Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20742.t1 | XP_003591514.1 | 98 | 305 | 6 | 0 | 48 | 352 | 93 | 397 | 3.50E-169 | 604.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20742.t1 | Q8LB72 | 76.7 | 305 | 67 | 1 | 48 | 352 | 90 | 390 | 7.5e-136 | 485.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20742.t1 | G7IF46 | 98.0 | 305 | 6 | 0 | 48 | 352 | 93 | 397 | 2.5e-169 | 604.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene20742 | 0.800886 | 1.17E-48 | -1.69E-46 |
| MS.gene049217 | MS.gene20742 | 0.817985 | 2.48E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene20742 | 0.840281 | 9.56E-58 | -1.69E-46 |
| MS.gene049232 | MS.gene20742 | 0.815656 | 8.27E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene20742 | 0.847786 | 9.28E-60 | -1.69E-46 |
| MS.gene049320 | MS.gene20742 | 0.823137 | 1.63E-53 | -1.69E-46 |
| MS.gene049627 | MS.gene20742 | 0.854999 | 8.47E-62 | -1.69E-46 |
| MS.gene05010 | MS.gene20742 | 0.832383 | 9.76E-56 | -1.69E-46 |
| MS.gene050163 | MS.gene20742 | 0.817551 | 3.11E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene20742 | 0.811262 | 7.65E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene20742 | 0.833259 | 5.91E-56 | -1.69E-46 |
| MS.gene050504 | MS.gene20742 | 0.818681 | 1.73E-52 | -1.69E-46 |
| MS.gene050518 | MS.gene20742 | 0.836946 | 6.95E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene20742 | 0.803351 | 3.63E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene20742 | 0.800026 | 1.75E-48 | -1.69E-46 |
| MS.gene050699 | MS.gene20742 | 0.805584 | 1.24E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene20742 | 0.810194 | 1.30E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene20742 | 0.835408 | 1.71E-56 | -1.69E-46 |
| MS.gene05087 | MS.gene20742 | 0.817136 | 3.86E-52 | -1.69E-46 |
| MS.gene050904 | MS.gene20742 | 0.803 | 4.30E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene20742 | 0.807115 | 5.92E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene20742 | 0.815131 | 1.08E-51 | -1.69E-46 |
| MS.gene051387 | MS.gene20742 | 0.824094 | 9.73E-54 | -1.69E-46 |
| MS.gene051551 | MS.gene20742 | 0.80908 | 2.26E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene20742 | 0.803375 | 3.59E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene20742 | 0.822333 | 2.51E-53 | -1.69E-46 |
| MS.gene052486 | MS.gene20742 | 0.830485 | 2.86E-55 | -1.69E-46 |
| MS.gene052605 | MS.gene20742 | 0.822071 | 2.88E-53 | -1.69E-46 |
| MS.gene052670 | MS.gene20742 | 0.820006 | 8.62E-53 | -1.69E-46 |
| MS.gene052966 | MS.gene20742 | 0.822524 | 2.26E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene20742 | 0.830995 | 2.15E-55 | -1.69E-46 |
| MS.gene053213 | MS.gene20742 | 0.841497 | 4.58E-58 | -1.69E-46 |
| MS.gene053286 | MS.gene20742 | 0.842665 | 2.25E-58 | -1.69E-46 |
| MS.gene053574 | MS.gene20742 | 0.818603 | 1.80E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene20742 | 0.832096 | 1.15E-55 | -1.69E-46 |
| MS.gene054600 | MS.gene20742 | 0.848929 | 4.48E-60 | -1.69E-46 |
| MS.gene054642 | MS.gene20742 | 0.82418 | 9.28E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene20742 | 0.817407 | 3.35E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene20742 | 0.825211 | 5.30E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene20742 | 0.816765 | 4.67E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene20742 | 0.805038 | 1.62E-49 | -1.69E-46 |
| MS.gene055634 | MS.gene20742 | 0.800463 | 1.42E-48 | -1.69E-46 |
| MS.gene055636 | MS.gene20742 | 0.811745 | 6.00E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene20742 | 0.816901 | 4.35E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene20742 | 0.818837 | 1.59E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene20742 | 0.802732 | 4.88E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene20742 | 0.810594 | 1.07E-50 | -1.69E-46 |
| MS.gene056409 | MS.gene20742 | 0.8194 | 1.18E-52 | -1.69E-46 |
| MS.gene056449 | MS.gene20742 | 0.811529 | 6.69E-51 | -1.69E-46 |
| MS.gene056510 | MS.gene20742 | 0.824798 | 6.64E-54 | -1.69E-46 |
| MS.gene056610 | MS.gene20742 | 0.801824 | 7.50E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene20742 | 0.82943 | 5.17E-55 | -1.69E-46 |
| MS.gene056692 | MS.gene20742 | 0.813083 | 3.06E-51 | -1.69E-46 |
| MS.gene056898 | MS.gene20742 | 0.814838 | 1.26E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene20742 | 0.809297 | 2.03E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene20742 | 0.836082 | 1.15E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene20742 | 0.826031 | 3.39E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene20742 | 0.808074 | 3.70E-50 | -1.69E-46 |
| MS.gene058719 | MS.gene20742 | 0.818121 | 2.31E-52 | -1.69E-46 |
| MS.gene058773 | MS.gene20742 | 0.870887 | 1.04E-66 | -1.69E-46 |
| MS.gene059022 | MS.gene20742 | 0.818254 | 2.16E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene20742 | 0.811515 | 6.74E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene20742 | 0.817051 | 4.03E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene20742 | 0.824542 | 7.63E-54 | -1.69E-46 |
