Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07448.t1 | XP_013468810.2 | 99.6 | 265 | 1 | 0 | 1 | 265 | 25 | 289 | 2.10E-155 | 558.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07448.t1 | Q949R4 | 63.8 | 265 | 92 | 3 | 3 | 263 | 4 | 268 | 8.9e-102 | 371.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07448.t1 | A0A072VM25 | 99.6 | 265 | 1 | 0 | 1 | 265 | 1 | 265 | 1.5e-155 | 558.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049483 | MS.gene07448 | 0.801216 | 1.00E-48 | -1.69E-46 |
| MS.gene049611 | MS.gene07448 | 0.824812 | 6.59E-54 | -1.69E-46 |
| MS.gene049634 | MS.gene07448 | 0.82326 | 1.52E-53 | -1.69E-46 |
| MS.gene050173 | MS.gene07448 | 0.802319 | 5.94E-49 | -1.69E-46 |
| MS.gene050363 | MS.gene07448 | 0.871543 | 6.31E-67 | -1.69E-46 |
| MS.gene050381 | MS.gene07448 | 0.880218 | 6.58E-70 | -1.69E-46 |
| MS.gene050612 | MS.gene07448 | -0.803309 | 3.71E-49 | -1.69E-46 |
| MS.gene050809 | MS.gene07448 | 0.813677 | 2.27E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene07448 | -0.805929 | 1.05E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene07448 | -0.805403 | 1.36E-49 | -1.69E-46 |
| MS.gene050883 | MS.gene07448 | 0.827926 | 1.19E-54 | -1.69E-46 |
| MS.gene051044 | MS.gene07448 | 0.829139 | 6.09E-55 | -1.69E-46 |
| MS.gene05104 | MS.gene07448 | 0.810748 | 9.88E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene07448 | 0.84432 | 8.13E-59 | -1.69E-46 |
| MS.gene051138 | MS.gene07448 | 0.853025 | 3.14E-61 | -1.69E-46 |
| MS.gene05141 | MS.gene07448 | 0.8131 | 3.04E-51 | -1.69E-46 |
| MS.gene051632 | MS.gene07448 | 0.811452 | 6.95E-51 | -1.69E-46 |
| MS.gene051946 | MS.gene07448 | 0.861803 | 7.94E-64 | -1.69E-46 |
| MS.gene052566 | MS.gene07448 | 0.804872 | 1.75E-49 | -1.69E-46 |
| MS.gene052802 | MS.gene07448 | 0.828569 | 8.36E-55 | -1.69E-46 |
| MS.gene052966 | MS.gene07448 | -0.800625 | 1.32E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene07448 | 0.841084 | 5.89E-58 | -1.69E-46 |
| MS.gene053488 | MS.gene07448 | 0.844286 | 8.31E-59 | -1.69E-46 |
| MS.gene053561 | MS.gene07448 | 0.880928 | 3.66E-70 | -1.69E-46 |
| MS.gene054054 | MS.gene07448 | 0.823859 | 1.10E-53 | -1.69E-46 |
| MS.gene054056 | MS.gene07448 | 0.801297 | 9.62E-49 | -1.69E-46 |
| MS.gene054616 | MS.gene07448 | 0.837948 | 3.85E-57 | -1.69E-46 |
| MS.gene054708 | MS.gene07448 | 0.848166 | 7.29E-60 | -1.69E-46 |
| MS.gene055124 | MS.gene07448 | 0.829131 | 6.11E-55 | -1.69E-46 |
| MS.gene055154 | MS.gene07448 | 0.849482 | 3.14E-60 | -1.69E-46 |
| MS.gene055202 | MS.gene07448 | 0.826431 | 2.72E-54 | -1.69E-46 |
| MS.gene055401 | MS.gene07448 | 0.805904 | 1.07E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene07448 | 0.847764 | 9.40E-60 | -1.69E-46 |
| MS.gene056311 | MS.gene07448 | 0.855334 | 6.77E-62 | -1.69E-46 |
| MS.gene056313 | MS.gene07448 | 0.867539 | 1.27E-65 | -1.69E-46 |
| MS.gene056408 | MS.gene07448 | 0.825226 | 5.26E-54 | -1.69E-46 |
