Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22574.t1 | XP_003611203.1 | 97.4 | 496 | 13 | 0 | 1 | 496 | 1 | 496 | 1.00E-283 | 985.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22574.t1 | Q9LQ10 | 55.1 | 530 | 194 | 9 | 1 | 494 | 31 | 552 | 1.4e-156 | 554.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22574.t1 | G7KEV4 | 97.4 | 496 | 13 | 0 | 1 | 496 | 1 | 496 | 7.3e-284 | 985.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene22574 | 0.847055 | 1.47E-59 | -1.69E-46 |
MS.gene049217 | MS.gene22574 | 0.821551 | 3.80E-53 | -1.69E-46 |
MS.gene049222 | MS.gene22574 | 0.832597 | 8.63E-56 | -1.69E-46 |
MS.gene049320 | MS.gene22574 | 0.812557 | 3.99E-51 | -1.69E-46 |
MS.gene049488 | MS.gene22574 | 0.813827 | 2.10E-51 | -1.69E-46 |
MS.gene049609 | MS.gene22574 | 0.814753 | 1.31E-51 | -1.69E-46 |
MS.gene049805 | MS.gene22574 | 0.838374 | 2.99E-57 | -1.69E-46 |
MS.gene050163 | MS.gene22574 | 0.813978 | 1.95E-51 | -1.69E-46 |
MS.gene050577 | MS.gene22574 | 0.84545 | 4.03E-59 | -1.69E-46 |
MS.gene050593 | MS.gene22574 | 0.804063 | 2.59E-49 | -1.69E-46 |
MS.gene050699 | MS.gene22574 | 0.823148 | 1.62E-53 | -1.69E-46 |
MS.gene050747 | MS.gene22574 | 0.838567 | 2.66E-57 | -1.69E-46 |
MS.gene050781 | MS.gene22574 | 0.818619 | 1.78E-52 | -1.69E-46 |
MS.gene050950 | MS.gene22574 | 0.830136 | 3.48E-55 | -1.69E-46 |
MS.gene051167 | MS.gene22574 | -0.806147 | 9.47E-50 | -1.69E-46 |
MS.gene051387 | MS.gene22574 | 0.805893 | 1.07E-49 | -1.69E-46 |
MS.gene051666 | MS.gene22574 | 0.829327 | 5.48E-55 | -1.69E-46 |
MS.gene051694 | MS.gene22574 | 0.805513 | 1.29E-49 | -1.69E-46 |
MS.gene052164 | MS.gene22574 | 0.826626 | 2.45E-54 | -1.69E-46 |
MS.gene052421 | MS.gene22574 | 0.807461 | 5.00E-50 | -1.69E-46 |
MS.gene052501 | MS.gene22574 | 0.837041 | 6.57E-57 | -1.69E-46 |
MS.gene052503 | MS.gene22574 | 0.833917 | 4.05E-56 | -1.69E-46 |
MS.gene052505 | MS.gene22574 | 0.838374 | 2.99E-57 | -1.69E-46 |
MS.gene052615 | MS.gene22574 | 0.825336 | 4.96E-54 | -1.69E-46 |
MS.gene052823 | MS.gene22574 | 0.831067 | 2.06E-55 | -1.69E-46 |
MS.gene052825 | MS.gene22574 | 0.837292 | 5.67E-57 | -1.69E-46 |
MS.gene052982 | MS.gene22574 | 0.804729 | 1.88E-49 | -1.69E-46 |
MS.gene053203 | MS.gene22574 | 0.800741 | 1.25E-48 | -1.69E-46 |
MS.gene053213 | MS.gene22574 | 0.831627 | 1.50E-55 | -1.69E-46 |
MS.gene053286 | MS.gene22574 | 0.817636 | 2.98E-52 | -1.69E-46 |
MS.gene053436 | MS.gene22574 | 0.809828 | 1.56E-50 | -1.69E-46 |
MS.gene053574 | MS.gene22574 | 0.811576 | 6.54E-51 | -1.69E-46 |
MS.gene053579 | MS.gene22574 | 0.840956 | 6.36E-58 | -1.69E-46 |
MS.gene053626 | MS.gene22574 | 0.814351 | 1.61E-51 | -1.69E-46 |
MS.gene053632 | MS.gene22574 | 0.845292 | 4.45E-59 | -1.69E-46 |
MS.gene05470 | MS.gene22574 | 0.82024 | 7.62E-53 | -1.69E-46 |
MS.gene054927 | MS.gene22574 | 0.836829 | 7.44E-57 | -1.69E-46 |
MS.gene055362 | MS.gene22574 | 0.804897 | 1.73E-49 | -1.69E-46 |
MS.gene055502 | MS.gene22574 | 0.825132 | 5.54E-54 | -1.69E-46 |
MS.gene055577 | MS.gene22574 | 0.804263 | 2.35E-49 | -1.69E-46 |
MS.gene055941 | MS.gene22574 | 0.813223 | 2.85E-51 | -1.69E-46 |
MS.gene056040 | MS.gene22574 | 0.811002 | 8.70E-51 | -1.69E-46 |
MS.gene05664 | MS.gene22574 | 0.80084 | 1.19E-48 | -1.69E-46 |
MS.gene056657 | MS.gene22574 | 0.800491 | 1.41E-48 | -1.69E-46 |
MS.gene05666 | MS.gene22574 | 0.805021 | 1.63E-49 | -1.69E-46 |
MS.gene057048 | MS.gene22574 | 0.81749 | 3.21E-52 | -1.69E-46 |
MS.gene057146 | MS.gene22574 | 0.833404 | 5.44E-56 | -1.69E-46 |
MS.gene057416 | MS.gene22574 | 0.823565 | 1.29E-53 | -1.69E-46 |
MS.gene057658 | MS.gene22574 | 0.802665 | 5.04E-49 | -1.69E-46 |
MS.gene057734 | MS.gene22574 | 0.822198 | 2.69E-53 | -1.69E-46 |
MS.gene057831 | MS.gene22574 | 0.832188 | 1.09E-55 | -1.69E-46 |
MS.gene058019 | MS.gene22574 | 0.833643 | 4.74E-56 | -1.69E-46 |
MS.gene058419 | MS.gene22574 | 0.823345 | 1.46E-53 | -1.69E-46 |
MS.gene058544 | MS.gene22574 | 0.825232 | 5.24E-54 | -1.69E-46 |
MS.gene058838 | MS.gene22574 | 0.800957 | 1.13E-48 | -1.69E-46 |
MS.gene05883 | MS.gene22574 | 0.821153 | 4.70E-53 | -1.69E-46 |
MS.gene05934 | MS.gene22574 | 0.804294 | 2.31E-49 | -1.69E-46 |
MS.gene059455 | MS.gene22574 | 0.806202 | 9.23E-50 | -1.69E-46 |
MS.gene059677 | MS.gene22574 | 0.807087 | 6.00E-50 | -1.69E-46 |
MS.gene059718 | MS.gene22574 | 0.824647 | 7.21E-54 | -1.69E-46 |
MS.gene060835 | MS.gene22574 | 0.805941 | 1.05E-49 | -1.69E-46 |