| MS.gene059801 | MS.gene20742 | 0.831437 | 1.67E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene20742 | 0.823896 | 1.08E-53 | -1.69E-46 |
| MS.gene06092 | MS.gene20742 | 0.809779 | 1.60E-50 | -1.69E-46 |
| MS.gene061134 | MS.gene20742 | 0.814752 | 1.31E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene20742 | 0.80538 | 1.37E-49 | -1.69E-46 |
| MS.gene061171 | MS.gene20742 | 0.858787 | 6.48E-63 | -1.69E-46 |
| MS.gene061200 | MS.gene20742 | 0.808995 | 2.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20742.t1 | MTR_1g088420 | 98.033 | 305 | 6 | 0 | 48 | 352 | 93 | 397 | 0.0 | 624 |
| MS.gene20742.t1 | MTR_3g108700 | 36.364 | 308 | 166 | 8 | 60 | 349 | 83 | 378 | 8.41e-50 | 176 |
| MS.gene20742.t1 | MTR_4g036495 | 30.412 | 194 | 121 | 4 | 74 | 266 | 38 | 218 | 7.70e-19 | 88.6 |
| MS.gene20742.t1 | MTR_4g011370 | 27.273 | 297 | 175 | 9 | 66 | 344 | 6 | 279 | 3.09e-18 | 86.3 |
| MS.gene20742.t1 | MTR_4g011370 | 26.936 | 297 | 176 | 8 | 66 | 344 | 6 | 279 | 3.22e-18 | 86.3 |
| MS.gene20742.t1 | MTR_4g011370 | 26.897 | 290 | 185 | 6 | 66 | 344 | 6 | 279 | 4.98e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20742.t1 | AT2G47590 | 76.821 | 302 | 66 | 1 | 48 | 349 | 90 | 387 | 2.82e-166 | 472 |
| MS.gene20742.t1 | AT5G24850 | 38.699 | 292 | 160 | 8 | 65 | 349 | 73 | 352 | 1.15e-56 | 194 |
| MS.gene20742.t1 | AT3G15620 | 28.041 | 296 | 190 | 7 | 64 | 348 | 15 | 298 | 8.44e-20 | 91.3 |
| MS.gene20742.t1 | AT3G15620 | 28.041 | 296 | 190 | 7 | 64 | 348 | 15 | 298 | 8.47e-20 | 90.5 |
| MS.gene20742.t1 | AT4G25290 | 28.293 | 205 | 126 | 6 | 66 | 266 | 28 | 215 | 1.98e-14 | 75.1 |
Find 105 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAATTGGCGAAGGAAAT+TGG | 0.181084 | 1.2:+66175916 | MS.gene20742:CDS |
| GAGGATATGCCTTCAAATTA+TGG | 0.232389 | 1.2:+66176090 | MS.gene20742:CDS |
| TCAACCAAACAAGGGGTTTA+AGG | 0.252150 | 1.2:+66177051 | MS.gene20742:CDS |
| AGTAGGACGGTGAGGGATTA+AGG | 0.295386 | 1.2:-66175605 | None:intergenic |
| CCTCCTGTCATGGAAGAATT+AGG | 0.313996 | 1.2:-66176977 | None:intergenic |
| TAGGGATAGAGTTCAGAAAT+TGG | 0.314960 | 1.2:+66176119 | MS.gene20742:CDS |
| TTGAATCGGTTTCGGATCTT+AGG | 0.318994 | 1.2:+66175830 | MS.gene20742:CDS |
| TGGGAAGCCGGAGACGGTTT+TGG | 0.320562 | 1.2:+66175894 | MS.gene20742:CDS |
| TGAGGCTTTGGATCAACTTA+AGG | 0.322436 | 1.2:+66176158 | MS.gene20742:CDS |
| AAGGAAAACTATTGAGGCTT+TGG | 0.339052 | 1.2:+66176146 | MS.gene20742:CDS |
| CCATCCTTAAACCCCTTGTT+TGG | 0.346676 | 1.2:-66177055 | None:intergenic |
| TTGAATTGGCGAAGGAAATT+GGG | 0.347653 | 1.2:+66175917 | MS.gene20742:CDS |
| TGGTGATATTCCTACTTTGA+TGG | 0.349316 | 1.2:+66176209 | MS.gene20742:CDS |
| TGAGGATTTGCCGTTTAGTT+TGG | 0.357273 | 1.2:+66176068 | MS.gene20742:CDS |
| GATTATGGGAAATCTTCATC+TGG | 0.364632 | 1.2:+66175769 | MS.gene20742:CDS |
| CTTCTTCCGCCGCTGCTCTT+CGG | 0.373965 | 1.2:+66175632 | MS.gene20742:CDS |
| GAGGCTTTGGATCAACTTAA+GGG | 0.374049 | 1.2:+66176159 | MS.gene20742:CDS |
| TTCGGAGAACCGCCATTGTT+TGG | 0.378423 | 1.2:+66175650 | MS.gene20742:CDS |
| GGATCTTAGGAAGAATCTTA+AGG | 0.401605 | 1.2:+66175843 | MS.gene20742:CDS |
| GGGGCACAAGATAGTATATA+TGG | 0.403980 | 1.2:+66177076 | MS.gene20742:CDS |
| TCATCTGGGTTTGATAAAAC+AGG | 0.408572 | 1.2:+66175784 | MS.gene20742:CDS |
| AGATGGAGGAGAAGATTGAA+GGG | 0.424911 | 1.2:+66175986 | MS.gene20742:CDS |
| ATAAACAGGTAAAACAGAAA+TGG | 0.427712 | 1.2:-66175731 | None:intergenic |
| CGGATCTTGTGGTGAGAGTT+GGG | 0.432143 | 1.2:+66175875 | MS.gene20742:CDS |
| GCAGGATCAAAACAATAAAC+AGG | 0.432831 | 1.2:-66175745 | None:intergenic |
| CGAAGAGCAGCGGCGGAAGA+AGG | 0.444187 | 1.2:-66175631 | None:intergenic |
| AGGAGAGTGGTGATTTGAGA+GGG | 0.452904 | 1.2:-66175585 | None:intergenic |
| ATTCCTACTTTGATGGACCT+TGG | 0.462040 | 1.2:+66176216 | MS.gene20742:CDS |
| GAGTTCAGAAATTGGAGATA+AGG | 0.462142 | 1.2:+66176127 | MS.gene20742:CDS |
| GGCATATCCTCCAAACTAAA+CGG | 0.469033 | 1.2:-66176078 | None:intergenic |
| CTAAAACCACCATAATTTGA+AGG | 0.471185 | 1.2:-66176099 | None:intergenic |
| AATTTCTCCATGGTTGGCAA+TGG | 0.472113 | 1.2:+66177117 | MS.gene20742:CDS |
| GAAGGAAATTGGGGCGGATG+CGG | 0.473415 | 1.2:+66175927 | MS.gene20742:CDS |
| ATTTCTCCATGGTTGGCAAT+GGG | 0.474742 | 1.2:+66177118 | MS.gene20742:CDS |
| AAGGAGAGTGGTGATTTGAG+AGG | 0.475617 | 1.2:-66175586 | None:intergenic |
| AAGATGGAGGAGAAGATTGA+AGG | 0.477202 | 1.2:+66175985 | MS.gene20742:CDS |
| ATGCAAAATTTCTCCATGGT+TGG | 0.479998 | 1.2:+66177111 | MS.gene20742:CDS |
| GAAGATGAAAGAGGAGAATG+TGG | 0.481224 | 1.2:+66176008 | MS.gene20742:CDS |
| GATGAAGTAAAGGTTAATTA+CGG | 0.481650 | 1.2:+66173709 | MS.gene20742:CDS |
| TTCTCATGATGAGGTGAAGA+TGG | 0.481763 | 1.2:+66175969 | MS.gene20742:CDS |
| CCAAACAAGGGGTTTAAGGA+TGG | 0.482113 | 1.2:+66177055 | MS.gene20742:CDS |
| ACAGAGGCTTAAAAGATTTG+CGG | 0.483489 | 1.2:+66177015 | MS.gene20742:CDS |
