AlfalfaGEDB | MS.gene28929

M. sativa cultivar XinJiangDaYe / MS.gene28929

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28929.t1	XP_003607297.1	98.5	68	1	0	1	68	1	68	9.10E-26	125.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28929.t1	G7JPM7	98.5	68	1	0	1	68	1	68	6.5e-26	125.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene28929	0.831073	2.05E-55	-1.69E-46
MS.gene049346	MS.gene28929	0.830458	2.90E-55	-1.69E-46
MS.gene049758	MS.gene28929	0.834673	2.62E-56	-1.69E-46
MS.gene049910	MS.gene28929	0.804915	1.72E-49	-1.69E-46
MS.gene049915	MS.gene28929	0.835725	1.42E-56	-1.69E-46
MS.gene050226	MS.gene28929	0.81458	1.43E-51	-1.69E-46
MS.gene050227	MS.gene28929	0.826461	2.68E-54	-1.69E-46
MS.gene050228	MS.gene28929	0.831436	1.67E-55	-1.69E-46
MS.gene050303	MS.gene28929	0.809366	1.96E-50	-1.69E-46
MS.gene050330	MS.gene28929	-0.82541	4.76E-54	-1.69E-46
MS.gene050438	MS.gene28929	0.802554	5.31E-49	-1.69E-46
MS.gene050558	MS.gene28929	0.803712	3.06E-49	-1.69E-46
MS.gene050586	MS.gene28929	0.813302	2.74E-51	-1.69E-46
MS.gene050642	MS.gene28929	0.805101	1.57E-49	-1.69E-46
MS.gene050820	MS.gene28929	0.80017	1.63E-48	-1.69E-46
MS.gene05119	MS.gene28929	-0.807097	5.97E-50	-1.69E-46
MS.gene051626	MS.gene28929	0.80287	4.57E-49	-1.69E-46
MS.gene051633	MS.gene28929	0.808824	2.56E-50	-1.69E-46
MS.gene051662	MS.gene28929	0.820634	6.18E-53	-1.69E-46
MS.gene051663	MS.gene28929	0.824136	9.50E-54	-1.69E-46
MS.gene051789	MS.gene28929	0.810842	9.43E-51	-1.69E-46
MS.gene052176	MS.gene28929	0.847326	1.24E-59	-1.69E-46
MS.gene052256	MS.gene28929	0.821546	3.81E-53	-1.69E-46
MS.gene052302	MS.gene28929	0.894487	2.36E-75	-1.69E-46
MS.gene052376	MS.gene28929	0.902788	6.78E-79	-1.69E-46
MS.gene052600	MS.gene28929	0.807354	5.26E-50	-1.69E-46
MS.gene052856	MS.gene28929	0.814239	1.70E-51	-1.69E-46
MS.gene052858	MS.gene28929	0.805514	1.29E-49	-1.69E-46
MS.gene052860	MS.gene28929	0.802481	5.50E-49	-1.69E-46