MS.gene06092 | MS.gene22574 | 0.820843 | 5.54E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22574.t1 | MTR_5g011400 | 97.379 | 496 | 13 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1007 |
MS.gene22574.t1 | MTR_6g463260 | 54.200 | 500 | 221 | 4 | 1 | 494 | 30 | 527 | 0.0 | 563 |
MS.gene22574.t1 | MTR_6g091760 | 43.521 | 409 | 223 | 3 | 84 | 488 | 26 | 430 | 9.12e-132 | 389 |
MS.gene22574.t1 | MTR_8g101750 | 42.752 | 407 | 223 | 3 | 84 | 488 | 24 | 422 | 7.60e-129 | 382 |
MS.gene22574.t1 | MTR_4g097540 | 41.687 | 415 | 232 | 3 | 84 | 488 | 16 | 430 | 1.26e-126 | 377 |
MS.gene22574.t1 | MTR_3g103550 | 43.237 | 414 | 229 | 3 | 84 | 492 | 14 | 426 | 8.07e-125 | 373 |
MS.gene22574.t1 | MTR_5g015020 | 41.546 | 414 | 233 | 4 | 84 | 488 | 16 | 429 | 5.62e-123 | 368 |
MS.gene22574.t1 | MTR_8g098930 | 40.786 | 407 | 238 | 1 | 85 | 488 | 25 | 431 | 2.00e-121 | 364 |
MS.gene22574.t1 | MTR_8g028600 | 39.506 | 405 | 245 | 0 | 84 | 488 | 23 | 427 | 3.40e-117 | 353 |
MS.gene22574.t1 | MTR_8g101820 | 40.049 | 407 | 221 | 5 | 84 | 488 | 24 | 409 | 7.71e-114 | 343 |
MS.gene22574.t1 | MTR_7g079080 | 39.655 | 406 | 244 | 1 | 84 | 488 | 23 | 428 | 2.76e-113 | 343 |
MS.gene22574.t1 | MTR_7g079080 | 38.080 | 323 | 199 | 1 | 167 | 488 | 1 | 323 | 3.89e-85 | 267 |
MS.gene22574.t1 | MTR_8g023140 | 21.622 | 333 | 238 | 11 | 178 | 488 | 180 | 511 | 2.27e-13 | 72.8 |
MS.gene22574.t1 | MTR_5g033230 | 25.175 | 143 | 104 | 3 | 178 | 318 | 129 | 270 | 1.73e-11 | 66.6 |
MS.gene22574.t1 | MTR_5g033230 | 25.175 | 143 | 104 | 3 | 178 | 318 | 129 | 270 | 2.14e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22574.t1 | AT1G62960 | 55.932 | 531 | 188 | 10 | 1 | 494 | 31 | 552 | 0.0 | 580 |
MS.gene22574.t1 | AT5G51690 | 52.305 | 499 | 226 | 6 | 1 | 494 | 1 | 492 | 0.0 | 552 |
MS.gene22574.t1 | AT5G51690 | 53.911 | 358 | 162 | 1 | 140 | 494 | 12 | 369 | 3.14e-148 | 429 |
MS.gene22574.t1 | AT4G37770 | 44.844 | 417 | 226 | 1 | 84 | 496 | 16 | 432 | 6.41e-133 | 393 |
MS.gene22574.t1 | AT4G26200 | 43.627 | 408 | 227 | 2 | 84 | 488 | 30 | 437 | 3.73e-126 | 375 |
MS.gene22574.t1 | AT3G49700 | 43.510 | 416 | 231 | 1 | 84 | 495 | 16 | 431 | 2.53e-123 | 369 |
MS.gene22574.t1 | AT5G65800 | 42.788 | 416 | 234 | 2 | 84 | 495 | 16 | 431 | 1.90e-121 | 364 |
MS.gene22574.t1 | AT2G22810 | 42.054 | 409 | 232 | 3 | 85 | 488 | 17 | 425 | 1.40e-120 | 362 |
MS.gene22574.t1 | AT4G11280 | 40.244 | 410 | 243 | 2 | 84 | 492 | 27 | 435 | 1.53e-119 | 360 |
MS.gene22574.t1 | AT4G08040 | 40.686 | 408 | 237 | 3 | 84 | 488 | 14 | 419 | 1.83e-117 | 353 |
MS.gene22574.t1 | AT3G61510 | 41.422 | 408 | 229 | 4 | 85 | 488 | 24 | 425 | 1.92e-115 | 349 |
MS.gene22574.t1 | AT1G01480 | 37.164 | 409 | 253 | 2 | 84 | 488 | 24 | 432 | 7.79e-111 | 338 |
MS.gene22574.t1 | AT1G01480 | 38.050 | 318 | 193 | 2 | 175 | 488 | 9 | 326 | 1.92e-87 | 274 |
MS.gene22574.t1 | AT1G72330 | 20.659 | 334 | 240 | 10 | 178 | 488 | 196 | 527 | 2.75e-16 | 82.0 |
MS.gene22574.t1 | AT1G72330 | 20.173 | 347 | 239 | 10 | 178 | 488 | 196 | 540 | 6.75e-15 | 77.8 |
MS.gene22574.t1 | AT1G17290 | 20.120 | 333 | 243 | 10 | 178 | 488 | 199 | 530 | 1.28e-14 | 76.6 |
MS.gene22574.t1 | AT1G23310 | 25.175 | 143 | 104 | 3 | 178 | 318 | 129 | 270 | 3.58e-12 | 68.9 |
MS.gene22574.t1 | AT1G23310 | 25.175 | 143 | 104 | 3 | 178 | 318 | 129 | 270 | 3.97e-12 | 68.9 |
MS.gene22574.t1 | AT1G72330 | 21.795 | 156 | 119 | 3 | 178 | 331 | 196 | 350 | 1.81e-11 | 66.6 |
Find 122 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCGCATCCGTTCATATTT+CGG | 0.176135 | 5.2:+4134296 | MS.gene22574:CDS |
AATAATAACTCACGGTGTTT+TGG | 0.197413 | 5.2:-4134437 | None:intergenic |
ATAATCTCTAATGAAATATT+TGG | 0.209776 | 5.2:+4136227 | MS.gene22574:CDS |
ACCGCATCCGTTCATATTTC+GGG | 0.225078 | 5.2:+4134297 | MS.gene22574:CDS |
AGGAGAGTCGGTTGTGATTA+TGG | 0.234616 | 5.2:-4134331 | None:intergenic |
TTGTTTAAACCAACGTAATA+AGG | 0.283341 | 5.2:-4134351 | None:intergenic |
GCAAAAGCCACCACTGCTTC+TGG | 0.296696 | 5.2:-4136591 | None:intergenic |
AGAAACATTACTTGATCTTC+TGG | 0.325403 | 5.2:+4136178 | MS.gene22574:CDS |
TGGTTTCATGTCTCAAGTTT+TGG | 0.325778 | 5.2:+4135748 | MS.gene22574:CDS |
CAAGGAGTTGTCCAAGGAAC+AGG | 0.345132 | 5.2:+4134117 | MS.gene22574:CDS |
TGCTACTTACCATGGATTCA+TGG | 0.356282 | 5.2:+4134774 | MS.gene22574:CDS |
TGTGAAGGGTTGAAGAAAAC+TGG | 0.369060 | 5.2:-4135776 | None:intergenic |
