AlfalfaGEDB | MS.gene23918

M. sativa cultivar XinJiangDaYe / MS.gene23918

KEGG: K17613
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23918.t1	XP_013462068.1	94	912	24	2	47	927	1043	1954	0.00E+00	1694.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23918.t1	F4JV59	62.2	860	279	8	47	864	984	1839	3.7e-296	1018.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23918.t1	A0A072V401	94.0	912	24	2	47	927	1043	1954	0.0e+00	1694.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene23918	0.829903	3.97E-55	-1.69E-46
MS.gene049159	MS.gene23918	0.83217	1.10E-55	-1.69E-46
MS.gene049190	MS.gene23918	0.829163	6.00E-55	-1.69E-46
MS.gene049404	MS.gene23918	0.811588	6.50E-51	-1.69E-46
MS.gene049501	MS.gene23918	0.816396	5.65E-52	-1.69E-46
MS.gene049672	MS.gene23918	0.800716	1.26E-48	-1.69E-46
MS.gene049824	MS.gene23918	0.805691	1.18E-49	-1.69E-46
MS.gene049850	MS.gene23918	0.83943	1.59E-57	-1.69E-46
MS.gene050020	MS.gene23918	0.81349	2.49E-51	-1.69E-46
MS.gene050156	MS.gene23918	0.829828	4.14E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23918.t1	MTR_3g110417	93.969	912	24	2	47	927	1043	1954	0.0	1770
MS.gene23918.t1	MTR_3g110417	93.969	912	24	2	47	927	1005	1916	0.0	1768

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene23918.t1	AT4G32820	62.065	862	281	8	47	866	984	1841	1041
MS.gene23918.t1	AT4G32820	62.065	862	281	8	47	866	993	1850	1040
MS.gene23918.t1	AT4G32820	62.840	845	275	7	47	856	984	1824	1039

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Find 200 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACCATGAAGAGTTG+GGG	0.650912	3.1:-88445762	None:intergenic
AAATAATAGTTTCAAGCGTG+AGG	0.577070	3.1:-88441965	None:intergenic
AAATACTTTCCGATAGCCAC+TGG	0.524738	3.1:-88444287	None:intergenic
AACAAATTCTTCCCCTTCCT+TGG	0.359521	3.1:-88440573	None:intergenic
AACATCAGCACACTGTTCCT+TGG	0.451005	3.1:-88439919	None:intergenic
AACGTGCATATGTTTCTCTC+CGG	0.447127	3.1:+88443103	MS.gene23918:CDS
AAGACCATGTTTCCTGATGT+GGG	0.598107	3.1:+88440264	MS.gene23918:CDS
AATGCCTTTAGATATTCCTT+CGG	0.511289	3.1:-88439615	None:intergenic
ACACTTTCTTCAGCCACCAG+AGG	0.659604	3.1:+88440134	MS.gene23918:CDS
ACAGAAGATTCCTTTGCATA+AGG	0.439245	3.1:-88439957	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAACCAGATTATGTT+TGG	-	chr3.1:88443561-88443580	None:intergenic	30.0%
AAAATTACCATGAAGAGTTG+GGG	-	chr3.1:88445765-88445784	None:intergenic	30.0%
AAATAATAGTTTCAAGCGTG+AGG	-	chr3.1:88441968-88441987	None:intergenic	30.0%
AAATCCAAACATAATCTGGT+TGG	+	chr3.1:88443554-88443573	MS.gene23918:intron	30.0%
AACATTTGGATGGAATGTTT+AGG	-	chr3.1:88441119-88441138	None:intergenic	30.0%
AACTTCCAAATATACTCTAG+AGG	-	chr3.1:88443585-88443604	None:intergenic	30.0%
AAGCAAGTATCTAAAAGCTT+AGG	-	chr3.1:88445390-88445409	None:intergenic	30.0%
AATGCCTTTAGATATTCCTT+CGG	-	chr3.1:88439618-88439637	None:intergenic	30.0%
ACAGAATCAATATGTTTACC+TGG	-	chr3.1:88441332-88441351	None:intergenic	30.0%
ACAGATCTCTGATCATAAAA+TGG	-	chr3.1:88441649-88441668	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	88439531	88446054	88439531	ID=MS.gene23918
chr3.1	mRNA	88439531	88446054	88439531	ID=MS.gene23918.t1;Parent=MS.gene23918
chr3.1	exon	88439531	88439665	88439531	ID=MS.gene23918.t1.exon1;Parent=MS.gene23918.t1
chr3.1	CDS	88439531	88439665	88439531	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88439903	88439977	88439903	ID=MS.gene23918.t1.exon2;Parent=MS.gene23918.t1
chr3.1	CDS	88439903	88439977	88439903	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88440114	88440322	88440114	ID=MS.gene23918.t1.exon3;Parent=MS.gene23918.t1
chr3.1	CDS	88440114	88440322	88440114	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88440541	88440685	88440541	ID=MS.gene23918.t1.exon4;Parent=MS.gene23918.t1
chr3.1	CDS	88440541	88440685	88440541	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88440820	88440975	88440820	ID=MS.gene23918.t1.exon5;Parent=MS.gene23918.t1
chr3.1	CDS	88440820	88440975	88440820	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88441589	88441746	88441589	ID=MS.gene23918.t1.exon6;Parent=MS.gene23918.t1
chr3.1	CDS	88441589	88441746	88441589	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88441828	88442020	88441828	ID=MS.gene23918.t1.exon7;Parent=MS.gene23918.t1
chr3.1	CDS	88441828	88442020	88441828	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88442191	88442573	88442191	ID=MS.gene23918.t1.exon8;Parent=MS.gene23918.t1
chr3.1	CDS	88442191	88442573	88442191	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88442957	88443137	88442957	ID=MS.gene23918.t1.exon9;Parent=MS.gene23918.t1
chr3.1	CDS	88442957	88443137	88442957	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88444260	88444489	88444260	ID=MS.gene23918.t1.exon10;Parent=MS.gene23918.t1
chr3.1	CDS	88444260	88444489	88444260	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88444631	88445294	88444631	ID=MS.gene23918.t1.exon11;Parent=MS.gene23918.t1
chr3.1	CDS	88444631	88445294	88444631	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88445704	88445776	88445704	ID=MS.gene23918.t1.exon12;Parent=MS.gene23918.t1
chr3.1	CDS	88445704	88445776	88445704	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1
chr3.1	exon	88445873	88446054	88445873	ID=MS.gene23918.t1.exon13;Parent=MS.gene23918.t1
chr3.1	CDS	88445873	88446054	88445873	ID=cds.MS.gene23918.t1;Parent=MS.gene23918.t1