MS.gene053074	MS.gene28929	0.802354	5.84E-49	-1.69E-46
MS.gene053437	MS.gene28929	0.801428	9.05E-49	-1.69E-46
MS.gene053630	MS.gene28929	0.817526	3.15E-52	-1.69E-46
MS.gene053836	MS.gene28929	0.858709	6.84E-63	-1.69E-46
MS.gene054185	MS.gene28929	0.806633	7.48E-50	-1.69E-46
MS.gene054473	MS.gene28929	0.818627	1.78E-52	-1.69E-46
MS.gene054542	MS.gene28929	0.801318	9.53E-49	-1.69E-46
MS.gene054667	MS.gene28929	0.879187	1.53E-69	-1.69E-46
MS.gene054930	MS.gene28929	0.821114	4.80E-53	-1.69E-46
MS.gene054942	MS.gene28929	0.831606	1.52E-55	-1.69E-46
MS.gene054983	MS.gene28929	0.825318	5.00E-54	-1.69E-46
MS.gene056069	MS.gene28929	-0.842485	2.51E-58	-1.69E-46
MS.gene056631	MS.gene28929	0.805737	1.16E-49	-1.69E-46
MS.gene056875	MS.gene28929	0.808637	2.81E-50	-1.69E-46
MS.gene057121	MS.gene28929	0.800804	1.21E-48	-1.69E-46
MS.gene057260	MS.gene28929	0.837747	4.33E-57	-1.69E-46
MS.gene057439	MS.gene28929	0.813136	2.98E-51	-1.69E-46
MS.gene057754	MS.gene28929	0.836899	7.14E-57	-1.69E-46
MS.gene058168	MS.gene28929	0.822679	2.08E-53	-1.69E-46
MS.gene058182	MS.gene28929	0.845801	3.24E-59	-1.69E-46
MS.gene058201	MS.gene28929	0.801122	1.04E-48	-1.69E-46
MS.gene058749	MS.gene28929	0.83331	5.74E-56	-1.69E-46
MS.gene058906	MS.gene28929	0.844303	8.22E-59	-1.69E-46
MS.gene059033	MS.gene28929	-0.802885	4.54E-49	-1.69E-46
MS.gene059124	MS.gene28929	0.826789	2.24E-54	-1.69E-46
MS.gene05984	MS.gene28929	0.803123	4.05E-49	-1.69E-46
MS.gene06001	MS.gene28929	0.826889	2.12E-54	-1.69E-46
MS.gene060165	MS.gene28929	0.808576	2.89E-50	-1.69E-46
MS.gene060404	MS.gene28929	0.816225	6.17E-52	-1.69E-46
MS.gene060476	MS.gene28929	0.879475	1.21E-69	-1.69E-46
MS.gene060619	MS.gene28929	0.825469	4.61E-54	-1.69E-46
MS.gene061049	MS.gene28929	0.810839	9.44E-51	-1.69E-46
MS.gene061113	MS.gene28929	0.800556	1.36E-48	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28929.t1	MTR_4g076090	98.529	68	1	0	1	68	1	68	4.30e-45	138