| MS.gene057014 | MS.gene07448 | 0.861817 | 7.86E-64 | -1.69E-46 |
| MS.gene058068 | MS.gene07448 | 0.829346 | 5.42E-55 | -1.69E-46 |
| MS.gene058099 | MS.gene07448 | 0.83152 | 1.59E-55 | -1.69E-46 |
| MS.gene058171 | MS.gene07448 | 0.837197 | 5.99E-57 | -1.69E-46 |
| MS.gene058173 | MS.gene07448 | 0.827049 | 1.94E-54 | -1.69E-46 |
| MS.gene058175 | MS.gene07448 | 0.837705 | 4.44E-57 | -1.69E-46 |
| MS.gene058493 | MS.gene07448 | 0.82025 | 7.57E-53 | -1.69E-46 |
| MS.gene058494 | MS.gene07448 | 0.804273 | 2.34E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene07448 | 0.809811 | 1.57E-50 | -1.69E-46 |
| MS.gene058628 | MS.gene07448 | 0.800114 | 1.68E-48 | -1.69E-46 |
| MS.gene058840 | MS.gene07448 | 0.842737 | 2.15E-58 | -1.69E-46 |
| MS.gene058978 | MS.gene07448 | 0.823273 | 1.51E-53 | -1.69E-46 |
| MS.gene059223 | MS.gene07448 | 0.816172 | 6.34E-52 | -1.69E-46 |
| MS.gene059690 | MS.gene07448 | 0.882 | 1.50E-70 | -1.69E-46 |
| MS.gene059691 | MS.gene07448 | 0.865526 | 5.54E-65 | -1.69E-46 |
| MS.gene059694 | MS.gene07448 | 0.889768 | 1.80E-73 | -1.69E-46 |
| MS.gene059697 | MS.gene07448 | 0.88632 | 3.79E-72 | -1.69E-46 |
| MS.gene059916 | MS.gene07448 | 0.831132 | 1.98E-55 | -1.69E-46 |
| MS.gene059943 | MS.gene07448 | 0.816991 | 4.16E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene07448 | 0.81498 | 1.17E-51 | -1.69E-46 |
| MS.gene06074 | MS.gene07448 | 0.8154 | 9.43E-52 | -1.69E-46 |
| MS.gene060808 | MS.gene07448 | 0.818312 | 2.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07448.t1 | MTR_1g077030 | 99.623 | 265 | 1 | 0 | 1 | 265 | 1 | 265 | 0.0 | 543 |
| MS.gene07448.t1 | MTR_6g064960 | 73.783 | 267 | 67 | 3 | 1 | 265 | 1 | 266 | 2.36e-146 | 410 |
| MS.gene07448.t1 | MTR_6g036660 | 64.921 | 191 | 36 | 2 | 76 | 265 | 9 | 169 | 1.30e-80 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07448.t1 | AT4G15093 | 64.314 | 255 | 87 | 3 | 3 | 253 | 4 | 258 | 2.83e-123 | 352 |
Find 81 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTCTGGCATTTGATTCC+TGG | 0.223358 | 1.2:-63621404 | MS.gene07448:CDS |
| TTCTTGTTATCTCTGGTCAT+TGG | 0.280377 | 1.2:-63622393 | MS.gene07448:CDS |
| TGCAGGAATTGTTTCATCTA+TGG | 0.287643 | 1.2:+63622468 | None:intergenic |
| CTTCCCATTGCATGTGGCTA+TGG | 0.326906 | 1.2:-63621063 | MS.gene07448:CDS |
| CCCTCCTCCTCCCTGGGCTC+TGG | 0.327725 | 1.2:-63621418 | MS.gene07448:CDS |
| TCTTGTTATCTCTGGTCATT+GGG | 0.336206 | 1.2:-63622392 | MS.gene07448:CDS |
| TTCACCCTCTTTGCTAACTT+TGG | 0.341100 | 1.2:+63621702 | None:intergenic |
| AACTTTGGAGCCCCTGGTGC+TGG | 0.357532 | 1.2:+63621717 | None:intergenic |
| ATTGTGATTAACAACGTTAA+CGG | 0.372671 | 1.2:+63622354 | None:intergenic |
| CATGTTATGAGTGGCACTTC+CGG | 0.373240 | 1.2:+63621464 | None:intergenic |
| GAGAAAGCCCTCCTCCTCCC+TGG | 0.379390 | 1.2:-63621425 | MS.gene07448:CDS |
| GATGAGGGTGTTCTAATAAT+CGG | 0.388648 | 1.2:-63621489 | MS.gene07448:CDS |
