Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33405.t1 | XP_013454766.1 | 97.9 | 146 | 2 | 1 | 1 | 145 | 1 | 146 | 5.20E-71 | 276.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33405.t1 | Q9M812 | 60.9 | 156 | 50 | 1 | 1 | 145 | 1 | 156 | 8.7e-43 | 174.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33405.t1 | A0A072UGI4 | 97.9 | 146 | 2 | 1 | 1 | 145 | 1 | 146 | 3.7e-71 | 276.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene33405 | 0.820494 | 6.66E-53 | -1.69E-46 |
| MS.gene049173 | MS.gene33405 | 0.841117 | 5.77E-58 | -1.69E-46 |
| MS.gene049217 | MS.gene33405 | 0.809618 | 1.73E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene33405 | 0.808536 | 2.95E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene33405 | 0.814782 | 1.29E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene33405 | 0.803709 | 3.06E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene33405 | 0.803951 | 2.73E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene33405 | 0.83763 | 4.64E-57 | -1.69E-46 |
| MS.gene049805 | MS.gene33405 | 0.814356 | 1.61E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene33405 | 0.80261 | 5.17E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene33405 | 0.844665 | 6.57E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene33405 | 0.815524 | 8.85E-52 | -1.69E-46 |
| MS.gene051551 | MS.gene33405 | 0.801641 | 8.18E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene33405 | 0.816632 | 5.00E-52 | -1.69E-46 |
| MS.gene051692 | MS.gene33405 | 0.850977 | 1.20E-60 | -1.69E-46 |
| MS.gene051810 | MS.gene33405 | 0.813381 | 2.63E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene33405 | 0.84435 | 7.98E-59 | -1.69E-46 |
| MS.gene052271 | MS.gene33405 | 0.820168 | 7.91E-53 | -1.69E-46 |
| MS.gene052322 | MS.gene33405 | 0.818268 | 2.14E-52 | -1.69E-46 |
| MS.gene052484 | MS.gene33405 | 0.81727 | 3.60E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene33405 | 0.810578 | 1.07E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene33405 | 0.815229 | 1.03E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene33405 | 0.844239 | 8.55E-59 | -1.69E-46 |
| MS.gene053103 | MS.gene33405 | 0.810244 | 1.27E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene33405 | 0.838613 | 2.59E-57 | -1.69E-46 |
| MS.gene053209 | MS.gene33405 | 0.826788 | 2.24E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene33405 | 0.816197 | 6.26E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene33405 | 0.81103 | 8.58E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene33405 | 0.843225 | 1.60E-58 | -1.69E-46 |
| MS.gene053574 | MS.gene33405 | 0.806127 | 9.56E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene33405 | 0.832364 | 9.86E-56 | -1.69E-46 |
| MS.gene053813 | MS.gene33405 | 0.808075 | 3.70E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene33405 | 0.817747 | 2.81E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene33405 | 0.810421 | 1.16E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene33405 | 0.814872 | 1.23E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene33405 | 0.857111 | 2.04E-62 | -1.69E-46 |