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28929.t1	AT3G22210	60.938	64	24	1	5	68	6	68	4.17e-20	75.9

Find 15 sgRNAs with CRISPR-Local

Find 16 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAATTCGCTCTTCCAGTTT+TGG	0.231911	4.4:-34385179	MS.gene28929:CDS
GTCTTCTAGCTCGCCTTTCT+CGG	0.289922	4.4:+34384949	None:intergenic
AGCTCGCCTTTCTCGGGAGC+TGG	0.345325	4.4:+34384956	None:intergenic
GACAGAAATCACTTCAAGAT+TGG	0.349085	4.4:-34385019	MS.gene28929:intron
GCTGCAACAATGCCCAAAAC+TGG	0.365881	4.4:+34385166	None:intergenic
TCTTCTAGCTCGCCTTTCTC+GGG	0.457167	4.4:+34384950	None:intergenic
CTTTCTCGGGAGCTGGATGT+TGG	0.468532	4.4:+34384963	None:intergenic
ATGATTCTGAATCAGACAAT+GGG	0.472193	4.4:-34384995	MS.gene28929:CDS
ACAGAAATCACTTCAAGATT+GGG	0.482353	4.4:-34385018	MS.gene28929:intron
ATTGAAACTCACTGCATAGA+AGG	0.485260	4.4:+34385132	None:intergenic
CAACATCCAGCTCCCGAGAA+AGG	0.508532	4.4:-34384962	MS.gene28929:CDS
GATGATTCTGAATCAGACAA+TGG	0.593424	4.4:-34384996	MS.gene28929:CDS
GAGTTTCAATGAGATTAGAG+AGG	0.641117	4.4:-34385119	MS.gene28929:intron
TGATTCTGAATCAGACAATG+GGG	0.677451	4.4:-34384994	MS.gene28929:CDS
GATTCTGAATCAGACAATGG+GGG	0.690393	4.4:-34384993	MS.gene28929:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ACAGAAATCACTTCAAGATT+GGG	-	chr4.4:34385095-34385114	MS.gene28929:intron	30.0%
	ATGATTCTGAATCAGACAAT+GGG	-	chr4.4:34385118-34385137	MS.gene28929:intron	30.0%
	ATTGAAACTCACTGCATAGA+AGG	+	chr4.4:34384984-34385003	None:intergenic	35.0%
	GACAGAAATCACTTCAAGAT+TGG	-	chr4.4:34385094-34385113	MS.gene28929:intron	35.0%
	GAGTTTCAATGAGATTAGAG+AGG	-	chr4.4:34384994-34385013	MS.gene28929:CDS	35.0%
	GATGATTCTGAATCAGACAA+TGG	-	chr4.4:34385117-34385136	MS.gene28929:intron	35.0%
	TGATTCTGAATCAGACAATG+GGG	-	chr4.4:34385119-34385138	MS.gene28929:intron	35.0%
	GATTCTGAATCAGACAATGG+GGG	-	chr4.4:34385120-34385139	MS.gene28929:CDS	40.0%
!	CAATTCGCTCTTCCAGTTTT+GGG	-	chr4.4:34384935-34384954	MS.gene28929:CDS	40.0%
!	GCAATTCGCTCTTCCAGTTT+TGG	-	chr4.4:34384934-34384953	MS.gene28929:CDS	45.0%
	GCTGCAACAATGCCCAAAAC+TGG	+	chr4.4:34384950-34384969	None:intergenic	50.0%
!!	GTCTTCTAGCTCGCCTTTCT+CGG	+	chr4.4:34385167-34385186	None:intergenic	50.0%
!!	TCTTCTAGCTCGCCTTTCTC+GGG	+	chr4.4:34385166-34385185	None:intergenic	50.0%
	CAACATCCAGCTCCCGAGAA+AGG	-	chr4.4:34385151-34385170	MS.gene28929:CDS	55.0%
	CTTTCTCGGGAGCTGGATGT+TGG	+	chr4.4:34385153-34385172	None:intergenic	55.0%
	AGCTCGCCTTTCTCGGGAGC+TGG	+	chr4.4:34385160-34385179	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	34384923	34385212	34384923	ID=MS.gene28929
chr4.4	mRNA	34384923	34385212	34384923	ID=MS.gene28929.t1;Parent=MS.gene28929
chr4.4	exon	34385120	34385212	34385120	ID=MS.gene28929.t1.exon1;Parent=MS.gene28929.t1
chr4.4	CDS	34385120	34385212	34385120	ID=cds.MS.gene28929.t1;Parent=MS.gene28929.t1
chr4.4	exon	34384923	34385036	34384923	ID=MS.gene28929.t1.exon2;Parent=MS.gene28929.t1
chr4.4	CDS	34384923	34385036	34384923	ID=cds.MS.gene28929.t1;Parent=MS.gene28929.t1

Gene Sequence	>MS.gene28929 ATGGATGCAATGCAATTCGCTCTTCCAGTTTTGGGCATTGTTGCAGCTGCAGCTGTGACCTTCTATGCAGTGAGTTTCAATGAGATTAGAGAGGTAAGTCACTAAGCAGCATCATCAACTATGTAATATATATTACATGATATCTTTATCAATCTTATAAAATTGAATTATGACAGAAATCACTTCAAGATTGGGATGATTCTGAATCAGACAATGGGGGTTTTAGACCAACATCCAGCTCCCGAGAAAGGCGAGCTAGAAGACAAGCTAGTAAAAATACCAAAAAATAA
Protein sequence	>MS.gene28929.t1 MDAMQFALPVLGIVAAAAVTFYAVSFNEIREKSLQDWDDSESDNGGFRPTSSSRERRARRQASKNTKK