| TTTGCTAACTTTGGAGCCCC+TGG | 0.388909 | 1.2:+63621711 | None:intergenic |
| AAGGAACTGATCGAAGCATC+TGG | 0.408387 | 1.2:-63621681 | MS.gene07448:CDS |
| GCCAGAGCCCAGGGAGGAGG+AGG | 0.408526 | 1.2:+63621417 | None:intergenic |
| AATGAAACCATCCATGATTT+CGG | 0.409867 | 1.2:-63622334 | MS.gene07448:CDS |
| TCTGCCATTCTTGTTATCTC+TGG | 0.410290 | 1.2:-63622400 | MS.gene07448:CDS |
| TATACCAGTATGTCAACTTT+CGG | 0.414509 | 1.2:-63621574 | MS.gene07448:CDS |
| TCGGTTTCATCAAATAGAAA+TGG | 0.415828 | 1.2:-63621555 | MS.gene07448:CDS |
| AGAACACCCTCATCTTTAAG+AGG | 0.426483 | 1.2:+63621498 | None:intergenic |
| TTCCCATTGCATGTGGCTAT+GGG | 0.428707 | 1.2:-63621062 | MS.gene07448:CDS |
| GGTACTTACCATTATAACTT+AGG | 0.430513 | 1.2:-63621534 | MS.gene07448:CDS |
| GGATGAGCCACTTTCGCATA+TGG | 0.439113 | 1.2:+63621101 | None:intergenic |
| CATGGAAATTCTTGACATCA+TGG | 0.450298 | 1.2:-63622447 | MS.gene07448:CDS |
| CAAGGTTATTCATGAGAGTT+GGG | 0.452153 | 1.2:-63621015 | MS.gene07448:CDS |
| ACTCATAACATGAGAGCAAT+TGG | 0.455156 | 1.2:-63621453 | MS.gene07448:CDS |
| CCAAGGTTATTCATGAGAGT+TGG | 0.456924 | 1.2:-63621016 | MS.gene07448:CDS |
| ATTCATGAGAGTTGGGATAG+TGG | 0.458572 | 1.2:-63621008 | MS.gene07448:CDS |
| TAGGAAAACCACCGAAATCA+TGG | 0.461930 | 1.2:+63622323 | None:intergenic |
| TGATTAACAACGTTAACGGT+TGG | 0.472085 | 1.2:+63622358 | None:intergenic |
| GAAACCGAAAGTTGACATAC+TGG | 0.474557 | 1.2:+63621570 | None:intergenic |
| TGCAATGGGAAGAAATGATC+AGG | 0.474579 | 1.2:+63621074 | None:intergenic |
| AGAAAGCCCTCCTCCTCCCT+GGG | 0.482352 | 1.2:-63621424 | MS.gene07448:CDS |
| CAGCTCAAGTATCCAGCACC+AGG | 0.488701 | 1.2:-63621729 | MS.gene07448:CDS |
| GGAATCAAATGCCAGAGCCC+AGG | 0.488956 | 1.2:+63621407 | None:intergenic |
| CAAACCTTGTACATGCTCCT+AGG | 0.492861 | 1.2:+63622304 | None:intergenic |
| CTCCCATAGCCACATGCAAT+GGG | 0.493902 | 1.2:+63621060 | None:intergenic |
| AATGCCAGAGCCCAGGGAGG+AGG | 0.498803 | 1.2:+63621414 | None:intergenic |
| AGAATGGCAGATGGTCTCTC+AGG | 0.511823 | 1.2:+63622412 | None:intergenic |
| GCTCCCATAGCCACATGCAA+TGG | 0.521180 | 1.2:+63621059 | None:intergenic |
| CATGTGGCTATGGGAGCTGC+TGG | 0.535183 | 1.2:-63621053 | MS.gene07448:CDS |
| CATACTGGTATATCAGCCTC+TGG | 0.544796 | 1.2:+63621585 | None:intergenic |
| GGCTCCAAAGTTAGCAAAGA+GGG | 0.544809 | 1.2:-63621706 | MS.gene07448:CDS |
| GGTGTTCTAATAATCGGATC+CGG | 0.552606 | 1.2:-63621483 | MS.gene07448:CDS |
| CCAACTCTCATGAATAACCT+TGG | 0.556818 | 1.2:+63621016 | None:intergenic |
| AAGAATCTCTCGTCGAAGGA+AGG | 0.559361 | 1.2:-63621377 | MS.gene07448:intron |
| TCATTTCTTCCCATTGCATG+TGG | 0.560813 | 1.2:-63621069 | MS.gene07448:CDS |
| ATTCTTGACATCATGGAAAG+AGG | 0.565403 | 1.2:-63622440 | MS.gene07448:CDS |
| GAAGGCGCCATATGCGAAAG+TGG | 0.568307 | 1.2:-63621108 | MS.gene07448:CDS |
| ATGACCAGAGATAACAAGAA+TGG | 0.569073 | 1.2:+63622396 | None:intergenic |
| GTTTCATCTATGGCTAGTGT+TGG | 0.573056 | 1.2:+63622478 | None:intergenic |