Gene Sequence

>MS.gene23918

ATGGAAGATTCAAAATCTGATACATTAGATATCCGATGGATTGGACCAGAATTGATGAAATTACCTCTGTCAAAAAGGATGTTTCCGAAGGAATATCTAAAGGCATTTCATGTTGCAAAGTTCAGAATAAAGACAGTAAGGAAGAAGAGTCTGAAAATCACTTGAGTTCTGGGACTGACTGTCAGTTAGTTAAGGGTGAAAATTCATGCAATCAATTGATTGAATGTGTAAATGAACTTTCAGAAGATGAAAGGGAAGAACTTGAGTCTATCATTGACAGTGCATTAGATCAGTGCTTTTCTGTTTATATGGATTAAACCTAAGGTCTGATTCATCCTATGAAGATGATCTAGTGATGCACAAAAATTCAAGCCGGGAGATTATCAGACCAAGGAACAGTGTGCTGATGTTTTCAAGTATGTTCTTCCTTATGCAAAGGAATCTTCTGTGAGTACTCCTCTATCTTTAATTTGTATATGTTAGCTTGTTTACACAATGTGATGCCAAAAATTGCAATTTTTTTATTTGTTTTTGCTAAACATTTTTATGTTTCTTAGAAAACTGGACTGGTCAAGCTCCGTAGAGTTTAAGAGCTATCAGGAAACACTTTCTTCAGCCACCAGAGGACCTCTTGACAGGAAATCCAATTGATAATTTCCTAGATGATCCTAATCTATGTGAAGATAAACTATCAGAGGAGGCTGGGTCTGAAGGATTTCTTGAAACTATAACTAAGACCATGTTTCCTGATGTGGGAGGTCTTGGACAGTATAACACAACACTGTTGAAGAGGTATACATTTACACCATACTGTTTTTTTTTTCCACACACACACATATATTATTCTTAACTTGTTTCCTATGAATCATATTTAATGGCTAATATATATCCATGATATTCCTTGTTTTTATCTTCTTAGGTTTATCTCGGTTTTTTTACTTTCAGGTCTGAGCCATACTTGGATGTCTACTGTAACTTGTATCATTTCTTGGCTGTGTCCGAGGAATGAGTGCAACAGATAAATGGCCTGGATTTGTGCTGACCAAGGAAGGGGAAGAATTTGTTGAGCAAAATGCTAAGCTCTTCAAATATGATCTCATGTACAATCCTCTGCGCTTTGAAAGCTGGCAGCGACTTGGAAATATTTATGATGAGGTAAGTTTAAATGCAATTTGGCTTATTAAAACCTTGATTCTTCGGAATATTCATATGAACAACGCGTCTTGATGTCTTTAAACCTGTTAAACATTATAAAATTTCATATATGTTTCTTGGTTGCACCGAGCCAGGAAGTAGATTTGTTACTTAACGATGGTAGCAAGCACATTAACGTAGTAGGATGGAGGAAGAATCCTACTTTATCTGAGAGAGTGGAAACAAGCCGAAGAAGGAGTAGACGGTGCCTACTAATGAGTTTAGCTTTGGCAAAGACATCTGCTCAGCAGGTTTCACCATGCACTGCATATCTTCACTCTTTTTAAATTTTTCTTCTCTTGGACGAGAATAGTCAGTGTCCTCTTCTTGTTTACTTAGGTTCAATCAATATAAGAATTTAACTATAAAAGAATAGAATATTGTTTATACCCCTAAACATTCCATCCAAATGTTATCTGCACTTAACTTTCGTTTACTCAAAATGTCGGACAATATTTAAGGCCAAAAAAATGTGCAATAAAAATTCACCTTCATGCTGTAATGTCCAAGGCTCAAAATGTTATGGATTTGCAACTTTATATACTTACAATGCTCACTTGAATAAATAAACTCTTGGGACTTTTTAGATGTTGGTTGTCTTTGTCCAGGTAAACATATTGATTCTGTATCCTTTTAAAAAAAAACACGATTCTGTATTTAACTTTTGTGTGTGTATTTATTGTGTTTCCTGGCTAACAATGTCCTAATGCTGTGATGTTCAAGACTTGTAATGTTATTGATCTACATCTTTATATGCTTACAATGCTAACTTGAATAGATATTATATAGCTCTTTTGACTCTTTTACACGTAGGTTGTCAGTTGTCACTGATTTTTTTTGTGTGTGTATTTATTGTGTTTCCAGTGTGAGATACATGAGTTGTTGGCATTGGTATACTACGACAGTCTTCAAAATGTAGTCCCATTTTATGATCAGAGATCTGTTTTGCCCTTAAAGGATGCAGCATGGACGGCGTTCTGTGAGAGCTCAATGAAACATTTTAAGAAAGCCTTCGCACTTAAGTATGTCCTCTTATCTTGTGTCTTATTTTATGCGCTTATCTGGTATTATGACGTTTATGAACGACTTTTGTTCGTTTACAGGGAAGATTGGTTGCATGCATTTTACTTGGGTAAACTTAGCGAAAAGCTTGAATATTCGCATGAAATTGCCTTATCATATTACAATAAAGCTATTGCTTTGAATACATCAGCTGTTGATCCTGTCTATAGGATGCATGCCTCACGCTTGAAACTATTATTTAAGCGCGGAAAACAGAATGCAGAGATTCTGAAGGTTTTGCCTCTTTCTGATCGCATTACTATATTTTAATATTACTTTATTTGCTTGCTTTAATTTTCATGTCTTTGACAGTTGTACTTAAAGATAGACCTATAATTTTATAGTTGACTTGATGATTTGGTGCGCTTGATCTGTATTCTTGATTGTTGTCTGGTTCTCAACAGGTTATTTCAGCCTACGCCTTTGATCAATCTGTAAAAGAAGCTGTCACAAGTATCCTTGGCAGCACAGATAGCTCATCTTTAAATACAAAGGAGACATGTATCAATGCCAATTCTGTGGAAACAAAGCATGAAGGGTTACTAAAATTGGATACTGCATGGTCTATACTTTACAATGATTGCCTTTCTGCGCTTGAAACTTGTGTCGAGGGGGAACTCAAACATTTCCATAAGGCTAGATACATGCTGGCTCAAGGGTTGTATAGAAGGGGTGAGAGTGGTGATATAGAGAGGGCAACAGATCAACTATCTTTCTGTTTCAAATCTTCACGCTCATCATTTACCATAAACATGTGGGAAATTGATAGCATGACAAAAAAAGGAAGGTATATTTTTATTATTAACCTTTCTGTTATCTTTTCACTTGTATTATTATTGGTTTTTTTTTTTTTTAAGCCTTTTGTTAGTTTAAACTTAATGAATTGATATTTTCATCAGAAACAGTTGATTATTGATGGCTCATACAATGGGATATTTCCACAAATACTTTGGTATTTCTAAGTGTCATAACAAATATTTGAAATATACAATCTCGTGGAACACTTTCTTTCAAATGAAAAGAAACCTTTCCCAATTTGTTTTATATAACTTGAGGACTTACCACTCAATAAATAACATTTGATGGATTTATCTGTGTTGTGCAAGAGTTAGGAAACAGCGATGTTGCCAATTCCTAAACTAATTTCTACTTTGCATTTAATGATATCAGGCGCAAGACACCGGGTTCTGCTGGGAATAAGAAAGGCCTTGAGGTTAACTTACCAGAAAGTTCTCGAAAATTCATTACTTGCATCCGAAAGTATGTGCTGTTTTATCTCAAACTATTGGAGGAGACAGGAGATAGATGTATTCTTGAACGTGCATATGTTTCTCTCCGGGGAGATAAGCGGGTAAATCCCTAAATCCTTATTTAGAAATTATAATTCATATAACAATTACGGTTGTTGCTTAGTTATGCTTCATTTATTCTCGTGGAACTGGAAGCACTCTTCATAATAATTTTTTCTTTTCACTTGATGCTTCATTTTCTGATTTTGACTTTATTTCCTGTTAGATAATAAGGTGAAAATATGTCTTTATAGATATGGATTTTCAGTTTATGCAGGCTTAAGGTAGGAACCCACCTTGTTCATATCGAAATCTGATAGTAAATTGAAGGATTTCTATCATCTTTATCTAAACTTGAAGTAAAACTCTTGCCTGTATATTTTATTATAAAATCAATCTGATCTTGCACCGATGATCATATCCTCGCCTGTTTCTGCAACTTTTTCCCTTTGTCTCAGCTAAAAAATTATTTTATATCAAATCCAAACATAATCTGGTTGGTTTTGCCTCTAGAGTATATTTGGAAGTTTCTATCGCTCCTTCATGAAACTATGCAATCCAATCCAACAGATACCGTTCCTCCTAGTTCTTAAACAATAATAAAACGAACCTCATTAATTATTTGCTGCTTCTTCCCCTAGGCACCTCAAAGGTGTTTCTTAAGCAGCCTTTGAAGGTTTTCTTTTTGGGCTAATTCTATGGTGACCAAGTAAAATAGTGTTGTACTCTGCACAAGTTTTTCCGCCATTGGATCCATAAGTCTCGTCATATCTCGCCTGATCCAATGGTGGAAACAAACTCGTGCATGGTGCTACACATATCTCACTGTGTACTACAGAACTAGGCACTATCCTTCTATTTGTCCCTTTTCCCCTCCCTTTTTATTTCAGTATTTGCATTCATGACCACAACCCCTTTCCTCACCCCCATAGTACTACAGAACTAGGCACTATCCTTCTATTTGTCCCTTTTCCCCTCCCTTTTTATTTCAGTATTTGCATTCATGACCACGACCCCTTTCCTCACCCCCATAGATGCGTAAAACATTCCAATATTGTCTAACGCCGGTAATATTATGCATTAGTCACTCAACTAAAACCCACATAATTTCTTGTTATATTTGTACACCCTTTCATCAGATTTGAAAGTAAACCTGATCTGTATTGTCTCTCTTTTACTTGCAGTTTTCATTATGCATTGAAGATCTTGTACCAGTGGCTATCGGAAAGTATTTAAAAGCTATGATTACAACCATGCGCCATTCTCAGACTACTGCTTCTGTTCCAGTGAGTAGTTCTGACAATGTGTTGGAGAGAATGTTTGCTTTATTTATGGAGCAAGGAAGCTTATGGCCAGAAATATGCAGCTTGCCTGAAATTGAGGGCCCTGGTATATCAGAGAGTATCCTGTATGGGTAATACTATTTAATTTAAATTTAAATAAAATAAAATTTTGAACCAATTCTGAGTCCACAAACTTTTGTAGCTTCTCTGGTTGAAATATTAATGTCTTTGCTGCCAGTTTTGTCCTAATTCAGATCCTCAAATAATTGCAGGTATCTGCATGACCATATAGCATTGTTGGAGATAAATGGAAAATTGGAAACTCTTGAAACAATTAATGAGAAGATTCGAAAACGTTTTAAGAATCCTAAACTCTCAAATAGTAGCTGTGCAAAAGTTTGTAAGCATGCTTCTGTTGCTTTGTGTCGATCTCTTATATACAATTTGGCACAAATCACTCCTGTATCAAGTGGATTCTCAAATGGGATTCAGGTCCATGATTTGACTGATGATGGAATGGAATATAGCCAGTTTCTCTGTATTGATTTGCAGCCACGTGAAATATGGAATACAGCTTTTGAAGATTCATCTCTTTTAGAAAATATCAAAACAAAATGGAGTGCCATTTTATCAAAAATAAAGGATATGCTGATAAAGAAAGCTTCTGATGAAAATTTGGAAATAGCAAACACTTTGCTTAGAGCTTGCTATAATTTTTACCGGGAGAGTTCTTCTGTGGTGCTTACCTCTGGCCTCAACTTTTATGTAATTCCATCTCAATTAGTAACAGAGACACCGTTCGATCCAACTATGTCCGGAGTTGAAACCCTTGATCTGAGCATCCCAAGGAAGCTTCTCTTGTGGGCCTATGTGCTAGTGCATGGACGTTATACAAATATATCAATTGTTGTGAAGCATTGTGAAGAAATTTCGAAGGTATGCTAAGTTCTGTGTAAGATCATCTATTAGCAAAAAACCTAGATGGGTTTTGTTACAGATGTTAGTCATTCATCATTCATGTGTCTTCACCTAAGCTTTTAGATACTTGCTTTATGACAATGTTTGAGAAAGGTGCTCGACATACAAATCTTTCATGATTGACAATATTTTATAGATTTTCACTTCTAGGGGCTGTTAGTATGGAGTACAAATCCACATGAAAATTTAAGTTGCGGGAGTTATGTAGTTATTGACACTGTAAAATTCTACAACTTTTATTGTCAATTGTACTTCAGCTGAAGATTATGCTCTATAAATAATCCTTCATCATGTTTACTCAATCATGCATGATTCTGAAGTAATCGGTTCATGACCATGAATCCTTATATTTGTTTCTGTGGTGCAGTCAAAGATGAAAAGAGGGAGTGGAATGTCACCTGCGCTTACAAACTCGCCTGCTACGGCCCCAACTCTTCATGGTAATTTTCCATCCTCAATAAAAAACAATAATAGGTTTGGACTATGCAAGTCTTTATAAGAAAAGGCTTAACAACTACAATTCCTGTTTGTTGTAGGTAGCAGTAGAAGTGGACCAAATGACATTGATTCTACCCATGTCACAACAGTAGGGAGTGGTTTACTTTGCACCGATGACATTCAGAAGAATCTATTTGGTTCTCCCCAGTTGCATCAATGTACAACTAACGATGCTGAGAGGAGCAATGTGAACGCACGTGAAGTAGAGACACGAGATTGA