| MS.gene054642 | MS.gene33405 | 0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene33405 | 0.824837 | 6.50E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene33405 | 0.811817 | 5.79E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene33405 | 0.819014 | 1.45E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene33405 | 0.825797 | 3.85E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene33405 | 0.807761 | 4.32E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene33405 | 0.880407 | 5.63E-70 | -1.69E-46 |
| MS.gene05592 | MS.gene33405 | 0.820599 | 6.30E-53 | -1.69E-46 |
| MS.gene055941 | MS.gene33405 | 0.830553 | 2.75E-55 | -1.69E-46 |
| MS.gene056374 | MS.gene33405 | 0.831811 | 1.35E-55 | -1.69E-46 |
| MS.gene05664 | MS.gene33405 | 0.816979 | 4.18E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene33405 | 0.822568 | 2.21E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene33405 | 0.832456 | 9.36E-56 | -1.69E-46 |
| MS.gene057416 | MS.gene33405 | 0.827814 | 1.27E-54 | -1.69E-46 |
| MS.gene057734 | MS.gene33405 | 0.822706 | 2.05E-53 | -1.69E-46 |
| MS.gene057926 | MS.gene33405 | 0.805972 | 1.03E-49 | -1.69E-46 |
| MS.gene058006 | MS.gene33405 | 0.827245 | 1.74E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene33405 | 0.808983 | 2.37E-50 | -1.69E-46 |
| MS.gene058723 | MS.gene33405 | 0.820988 | 5.13E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene33405 | 0.83155 | 1.57E-55 | -1.69E-46 |
| MS.gene058838 | MS.gene33405 | 0.80465 | 1.95E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene33405 | 0.825608 | 4.27E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene33405 | 0.807448 | 5.03E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene33405 | 0.814916 | 1.21E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene33405 | 0.830425 | 2.96E-55 | -1.69E-46 |
| MS.gene059902 | MS.gene33405 | 0.83504 | 2.11E-56 | -1.69E-46 |
| MS.gene060356 | MS.gene33405 | 0.817425 | 3.32E-52 | -1.69E-46 |
| MS.gene060482 | MS.gene33405 | 0.820184 | 7.84E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene33405 | 0.80459 | 2.01E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene33405 | 0.806426 | 8.27E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene33405 | 0.845308 | 4.40E-59 | -1.69E-46 |
| MS.gene061150 | MS.gene33405 | 0.810137 | 1.34E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene33405 | 0.812129 | 4.95E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33405.t1 | MTR_4g013200 | 97.945 | 146 | 2 | 1 | 1 | 145 | 1 | 146 | 2.77e-98 | 279 |
| MS.gene33405.t1 | MTR_7g118290 | 35.664 | 143 | 84 | 1 | 10 | 144 | 35 | 177 | 2.32e-26 | 98.2 |
| MS.gene33405.t1 | MTR_8g024180 | 42.276 | 123 | 68 | 2 | 25 | 144 | 46 | 168 | 4.56e-26 | 97.1 |
| MS.gene33405.t1 | MTR_5g032440 | 45.333 | 75 | 41 | 0 | 71 | 145 | 108 | 182 | 8.52e-18 | 75.9 |
| MS.gene33405.t1 | MTR_7g116795 | 31.783 | 129 | 72 | 1 | 32 | 144 | 31 | 159 | 7.73e-16 | 70.5 |