| GGATTTGCCGTTTAGTTTGG+AGG | 0.485893 | 1.2:+66176071 | MS.gene20742:CDS |
| AATTCAACCAAAACCGTCTC+CGG | 0.486723 | 1.2:-66175901 | None:intergenic |
| TCGGATCTTGTGGTGAGAGT+TGG | 0.490430 | 1.2:+66175874 | MS.gene20742:CDS |
| AGGAAGAATCTTAAGGCAAG+AGG | 0.500841 | 1.2:+66175850 | MS.gene20742:CDS |
| TTCAGTCTCCCCTCCTGTCA+TGG | 0.502535 | 1.2:-66176987 | None:intergenic |
| CATGAACACGAAGATCATTA+CGG | 0.504071 | 1.2:-66175675 | None:intergenic |
| GGAGATAAGGAAAACTATTG+AGG | 0.512912 | 1.2:+66176140 | MS.gene20742:CDS |
| ACATCTGGGAGCGCACCTGC+TGG | 0.518039 | 1.2:-66177185 | None:intergenic |
| CAAAAGTCAAGATGAAGTAA+AGG | 0.520299 | 1.2:+66173699 | MS.gene20742:CDS |
| CAGCTCATCAAACATTGCGC+GGG | 0.522820 | 1.2:-66177152 | None:intergenic |
| TGTGGTGAGAGTTGGGAAGC+CGG | 0.527613 | 1.2:+66175882 | MS.gene20742:CDS |
| CGGTGAGGGATTAAGGAGAG+TGG | 0.528589 | 1.2:-66175598 | None:intergenic |
| GGCAAGAGGGTCGGATCTTG+TGG | 0.529684 | 1.2:+66175864 | MS.gene20742:CDS |
| TCTCGTGGTGATGTTCAGCT+TGG | 0.531237 | 1.2:+66176189 | MS.gene20742:CDS |
| TCCATCTGCCACAATGTCAC+AGG | 0.531575 | 1.2:+66176245 | MS.gene20742:CDS |
| AGACCAAGGTCCATCAAAGT+AGG | 0.537251 | 1.2:-66176219 | None:intergenic |
| AAGTACTTTGTATCATGTTG+AGG | 0.538060 | 1.2:+66176050 | MS.gene20742:CDS |
| GTGCCTAATTCTTCCATGAC+AGG | 0.539757 | 1.2:+66176974 | MS.gene20742:CDS |
| ATTATGGGAAATCTTCATCT+GGG | 0.540323 | 1.2:+66175770 | MS.gene20742:CDS |
| ACCTGTGACATTGTGGCAGA+TGG | 0.543053 | 1.2:-66176246 | None:intergenic |
| TTTCATGCAAAATTTCTCCA+TGG | 0.544798 | 1.2:+66177107 | MS.gene20742:CDS |
| GAAGATTTCCCATAATCAGC+AGG | 0.545258 | 1.2:-66175763 | None:intergenic |
| CTCATCAAACATTGCGCGGG+GGG | 0.548029 | 1.2:-66177149 | None:intergenic |
| AGGCATCCCATTGCCAACCA+TGG | 0.557353 | 1.2:-66177124 | None:intergenic |
| GTGTGAAGCTCAACCAAACA+AGG | 0.558520 | 1.2:+66177042 | MS.gene20742:CDS |
| GAAGAGCAGCGGCGGAAGAA+GGG | 0.560143 | 1.2:-66175630 | None:intergenic |
| GCGGCGGAAGAAGGGTCAGT+AGG | 0.561786 | 1.2:-66175622 | None:intergenic |
| GATTGAAGGGAAGATGAAAG+AGG | 0.562308 | 1.2:+66175999 | MS.gene20742:CDS |
| AGCTGAAGAAAACTGCCAGC+AGG | 0.564000 | 1.2:+66177170 | MS.gene20742:CDS |
| CAAACAAGGGGTTTAAGGAT+GGG | 0.566462 | 1.2:+66177056 | MS.gene20742:CDS |
| TGAATTGGCGAAGGAAATTG+GGG | 0.569351 | 1.2:+66175918 | MS.gene20742:CDS |
| GTCATGGAAGAATTAGGCAC+TGG | 0.572317 | 1.2:-66176971 | None:intergenic |
| CTTAAGGGTCTTCCTTCTCG+TGG | 0.573683 | 1.2:+66176174 | MS.gene20742:CDS |
| TCAGCTCATCAAACATTGCG+CGG | 0.578227 | 1.2:-66177153 | None:intergenic |
| GAGAGTTGGGAAGCCGGAGA+CGG | 0.579515 | 1.2:+66175888 | MS.gene20742:CDS |
| GAAGGGTCAGTAGGACGGTG+AGG | 0.584070 | 1.2:-66175613 | None:intergenic |
| AAACAAGGGGTTTAAGGATG+GGG | 0.584425 | 1.2:+66177057 | MS.gene20742:CDS |
| AGCTCATCAAACATTGCGCG+GGG | 0.598803 | 1.2:-66177151 | None:intergenic |
| GGCGGTTCTCCGAAGAGCAG+CGG | 0.599963 | 1.2:-66175641 | None:intergenic |
| CGGAAGAAGGGTCAGTAGGA+CGG | 0.602620 | 1.2:-66175618 | None:intergenic |
| GATATGCCTTCAAATTATGG+TGG | 0.605212 | 1.2:+66176093 | MS.gene20742:CDS |
| TGCGGTGTATTGTCATAGAG+AGG | 0.606444 | 1.2:+66175945 | MS.gene20742:CDS |
| TAATTCTTCCATGACAGGAG+GGG | 0.608540 | 1.2:+66176979 | MS.gene20742:CDS |
| AAGGGTCAGTAGGACGGTGA+GGG | 0.610539 | 1.2:-66175612 | None:intergenic |
| GAATCTTAAGGCAAGAGGGT+CGG | 0.615487 | 1.2:+66175855 | MS.gene20742:CDS |
| TAGAGAGGTTTCTCATGATG+AGG | 0.616362 | 1.2:+66175960 | MS.gene20742:CDS |
| CTAATTCTTCCATGACAGGA+GGG | 0.619336 | 1.2:+66176978 | MS.gene20742:CDS |
| GGTTCTCCGAAGAGCAGCGG+CGG | 0.624520 | 1.2:-66175638 | None:intergenic |
| CCTAATTCTTCCATGACAGG+AGG | 0.628725 | 1.2:+66176977 | MS.gene20742:CDS |
| ATCATTACGGAACCAAACAA+TGG | 0.638151 | 1.2:-66175662 | None:intergenic |
| GATAATTGAAGACGATAATG+TGG | 0.640598 | 1.2:+66173630 | MS.gene20742:CDS |
| GGAAGAATCTTAAGGCAAGA+GGG | 0.642727 | 1.2:+66175851 | MS.gene20742:CDS |
| GATGAAAGAGGAGAATGTGG+AGG | 0.644433 | 1.2:+66176011 | MS.gene20742:CDS |
| AGCTGAACATCACCACGAGA+AGG | 0.657028 | 1.2:-66176186 | None:intergenic |
| TGGCAGATGGATTAAGACCA+AGG | 0.660136 | 1.2:-66176233 | None:intergenic |
| TCATGATGAGGTGAAGATGG+AGG | 0.660818 | 1.2:+66175972 | MS.gene20742:CDS |
| GTGAAGCTCAACCAAACAAG+GGG | 0.664067 | 1.2:+66177044 | MS.gene20742:CDS |
| TGTGAAGCTCAACCAAACAA+GGG | 0.674233 | 1.2:+66177043 | MS.gene20742:CDS |
| TTGTAATGAACTCAATTGTG+TGG | 0.676300 | 1.2:+66173597 | MS.gene20742:CDS |
| ATTGGCGAAGGAAATTGGGG+CGG | 0.682178 | 1.2:+66175921 | MS.gene20742:CDS |
| GGGAGACTGAAGCACTACAG+AGG | 0.688139 | 1.2:+66176999 | MS.gene20742:CDS |
| GCTCATCAAACATTGCGCGG+GGG | 0.698836 | 1.2:-66177150 | None:intergenic |
| ATTACGGAACCAAACAATGG+CGG | 0.734414 | 1.2:-66175659 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAGTATAAAATGAAT+TGG | - | chr1.2:66174446-66174465 | None:intergenic | 10.0% |
| !! | AATAAAGTATAAAATGAATT+GGG | - | chr1.2:66174445-66174464 | None:intergenic | 10.0% |
| !! | AGAAGAAAAGAAAAAAAAAA+TGG | + | chr1.2:66174976-66174995 | MS.gene20742:intron | 15.0% |