Protein sequence

>MS.gene23918.t1

MEDSKSDTLDIRWIGPELMKLPLSKRMFPKEYLKAFHVAKFRIKTPGDYQTKEQCADVFKYVLPYAKESSSLRAIRKHFLQPPEDLLTGNPIDNFLDDPNLCEDKLSEEAGSEGFLETITKTMFPDVGGLGQYNTTLLKSATDKWPGFVLTKEGEEFVEQNAKLFKYDLMYNPLRFESWQRLGNIYDEEVDLLLNDGSKHINVVGWRKNPTLSERVETSRRRSRRCLLMSLALAKTSAQQCEIHELLALVYYDSLQNVVPFYDQRSVLPLKDAAWTAFCESSMKHFKKAFALKEDWLHAFYLGKLSEKLEYSHEIALSYYNKAIALNTSAVDPVYRMHASRLKLLFKRGKQNAEILKVISAYAFDQSVKEAVTSILGSTDSSSLNTKETCINANSVETKHEGLLKLDTAWSILYNDCLSALETCVEGELKHFHKARYMLAQGLYRRGESGDIERATDQLSFCFKSSRSSFTINMWEIDSMTKKGRRKTPGSAGNKKGLEVNLPESSRKFITCIRKYVLFYLKLLEETGDRCILERAYVSLRGDKRFSLCIEDLVPVAIGKYLKAMITTMRHSQTTASVPVSSSDNVLERMFALFMEQGSLWPEICSLPEIEGPGISESILYGYLHDHIALLEINGKLETLETINEKIRKRFKNPKLSNSSCAKVCKHASVALCRSLIYNLAQITPVSSGFSNGIQVHDLTDDGMEYSQFLCIDLQPREIWNTAFEDSSLLENIKTKWSAILSKIKDMLIKKASDENLEIANTLLRACYNFYRESSSVVLTSGLNFYVIPSQLVTETPFDPTMSGVETLDLSIPRKLLLWAYVLVHGRYTNISIVVKHCEEISKSKMKRGSGMSPALTNSPATAPTLHGSSRSGPNDIDSTHVTTVGSGLLCTDDIQKNLFGSPQLHQCTTNDAERSNVNAREVETRD