| ATGCGAAAGTGGCTCATCCA+TGG | 0.576625 | 1.2:-63621097 | MS.gene07448:CDS |
| GGAGGAGGAGGGCTTTCTCG+AGG | 0.577926 | 1.2:+63621429 | None:intergenic |
| AGCATCTGGGTTGAGTCGAG+TGG | 0.579096 | 1.2:-63621667 | MS.gene07448:CDS |
| AATAGCTCCTCTTAAAGATG+AGG | 0.581989 | 1.2:-63621505 | MS.gene07448:CDS |
| GATGTCAAGAATTTCCATGC+AGG | 0.582906 | 1.2:+63622451 | None:intergenic |
| AGCTGCTGTGAAACCAAAAG+AGG | 0.584042 | 1.2:+63620971 | None:intergenic |
| GAATCAAATGCCAGAGCCCA+GGG | 0.587952 | 1.2:+63621408 | None:intergenic |
| TGGTGAGAATTCAAAGGCCA+AGG | 0.591154 | 1.2:-63621033 | MS.gene07448:CDS |
| GGGAAGAAATGATCAGGCCA+TGG | 0.597088 | 1.2:+63621080 | None:intergenic |
| GAAACCATCCATGATTTCGG+TGG | 0.597978 | 1.2:-63622331 | MS.gene07448:CDS |
| CATAAATCACTACGAAGAGA+AGG | 0.601560 | 1.2:-63621126 | MS.gene07448:CDS |
| CCAGAGCCCAGGGAGGAGGA+GGG | 0.604544 | 1.2:+63621418 | None:intergenic |
| AGGAACTGATCGAAGCATCT+GGG | 0.606798 | 1.2:-63621680 | MS.gene07448:CDS |
| AAAGTTAGCAAAGAGGGTGA+AGG | 0.608328 | 1.2:-63621700 | MS.gene07448:CDS |
| TTAAAAGAATCTCTCGTCGA+AGG | 0.612211 | 1.2:-63621381 | MS.gene07448:CDS |
| ATAGCTCCTCTTAAAGATGA+GGG | 0.624747 | 1.2:-63621504 | MS.gene07448:CDS |
| TAGATGAAACAATTCCTGCA+TGG | 0.625784 | 1.2:-63622465 | MS.gene07448:CDS |
| AGCTGCTGGTGAGAATTCAA+AGG | 0.626345 | 1.2:-63621039 | MS.gene07448:CDS |
| TGCTCAATGTTCCAGATACG+AGG | 0.635008 | 1.2:-63621150 | MS.gene07448:intron |
| GTGGGCTTGATCATGGAACA+TGG | 0.640571 | 1.2:-63621629 | MS.gene07448:CDS |
| AAAACCACCGAAATCATGGA+TGG | 0.648531 | 1.2:+63622327 | None:intergenic |
| GCTCAAGTATCCAGCACCAG+GGG | 0.654006 | 1.2:-63621727 | MS.gene07448:CDS |
| AGCTCAAGTATCCAGCACCA+GGG | 0.658115 | 1.2:-63621728 | MS.gene07448:CDS |
| GAGATAACAAGAATGGCAGA+TGG | 0.658261 | 1.2:+63622403 | None:intergenic |
| AATTGCTCTCATGTTATGAG+TGG | 0.665609 | 1.2:+63621455 | None:intergenic |
| TCTCATGTTGATGTATCCAG+AGG | 0.674561 | 1.2:-63621601 | MS.gene07448:CDS |
| TCTGGATACATCAACATGAG+AGG | 0.675165 | 1.2:+63621603 | None:intergenic |
| GGGCTCCAAAGTTAGCAAAG+AGG | 0.677936 | 1.2:-63621707 | MS.gene07448:CDS |
| TGGGCTTGATCATGGAACAT+GGG | 0.724784 | 1.2:-63621628 | MS.gene07448:CDS |
| TCAAATGCCAGAGCCCAGGG+AGG | 0.758664 | 1.2:+63621411 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAGATATAAAACAAAAA+TGG | + | chr1.2:63621707-63621726 | None:intergenic | 15.0% |
| !! | CAAGATTTATTCCATTAAAT+GGG | + | chr1.2:63621346-63621365 | None:intergenic | 20.0% |
| ! | AAGAAATTGTAGCAATAGAT+TGG | - | chr1.2:63621413-63621432 | MS.gene07448:CDS | 25.0% |
| ! | ATATGCATACATTACACATT+AGG | - | chr1.2:63621468-63621487 | MS.gene07448:CDS | 25.0% |
| ! | ATTACATCTTGAAATTTGAG+CGG | - | chr1.2:63621272-63621291 | MS.gene07448:intron | 25.0% |
| ! | ATTGTGATTAACAACGTTAA+CGG | + | chr1.2:63621128-63621147 | None:intergenic | 25.0% |
| ! | CCAAGATTTATTCCATTAAA+TGG | + | chr1.2:63621347-63621366 | None:intergenic | 25.0% |