| !! | TAAGAATCAAATAAAACTAA+TGG | - | chr1.2:66173835-66173854 | None:intergenic | 15.0% |
| !! | TTTAAAAACAATCAAAAAGA+CGG | - | chr1.2:66173916-66173935 | None:intergenic | 15.0% |
| !!! | GCTTATATAAAAACATATTT+TGG | + | chr1.2:66173972-66173991 | MS.gene20742:intron | 15.0% |
| !!! | TCTATAATCTGAATATTTTT+CGG | - | chr1.2:66174018-66174037 | None:intergenic | 15.0% |
| !!! | TTGTAATCATAATATTTTCA+TGG | + | chr1.2:66176355-66176374 | MS.gene20742:intron | 15.0% |
| !! | ATATATATCAATGGAAATGA+CGG | - | chr1.2:66174203-66174222 | None:intergenic | 20.0% |
| !! | GAAAAGAAAAAAAAAATGGT+AGG | + | chr1.2:66174980-66174999 | MS.gene20742:intron | 20.0% |
| !! | TCTTTGATTAGATTGTATAT+TGG | + | chr1.2:66176549-66176568 | MS.gene20742:intron | 20.0% |
| !! | TTGAATAATAAGGGTAAATA+TGG | + | chr1.2:66174726-66174745 | MS.gene20742:intron | 20.0% |
| !!! | AAAATGATTTTGAGAGAATT+GGG | + | chr1.2:66174099-66174118 | MS.gene20742:intron | 20.0% |
| !!! | ATGTACAAATGTATTTTATG+TGG | + | chr1.2:66173778-66173797 | MS.gene20742:intron | 20.0% |
| !!! | TAAAATGATTTTGAGAGAAT+TGG | + | chr1.2:66174098-66174117 | MS.gene20742:intron | 20.0% |
| !!! | TCTGATAGTTTTTCTAATTT+TGG | - | chr1.2:66174959-66174978 | None:intergenic | 20.0% |
| !!! | TGAAAAAGAAGATTTTTTGA+AGG | - | chr1.2:66175560-66175579 | None:intergenic | 20.0% |
| !!! | TTATTTTCTCAAATCATTAC+TGG | - | chr1.2:66176411-66176430 | None:intergenic | 20.0% |
| ! | AAACAAAAAAAGTTGGAGAA+TGG | + | chr1.2:66174535-66174554 | MS.gene20742:intron | 25.0% |
| ! | AGATAGAGTAACCAAAAATA+AGG | - | chr1.2:66175214-66175233 | None:intergenic | 25.0% |
| ! | ATAAACAGGTAAAACAGAAA+TGG | - | chr1.2:66175734-66175753 | None:intergenic | 25.0% |
| ! | CATTACTCAATAAAGCTAAT+AGG | - | chr1.2:66176715-66176734 | None:intergenic | 25.0% |
| ! | GATGAAGTAAAGGTTAATTA+CGG | + | chr1.2:66173709-66173728 | MS.gene20742:CDS | 25.0% |
| !! | AGAAATTTTGCATGAAAAGT+TGG | - | chr1.2:66177104-66177123 | None:intergenic | 25.0% |
| !! | AGTGTGATTATTTTCCAAAA+CGG | + | chr1.2:66174405-66174424 | MS.gene20742:intron | 25.0% |
| !! | ATACCTTTTATGAGAAATGT+TGG | + | chr1.2:66176474-66176493 | MS.gene20742:intron | 25.0% |
| !! | TATTGTTTAGGATTAGGATT+AGG | - | chr1.2:66175039-66175058 | None:intergenic | 25.0% |
| !! | TGAATCTGTTGATTAAAAGT+AGG | + | chr1.2:66176766-66176785 | MS.gene20742:intron | 25.0% |
| !!! | ACAGTTAACAACCTTATTTT+TGG | + | chr1.2:66175200-66175219 | MS.gene20742:intron | 25.0% |
| !!! | AGATTTTTTGAAGGTTTTGT+TGG | - | chr1.2:66175551-66175570 | None:intergenic | 25.0% |
| !!! | AGCTTTTGCTTTGAATAATA+AGG | + | chr1.2:66174716-66174735 | MS.gene20742:intron | 25.0% |
| !!! | AGTAATCATCACTTTTTTCA+GGG | - | chr1.2:66175122-66175141 | None:intergenic | 25.0% |
| !!! | CTTATGGAATTCAGTTTTAA+TGG | + | chr1.2:66176589-66176608 | MS.gene20742:intron | 25.0% |
| !!! | GCTTTTGCTTTGAATAATAA+GGG | + | chr1.2:66174717-66174736 | MS.gene20742:intron | 25.0% |
| !!! | TGCTAGTTTTTTGATTGAAT+CGG | + | chr1.2:66175816-66175835 | MS.gene20742:CDS | 25.0% |
| !!! | TTCAAATTATGGTGGTTTTA+GGG | + | chr1.2:66176101-66176120 | MS.gene20742:CDS | 25.0% |
| !!! | TTTGTTTTTTTATGTGAGCT+TGG | - | chr1.2:66174043-66174062 | None:intergenic | 25.0% |
| !!! | TTTTTTGATTGAATCGGTTT+CGG | + | chr1.2:66175822-66175841 | MS.gene20742:CDS | 25.0% |
| AAAAAGCTTTCCTATCACAA+TGG | + | chr1.2:66176673-66176692 | MS.gene20742:intron | 30.0% | |
| AAGTACTTTGTATCATGTTG+AGG | + | chr1.2:66176050-66176069 | MS.gene20742:CDS | 30.0% | |
| AATATATCAGCCATTGTGAT+AGG | - | chr1.2:66176686-66176705 | None:intergenic | 30.0% | |
| ATCAAAAAACTAGCACGATA+AGG | - | chr1.2:66175811-66175830 | None:intergenic | 30.0% | |
| ATGCTTGAAAAATGGAACTT+AGG | - | chr1.2:66176891-66176910 | None:intergenic | 30.0% | |
| ATTATGGGAAATCTTCATCT+GGG | + | chr1.2:66175770-66175789 | MS.gene20742:CDS | 30.0% | |
| CAAAAGTCAAGATGAAGTAA+AGG | + | chr1.2:66173699-66173718 | MS.gene20742:CDS | 30.0% | |
| CATCCTCAATTCAAACAAAA+TGG | + | chr1.2:66175285-66175304 | MS.gene20742:intron | 30.0% | |
| CCTCAACAAACAAAAAAAGT+TGG | + | chr1.2:66174528-66174547 | MS.gene20742:intron | 30.0% | |
| CTAAAACCACCATAATTTGA+AGG | - | chr1.2:66176102-66176121 | None:intergenic | 30.0% | |
| GATAATTGAAGACGATAATG+TGG | + | chr1.2:66173630-66173649 | MS.gene20742:CDS | 30.0% | |
| GATATTAGTATACTACCTTG+AGG | + | chr1.2:66176741-66176760 | MS.gene20742:intron | 30.0% | |
| GTTGGTACTTTAAGCTTATT+GGG | - | chr1.2:66175472-66175491 | None:intergenic | 30.0% | |
| TATCACAATGGCTGATATAT+TGG | + | chr1.2:66176685-66176704 | MS.gene20742:intron | 30.0% | |
| TGTATTTAGACCAAACACAA+AGG | + | chr1.2:66174576-66174595 | MS.gene20742:intron | 30.0% | |
| TTCTAGCAATGCTTGAAAAA+TGG | - | chr1.2:66176899-66176918 | None:intergenic | 30.0% | |
| TTGACAAAAAAAGCTCTGTT+TGG | - | chr1.2:66174875-66174894 | None:intergenic | 30.0% | |
| TTGTAATGAACTCAATTGTG+TGG | + | chr1.2:66173597-66173616 | MS.gene20742:CDS | 30.0% | |
| TTTCATGCAAAATTTCTCCA+TGG | + | chr1.2:66177107-66177126 | MS.gene20742:CDS | 30.0% | |