AGCTTCTGCCTAGCAGATAA+TGG | 0.376523 | 5.2:+4135842 | MS.gene22574:CDS |
ATCCACAACATTCTCATTAT+AGG | 0.385218 | 5.2:-4136393 | None:intergenic |
GGTTCATATAGTGTTTGATT+TGG | 0.385936 | 5.2:+4136325 | MS.gene22574:CDS |
GTTCCCACGCCTCATAGTCC+TGG | 0.388688 | 5.2:+4135878 | MS.gene22574:CDS |
CGTGACAAGGCGGGGAGCTC+CGG | 0.388987 | 5.2:-4134246 | None:intergenic |
TCTTCGCTTGGTTGAAAGCT+TGG | 0.391216 | 5.2:-4136085 | None:intergenic |
GCTTTGATGAGGCCGTAAAA+TGG | 0.391674 | 5.2:+4135988 | MS.gene22574:intron |
TTTCTTCAACCCTTCACATA+TGG | 0.391679 | 5.2:+4135781 | MS.gene22574:CDS |
AATGGAAGCGCTGCTATACT+AGG | 0.401042 | 5.2:+4134712 | MS.gene22574:CDS |
GGTTGTTGGAAGGAGGAGAT+TGG | 0.401069 | 5.2:-4134215 | None:intergenic |
TTTGACTACGTTTCTTCGCT+TGG | 0.407338 | 5.2:-4136097 | None:intergenic |
GAGGCCGTAAAATGGCGATC+TGG | 0.407730 | 5.2:+4135996 | MS.gene22574:CDS |
GTAATAAGCAATTGCTGAGT+TGG | 0.421065 | 5.2:-4136455 | None:intergenic |
TTCCAACAACCTTCCGCCTC+CGG | 0.421274 | 5.2:+4134227 | MS.gene22574:CDS |
CCTGATGGTGTTATTCAGCT+TGG | 0.423048 | 5.2:+4134408 | MS.gene22574:CDS |
CTCCGGAGGCGGAAGGTTGT+TGG | 0.429612 | 5.2:-4134229 | None:intergenic |
GTGGAAGGATTAGAGCAGTT+GGG | 0.430008 | 5.2:+4136557 | MS.gene22574:CDS |
ATTCGTTCCTATAGTGAAAA+GGG | 0.430876 | 5.2:+4136638 | MS.gene22574:CDS |
CATTCGTTCCTATAGTGAAA+AGG | 0.435473 | 5.2:+4136637 | MS.gene22574:CDS |
CGATTTAATAATTTGCCAGC+AGG | 0.436573 | 5.2:-4136155 | None:intergenic |
CGGAAGATCATGATCGGGAC+AGG | 0.437548 | 5.2:+4136303 | MS.gene22574:CDS |
GAGAGAGAGCGTGACAAGGC+GGG | 0.444689 | 5.2:-4134255 | None:intergenic |
AGGCCGTAAAATGGCGATCT+GGG | 0.452160 | 5.2:+4135997 | MS.gene22574:CDS |
AAACCTTGTATCTGAAATCA+TGG | 0.453144 | 5.2:-4136477 | None:intergenic |
ATCCGTTCATATTTCGGGTC+GGG | 0.455221 | 5.2:+4134302 | MS.gene22574:CDS |
CTAATCATACAGGTTGTGGC+TGG | 0.455743 | 5.2:+4135728 | MS.gene22574:intron |
CCTGTAGTAATGGAACGAAT+CGG | 0.459030 | 5.2:+4136788 | MS.gene22574:CDS |
AAGGCGGGGAGCTCCGGAGG+CGG | 0.467024 | 5.2:-4134240 | None:intergenic |
CTGAGGCAACCACAATTTGA+TGG | 0.468751 | 5.2:-4134739 | None:intergenic |
CTGTAGTAATGGAACGAATC+GGG | 0.469670 | 5.2:+4136789 | MS.gene22574:CDS |
GCAGAAGCTTAGAATTTCAA+TGG | 0.475169 | 5.2:-4135828 | None:intergenic |
CCGATTCGTTCCATTACTAC+AGG | 0.480415 | 5.2:-4136788 | None:intergenic |
TGTGAGCATGGCAGAAATCA+TGG | 0.480730 | 5.2:+4136277 | MS.gene22574:CDS |
GTCACGCTCTCTCTCAGCTC+GGG | 0.483427 | 5.2:+4134263 | MS.gene22574:CDS |
AAGCTTAGAATTTCAATGGC+AGG | 0.484745 | 5.2:-4135824 | None:intergenic |
TCACATATGGTGCTAACTGC+AGG | 0.490346 | 5.2:+4135794 | MS.gene22574:CDS |
CCAAGCTGAATAACACCATC+AGG | 0.491931 | 5.2:-4134408 | None:intergenic |
ATCTCTAATGAAATATTTGG+AGG | 0.499661 | 5.2:+4136230 | MS.gene22574:CDS |
AAATGATATTCCTGTAGTAA+TGG | 0.500041 | 5.2:+4136778 | MS.gene22574:CDS |
GTGTAGATTTGATTGAAGAA+TGG | 0.500474 | 5.2:+4134680 | MS.gene22574:CDS |
TGTCACGCTCTCTCTCAGCT+CGG | 0.501102 | 5.2:+4134262 | MS.gene22574:CDS |
TGTGGAAGGATTAGAGCAGT+TGG | 0.502576 | 5.2:+4136556 | MS.gene22574:CDS |
AATTTGCCAGCAGGGTTCGA+AGG | 0.512224 | 5.2:-4136146 | None:intergenic |
ATGTATAATGCATTTGTGGA+AGG | 0.513384 | 5.2:+4136542 | MS.gene22574:CDS |
GACTATGAGGCGTGGGAACA+AGG | 0.514495 | 5.2:-4135874 | None:intergenic |
ATGCATTTCCATTATCTGCT+AGG | 0.514780 | 5.2:-4135850 | None:intergenic |
AGCTTAGAATTTCAATGGCA+GGG | 0.517674 | 5.2:-4135823 | None:intergenic |
GACAAGGCGGGGAGCTCCGG+AGG | 0.521383 | 5.2:-4134243 | None:intergenic |
AGCTAAGATCAATGTTACTC+CGG | 0.521490 | 5.2:+4136694 | MS.gene22574:CDS |
TCAAACCCTTCGAACCCTGC+TGG | 0.524906 | 5.2:+4136140 | MS.gene22574:CDS |
AGAGAGAGCGTGACAAGGCG+GGG | 0.526614 | 5.2:-4134254 | None:intergenic |
GGATTATGAATCCGATGATA+CGG | 0.528619 | 5.2:-4134387 | None:intergenic |
TCTCTCTCAGCTCGGGTCAG+AGG | 0.530882 | 5.2:+4134270 | MS.gene22574:CDS |
GACTGTTACCCAGGACTATG+AGG | 0.532638 | 5.2:-4135887 | None:intergenic |
TTACCATGATTTCAGATACA+AGG | 0.534016 | 5.2:+4136474 | MS.gene22574:CDS |
TGTTGGAAGGAGGAGATTGG+CGG | 0.536046 | 5.2:-4134212 | None:intergenic |
TTCCCACGCCTCATAGTCCT+GGG | 0.537875 | 5.2:+4135879 | MS.gene22574:CDS |
CGGGGAGCTCCGGAGGCGGA+AGG | 0.541493 | 5.2:-4134236 | None:intergenic |
CTTTGAAGTCCATGAATCCA+TGG | 0.548428 | 5.2:-4134783 | None:intergenic |
CATCCGTTCATATTTCGGGT+CGG | 0.550467 | 5.2:+4134301 | MS.gene22574:CDS |
GCTAAGATCAATGTTACTCC+GGG | 0.552971 | 5.2:+4136695 | MS.gene22574:CDS |