| ! | CCATTTAATGGAATAAATCT+TGG | - | chr1.2:63621344-63621363 | MS.gene07448:intron | 25.0% |
| ! | GGAATCTGAATTAAACAATT+AGG | + | chr1.2:63621551-63621570 | None:intergenic | 25.0% |
| ! | TTTATTCCATTAAATGGGAT+CGG | + | chr1.2:63621341-63621360 | None:intergenic | 25.0% |
| !!! | TTGCTTTTCCTAAGTTATAA+TGG | + | chr1.2:63621956-63621975 | None:intergenic | 25.0% |
| AAAACAAAAATGGACCATTG+TGG | + | chr1.2:63621697-63621716 | None:intergenic | 30.0% | |
| AATGAAACCATCCATGATTT+CGG | - | chr1.2:63621145-63621164 | MS.gene07448:intron | 30.0% | |
| CTATTGAATCATAACTGATC+CGG | - | chr1.2:63621511-63621530 | MS.gene07448:CDS | 30.0% | |
| GATTGGATAAACAAACATTG+AGG | - | chr1.2:63621430-63621449 | MS.gene07448:CDS | 30.0% | |
| GGTACTTACCATTATAACTT+AGG | - | chr1.2:63621945-63621964 | MS.gene07448:intron | 30.0% | |
| TAGCTCTTCAATTGATACTT+AGG | + | chr1.2:63621644-63621663 | None:intergenic | 30.0% | |
| TATACCAGTATGTCAACTTT+CGG | - | chr1.2:63621905-63621924 | MS.gene07448:intron | 30.0% | |
| TATTGAATCATAACTGATCC+GGG | - | chr1.2:63621512-63621531 | MS.gene07448:CDS | 30.0% | |
| TCGGTTTCATCAAATAGAAA+TGG | - | chr1.2:63621924-63621943 | MS.gene07448:intron | 30.0% | |
| TTAATTCAGATTCCGAACTT+TGG | - | chr1.2:63621557-63621576 | MS.gene07448:CDS | 30.0% | |
| TTTCGATTCTCAAACAGATT+TGG | + | chr1.2:63621389-63621408 | None:intergenic | 30.0% | |
| ! | GAAACGTTTTACATATCACA+TGG | - | chr1.2:63620974-63620993 | MS.gene07448:CDS | 30.0% |
| !! | ATAGTTGCTATTTGACAACA+TGG | + | chr1.2:63622171-63622190 | None:intergenic | 30.0% |
| !!! | TTTCGGTATCGATTTGTTTT+TGG | - | chr1.2:63621604-63621623 | MS.gene07448:CDS | 30.0% |
| AAATAGCAACTATAGCGTAG+TGG | - | chr1.2:63622178-63622197 | MS.gene07448:intron | 35.0% | |
| AATAGCTCCTCTTAAAGATG+AGG | - | chr1.2:63621974-63621993 | MS.gene07448:intron | 35.0% | |
| AATTGCTCTCATGTTATGAG+TGG | + | chr1.2:63622027-63622046 | None:intergenic | 35.0% | |
| ACTCATAACATGAGAGCAAT+TGG | - | chr1.2:63622026-63622045 | MS.gene07448:intron | 35.0% | |
| ATAGCTCCTCTTAAAGATGA+GGG | - | chr1.2:63621975-63621994 | MS.gene07448:intron | 35.0% | |
| ATGACCAGAGATAACAAGAA+TGG | + | chr1.2:63621086-63621105 | None:intergenic | 35.0% | |
| ATTCTTGACATCATGGAAAG+AGG | - | chr1.2:63621039-63621058 | MS.gene07448:CDS | 35.0% | |
| CAAGGTTATTCATGAGAGTT+GGG | - | chr1.2:63622464-63622483 | MS.gene07448:CDS | 35.0% | |
| CATAAATCACTACGAAGAGA+AGG | - | chr1.2:63622353-63622372 | MS.gene07448:CDS | 35.0% | |
| CATGGAAATTCTTGACATCA+TGG | - | chr1.2:63621032-63621051 | MS.gene07448:CDS | 35.0% | |
| GAAACTAGAGTCCAATCATT+CGG | + | chr1.2:63621588-63621607 | None:intergenic | 35.0% | |
| GATACTTGAGCTGCAAATAA+AGG | + | chr1.2:63621743-63621762 | None:intergenic | 35.0% | |
| GCATACATTACACATTAGGT+TGG | - | chr1.2:63621472-63621491 | MS.gene07448:CDS | 35.0% | |
| TAGATGAAACAATTCCTGCA+TGG | - | chr1.2:63621014-63621033 | MS.gene07448:CDS | 35.0% | |