| TTTGGAAAATAATCACACTC+TGG | - | chr1.2:66174404-66174423 | None:intergenic | 30.0% | |
| ! | AACCACAATTCTAAAGGATT+GGG | + | chr1.2:66174125-66174144 | MS.gene20742:intron | 30.0% |
| ! | ATTAGGATTAGGATTTTGGA+TGG | - | chr1.2:66175028-66175047 | None:intergenic | 30.0% |
| ! | CTTCAAATTATGGTGGTTTT+AGG | + | chr1.2:66176100-66176119 | MS.gene20742:CDS | 30.0% |
| ! | GATAGTAAAGATGGGATTTT+GGG | - | chr1.2:66175439-66175458 | None:intergenic | 30.0% |
| ! | GTGTGATTATTTTCCAAAAC+GGG | + | chr1.2:66174406-66174425 | MS.gene20742:intron | 30.0% |
| ! | TAACCACAATTCTAAAGGAT+TGG | + | chr1.2:66174124-66174143 | MS.gene20742:intron | 30.0% |
| ! | TAGGATTAGGATTAGGATTT+TGG | - | chr1.2:66175032-66175051 | None:intergenic | 30.0% |
| ! | TGATAGTAAAGATGGGATTT+TGG | - | chr1.2:66175440-66175459 | None:intergenic | 30.0% |
| !! | ATGGAATTCAGTTTTAATGG+AGG | + | chr1.2:66176592-66176611 | MS.gene20742:intron | 30.0% |
| !! | GTTCCATTTTGTTTGAATTG+AGG | - | chr1.2:66175291-66175310 | None:intergenic | 30.0% |
| !! | TGGAATTCAGTTTTAATGGA+GGG | + | chr1.2:66176593-66176612 | MS.gene20742:intron | 30.0% |
| !!! | ACTTTTTTTGTTTGTTGAGG+TGG | - | chr1.2:66174528-66174547 | None:intergenic | 30.0% |
| !!! | AGAGCTAAAAGCTCTTTTTT+TGG | + | chr1.2:66174918-66174937 | MS.gene20742:intron | 30.0% |
| !!! | CCAACTTTTTTTGTTTGTTG+AGG | - | chr1.2:66174531-66174550 | None:intergenic | 30.0% |
| !!! | CTTTTTTTGTTTGTTGAGGT+GGG | - | chr1.2:66174527-66174546 | None:intergenic | 30.0% |
| !!! | GAGCTAAAAGCTCTTTTTTT+GGG | + | chr1.2:66174919-66174938 | MS.gene20742:intron | 30.0% |
| !!! | GAGTAATCATCACTTTTTTC+AGG | - | chr1.2:66175123-66175142 | None:intergenic | 30.0% |
| !!! | TTTCTAATTTTGGCTCTGTT+TGG | - | chr1.2:66174949-66174968 | None:intergenic | 30.0% |
| !!! | TTTTGAAGGTTTTGTTGGAA+GGG | - | chr1.2:66175546-66175565 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGGTTTTGTTGGA+AGG | - | chr1.2:66175547-66175566 | None:intergenic | 30.0% |
| AACACTCATACACATTTGCT+AGG | + | chr1.2:66174294-66174313 | MS.gene20742:intron | 35.0% | |
| AAGGAAAACTATTGAGGCTT+TGG | + | chr1.2:66176146-66176165 | MS.gene20742:CDS | 35.0% | |
| AATGTGCGTGTGTATTGTTT+AGG | - | chr1.2:66175051-66175070 | None:intergenic | 35.0% | |
| ACAGAGGCTTAAAAGATTTG+CGG | + | chr1.2:66177015-66177034 | MS.gene20742:CDS | 35.0% | |
| ACGAGCTTATAGCTTATTTC+AGG | - | chr1.2:66174827-66174846 | None:intergenic | 35.0% | |
| ACTTGATTGATATCTGTGTG+TGG | + | chr1.2:66176811-66176830 | MS.gene20742:intron | 35.0% | |
| ACTTGTCGCCTTTCAAAATT+GGG | - | chr1.2:66174172-66174191 | None:intergenic | 35.0% | |
| ATCAACAGATTCAAACCTCA+AGG | - | chr1.2:66176759-66176778 | None:intergenic | 35.0% | |
| ATCATTACGGAACCAAACAA+TGG | - | chr1.2:66175665-66175684 | None:intergenic | 35.0% | |
| ATGCAAAATTTCTCCATGGT+TGG | + | chr1.2:66177111-66177130 | MS.gene20742:CDS | 35.0% | |
| CATGAACACGAAGATCATTA+CGG | - | chr1.2:66175678-66175697 | None:intergenic | 35.0% | |
| CCACCAACATTTCTCATAAA+AGG | - | chr1.2:66176480-66176499 | None:intergenic | 35.0% | |
| CGTCAACAGTGAATCTATAT+TGG | + | chr1.2:66176926-66176945 | MS.gene20742:intron | 35.0% | |
| CTTGATTGATATCTGTGTGT+GGG | + | chr1.2:66176812-66176831 | MS.gene20742:intron | 35.0% | |
| GAGGATATGCCTTCAAATTA+TGG | + | chr1.2:66176090-66176109 | MS.gene20742:CDS | 35.0% | |
| GAGTTCAGAAATTGGAGATA+AGG | + | chr1.2:66176127-66176146 | MS.gene20742:CDS | 35.0% | |
| GATATGCCTTCAAATTATGG+TGG | + | chr1.2:66176093-66176112 | MS.gene20742:CDS | 35.0% | |
| GATTATGGGAAATCTTCATC+TGG | + | chr1.2:66175769-66175788 | MS.gene20742:CDS | 35.0% | |
| GCAGGATCAAAACAATAAAC+AGG | - | chr1.2:66175748-66175767 | None:intergenic | 35.0% | |
| GGAGATAAGGAAAACTATTG+AGG | + | chr1.2:66176140-66176159 | MS.gene20742:CDS | 35.0% | |
| GGATCTTAGGAAGAATCTTA+AGG | + | chr1.2:66175843-66175862 | MS.gene20742:CDS | 35.0% | |
| GGGATTAACCACAATTCTAA+AGG | + | chr1.2:66174119-66174138 | MS.gene20742:intron | 35.0% | |
| TAGGGATAGAGTTCAGAAAT+TGG | + | chr1.2:66176119-66176138 | MS.gene20742:CDS | 35.0% | |
| TCAACATCTCAAAAAACCAG+TGG | + | chr1.2:66175240-66175259 | MS.gene20742:intron | 35.0% | |
| TCATCTGGGTTTGATAAAAC+AGG | + | chr1.2:66175784-66175803 | MS.gene20742:CDS | 35.0% | |
| TGGTGATATTCCTACTTTGA+TGG | + | chr1.2:66176209-66176228 | MS.gene20742:CDS | 35.0% | |
| TTAGAAACGATCGAGTCTTA+TGG | + | chr1.2:66176573-66176592 | MS.gene20742:intron | 35.0% | |
| TTGAATTGGCGAAGGAAATT+GGG | + | chr1.2:66175917-66175936 | MS.gene20742:CDS | 35.0% | |
| ! | ATCTTGACCTATTCGAGTTT+GGG | - | chr1.2:66174321-66174340 | None:intergenic | 35.0% |
| ! | CCTTTTATGAGAAATGTTGG+TGG | + | chr1.2:66176477-66176496 | MS.gene20742:intron | 35.0% |
| ! | CGTGTGTATTGTTTAGGATT+AGG | - | chr1.2:66175045-66175064 | None:intergenic | 35.0% |
| ! | GATAAGCTAGTTGAAGTGTT+TGG | + | chr1.2:66174679-66174698 | MS.gene20742:intron | 35.0% |
| ! | GGTTGGTACTTTAAGCTTAT+TGG | - | chr1.2:66175473-66175492 | None:intergenic | 35.0% |
| !! | AATTCAGTTTTAATGGAGGG+AGG | + | chr1.2:66176596-66176615 | MS.gene20742:intron | 35.0% |