CATCGGATTCATAATCCTGA+TGG | 0.555300 | 5.2:+4134393 | MS.gene22574:CDS |
ACTGACCTTGCTACTTACCA+TGG | 0.557547 | 5.2:+4134766 | MS.gene22574:CDS |
TGGAAGCGGAAGATCATGAT+CGG | 0.557918 | 5.2:+4136297 | MS.gene22574:CDS |
AAACGAAGAGTTTGTGAGCA+TGG | 0.560825 | 5.2:+4136265 | MS.gene22574:CDS |
ATAACTCCTACATTAAAACT+TGG | 0.562403 | 5.2:-4136365 | None:intergenic |
CGTAAAATGGCGATCTGGGG+TGG | 0.563080 | 5.2:+4136001 | MS.gene22574:CDS |
GGAAGCGGAAGATCATGATC+GGG | 0.568398 | 5.2:+4136298 | MS.gene22574:CDS |
AGCTGAGAGAGAGCGTGACA+AGG | 0.569266 | 5.2:-4134259 | None:intergenic |
AAAATTATAGTGCCTTTGCA+AGG | 0.571998 | 5.2:+4134099 | MS.gene22574:CDS |
CTCCTATAATGAGAATGTTG+TGG | 0.573694 | 5.2:+4136391 | MS.gene22574:CDS |
CATGGCAGAAATCATGGAAG+CGG | 0.576068 | 5.2:+4136283 | MS.gene22574:CDS |
GGCGGAAGGTTGTTGGAAGG+AGG | 0.578316 | 5.2:-4134222 | None:intergenic |
ACCGACTCTCCTTATTACGT+TGG | 0.578516 | 5.2:+4134342 | MS.gene22574:CDS |
ATTTGCCAGCAGGGTTCGAA+GGG | 0.580365 | 5.2:-4136145 | None:intergenic |
GCAGTTAGCACCATATGTGA+AGG | 0.584986 | 5.2:-4135791 | None:intergenic |
TTCGTTCCTATAGTGAAAAG+GGG | 0.594801 | 5.2:+4136639 | MS.gene22574:CDS |
GATTTAATAATTTGCCAGCA+GGG | 0.595062 | 5.2:-4136154 | None:intergenic |
TCGCAGATAATCCGTATCAT+CGG | 0.595899 | 5.2:+4134376 | MS.gene22574:CDS |
AGAAAGTAGAAAAGAGCGCA+AGG | 0.597657 | 5.2:-4134165 | None:intergenic |
ATGGAAGCGCTGCTATACTA+GGG | 0.597721 | 5.2:+4134713 | MS.gene22574:CDS |
GTCACTGTATTGAACCAGGA+TGG | 0.598491 | 5.2:+4136726 | MS.gene22574:CDS |
CCTTGGACAACTCCTTGCAA+AGG | 0.600708 | 5.2:-4134111 | None:intergenic |
GAGTGCACCAGAAGCAGTGG+TGG | 0.601656 | 5.2:+4136584 | MS.gene22574:CDS |
AAGGAGTTGTCCAAGGAACA+GGG | 0.604578 | 5.2:+4134118 | MS.gene22574:CDS |
TCATAAAGACTAACAAGTTG+AGG | 0.605108 | 5.2:+4136510 | MS.gene22574:CDS |
ACCCGAAATATGAACGGATG+CGG | 0.606050 | 5.2:-4134298 | None:intergenic |
ATTGAGTGCACCAGAAGCAG+TGG | 0.606848 | 5.2:+4136581 | MS.gene22574:CDS |
CCTTTGCAAGGAGTTGTCCA+AGG | 0.609185 | 5.2:+4134111 | MS.gene22574:CDS |
TGAGAGAGAGCGTGACAAGG+CGG | 0.612272 | 5.2:-4134256 | None:intergenic |
ATACAGTGACAAGAGGATCC+CGG | 0.612424 | 5.2:-4136713 | None:intergenic |
TCTTGTCACTGTATTGAACC+AGG | 0.618687 | 5.2:+4136722 | MS.gene22574:CDS |
TGAATCCATGGTAAGTAGCA+AGG | 0.622432 | 5.2:-4134771 | None:intergenic |
CAGTTAGCACCATATGTGAA+GGG | 0.623911 | 5.2:-4135790 | None:intergenic |
TACCCAGGACTATGAGGCGT+GGG | 0.625346 | 5.2:-4135881 | None:intergenic |
GGAGGCGGAAGGTTGTTGGA+AGG | 0.630218 | 5.2:-4134225 | None:intergenic |
CTAGGGACACCATCAAATTG+TGG | 0.630370 | 5.2:+4134730 | MS.gene22574:CDS |
GGAAGATCATGATCGGGACA+GGG | 0.632860 | 5.2:+4136304 | MS.gene22574:CDS |
GACCCGACCCGAAATATGAA+CGG | 0.635011 | 5.2:-4134304 | None:intergenic |
ACCAACGTAATAAGGAGAGT+CGG | 0.636299 | 5.2:-4134343 | None:intergenic |
TGGATTCATGGACTTCAAAG+TGG | 0.643980 | 5.2:+4134786 | MS.gene22574:CDS |
CCTATGGTGCAGCTTTGATG+AGG | 0.645473 | 5.2:+4135977 | MS.gene22574:intron |
TGGTTCAATACAGTGACAAG+AGG | 0.646697 | 5.2:-4136720 | None:intergenic |
GGCCGTAAAATGGCGATCTG+GGG | 0.651142 | 5.2:+4135998 | MS.gene22574:CDS |
TTACCCAGGACTATGAGGCG+TGG | 0.652223 | 5.2:-4135882 | None:intergenic |
GGAGTTGTCCAAGGAACAGG+GGG | 0.653313 | 5.2:+4134120 | MS.gene22574:CDS |
GAAGAATGGATTCGTCACAA+TGG | 0.675346 | 5.2:+4134694 | MS.gene22574:CDS |
TAGCAAGGTCAGTGATACTG+AGG | 0.675550 | 5.2:-4134756 | None:intergenic |
AGGAGTTGTCCAAGGAACAG+GGG | 0.684611 | 5.2:+4134119 | MS.gene22574:CDS |
TCGTTCCTATAGTGAAAAGG+GGG | 0.686058 | 5.2:+4136640 | MS.gene22574:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAAATAAAAACAAAAATTA+TGG | + | chr5.2:4135349-4135368 | MS.gene22574:intron | 10.0% |
!! | TTTATAAAACTAAAATAACT+AGG | - | chr5.2:4135265-4135284 | None:intergenic | 10.0% |
!!! | AATTTTATTTATATATAGAC+GGG | + | chr5.2:4135607-4135626 | MS.gene22574:intron | 10.0% |
!! | ATAAAATGACATTGAAATAA+TGG | - | chr5.2:4135293-4135312 | None:intergenic | 15.0% |
!! | ATAATCTCTAATGAAATATT+TGG | + | chr5.2:4136227-4136246 | MS.gene22574:CDS | 15.0% |
!! | TAAAATGACATTGAAATAAT+GGG | - | chr5.2:4135292-4135311 | None:intergenic | 15.0% |
!!! | CAAATATTAAACTGATTTTT+AGG | + | chr5.2:4135316-4135335 | MS.gene22574:intron | 15.0% |
!!! | TGTTTTTATTTTGTTTAACA+TGG | - | chr5.2:4135342-4135361 | None:intergenic | 15.0% |
!! | AAAAATGTATAATGCATTTG+TGG | + | chr5.2:4136538-4136557 | MS.gene22574:CDS | 20.0% |