| TGATTAACAACGTTAACGGT+TGG | + | chr1.2:63621124-63621143 | None:intergenic | 35.0% | |
| TGCAGGAATTGTTTCATCTA+TGG | + | chr1.2:63621014-63621033 | None:intergenic | 35.0% | |
| TGGACGAAGATAAAAAACGT+GGG | - | chr1.2:63621832-63621851 | MS.gene07448:intron | 35.0% | |
| TTAAAAGAATCTCTCGTCGA+AGG | - | chr1.2:63622098-63622117 | MS.gene07448:intron | 35.0% | |
| TTGTTCTGTGATACGTGATT+TGG | - | chr1.2:63622219-63622238 | MS.gene07448:intron | 35.0% | |
| ! | GAATGATTGGACTCTAGTTT+CGG | - | chr1.2:63621587-63621606 | MS.gene07448:CDS | 35.0% |
| ! | TCTTGTTATCTCTGGTCATT+GGG | - | chr1.2:63621087-63621106 | MS.gene07448:CDS | 35.0% |
| ! | TTCTTGTTATCTCTGGTCAT+TGG | - | chr1.2:63621086-63621105 | MS.gene07448:CDS | 35.0% |
| !! | GATGAGGGTGTTCTAATAAT+CGG | - | chr1.2:63621990-63622009 | MS.gene07448:intron | 35.0% |
| !! | GCTTTTTCTTATGCCTCTTT+TGG | - | chr1.2:63622495-63622514 | MS.gene07448:CDS | 35.0% |
| AAAAAACGTGGGCTTGATCA+TGG | - | chr1.2:63621843-63621862 | MS.gene07448:intron | 40.0% | |
| AAAACCACCGAAATCATGGA+TGG | + | chr1.2:63621155-63621174 | None:intergenic | 40.0% | |
| AAAGTTAGCAAAGAGGGTGA+AGG | - | chr1.2:63621779-63621798 | MS.gene07448:intron | 40.0% | |
| AATAAATCTTGGTTGTGCGC+TGG | - | chr1.2:63621355-63621374 | MS.gene07448:intron | 40.0% | |
| AGAACACCCTCATCTTTAAG+AGG | + | chr1.2:63621984-63622003 | None:intergenic | 40.0% | |
| ATTCATGAGAGTTGGGATAG+TGG | - | chr1.2:63622471-63622490 | MS.gene07448:CDS | 40.0% | |
| CCAACTCTCATGAATAACCT+TGG | + | chr1.2:63622466-63622485 | None:intergenic | 40.0% | |
| CCAAGGTTATTCATGAGAGT+TGG | - | chr1.2:63622463-63622482 | MS.gene07448:CDS | 40.0% | |
| GAAACCGAAAGTTGACATAC+TGG | + | chr1.2:63621912-63621931 | None:intergenic | 40.0% | |
| GAGATAACAAGAATGGCAGA+TGG | + | chr1.2:63621079-63621098 | None:intergenic | 40.0% | |
| GATGTCAAGAATTTCCATGC+AGG | + | chr1.2:63621031-63621050 | None:intergenic | 40.0% | |
| GGTGTTCTAATAATCGGATC+CGG | - | chr1.2:63621996-63622015 | MS.gene07448:intron | 40.0% | |
| GTGATTTATGTCCTCGTATC+TGG | + | chr1.2:63622343-63622362 | None:intergenic | 40.0% | |
| GTGGACGAAGATAAAAAACG+TGG | - | chr1.2:63621831-63621850 | MS.gene07448:intron | 40.0% | |
| GTTTCATCTATGGCTAGTGT+TGG | + | chr1.2:63621004-63621023 | None:intergenic | 40.0% | |
| TAGGAAAACCACCGAAATCA+TGG | + | chr1.2:63621159-63621178 | None:intergenic | 40.0% | |
| TCATTTCTTCCCATTGCATG+TGG | - | chr1.2:63622410-63622429 | MS.gene07448:CDS | 40.0% | |
| TCTCATGTTGATGTATCCAG+AGG | - | chr1.2:63621878-63621897 | MS.gene07448:intron | 40.0% | |
| TCTGGATACATCAACATGAG+AGG | + | chr1.2:63621879-63621898 | None:intergenic | 40.0% | |
| TGAGCTGCAAATAAAGGAAC+AGG | + | chr1.2:63621737-63621756 | None:intergenic | 40.0% | |
| TGCAATGGGAAGAAATGATC+AGG | + | chr1.2:63622408-63622427 | None:intergenic | 40.0% | |
| TTCACCCTCTTTGCTAACTT+TGG | + | chr1.2:63621780-63621799 | None:intergenic | 40.0% | |