| !! | GTTTTGATCCTGCTGATTAT+GGG | + | chr1.2:66175755-66175774 | MS.gene20742:CDS | 35.0% |
| !!! | ACTGTCTTTTTCAATGTGTG+TGG | - | chr1.2:66175165-66175184 | None:intergenic | 35.0% |
| !!! | CTTTTTCAATGTGTGTGGTT+TGG | - | chr1.2:66175160-66175179 | None:intergenic | 35.0% |
| !!! | GGATTTTGGGTTGGAATAAA+GGG | - | chr1.2:66175426-66175445 | None:intergenic | 35.0% |
| !!! | TGTTTTGATCCTGCTGATTA+TGG | + | chr1.2:66175754-66175773 | MS.gene20742:CDS | 35.0% |
| !!! | TTGCTTGTTTTATGCTGCAT+TGG | + | chr1.2:66176307-66176326 | MS.gene20742:intron | 35.0% |
| !!! | TTTGAAGGTTTTGTTGGAAG+GGG | - | chr1.2:66175545-66175564 | None:intergenic | 35.0% |
| AAACAAGGGGTTTAAGGATG+GGG | + | chr1.2:66177057-66177076 | MS.gene20742:CDS | 40.0% | |
| AAAGCGCACAAGAAATTGAC+AGG | + | chr1.2:66174060-66174079 | MS.gene20742:intron | 40.0% | |
| AAGATGGAGGAGAAGATTGA+AGG | + | chr1.2:66175985-66176004 | MS.gene20742:CDS | 40.0% | |
| AATTCAACCAAAACCGTCTC+CGG | - | chr1.2:66175904-66175923 | None:intergenic | 40.0% | |
| AATTGGGCTGTTGTGGTTAA+TGG | - | chr1.2:66174156-66174175 | None:intergenic | 40.0% | |
| AATTTCTCCATGGTTGGCAA+TGG | + | chr1.2:66177117-66177136 | MS.gene20742:CDS | 40.0% | |
| ACTTTAAGCTTATTGGGTGG+TGG | - | chr1.2:66175466-66175485 | None:intergenic | 40.0% | |
| AGATGGAGGAGAAGATTGAA+GGG | + | chr1.2:66175986-66176005 | MS.gene20742:CDS | 40.0% | |
| AGGAAGAATCTTAAGGCAAG+AGG | + | chr1.2:66175850-66175869 | MS.gene20742:CDS | 40.0% | |
| AGGTTGAGATTCTCTTTCTC+TGG | - | chr1.2:66175331-66175350 | None:intergenic | 40.0% | |
| ATGAGTGAGTGATGAAGCTT+GGG | - | chr1.2:66175494-66175513 | None:intergenic | 40.0% | |
| ATTACGGAACCAAACAATGG+CGG | - | chr1.2:66175662-66175681 | None:intergenic | 40.0% | |
| ATTTCTCCATGGTTGGCAAT+GGG | + | chr1.2:66177118-66177137 | MS.gene20742:CDS | 40.0% | |
| CAAACAAGGGGTTTAAGGAT+GGG | + | chr1.2:66177056-66177075 | MS.gene20742:CDS | 40.0% | |
| CACTTGTCGCCTTTCAAAAT+TGG | - | chr1.2:66174173-66174192 | None:intergenic | 40.0% | |
| CTAATTCTTCCATGACAGGA+GGG | + | chr1.2:66176978-66176997 | MS.gene20742:CDS | 40.0% | |
| CTCAAAAAACCAGTGGTAGT+AGG | + | chr1.2:66175247-66175266 | MS.gene20742:intron | 40.0% | |
| CTTTCAAAATTGGGCTGTTG+TGG | - | chr1.2:66174163-66174182 | None:intergenic | 40.0% | |
| GAAAAACACCTGTGACATTG+TGG | - | chr1.2:66176256-66176275 | None:intergenic | 40.0% | |
| GAAGATGAAAGAGGAGAATG+TGG | + | chr1.2:66176008-66176027 | MS.gene20742:CDS | 40.0% | |
| GAAGATTTCCCATAATCAGC+AGG | - | chr1.2:66175766-66175785 | None:intergenic | 40.0% | |
| GATTGAAGGGAAGATGAAAG+AGG | + | chr1.2:66175999-66176018 | MS.gene20742:CDS | 40.0% | |
| GGAAGAATCTTAAGGCAAGA+GGG | + | chr1.2:66175851-66175870 | MS.gene20742:CDS | 40.0% | |
| GGCATATCCTCCAAACTAAA+CGG | - | chr1.2:66176081-66176100 | None:intergenic | 40.0% | |
| GGGGCACAAGATAGTATATA+TGG | + | chr1.2:66177076-66177095 | MS.gene20742:CDS | 40.0% | |
| GGTACTTTAAGCTTATTGGG+TGG | - | chr1.2:66175469-66175488 | None:intergenic | 40.0% | |
| GTTGAATTGGCGAAGGAAAT+TGG | + | chr1.2:66175916-66175935 | MS.gene20742:CDS | 40.0% | |
| TAATTCTTCCATGACAGGAG+GGG | + | chr1.2:66176979-66176998 | MS.gene20742:CDS | 40.0% | |
| TAGAGAGGTTTCTCATGATG+AGG | + | chr1.2:66175960-66175979 | MS.gene20742:CDS | 40.0% | |
| TATCTGTTACCTACTACCAC+TGG | - | chr1.2:66175259-66175278 | None:intergenic | 40.0% | |
| TCAACCAAACAAGGGGTTTA+AGG | + | chr1.2:66177051-66177070 | MS.gene20742:CDS | 40.0% | |
| TGAATTGGCGAAGGAAATTG+GGG | + | chr1.2:66175918-66175937 | MS.gene20742:CDS | 40.0% | |
| TGTGAAGCTCAACCAAACAA+GGG | + | chr1.2:66177043-66177062 | MS.gene20742:CDS | 40.0% | |
| TTACATGTACCAACACGTGT+CGG | + | chr1.2:66176441-66176460 | MS.gene20742:intron | 40.0% | |
| TTCTCATGATGAGGTGAAGA+TGG | + | chr1.2:66175969-66175988 | MS.gene20742:CDS | 40.0% | |
| TTGAGATTCTCTTTCTCTGG+TGG | - | chr1.2:66175328-66175347 | None:intergenic | 40.0% | |
| TTTGTTGGAAGGGGAAGAAT+GGG | - | chr1.2:66175536-66175555 | None:intergenic | 40.0% | |
| ! | ATTCCTACTTTGATGGACCT+TGG | + | chr1.2:66176216-66176235 | MS.gene20742:CDS | 40.0% |
| ! | CACAACAGCCCAATTTTGAA+AGG | + | chr1.2:66174161-66174180 | MS.gene20742:intron | 40.0% |
| ! | CATCTTGACCTATTCGAGTT+TGG | - | chr1.2:66174322-66174341 | None:intergenic | 40.0% |
| ! | GTGGTGGTGATAGTAAAGAT+GGG | - | chr1.2:66175447-66175466 | None:intergenic | 40.0% |
| ! | TGAGGATTTGCCGTTTAGTT+TGG | + | chr1.2:66176068-66176087 | MS.gene20742:CDS | 40.0% |
| ! | TGGTGGTAAAGAGCTTTTAG+CGG | + | chr1.2:66176494-66176513 | MS.gene20742:intron | 40.0% |
| ! | TTGAATCGGTTTCGGATCTT+AGG | + | chr1.2:66175830-66175849 | MS.gene20742:CDS | 40.0% |
| ! | TTGAGATTCACATCCCGTTT+TGG | - | chr1.2:66174422-66174441 | None:intergenic | 40.0% |
| ! | TTTTGTTGGAAGGGGAAGAA+TGG | - | chr1.2:66175537-66175556 | None:intergenic | 40.0% |
| !! | ATGTGGAGGTGAAGTGTTTT+TGG | + | chr1.2:66176025-66176044 | MS.gene20742:CDS | 40.0% |
| !! | GAGGCTTTGGATCAACTTAA+GGG | + | chr1.2:66176159-66176178 | MS.gene20742:CDS | 40.0% |