!! | GTATATATTAGTGTTAAAGA+TGG | - | chr5.2:4135213-4135232 | None:intergenic | 20.0% |
!! | TCAATGTAGTAAAACAAAAA+CGG | - | chr5.2:4136754-4136773 | None:intergenic | 20.0% |
!!! | TAATGATAGTTTTAAACCTA+TGG | + | chr5.2:4135961-4135980 | MS.gene22574:intron | 20.0% |
!!! | TTTTATGCATACTATTACTA+AGG | + | chr5.2:4135526-4135545 | MS.gene22574:intron | 20.0% |
! | AAATGATATTCCTGTAGTAA+TGG | + | chr5.2:4136778-4136797 | MS.gene22574:CDS | 25.0% |
! | AGAAAAGGAATAATAACTCA+CGG | - | chr5.2:4134448-4134467 | None:intergenic | 25.0% |
! | AGATTGAATCAATTCTATCT+TGG | + | chr5.2:4134869-4134888 | MS.gene22574:intron | 25.0% |
! | ATAACTCCTACATTAAAACT+TGG | - | chr5.2:4136368-4136387 | None:intergenic | 25.0% |
! | ATCTCTAATGAAATATTTGG+AGG | + | chr5.2:4136230-4136249 | MS.gene22574:CDS | 25.0% |
! | GAGAATTAAGATAGAAACAA+AGG | - | chr5.2:4135709-4135728 | None:intergenic | 25.0% |
! | TCTTAATTCTCTAATCATAC+AGG | + | chr5.2:4135718-4135737 | MS.gene22574:intron | 25.0% |
! | TTAAATTACCATTAGTGTCT+AGG | + | chr5.2:4134548-4134567 | MS.gene22574:intron | 25.0% |
! | TTGTTTAAACCAACGTAATA+AGG | - | chr5.2:4134354-4134373 | None:intergenic | 25.0% |
!! | AGATAACTAAACAAGGATTT+TGG | - | chr5.2:4135925-4135944 | None:intergenic | 25.0% |
!! | TATGTAGCATTTTAGATTGA+AGG | + | chr5.2:4134948-4134967 | MS.gene22574:intron | 25.0% |
!!! | TATGTTCCAAGTTTTAATGT+AGG | + | chr5.2:4136359-4136378 | MS.gene22574:CDS | 25.0% |
AAAATTATAGTGCCTTTGCA+AGG | + | chr5.2:4134099-4134118 | MS.gene22574:CDS | 30.0% | |
AGAAACATTACTTGATCTTC+TGG | + | chr5.2:4136178-4136197 | MS.gene22574:CDS | 30.0% | |
ATATTGGATCAAATAGTCCA+TGG | - | chr5.2:4135394-4135413 | None:intergenic | 30.0% | |
ATCCACAACATTCTCATTAT+AGG | - | chr5.2:4136396-4136415 | None:intergenic | 30.0% | |
ATGTATAATGCATTTGTGGA+AGG | + | chr5.2:4136542-4136561 | MS.gene22574:CDS | 30.0% | |
ATTCGTTCCTATAGTGAAAA+GGG | + | chr5.2:4136638-4136657 | MS.gene22574:CDS | 30.0% | |
GAAGAGTAGATAACTAAACA+AGG | - | chr5.2:4135932-4135951 | None:intergenic | 30.0% | |
GGTTCATATAGTGTTTGATT+TGG | + | chr5.2:4136325-4136344 | MS.gene22574:CDS | 30.0% | |
GTGTAGATTTGATTGAAGAA+TGG | + | chr5.2:4134680-4134699 | MS.gene22574:CDS | 30.0% | |
TCATAAAGACTAACAAGTTG+AGG | + | chr5.2:4136510-4136529 | MS.gene22574:CDS | 30.0% | |
TTACCATGATTTCAGATACA+AGG | + | chr5.2:4136474-4136493 | MS.gene22574:CDS | 30.0% | |
! | AAACCTTGTATCTGAAATCA+TGG | - | chr5.2:4136480-4136499 | None:intergenic | 30.0% |
! | AATAATAACTCACGGTGTTT+TGG | - | chr5.2:4134440-4134459 | None:intergenic | 30.0% |
! | AGTAACAAGTTGAATCAATC+AGG | - | chr5.2:4134847-4134866 | None:intergenic | 30.0% |
! | ATAATAACTCACGGTGTTTT+GGG | - | chr5.2:4134439-4134458 | None:intergenic | 30.0% |
! | GATTTAATAATTTGCCAGCA+GGG | - | chr5.2:4136157-4136176 | None:intergenic | 30.0% |
! | TCTAAAATGCTACATAGCTT+TGG | - | chr5.2:4134944-4134963 | None:intergenic | 30.0% |
!! | AAGCTTTAAGATCCTCATAT+TGG | - | chr5.2:4135410-4135429 | None:intergenic | 30.0% |
!!! | TGAGAATTGTGCCATTTTTT+TGG | - | chr5.2:4136423-4136442 | None:intergenic | 30.0% |
AAACGTAGTCAAAAAGTTCG+TGG | + | chr5.2:4136107-4136126 | MS.gene22574:CDS | 35.0% | |
AAGCTTAGAATTTCAATGGC+AGG | - | chr5.2:4135827-4135846 | None:intergenic | 35.0% | |
AATTATGGTCCATGATCTGT+TGG | + | chr5.2:4135364-4135383 | MS.gene22574:intron | 35.0% | |
AGCTAAGATCAATGTTACTC+CGG | + | chr5.2:4136694-4136713 | MS.gene22574:CDS | 35.0% | |
AGCTTAGAATTTCAATGGCA+GGG | - | chr5.2:4135826-4135845 | None:intergenic | 35.0% | |
ATGCATTTCCATTATCTGCT+AGG | - | chr5.2:4135853-4135872 | None:intergenic | 35.0% | |
ATTAACTCAAAAGCTGAGTG+TGG | + | chr5.2:4135554-4135573 | MS.gene22574:intron | 35.0% | |
CATTCGTTCCTATAGTGAAA+AGG | + | chr5.2:4136637-4136656 | MS.gene22574:CDS | 35.0% | |
CTCCTATAATGAGAATGTTG+TGG | + | chr5.2:4136391-4136410 | MS.gene22574:CDS | 35.0% | |
GAATCAATCAGGAAGAACAA+AGG | - | chr5.2:4134836-4134855 | None:intergenic | 35.0% | |
GCAGAAGCTTAGAATTTCAA+TGG | - | chr5.2:4135831-4135850 | None:intergenic | 35.0% | |
GGACTATTTGATCCAATATG+AGG | + | chr5.2:4135395-4135414 | MS.gene22574:intron | 35.0% | |
GGATTATGAATCCGATGATA+CGG | - | chr5.2:4134390-4134409 | None:intergenic | 35.0% | |
GTAATAAGCAATTGCTGAGT+TGG | - | chr5.2:4136458-4136477 | None:intergenic | 35.0% | |
GTTCGATGTTTGATATGTAG+CGG | + | chr5.2:4135072-4135091 | MS.gene22574:intron | 35.0% | |
TACTAACACCTAGACACTAA+TGG | - | chr5.2:4134559-4134578 | None:intergenic | 35.0% | |