| ! | ATGATTTCGGTGGTTTTCCT+AGG | - | chr1.2:63621158-63621177 | MS.gene07448:intron | 40.0% |
| ! | GACGAGAGATTCTTTTAACC+AGG | + | chr1.2:63622096-63622115 | None:intergenic | 40.0% |
| ! | GTTTTCCAATCTCTCCACAA+TGG | - | chr1.2:63621680-63621699 | MS.gene07448:CDS | 40.0% |
| ! | TCTGCCATTCTTGTTATCTC+TGG | - | chr1.2:63621079-63621098 | MS.gene07448:CDS | 40.0% |
| !! | TTTTCCTAGGAGCATGTACA+AGG | - | chr1.2:63621171-63621190 | MS.gene07448:intron | 40.0% |
| AAGAATCTCTCGTCGAAGGA+AGG | - | chr1.2:63622102-63622121 | MS.gene07448:intron | 45.0% | |
| ACTAGAGTCCAATCATTCGG+TGG | + | chr1.2:63621585-63621604 | None:intergenic | 45.0% | |
| AGCTGCTGGTGAGAATTCAA+AGG | - | chr1.2:63622440-63622459 | MS.gene07448:CDS | 45.0% | |
| AGCTGCTGTGAAACCAAAAG+AGG | + | chr1.2:63622511-63622530 | None:intergenic | 45.0% | |
| ATGGACCATTGTGGAGAGAT+TGG | + | chr1.2:63621688-63621707 | None:intergenic | 45.0% | |
| CAAACCTTGTACATGCTCCT+AGG | + | chr1.2:63621178-63621197 | None:intergenic | 45.0% | |
| CATACTGGTATATCAGCCTC+TGG | + | chr1.2:63621897-63621916 | None:intergenic | 45.0% | |
| CATGTTATGAGTGGCACTTC+CGG | + | chr1.2:63622018-63622037 | None:intergenic | 45.0% | |
| GAAACCATCCATGATTTCGG+TGG | - | chr1.2:63621148-63621167 | MS.gene07448:intron | 45.0% | |
| GGCTCCAAAGTTAGCAAAGA+GGG | - | chr1.2:63621773-63621792 | MS.gene07448:intron | 45.0% | |
| GTGTAGCCGATCCCATTTAA+TGG | - | chr1.2:63621332-63621351 | MS.gene07448:intron | 45.0% | |
| TGCTCAATGTTCCAGATACG+AGG | - | chr1.2:63622329-63622348 | MS.gene07448:CDS | 45.0% | |
| TGGGCTTGATCATGGAACAT+GGG | - | chr1.2:63621851-63621870 | MS.gene07448:intron | 45.0% | |
| TGGTGAGAATTCAAAGGCCA+AGG | - | chr1.2:63622446-63622465 | MS.gene07448:CDS | 45.0% | |
| TGTTGTCAAACTGCAGCTAG+TGG | - | chr1.2:63622249-63622268 | MS.gene07448:intron | 45.0% | |
| TTAGGCCATCTTTGCTTACC+CGG | + | chr1.2:63621533-63621552 | None:intergenic | 45.0% | |
| TTCCCATTGCATGTGGCTAT+GGG | - | chr1.2:63622417-63622436 | MS.gene07448:CDS | 45.0% | |
| ! | AAGGAACTGATCGAAGCATC+TGG | - | chr1.2:63621798-63621817 | MS.gene07448:intron | 45.0% |
| ! | AGGAACTGATCGAAGCATCT+GGG | - | chr1.2:63621799-63621818 | MS.gene07448:intron | 45.0% |
| ! | CATTCGGTGGAACCAAAGTT+CGG | + | chr1.2:63621572-63621591 | None:intergenic | 45.0% |
| ! | CTTTGGTTCCACCGAATGAT+TGG | - | chr1.2:63621574-63621593 | MS.gene07448:CDS | 45.0% |
| AGAATGGCAGATGGTCTCTC+AGG | + | chr1.2:63621070-63621089 | None:intergenic | 50.0% | |
| AGCTCAAGTATCCAGCACCA+GGG | - | chr1.2:63621751-63621770 | MS.gene07448:intron | 50.0% | |
| ATGCGAAAGTGGCTCATCCA+TGG | - | chr1.2:63622382-63622401 | MS.gene07448:CDS | 50.0% | |
| CTCCCATAGCCACATGCAAT+GGG | + | chr1.2:63622422-63622441 | None:intergenic | 50.0% | |
| CTGATCCGGGTAAGCAAAGA+TGG | - | chr1.2:63621525-63621544 | MS.gene07448:CDS | 50.0% | |
| CTTCCCATTGCATGTGGCTA+TGG | - | chr1.2:63622416-63622435 | MS.gene07448:CDS | 50.0% | |
