AlfalfaGEDB | MS.gene26288

M. sativa cultivar XinJiangDaYe / MS.gene26288

KEGG: K20185
GO: GO:0005575 GO:0031082 GO:0031083 GO:0032991
PFAM: PF06320.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26288.t1	XP_003615993.2	93.4	106	7	0	1	106	1	106	6.10E-46	193.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26288.t1	O22929	55.2	96	43	0	11	106	26	121	4.0e-22	105.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26288.t1	G7KFM0	93.4	106	7	0	1	106	1	106	4.4e-46	193.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049378	MS.gene26288	0.831731	1.41E-55	-1.69E-46
MS.gene049382	MS.gene26288	0.822502	2.29E-53	-1.69E-46
MS.gene049756	MS.gene26288	0.850214	1.96E-60	-1.69E-46
MS.gene050226	MS.gene26288	0.817125	3.88E-52	-1.69E-46
MS.gene050227	MS.gene26288	0.808866	2.51E-50	-1.69E-46
MS.gene050228	MS.gene26288	0.813876	2.05E-51	-1.69E-46
MS.gene050237	MS.gene26288	0.801289	9.66E-49	-1.69E-46
MS.gene050303	MS.gene26288	0.803856	2.85E-49	-1.69E-46
MS.gene050623	MS.gene26288	-0.815842	7.51E-52	-1.69E-46
MS.gene050629	MS.gene26288	-0.816352	5.78E-52	-1.69E-46

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26288.t1	MTR_5g074880	90.826	109	10	0	1	109	1	109	3.53e-68	201

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26288.t1	AT2G30330	55.294	85	38	0	22	106	37	121	8.20e-28	99.8
MS.gene26288.t1	AT2G30330	55.294	85	38	0	22	106	37	121	1.49e-27	99.0

Showing 1 to 2 of 2 entries

Previous1Next

Find 15 sgRNAs with CRISPR-Local

Find 23 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACACGCGCAGAATCAAA+GGG	0.580106	5.4:+59405996	MS.gene26288:CDS
AAGAAAAGCAGAACGCGTTT+CGG	0.387718	5.4:+59406112	MS.gene26288:CDS
ACGCGCAGAATCAAAGGGAT+TGG	0.518596	5.4:+59406001	MS.gene26288:CDS
ACGTCCAGTTGTAGACGCGA+AGG	0.599148	5.4:-59406725	None:intergenic
CGCGTCTACAACTGGACGTT+TGG	0.267025	5.4:+59406729	MS.gene26288:CDS
CGTCCAGTTGTAGACGCGAA+GGG	0.609212	5.4:-59406724	None:intergenic
CTGTTAGTAGAAGCAGTGAA+TGG	0.564549	5.4:+59406137	MS.gene26288:CDS
GCGTCTACAACTGGACGTTT+GGG	0.446986	5.4:+59406730	MS.gene26288:CDS
TAACACACGCGCAGAATCAA+AGG	0.527349	5.4:+59405995	MS.gene26288:CDS
TAGCCCTTCGCGTCTACAAC+TGG	0.355789	5.4:+59406721	MS.gene26288:intron

Showing 1 to 10 of 15 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTGATTGAATTTGTAGTGTT+TGG	+	chr5.4:59406451-59406470	MS.gene26288:intron	30.0%
TTCGAGATTTGTGAAACAAA+CGG	+	chr5.4:59406229-59406248	MS.gene26288:CDS	30.0%
AGCTCATTTGAAAGTCTGTT+TGG	-	chr5.4:59406661-59406680	None:intergenic	35.0%
AAGAAAAGCAGAACGCGTTT+CGG	+	chr5.4:59406112-59406131	MS.gene26288:CDS	40.0%
ACTTCATCACGAGCTTATAG+CGG	-	chr5.4:59406563-59406582	None:intergenic	40.0%
CTGTTAGTAGAAGCAGTGAA+TGG	+	chr5.4:59406137-59406156	MS.gene26288:CDS	40.0%
TTAGTAGAAGCAGTGAATGG+CGG	+	chr5.4:59406140-59406159	MS.gene26288:CDS	40.0%
TTCTCTTAACACTGCTCTCA+AGG	+	chr5.4:59406274-59406293	MS.gene26288:CDS	40.0%
TTGTGAAACAAACGGATCAG+TGG	+	chr5.4:59406237-59406256	MS.gene26288:CDS	40.0%
AACACACGCGCAGAATCAAA+GGG	+	chr5.4:59405996-59406015	MS.gene26288:CDS	45.0%

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	59405978	59406759	59405978	ID=MS.gene26288
chr5.4	mRNA	59405978	59406759	59405978	ID=MS.gene26288.t1;Parent=MS.gene26288
chr5.4	exon	59405978	59406295	59405978	ID=MS.gene26288.t1.exon1;Parent=MS.gene26288.t1
chr5.4	CDS	59405978	59406295	59405978	ID=cds.MS.gene26288.t1;Parent=MS.gene26288.t1
chr5.4	exon	59406724	59406759	59406724	ID=MS.gene26288.t1.exon2;Parent=MS.gene26288.t1
chr5.4	CDS	59406724	59406759	59406724	ID=cds.MS.gene26288.t1;Parent=MS.gene26288.t1

Gene Sequence

>MS.gene26288

ATGGAAGAACGCGATGTTAACACACGCGCAGAATCAAAGGGATTGGAAGATTCATTACAAAACCTAATTCACATTCATCATCACAAATCTCTCATTCTCACCAATCAAACCGAAAAAGCGAAGAAAGATGCAATAAGAAAAGCAGAACGCGTTTCGGATCTGTTAGTAGAAGCAGTGAATGGCGGTGTTCAAGATTCGTTTATTTATCAGAAGAGAATTGAGCTTGAAATTCGTGCTCTTGCTGTAACTATTTCGAGATTTGTGAAACAAACGGATCAGTGGCTTAATGCTACTCATTCTCTTAACACTGCTCTCAAGGTAACAAATTGCTTTCATTTTTTGTGTATTCTTTAATTTTGTGTTTTCTTCATTATTGTGTTCAAATCTCTGCTTTGTGAAAAATAGCGAATAATTGATAAGTTAGCTTATAGCGGATGAACTTATAGAGGAGAGTTGATTAGCAAATAAGCTAGCTGATTGAATTTGTAGTGTTTGGTAAAATTAACTGTTCAACTTTCTAAAGATTCAATTTTTAGTTAATAATGATAAGGTACAAGCTGCTTGAATTAGCTTTATCAAAAACCGCTATAAGCTCGTGATGAAGTGACGATTACAAAACATGTCTGTTTTAGTTTAATGAGCTTATTAGACATAAGCTATAAGCTCAAAAACATGTCTTACCAAACAGACTTTCAAATGAGCTACTTGTTAAGTGACAAATGACTTTCAAGTTTCAACATACATAGCCCTTCGCGTCTACAACTGGACGTTTGGGAGCGTGA

Protein sequence

>MS.gene26288.t1

MEERDVNTRAESKGLEDSLQNLIHIHHHKSLILTNQTEKAKKDAIRKAERVSDLLVEAVNGGVQDSFIYQKRIELEIRALAVTISRFVKQTDQWLNATHSLNTALKPFASTTGRLGA