TATGAAATTGACTGTTACCC+AGG | - | chr5.2:4135899-4135918 | None:intergenic | 35.0% | |
TTAGTTATCTACTCTTCTGC+AGG | + | chr5.2:4135935-4135954 | MS.gene22574:intron | 35.0% | |
TTCGTTCCTATAGTGAAAAG+GGG | + | chr5.2:4136639-4136658 | MS.gene22574:CDS | 35.0% | |
TTCTCTAATCATACAGGTTG+TGG | + | chr5.2:4135724-4135743 | MS.gene22574:intron | 35.0% | |
TTTCTTCAACCCTTCACATA+TGG | + | chr5.2:4135781-4135800 | MS.gene22574:CDS | 35.0% | |
! | ATTCCTTTTCTCTTCTCTGT+AGG | + | chr5.2:4134457-4134476 | MS.gene22574:intron | 35.0% |
! | CGATTTAATAATTTGCCAGC+AGG | - | chr5.2:4136158-4136177 | None:intergenic | 35.0% |
! | TGGTTTCATGTCTCAAGTTT+TGG | + | chr5.2:4135748-4135767 | MS.gene22574:CDS | 35.0% |
!! | GTAGCGGACAATACATATAT+AGG | + | chr5.2:4135088-4135107 | MS.gene22574:intron | 35.0% |
!!! | GAATTGTGCCATTTTTTTGG+AGG | - | chr5.2:4136420-4136439 | None:intergenic | 35.0% |
AAACAAAAACGGAACCATCC+TGG | - | chr5.2:4136743-4136762 | None:intergenic | 40.0% | |
AAACGAAGAGTTTGTGAGCA+TGG | + | chr5.2:4136265-4136284 | MS.gene22574:CDS | 40.0% | |
AACCGCATCCGTTCATATTT+CGG | + | chr5.2:4134296-4134315 | MS.gene22574:CDS | 40.0% | |
AATGTGTGGTTGCACGAATA+TGG | + | chr5.2:4135459-4135478 | MS.gene22574:intron | 40.0% | |
ACCAACGTAATAAGGAGAGT+CGG | - | chr5.2:4134346-4134365 | None:intergenic | 40.0% | |
AGCAACTTCAAGTGAATGCA+AGG | - | chr5.2:4135663-4135682 | None:intergenic | 40.0% | |
ATGCCTACAGAGAAGAGAAA+AGG | - | chr5.2:4134463-4134482 | None:intergenic | 40.0% | |
ATTCATGGACTTCAAAGTGG+TGG | + | chr5.2:4134789-4134808 | MS.gene22574:intron | 40.0% | |
CAGTTAGCACCATATGTGAA+GGG | - | chr5.2:4135793-4135812 | None:intergenic | 40.0% | |
CATAAAACACTGACACACAC+CGG | - | chr5.2:4134595-4134614 | None:intergenic | 40.0% | |
CATATGCCAGATAGATAGAG+AGG | - | chr5.2:4135636-4135655 | None:intergenic | 40.0% | |
CATCGGATTCATAATCCTGA+TGG | + | chr5.2:4134393-4134412 | MS.gene22574:CDS | 40.0% | |
CATCGTGGATTTATGAAGCA+CGG | - | chr5.2:4135129-4135148 | None:intergenic | 40.0% | |
CTAGGTGTTAGTATCGTGTT+TGG | + | chr5.2:4134566-4134585 | MS.gene22574:intron | 40.0% | |
GATTTATGAAGCACGGACAT+TGG | - | chr5.2:4135122-4135141 | None:intergenic | 40.0% | |
GCTAAGATCAATGTTACTCC+GGG | + | chr5.2:4136695-4136714 | MS.gene22574:CDS | 40.0% | |
GTATTCTTCTCTCTTCATCG+TGG | - | chr5.2:4135144-4135163 | None:intergenic | 40.0% | |
TCGCAGATAATCCGTATCAT+CGG | + | chr5.2:4134376-4134395 | MS.gene22574:CDS | 40.0% | |
TCGTTCCTATAGTGAAAAGG+GGG | + | chr5.2:4136640-4136659 | MS.gene22574:CDS | 40.0% | |
TCTTGTCACTGTATTGAACC+AGG | + | chr5.2:4136722-4136741 | MS.gene22574:CDS | 40.0% | |
TGAATCCATGGTAAGTAGCA+AGG | - | chr5.2:4134774-4134793 | None:intergenic | 40.0% | |
TGGATTCATGGACTTCAAAG+TGG | + | chr5.2:4134786-4134805 | MS.gene22574:CDS | 40.0% | |
TGGTTCAATACAGTGACAAG+AGG | - | chr5.2:4136723-4136742 | None:intergenic | 40.0% | |
TGTGAAGGGTTGAAGAAAAC+TGG | - | chr5.2:4135779-4135798 | None:intergenic | 40.0% | |
TGTGGATGCCTCCAAAAAAA+TGG | + | chr5.2:4136409-4136428 | MS.gene22574:CDS | 40.0% | |
TTCATGGACTTCAAAGTGGT+GGG | + | chr5.2:4134790-4134809 | MS.gene22574:intron | 40.0% | |
TTTGACTACGTTTCTTCGCT+TGG | - | chr5.2:4136100-4136119 | None:intergenic | 40.0% | |
! | AGAAAGTAGAAAAGAGCGCA+AGG | - | chr5.2:4134168-4134187 | None:intergenic | 40.0% |
! | CCTGTAGTAATGGAACGAAT+CGG | + | chr5.2:4136788-4136807 | MS.gene22574:CDS | 40.0% |
! | CTGTAGTAATGGAACGAATC+GGG | + | chr5.2:4136789-4136808 | MS.gene22574:CDS | 40.0% |
! | GAAGAACAAAGGCACAAGAT+AGG | - | chr5.2:4134825-4134844 | None:intergenic | 40.0% |
! | GAAGAATGGATTCGTCACAA+TGG | + | chr5.2:4134694-4134713 | MS.gene22574:CDS | 40.0% |
! | GTGTGGTCATCTCATTTTCT+AGG | + | chr5.2:4135571-4135590 | MS.gene22574:intron | 40.0% |
! | TGCTACTTACCATGGATTCA+TGG | + | chr5.2:4134774-4134793 | MS.gene22574:CDS | 40.0% |
! | TGGTCATCTCATTTTCTAGG+AGG | + | chr5.2:4135574-4135593 | MS.gene22574:intron | 40.0% |
!! | CTTTGAAGTCCATGAATCCA+TGG | - | chr5.2:4134786-4134805 | None:intergenic | 40.0% |
!! | GGTCATCTCATTTTCTAGGA+GGG | + | chr5.2:4135575-4135594 | MS.gene22574:intron | 40.0% |
!! | TTAGTATCGTGTTTGGTGTC+CGG | + | chr5.2:4134573-4134592 | MS.gene22574:intron | 40.0% |
AAAAAAGTCCCCCTGTTCCT+TGG | - | chr5.2:4134131-4134150 | None:intergenic | 45.0% | |
AAGGAGTTGTCCAAGGAACA+GGG | + | chr5.2:4134118-4134137 | MS.gene22574:CDS | 45.0% | |
ACCCGAAATATGAACGGATG+CGG | - | chr5.2:4134301-4134320 | None:intergenic | 45.0% | |