| GAATCAAATGCCAGAGCCCA+GGG | + | chr1.2:63622074-63622093 | None:intergenic | 50.0% | |
| GGGAAGAAATGATCAGGCCA+TGG | + | chr1.2:63622402-63622421 | None:intergenic | 50.0% | |
| GGGCTCCAAAGTTAGCAAAG+AGG | - | chr1.2:63621772-63621791 | MS.gene07448:intron | 50.0% | |
| GTGGGCTTGATCATGGAACA+TGG | - | chr1.2:63621850-63621869 | MS.gene07448:intron | 50.0% | |
| ! | GGATGAGCCACTTTCGCATA+TGG | + | chr1.2:63622381-63622400 | None:intergenic | 50.0% |
| !! | TTTGCTAACTTTGGAGCCCC+TGG | + | chr1.2:63621771-63621790 | None:intergenic | 50.0% |
| CAGCTCAAGTATCCAGCACC+AGG | - | chr1.2:63621750-63621769 | MS.gene07448:intron | 55.0% | |
| GCTCAAGTATCCAGCACCAG+GGG | - | chr1.2:63621752-63621771 | MS.gene07448:intron | 55.0% | |
| GCTCCCATAGCCACATGCAA+TGG | + | chr1.2:63622423-63622442 | None:intergenic | 55.0% | |
| GGAATCAAATGCCAGAGCCC+AGG | + | chr1.2:63622075-63622094 | None:intergenic | 55.0% | |
| ! | AGCATCTGGGTTGAGTCGAG+TGG | - | chr1.2:63621812-63621831 | MS.gene07448:intron | 55.0% |
| ! | GGGCTCTGGCATTTGATTCC+TGG | - | chr1.2:63622075-63622094 | MS.gene07448:intron | 55.0% |
| !! | GAAGGCGCCATATGCGAAAG+TGG | - | chr1.2:63622371-63622390 | MS.gene07448:CDS | 55.0% |
| AGAAAGCCCTCCTCCTCCCT+GGG | - | chr1.2:63622055-63622074 | MS.gene07448:intron | 60.0% | |
| CATGTGGCTATGGGAGCTGC+TGG | - | chr1.2:63622426-63622445 | MS.gene07448:CDS | 60.0% | |
| TCAAATGCCAGAGCCCAGGG+AGG | + | chr1.2:63622071-63622090 | None:intergenic | 60.0% | |
| !! | AACTTTGGAGCCCCTGGTGC+TGG | + | chr1.2:63621765-63621784 | None:intergenic | 60.0% |
| AATGCCAGAGCCCAGGGAGG+AGG | + | chr1.2:63622068-63622087 | None:intergenic | 65.0% | |
| GAGAAAGCCCTCCTCCTCCC+TGG | - | chr1.2:63622054-63622073 | MS.gene07448:intron | 65.0% | |
| GGAGGAGGAGGGCTTTCTCG+AGG | + | chr1.2:63622053-63622072 | None:intergenic | 65.0% | |
| CCAGAGCCCAGGGAGGAGGA+GGG | + | chr1.2:63622064-63622083 | None:intergenic | 70.0% | |
| CCCTCCTCCTCCCTGGGCTC+TGG | - | chr1.2:63622061-63622080 | MS.gene07448:intron | 75.0% | |
| GCCAGAGCCCAGGGAGGAGG+AGG | + | chr1.2:63622065-63622084 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 63620962 | 63622539 | 63620962 | ID=MS.gene07448 |
| chr1.2 | mRNA | 63620962 | 63622539 | 63620962 | ID=MS.gene07448.t1;Parent=MS.gene07448 |
| chr1.2 | exon | 63622309 | 63622539 | 63622309 | ID=MS.gene07448.t1.exon1;Parent=MS.gene07448.t1 |
| chr1.2 | CDS | 63622309 | 63622539 | 63622309 | ID=cds.MS.gene07448.t1;Parent=MS.gene07448.t1 |
| chr1.2 | exon | 63621378 | 63621748 | 63621378 | ID=MS.gene07448.t1.exon2;Parent=MS.gene07448.t1 |
| chr1.2 | CDS | 63621378 | 63621748 | 63621378 | ID=cds.MS.gene07448.t1;Parent=MS.gene07448.t1 |
| chr1.2 | exon | 63620962 | 63621157 | 63620962 | ID=MS.gene07448.t1.exon3;Parent=MS.gene07448.t1 |
| chr1.2 | CDS | 63620962 | 63621157 | 63620962 | ID=cds.MS.gene07448.t1;Parent=MS.gene07448.t1 |
| Gene Sequence |
| Protein sequence |