| !! | GGTAACACTTTAGCTCTGTT+TGG | - | chr1.2:66174854-66174873 | None:intergenic | 40.0% |
| !! | GTAAAGATGGGATTTTGGGT+TGG | - | chr1.2:66175435-66175454 | None:intergenic | 40.0% |
| !! | TGAGGCTTTGGATCAACTTA+AGG | + | chr1.2:66176158-66176177 | MS.gene20742:CDS | 40.0% |
| !! | TGTGGAGGTGAAGTGTTTTT+GGG | + | chr1.2:66176026-66176045 | MS.gene20742:CDS | 40.0% |
| !!! | GGGATTTTGGGTTGGAATAA+AGG | - | chr1.2:66175427-66175446 | None:intergenic | 40.0% |
| !!! | TTTTGGGTTGGAATAAAGGG+AGG | - | chr1.2:66175423-66175442 | None:intergenic | 40.0% |
| AAGGAGAGTGGTGATTTGAG+AGG | - | chr1.2:66175589-66175608 | None:intergenic | 45.0% | |
| AGACCAAGGTCCATCAAAGT+AGG | - | chr1.2:66176222-66176241 | None:intergenic | 45.0% | |
| AGGAGAGTGGTGATTTGAGA+GGG | - | chr1.2:66175588-66175607 | None:intergenic | 45.0% | |
| CCAAACAAGGGGTTTAAGGA+TGG | + | chr1.2:66177055-66177074 | MS.gene20742:CDS | 45.0% | |
| CCAAACACAAAGGCTCTGTT+TGG | + | chr1.2:66174586-66174605 | MS.gene20742:intron | 45.0% | |
| CCAAACAGAGCCTTTGTGTT+TGG | - | chr1.2:66174589-66174608 | None:intergenic | 45.0% | |
| CCATCCTTAAACCCCTTGTT+TGG | - | chr1.2:66177058-66177077 | None:intergenic | 45.0% | |
| CCTAATTCTTCCATGACAGG+AGG | + | chr1.2:66176977-66176996 | MS.gene20742:CDS | 45.0% | |
| CCTCCTGTCATGGAAGAATT+AGG | - | chr1.2:66176980-66176999 | None:intergenic | 45.0% | |
| GAATCTTAAGGCAAGAGGGT+CGG | + | chr1.2:66175855-66175874 | MS.gene20742:CDS | 45.0% | |
| GATGAAAGAGGAGAATGTGG+AGG | + | chr1.2:66176011-66176030 | MS.gene20742:CDS | 45.0% | |
| GATGAGTGAGTGATGAAGCT+TGG | - | chr1.2:66175495-66175514 | None:intergenic | 45.0% | |
| GGCTGTTGTGGTTAATGGTT+AGG | - | chr1.2:66174151-66174170 | None:intergenic | 45.0% | |
| GTCATGGAAGAATTAGGCAC+TGG | - | chr1.2:66176974-66176993 | None:intergenic | 45.0% | |
| GTGAAGCTCAACCAAACAAG+GGG | + | chr1.2:66177044-66177063 | MS.gene20742:CDS | 45.0% | |
| GTGCCTAATTCTTCCATGAC+AGG | + | chr1.2:66176974-66176993 | MS.gene20742:CDS | 45.0% | |
| GTGTGAAGCTCAACCAAACA+AGG | + | chr1.2:66177042-66177061 | MS.gene20742:CDS | 45.0% | |
| TACATGTACCAACACGTGTC+GGG | + | chr1.2:66176442-66176461 | MS.gene20742:intron | 45.0% | |
| TCAGCTCATCAAACATTGCG+CGG | - | chr1.2:66177156-66177175 | None:intergenic | 45.0% | |
| TCATGATGAGGTGAAGATGG+AGG | + | chr1.2:66175972-66175991 | MS.gene20742:CDS | 45.0% | |
| TGCGGTGTATTGTCATAGAG+AGG | + | chr1.2:66175945-66175964 | MS.gene20742:CDS | 45.0% | |
| TGGCTCATTCTTGGATGGTA+TGG | + | chr1.2:66176327-66176346 | MS.gene20742:intron | 45.0% | |
| TTGGAATAAAGGGAGGAGAG+AGG | - | chr1.2:66175416-66175435 | None:intergenic | 45.0% | |
| ! | CTATATTGGTAACCTCGTGC+AGG | + | chr1.2:66176940-66176959 | MS.gene20742:intron | 45.0% |
| ! | GGTGGTGGTGATAGTAAAGA+TGG | - | chr1.2:66175448-66175467 | None:intergenic | 45.0% |
| ! | TCTCTTTCTCTGGTGGTGTT+TGG | - | chr1.2:66175321-66175340 | None:intergenic | 45.0% |
| ! | TCTGGTGGTGTTTGGTTGTT+GGG | - | chr1.2:66175313-66175332 | None:intergenic | 45.0% |
| ! | TGTTTGTTGAGGTGGGTAGA+TGG | - | chr1.2:66174520-66174539 | None:intergenic | 45.0% |
| ! | TTAAGCTTATTGGGTGGTGG+TGG | - | chr1.2:66175463-66175482 | None:intergenic | 45.0% |
| !! | ATGCTGCATTGGCTCATTCT+TGG | + | chr1.2:66176318-66176337 | MS.gene20742:intron | 45.0% |
| !! | GGATTTGCCGTTTAGTTTGG+AGG | + | chr1.2:66176071-66176090 | MS.gene20742:CDS | 45.0% |
| !! | GGCCCAATCCTTTAGAATTG+TGG | - | chr1.2:66174130-66174149 | None:intergenic | 45.0% |
| !! | GTGGAGGTGAAGTGTTTTTG+GGG | + | chr1.2:66176027-66176046 | MS.gene20742:CDS | 45.0% |
| !! | TGCATTGGCTCATTCTTGGA+TGG | + | chr1.2:66176322-66176341 | MS.gene20742:intron | 45.0% |
| !! | TGGCAGATGGATTAAGACCA+AGG | - | chr1.2:66176236-66176255 | None:intergenic | 45.0% |
| !!! | GGAGACGGTTTTGGTTGAAT+TGG | + | chr1.2:66175903-66175922 | MS.gene20742:CDS | 45.0% |
| !!! | GGTTTTGGTTGAATTGGCGA+AGG | + | chr1.2:66175909-66175928 | MS.gene20742:CDS | 45.0% |
| !! | TATATATATATATATATCAA+TGG | - | chr1.2:66174212-66174231 | None:intergenic | 5.0% |
| ACCTGTGACATTGTGGCAGA+TGG | - | chr1.2:66176249-66176268 | None:intergenic | 50.0% | |
| AGCATGCAGCAGAAACAAGC+AGG | - | chr1.2:66176847-66176866 | None:intergenic | 50.0% | |
| AGCTCATCAAACATTGCGCG+GGG | - | chr1.2:66177154-66177173 | None:intergenic | 50.0% | |
| AGCTGAACATCACCACGAGA+AGG | - | chr1.2:66176189-66176208 | None:intergenic | 50.0% | |
| AGCTGAAGAAAACTGCCAGC+AGG | + | chr1.2:66177170-66177189 | MS.gene20742:CDS | 50.0% | |
| AGGGAGAGAGAAGCAAGTGA+CGG | - | chr1.2:66175385-66175404 | None:intergenic | 50.0% | |
| AGTAGGACGGTGAGGGATTA+AGG | - | chr1.2:66175608-66175627 | None:intergenic | 50.0% | |
| ATTGGCGAAGGAAATTGGGG+CGG | + | chr1.2:66175921-66175940 | MS.gene20742:CDS | 50.0% | |
| CAGCTCATCAAACATTGCGC+GGG | - | chr1.2:66177155-66177174 | None:intergenic | 50.0% | |
| CGGATCTTGTGGTGAGAGTT+GGG | + | chr1.2:66175875-66175894 | MS.gene20742:CDS | 50.0% | |
| CTTAAGGGTCTTCCTTCTCG+TGG | + | chr1.2:66176174-66176193 | MS.gene20742:CDS | 50.0% | |
