCTTGTAGTGG+TGG | + | chr3.4:98369445-98369464 | None:intergenic | 45.0% |
| !!! | GAAGGAGAAACCGCTTTTTC+TGG | + | chr3.4:98370342-98370361 | None:intergenic | 45.0% |
| !!! | GAGAAACCGCTTTTTCTGGA+TGG | + | chr3.4:98370338-98370357 | None:intergenic | 45.0% |
| !! | AAATAATTGAATTTAAATTA+AGG | - | chr3.4:98369788-98369807 | MS.gene064810:intron | 5.0% |
| !! | AATAATTGAATTTAAATTAA+GGG | - | chr3.4:98369789-98369808 | MS.gene064810:intron | 5.0% |
| AAACTCATCGCTTGGGTAGG+AGG | - | chr3.4:98370409-98370428 | MS.gene064810:CDS | 50.0% | |
| ACCAAACTCATCGCTTGGGT+AGG | - | chr3.4:98370406-98370425 | MS.gene064810:CDS | 50.0% | |
| AGCTCCTTACCACCAATCAC+AGG | + | chr3.4:98369245-98369264 | None:intergenic | 50.0% | |
| GTTAACGACGTCGTTGTGAG+AGG | + | chr3.4:98369059-98369078 | None:intergenic | 50.0% | |
| TCCTACCCAAGCGATGAGTT+TGG | + | chr3.4:98370410-98370429 | None:intergenic | 50.0% | |
| CCTATTTACACCCCCTCACC+AGG | - | chr3.4:98369534-98369553 | MS.gene064810:CDS | 55.0% | |
| GCGGTGAGAAGCAAGAACTC+CGG | - | chr3.4:98368995-98369014 | MS.gene064810:CDS | 55.0% | |
| ! | CCTGGTGAGGGGGTGTAAAT+AGG | + | chr3.4:98369537-98369556 | None:intergenic | 55.0% |
| ACGTCGTTGTGAGAGGCGAG+TGG | + | chr3.4:98369052-98369071 | None:intergenic | 60.0% | |
| CGTCGTTGTGAGAGGCGAGT+GGG | + | chr3.4:98369051-98369070 | None:intergenic | 60.0% | |
| TTGTGAGAGGCGAGTGGGTG+AGG | + | chr3.4:98369046-98369065 | None:intergenic | 60.0% | |
| TTTGCCTTCGTCGTCGTCGC+CGG | + | chr3.4:98369017-98369036 | None:intergenic | 60.0% | |
| AACTCCGGCGACGACGACGA+AGG | - | chr3.4:98369010-98369029 | MS.gene064810:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98368983 | 98370864 | 98368983 | ID=MS.gene064810 |
| chr3.4 | mRNA | 98368983 | 98370864 | 98368983 | ID=MS.gene064810.t1;Parent=MS.gene064810 |
| chr3.4 | exon | 98370707 | 98370864 | 98370707 | ID=MS.gene064810.t1.exon1;Parent=MS.gene064810.t1 |
| chr3.4 | CDS | 98370707 | 98370864 | 98370707 | ID=cds.MS.gene064810.t1;Parent=MS.gene064810.t1 |
| chr3.4 | exon | 98370531 | 98370609 | 98370531 | ID=MS.gene064810.t1.exon2;Parent=MS.gene064810.t1 |
| chr3.4 | CDS | 98370531 | 98370609 | 98370531 | ID=cds.MS.gene064810.t1;Parent=MS.gene064810.t1 |
| chr3.4 | exon | 98370292 | 98370457 | 98370292 | ID=MS.gene064810.t1.exon3;Parent=MS.gene064810.t1 |
| chr3.4 | CDS | 98370292 | 98370457 | 98370292 | ID=cds.MS.gene064810.t1;Parent=MS.gene064810.t1 |
| chr3.4 | exon | 98370094 | 98370192 | 98370094 | ID=MS.gene064810.t1.exon4;Parent=MS.gene064810.t1 |
| chr3.4 | CDS | 98370094 | 98370192 | 98370094 | ID=cds.MS.gene064810.t1;Parent=MS.gene064810.t1 |
| chr3.4 | exon | 98369242 | 98369627 | 98369242 | ID=MS.gene064810.t1.exon5;Parent=MS.gene064810.t1 |
| chr3.4 | CDS | 98369242 | 98369627 | 98369242 | ID=cds.MS.gene064810.t1;Parent=MS.gene064810.t1 |
| chr3.4 | exon | 98368983 | 98369090 | 98368983 | ID=MS.gene064810.t1.exon6;Parent=MS.gene064810.t1 |
| chr3.4 | CDS | 98368983 | 98369090 | 98368983 | ID=cds.MS.gene064810.t1;Parent=MS.gene064810.t1 |
| Gene Sequence |
| Protein sequence |