ACCGCATCCGTTCATATTTC+GGG | + | chr5.2:4134297-4134316 | MS.gene22574:CDS | 45.0% | |
AGCTTCTGCCTAGCAGATAA+TGG | + | chr5.2:4135842-4135861 | MS.gene22574:CDS | 45.0% | |
AGGAGAGTCGGTTGTGATTA+TGG | - | chr5.2:4134334-4134353 | None:intergenic | 45.0% | |
ATACAGTGACAAGAGGATCC+CGG | - | chr5.2:4136716-4136735 | None:intergenic | 45.0% | |
CATGATCTGTTGGAAGACCA+TGG | + | chr5.2:4135374-4135393 | MS.gene22574:intron | 45.0% | |
CATGGCAGAAATCATGGAAG+CGG | + | chr5.2:4136283-4136302 | MS.gene22574:CDS | 45.0% | |
CATGGTCTTCCAACAGATCA+TGG | - | chr5.2:4135376-4135395 | None:intergenic | 45.0% | |
CCAAGCTGAATAACACCATC+AGG | - | chr5.2:4134411-4134430 | None:intergenic | 45.0% | |
CTAATCATACAGGTTGTGGC+TGG | + | chr5.2:4135728-4135747 | MS.gene22574:intron | 45.0% | |
CTAGGGACACCATCAAATTG+TGG | + | chr5.2:4134730-4134749 | MS.gene22574:CDS | 45.0% | |
CTATAGTGAAAAGGGGGAAC+TGG | + | chr5.2:4136646-4136665 | MS.gene22574:CDS | 45.0% | |
CTGAGGCAACCACAATTTGA+TGG | - | chr5.2:4134742-4134761 | None:intergenic | 45.0% | |
GCAGTTAGCACCATATGTGA+AGG | - | chr5.2:4135794-4135813 | None:intergenic | 45.0% | |
GCTTTGATGAGGCCGTAAAA+TGG | + | chr5.2:4135988-4136007 | MS.gene22574:intron | 45.0% | |
GTCACTGTATTGAACCAGGA+TGG | + | chr5.2:4136726-4136745 | MS.gene22574:CDS | 45.0% | |
GTGGAAGGATTAGAGCAGTT+GGG | + | chr5.2:4136557-4136576 | MS.gene22574:CDS | 45.0% | |
TAGCAAGGTCAGTGATACTG+AGG | - | chr5.2:4134759-4134778 | None:intergenic | 45.0% | |
TCTTCGCTTGGTTGAAAGCT+TGG | - | chr5.2:4136088-4136107 | None:intergenic | 45.0% | |
TGGAAGCGGAAGATCATGAT+CGG | + | chr5.2:4136297-4136316 | MS.gene22574:CDS | 45.0% | |
TGTGAGCATGGCAGAAATCA+TGG | + | chr5.2:4136277-4136296 | MS.gene22574:CDS | 45.0% | |
TGTGGAAGGATTAGAGCAGT+TGG | + | chr5.2:4136556-4136575 | MS.gene22574:CDS | 45.0% | |
! | ACCGACTCTCCTTATTACGT+TGG | + | chr5.2:4134342-4134361 | MS.gene22574:CDS | 45.0% |
! | ACTGACCTTGCTACTTACCA+TGG | + | chr5.2:4134766-4134785 | MS.gene22574:CDS | 45.0% |
! | ATCCGTTCATATTTCGGGTC+GGG | + | chr5.2:4134302-4134321 | MS.gene22574:CDS | 45.0% |
! | CAGTTCCCCCTTTTCACTAT+AGG | - | chr5.2:4136648-4136667 | None:intergenic | 45.0% |
! | CATCCGTTCATATTTCGGGT+CGG | + | chr5.2:4134301-4134320 | MS.gene22574:CDS | 45.0% |
! | CCGATTCGTTCCATTACTAC+AGG | - | chr5.2:4136791-4136810 | None:intergenic | 45.0% |
! | CGGTGTGTGTCAGTGTTTTA+TGG | + | chr5.2:4134593-4134612 | MS.gene22574:intron | 45.0% |
! | TCACATATGGTGCTAACTGC+AGG | + | chr5.2:4135794-4135813 | MS.gene22574:CDS | 45.0% |
!! | AATGGAAGCGCTGCTATACT+AGG | + | chr5.2:4134712-4134731 | MS.gene22574:CDS | 45.0% |
!! | AGCTTGCTAGATAGATGTCG+CGG | + | chr5.2:4135425-4135444 | MS.gene22574:intron | 45.0% |
!! | ATGGAAGCGCTGCTATACTA+GGG | + | chr5.2:4134713-4134732 | MS.gene22574:CDS | 45.0% |
!! | CCTGATGGTGTTATTCAGCT+TGG | + | chr5.2:4134408-4134427 | MS.gene22574:CDS | 45.0% |
!!! | AAGGAACAGGGGGACTTTTT+TGG | + | chr5.2:4134130-4134149 | MS.gene22574:CDS | 45.0% |
!!! | AGGAACAGGGGGACTTTTTT+GGG | + | chr5.2:4134131-4134150 | MS.gene22574:CDS | 45.0% |
!!! | TAATTTTATTTATATATAGA+CGG | + | chr5.2:4135606-4135625 | MS.gene22574:intron | 5.0% |
AATTTGCCAGCAGGGTTCGA+AGG | - | chr5.2:4136149-4136168 | None:intergenic | 50.0% | |
ACTCACACATGTCGAACACC+GGG | - | chr5.2:4134488-4134507 | None:intergenic | 50.0% | |
AGGAGTTGTCCAAGGAACAG+GGG | + | chr5.2:4134119-4134138 | MS.gene22574:CDS | 50.0% | |
AGGCCGTAAAATGGCGATCT+GGG | + | chr5.2:4135997-4136016 | MS.gene22574:CDS | 50.0% | |
ATTGAGTGCACCAGAAGCAG+TGG | + | chr5.2:4136581-4136600 | MS.gene22574:CDS | 50.0% | |
ATTTGCCAGCAGGGTTCGAA+GGG | - | chr5.2:4136148-4136167 | None:intergenic | 50.0% | |
CAAGGAGTTGTCCAAGGAAC+AGG | + | chr5.2:4134117-4134136 | MS.gene22574:CDS | 50.0% | |
CCTCATCAAAGCTGCACCAT+AGG | - | chr5.2:4135980-4135999 | None:intergenic | 50.0% | |
CCTTGGACAACTCCTTGCAA+AGG | - | chr5.2:4134114-4134133 | None:intergenic | 50.0% | |
CCTTTGCAAGGAGTTGTCCA+AGG | + | chr5.2:4134111-4134130 | MS.gene22574:CDS | 50.0% | |
CGGTCGTAGACTGTAATGTG+TGG | + | chr5.2:4135445-4135464 | MS.gene22574:intron | 50.0% | |
GACCCGACCCGAAATATGAA+CGG | - | chr5.2:4134307-4134326 | None:intergenic | 50.0% | |
GACTCACACATGTCGAACAC+CGG | - | chr5.2:4134489-4134508 | None:intergenic | 50.0% | |
GACTGTTACCCAGGACTATG+AGG | - | chr5.2:4135890-4135909 | None:intergenic | 50.0% | |
GGAAGATCATGATCGGGACA+GGG | + | chr5.2:4136304-4136323 | MS.gene22574:CDS | 50.0% | |