| MS.gene33405.t1 | MTR_7g118290 | 27.273 | 143 | 75 | 2 | 10 | 144 | 35 | 156 | 5.21e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33405.t1 | AT1G52220 | 60.897 | 156 | 50 | 1 | 1 | 145 | 1 | 156 | 8.74e-59 | 179 |
| MS.gene33405.t1 | AT1G52220 | 60.256 | 156 | 50 | 2 | 1 | 145 | 1 | 155 | 2.35e-56 | 173 |
| MS.gene33405.t1 | AT1G52220 | 52.448 | 143 | 51 | 3 | 1 | 126 | 1 | 143 | 7.19e-39 | 129 |
| MS.gene33405.t1 | AT1G52220 | 46.154 | 156 | 44 | 2 | 1 | 145 | 1 | 127 | 6.43e-34 | 115 |
| MS.gene33405.t1 | AT2G46820 | 49.425 | 87 | 44 | 0 | 58 | 144 | 86 | 172 | 1.92e-27 | 100 |
| MS.gene33405.t1 | AT2G46820 | 49.425 | 87 | 44 | 0 | 58 | 144 | 86 | 172 | 1.92e-27 | 100 |
| MS.gene33405.t1 | AT4G01150 | 31.469 | 143 | 93 | 2 | 2 | 144 | 25 | 162 | 1.04e-16 | 72.8 |
| MS.gene33405.t1 | AT4G38100 | 37.143 | 70 | 42 | 1 | 75 | 144 | 122 | 189 | 6.09e-12 | 60.8 |
| MS.gene33405.t1 | AT4G38100 | 37.143 | 70 | 42 | 1 | 75 | 144 | 82 | 149 | 6.50e-12 | 60.1 |
Find 35 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAGAAACAGAGAAATTT+TGG | 0.146035 | 4.2:+87431395 | None:intergenic |
| CCATTTGTTGTGAAGGCTTC+TGG | 0.198643 | 4.2:-87430531 | MS.gene33405:CDS |
| CCACCACCATTGTTGCTTCA+TGG | 0.266188 | 4.2:-87431442 | MS.gene33405:CDS |
| TTGCAGCTGTAGTAGCGCTT+TGG | 0.279539 | 4.2:-87430301 | MS.gene33405:CDS |
| TTCTCTGTTTCTCTTCTTCC+AGG | 0.283501 | 4.2:-87431388 | MS.gene33405:intron |
| CAAATCAACTTCAGATATCT+TGG | 0.295889 | 4.2:-87428522 | MS.gene33405:CDS |
| GAGGACCGGTTAGGACTATT+TGG | 0.304471 | 4.2:-87430332 | MS.gene33405:CDS |
| TGCAGCTGTAGTAGCGCTTT+GGG | 0.308730 | 4.2:-87430300 | MS.gene33405:CDS |
| CATGGCAGAAACTCATTTCC+AGG | 0.325382 | 4.2:-87431424 | MS.gene33405:CDS |
| CGGTTAGGACTATTTGGTTT+GGG | 0.326107 | 4.2:-87430326 | MS.gene33405:CDS |
| AAGTTGATTTGTTCAAGATT+TGG | 0.346842 | 4.2:+87428534 | None:intergenic |
| CCGATTTCGTTGGAACTCAT+TGG | 0.355490 | 4.2:-87429724 | MS.gene33405:CDS |
| CCGGTTAGGACTATTTGGTT+TGG | 0.357509 | 4.2:-87430327 | MS.gene33405:CDS |
| TCCAACGAAATCGGGATAAC+TGG | 0.360832 | 4.2:+87429733 | None:intergenic |
| CCAATGAGTTCCAACGAAAT+CGG | 0.370316 | 4.2:+87429724 | None:intergenic |
| TGGTGGCAAGCTTGCAATAA+TGG | 0.403458 | 4.2:+87431459 | None:intergenic |
| CCAGAAGCCTTCACAACAAA+TGG | 0.404317 | 4.2:+87430531 | None:intergenic |
| GATATAAATGCTTACCGGTC+AGG | 0.421505 | 4.2:+87429323 | None:intergenic |
| CAATGAGTTCCAACGAAATC+GGG | 0.452781 | 4.2:+87429725 | None:intergenic |
| ATCTCTTATTCAAGCCTGAC+CGG | 0.490702 | 4.2:-87429337 | MS.gene33405:intron |
| AATAGTCCTAACCGGTCCTC+AGG | 0.492618 | 4.2:+87430335 | None:intergenic |
| AAATCAACTTCAGATATCTT+GGG | 0.494856 | 4.2:-87428521 | MS.gene33405:CDS |
| GCCAGTTATCCCGATTTCGT+TGG | 0.513391 | 4.2:-87429734 | MS.gene33405:CDS |
| TAACGTTCCATTTGTTGTGA+AGG | 0.519833 | 4.2:-87430538 | MS.gene33405:CDS |
| CCAAACCAAATAGTCCTAAC+CGG | 0.525229 | 4.2:+87430327 | None:intergenic |
| GATAAACCTGAGGACCGGTT+AGG | 0.533709 | 4.2:-87430341 | MS.gene33405:CDS |
| GATAACTGGCAATTTGTCAA+TGG | 0.540765 | 4.2:+87429747 | None:intergenic |