| GAGGAGAGAGGAGAGAGAAA+GGG | - | chr1.2:66175404-66175423 | None:intergenic | 50.0% | |
| GCTAGGTCCCAAACTCGAAT+AGG | + | chr1.2:66174311-66174330 | MS.gene20742:intron | 50.0% | |
| GTGAGTGATGAAGCTTGGGT+TGG | - | chr1.2:66175490-66175509 | None:intergenic | 50.0% | |
| TCCATCTGCCACAATGTCAC+AGG | + | chr1.2:66176245-66176264 | MS.gene20742:CDS | 50.0% | |
| TCGGATCTTGTGGTGAGAGT+TGG | + | chr1.2:66175874-66175893 | MS.gene20742:CDS | 50.0% | |
| TTCGGAGAACCGCCATTGTT+TGG | + | chr1.2:66175650-66175669 | MS.gene20742:CDS | 50.0% | |
| ! | ATTGGTAACCTCGTGCAGGA+TGG | + | chr1.2:66176944-66176963 | MS.gene20742:intron | 50.0% |
| ! | CTCTGGTGGTGTTTGGTTGT+TGG | - | chr1.2:66175314-66175333 | None:intergenic | 50.0% |
| ! | TCTCGTGGTGATGTTCAGCT+TGG | + | chr1.2:66176189-66176208 | MS.gene20742:CDS | 50.0% |
| ! | TTGGTAACCTCGTGCAGGAT+GGG | + | chr1.2:66176945-66176964 | MS.gene20742:intron | 50.0% |
| !! | AGGGGAAGAATGGGTTTTGG+TGG | - | chr1.2:66175527-66175546 | None:intergenic | 50.0% |
| !! | GGAAGGGGAAGAATGGGTTT+TGG | - | chr1.2:66175530-66175549 | None:intergenic | 50.0% |
| AAGGGTCAGTAGGACGGTGA+GGG | - | chr1.2:66175615-66175634 | None:intergenic | 55.0% | |
| AGAGAAGCAAGTGACGGTGG+TGG | - | chr1.2:66175379-66175398 | None:intergenic | 55.0% | |
| AGGCATCCCATTGCCAACCA+TGG | - | chr1.2:66177127-66177146 | None:intergenic | 55.0% | |
| CGGAAGAAGGGTCAGTAGGA+CGG | - | chr1.2:66175621-66175640 | None:intergenic | 55.0% | |
| CGGTGAGGGATTAAGGAGAG+TGG | - | chr1.2:66175601-66175620 | None:intergenic | 55.0% | |
| CTCATCAAACATTGCGCGGG+GGG | - | chr1.2:66177152-66177171 | None:intergenic | 55.0% | |
| GAAGGAAATTGGGGCGGATG+CGG | + | chr1.2:66175927-66175946 | MS.gene20742:CDS | 55.0% | |
| GAGAGAGAAGCAAGTGACGG+TGG | - | chr1.2:66175382-66175401 | None:intergenic | 55.0% | |
| GCTCATCAAACATTGCGCGG+GGG | - | chr1.2:66177153-66177172 | None:intergenic | 55.0% | |
| GGAGGAGAGAGGAGAGAGAA+AGG | - | chr1.2:66175405-66175424 | None:intergenic | 55.0% | |
| TCTCAACCTCACACCCTCAC+CGG | + | chr1.2:66175342-66175361 | MS.gene20742:intron | 55.0% | |
| TGTGGTGAGAGTTGGGAAGC+CGG | + | chr1.2:66175882-66175901 | MS.gene20742:CDS | 55.0% | |
| TTCAGTCTCCCCTCCTGTCA+TGG | - | chr1.2:66176990-66177009 | None:intergenic | 55.0% | |
| ! | GGGAGACTGAAGCACTACAG+AGG | + | chr1.2:66176999-66177018 | MS.gene20742:CDS | 55.0% |
| ACCAACACGTGTCGGGACAC+TGG | + | chr1.2:66176449-66176468 | MS.gene20742:intron | 60.0% | |
| CTTCTTCCGCCGCTGCTCTT+CGG | + | chr1.2:66175632-66175651 | MS.gene20742:CDS | 60.0% | |
| GAAGAGCAGCGGCGGAAGAA+GGG | - | chr1.2:66175633-66175652 | None:intergenic | 60.0% | |
| GAAGGGTCAGTAGGACGGTG+AGG | - | chr1.2:66175616-66175635 | None:intergenic | 60.0% | |
| GAGAGTTGGGAAGCCGGAGA+CGG | + | chr1.2:66175888-66175907 | MS.gene20742:CDS | 60.0% | |
| GGAAGTGGTGGTTCCGGTGA+GGG | - | chr1.2:66175358-66175377 | None:intergenic | 60.0% | |
| GGCAAGAGGGTCGGATCTTG+TGG | + | chr1.2:66175864-66175883 | MS.gene20742:CDS | 60.0% | |
| TCCAGTGTCCCGACACGTGT+TGG | - | chr1.2:66176453-66176472 | None:intergenic | 60.0% | |
| TGGAAGTGGTGGTTCCGGTG+AGG | - | chr1.2:66175359-66175378 | None:intergenic | 60.0% | |
| ! | TGGGAAGCCGGAGACGGTTT+TGG | + | chr1.2:66175894-66175913 | MS.gene20742:CDS | 60.0% |
| !! | AGTGACGGTGGTGGAAGTGG+TGG | - | chr1.2:66175370-66175389 | None:intergenic | 60.0% |
| !! | GCAAGTGACGGTGGTGGAAG+TGG | - | chr1.2:66175373-66175392 | None:intergenic | 60.0% |
| !! | GGTGGTGGAAGTGGTGGTTC+CGG | - | chr1.2:66175364-66175383 | None:intergenic | 60.0% |
| CAAACATTGCGCGGGGGGAG+AGG | - | chr1.2:66177147-66177166 | None:intergenic | 65.0% | |
| CGAAGAGCAGCGGCGGAAGA+AGG | - | chr1.2:66175634-66175653 | None:intergenic | 65.0% | |
| CTGGCTTCCCATCCTGCACG+AGG | - | chr1.2:66176955-66176974 | None:intergenic | 65.0% | |
| GCGGCGGAAGAAGGGTCAGT+AGG | - | chr1.2:66175625-66175644 | None:intergenic | 65.0% | |
| GGCGGTTCTCCGAAGAGCAG+CGG | - | chr1.2:66175644-66175663 | None:intergenic | 65.0% | |
| GGTTCTCCGAAGAGCAGCGG+CGG | - | chr1.2:66175641-66175660 | None:intergenic | 65.0% | |
| ! | ACATCTGGGAGCGCACCTGC+TGG | - | chr1.2:66177188-66177207 | None:intergenic | 65.0% |
| ! | GTGGTTCCGGTGAGGGTGTG+AGG | - | chr1.2:66175351-66175370 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 66173589 | 66177219 | 66173589 | ID=MS.gene20742 |
| chr1.2 | mRNA | 66173589 | 66177219 | 66173589 | ID=MS.gene20742.t1;Parent=MS.gene20742 |
| chr1.2 | exon | 66173589 | 66173730 | 66173589 | ID=MS.gene20742.t1.exon1;Parent=MS.gene20742.t1 |
| chr1.2 | CDS | 66173589 | 66173730 | 66173589 | ID=cds.MS.gene20742.t1;Parent=MS.gene20742.t1 |
| chr1.2 | exon | 66175581 | 66176266 | 66175581 | ID=MS.gene20742.t1.exon2;Parent=MS.gene20742.t1 |
| chr1.2 | CDS | 66175581 | 66176266 | 66175581 | ID=cds.MS.gene20742.t1;Parent=MS.gene20742.t1 |
| chr1.2 | exon | 66176962 | 66177219 | 66176962 | ID=MS.gene20742.t1.exon3;Parent=MS.gene20742.t1 |
| chr1.2 | CDS | 66176962 | 66177219 | 66176962 | ID=cds.MS.gene20742.t1;Parent=MS.gene20742.t1 |
| Gene Sequence |
| Protein sequence |