GGAAGCGGAAGATCATGATC+GGG | + | chr5.2:4136298-4136317 | MS.gene22574:CDS | 50.0% | |
GGGTGTCCTCTCTATCTATC+TGG | + | chr5.2:4135627-4135646 | MS.gene22574:intron | 50.0% | |
GGTTGTTGGAAGGAGGAGAT+TGG | - | chr5.2:4134218-4134237 | None:intergenic | 50.0% | |
TCTTCTCTGTAGGCATGTCC+CGG | + | chr5.2:4134467-4134486 | MS.gene22574:intron | 50.0% | |
TGTTGGAAGGAGGAGATTGG+CGG | - | chr5.2:4134215-4134234 | None:intergenic | 50.0% | |
! | CCTATGGTGCAGCTTTGATG+AGG | + | chr5.2:4135977-4135996 | MS.gene22574:intron | 50.0% |
!! | CACCCCAGATCGCCATTTTA+CGG | - | chr5.2:4136003-4136022 | None:intergenic | 50.0% |
!!! | GGAACAGGGGGACTTTTTTG+GGG | + | chr5.2:4134132-4134151 | MS.gene22574:CDS | 50.0% |
AAAAGGGGGAACTGGAGCTC+TGG | + | chr5.2:4136654-4136673 | MS.gene22574:CDS | 55.0% | |
AAAGGGGGAACTGGAGCTCT+GGG | + | chr5.2:4136655-4136674 | MS.gene22574:CDS | 55.0% | |
CGGAAGATCATGATCGGGAC+AGG | + | chr5.2:4136303-4136322 | MS.gene22574:CDS | 55.0% | |
CGTAAAATGGCGATCTGGGG+TGG | + | chr5.2:4136001-4136020 | MS.gene22574:CDS | 55.0% | |
GACTATGAGGCGTGGGAACA+AGG | - | chr5.2:4135877-4135896 | None:intergenic | 55.0% | |
GAGGCCGTAAAATGGCGATC+TGG | + | chr5.2:4135996-4136015 | MS.gene22574:CDS | 55.0% | |
GCAAAAGCCACCACTGCTTC+TGG | - | chr5.2:4136594-4136613 | None:intergenic | 55.0% | |
GGAGTTGTCCAAGGAACAGG+GGG | + | chr5.2:4134120-4134139 | MS.gene22574:CDS | 55.0% | |
GGCCGTAAAATGGCGATCTG+GGG | + | chr5.2:4135998-4136017 | MS.gene22574:CDS | 55.0% | |
TACCCAGGACTATGAGGCGT+GGG | - | chr5.2:4135884-4135903 | None:intergenic | 55.0% | |
TCAAACCCTTCGAACCCTGC+TGG | + | chr5.2:4136140-4136159 | MS.gene22574:CDS | 55.0% | |
TGTCACGCTCTCTCTCAGCT+CGG | + | chr5.2:4134262-4134281 | MS.gene22574:CDS | 55.0% | |
TTACCCAGGACTATGAGGCG+TGG | - | chr5.2:4135885-4135904 | None:intergenic | 55.0% | |
TTCCAACAACCTTCCGCCTC+CGG | + | chr5.2:4134227-4134246 | MS.gene22574:CDS | 55.0% | |
TTCCCACGCCTCATAGTCCT+GGG | + | chr5.2:4135879-4135898 | MS.gene22574:CDS | 55.0% | |
! | AGCTGAGAGAGAGCGTGACA+AGG | - | chr5.2:4134262-4134281 | None:intergenic | 55.0% |
! | CAGTGGTGGCTTTTGCTGCT+GGG | + | chr5.2:4136598-4136617 | MS.gene22574:CDS | 55.0% |
! | TGAGAGAGAGCGTGACAAGG+CGG | - | chr5.2:4134259-4134278 | None:intergenic | 55.0% |
GAGTGCACCAGAAGCAGTGG+TGG | + | chr5.2:4136584-4136603 | MS.gene22574:CDS | 60.0% | |
GGAGGCGGAAGGTTGTTGGA+AGG | - | chr5.2:4134228-4134247 | None:intergenic | 60.0% | |
GGCGGAAGGTTGTTGGAAGG+AGG | - | chr5.2:4134225-4134244 | None:intergenic | 60.0% | |
GTCACGCTCTCTCTCAGCTC+GGG | + | chr5.2:4134263-4134282 | MS.gene22574:CDS | 60.0% | |
GTTCCCACGCCTCATAGTCC+TGG | + | chr5.2:4135878-4135897 | MS.gene22574:CDS | 60.0% | |
TCTCTCTCAGCTCGGGTCAG+AGG | + | chr5.2:4134270-4134289 | MS.gene22574:CDS | 60.0% | |
! | AGAGAGAGCGTGACAAGGCG+GGG | - | chr5.2:4134257-4134276 | None:intergenic | 60.0% |
! | GAGAGAGAGCGTGACAAGGC+GGG | - | chr5.2:4134258-4134277 | None:intergenic | 60.0% |
! | GCAGTGGTGGCTTTTGCTGC+TGG | + | chr5.2:4136597-4136616 | MS.gene22574:CDS | 60.0% |
CTCCGGAGGCGGAAGGTTGT+TGG | - | chr5.2:4134232-4134251 | None:intergenic | 65.0% | |
CGTGACAAGGCGGGGAGCTC+CGG | - | chr5.2:4134249-4134268 | None:intergenic | 70.0% | |
AAGGCGGGGAGCTCCGGAGG+CGG | - | chr5.2:4134243-4134262 | None:intergenic | 75.0% | |
GACAAGGCGGGGAGCTCCGG+AGG | - | chr5.2:4134246-4134265 | None:intergenic | 75.0% | |
! | CGGGGAGCTCCGGAGGCGGA+AGG | - | chr5.2:4134239-4134258 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 4134096 | 4136835 | 4134096 | ID=MS.gene22574 |
chr5.2 | mRNA | 4134096 | 4136835 | 4134096 | ID=MS.gene22574.t1;Parent=MS.gene22574 |
chr5.2 | exon | 4134096 | 4134446 | 4134096 | ID=MS.gene22574.t1.exon1;Parent=MS.gene22574.t1 |
chr5.2 | CDS | 4134096 | 4134446 | 4134096 | ID=cds.MS.gene22574.t1;Parent=MS.gene22574.t1 |
chr5.2 | exon | 4134676 | 4134807 | 4134676 | ID=MS.gene22574.t1.exon2;Parent=MS.gene22574.t1 |
chr5.2 | CDS | 4134676 | 4134807 | 4134676 | ID=cds.MS.gene22574.t1;Parent=MS.gene22574.t1 |
chr5.2 | exon | 4135740 | 4135900 | 4135740 | ID=MS.gene22574.t1.exon3;Parent=MS.gene22574.t1 |
chr5.2 | CDS | 4135740 | 4135900 | 4135740 | ID=cds.MS.gene22574.t1;Parent=MS.gene22574.t1 |
chr5.2 | exon | 4135989 | 4136835 | 4135989 | ID=MS.gene22574.t1.exon4;Parent=MS.gene22574.t1 |
chr5.2 | CDS | 4135989 | 4136835 | 4135989 | ID=cds.MS.gene22574.t1;Parent=MS.gene22574.t1 |
Gene Sequence |
Protein sequence |