| GGCATCAACAAATTTGATAG+CGG | 0.597711 | 4.2:-87430279 | MS.gene33405:intron |
| CTTGAATAAGAGATAGCGAT+AGG | 0.600486 | 4.2:+87429346 | None:intergenic |
| ATGGCAGAAACTCATTTCCA+GGG | 0.613248 | 4.2:-87431423 | MS.gene33405:CDS |
| CCATGAAGCAACAATGGTGG+TGG | 0.629553 | 4.2:+87431442 | None:intergenic |
| AGTGGGATAAACCTGAGGAC+CGG | 0.646928 | 4.2:-87430346 | MS.gene33405:CDS |
| TTTCTGCCATGAAGCAACAA+TGG | 0.695758 | 4.2:+87431436 | None:intergenic |
| TAAACAGTGGGATAAACCTG+AGG | 0.721610 | 4.2:-87430351 | MS.gene33405:intron |
| CTGCCATGAAGCAACAATGG+TGG | 0.743933 | 4.2:+87431439 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATTTTCTTAATTATTAT+CGG | - | chr4.2:87428853-87428872 | MS.gene33405:intron | 10.0% |
| !! | AGAACTGAAAAATATAAATA+AGG | + | chr4.2:87431131-87431150 | None:intergenic | 15.0% |
| !! | GAACTGAAAAATATAAATAA+GGG | + | chr4.2:87431130-87431149 | None:intergenic | 15.0% |
| !!! | AAGTATGACATTTTTTAAAA+CGG | - | chr4.2:87428754-87428773 | MS.gene33405:intron | 15.0% |
| !!! | AAGTATTGAAGAAAAAAATA+TGG | + | chr4.2:87430350-87430369 | None:intergenic | 15.0% |
| !!! | AATAAATAGTTTTTTTGTCA+AGG | - | chr4.2:87430969-87430988 | MS.gene33405:intron | 15.0% |
| !!! | ATAAATAGTTTTTTTGTCAA+GGG | - | chr4.2:87430970-87430989 | MS.gene33405:intron | 15.0% |
| !!! | ATTATAGTTTCTCTAATTTT+TGG | + | chr4.2:87430471-87430490 | None:intergenic | 15.0% |
| !!! | TAAAGACTATTTTTTTTCAT+GGG | + | chr4.2:87430157-87430176 | None:intergenic | 15.0% |
| !!! | TTAAAGACTATTTTTTTTCA+TGG | + | chr4.2:87430158-87430177 | None:intergenic | 15.0% |
| !!! | TTTCTTTTCTTTAATTACTA+TGG | + | chr4.2:87430810-87430829 | None:intergenic | 15.0% |
| !! | AGAAAAAATCAAAATCAGAA+TGG | + | chr4.2:87430194-87430213 | None:intergenic | 20.0% |
| !! | TAAATAAGGGAAAAATATAG+TGG | + | chr4.2:87431117-87431136 | None:intergenic | 20.0% |
| !! | TGCTTGAACTAATTAAAAAT+TGG | - | chr4.2:87428959-87428978 | MS.gene33405:intron | 20.0% |
| !! | TTGAACTAATTAAAAATTGG+CGG | - | chr4.2:87428962-87428981 | MS.gene33405:intron | 20.0% |
| !! | TTGAATATGTTATTGATACA+GGG | - | chr4.2:87431413-87431432 | MS.gene33405:CDS | 20.0% |
| !!! | AGTATGACATTTTTTAAAAC+GGG | - | chr4.2:87428755-87428774 | MS.gene33405:intron | 20.0% |
| !!! | TTTTTTTCATGGGAAAAAAA+AGG | + | chr4.2:87430147-87430166 | None:intergenic | 20.0% |
| ! | AAAGTGATATAAATGCTTAC+CGG | + | chr4.2:87430665-87430684 | None:intergenic | 25.0% |
| ! | AAATCAACTTCAGATATCTT+GGG | - | chr4.2:87431459-87431478 | MS.gene33405:CDS | 25.0% |
| ! | AGAAAAAAGATGAGATAAAG+TGG | + | chr4.2:87429851-87429870 | None:intergenic | 25.0% |
| ! | AGCTAATTACTAACAACTTA+TGG | + | chr4.2:87431293-87431312 | None:intergenic | 25.0% |
| ! | ATAGTTAGTTCAAACACTAA+GGG | + | chr4.2:87429155-87429174 | None:intergenic | 25.0% |
| ! | ATATTTGACCTTGAAATACT+CGG | + | chr4.2:87430040-87430059 | None:intergenic | 25.0% |
| ! | ATCAACTGTACAAAATTTCA+GGG | + | chr4.2:87429219-87429238 | None:intergenic | 25.0% |
| ! | CTTGAATATGTTATTGATAC+AGG | - | chr4.2:87431412-87431431 | MS.gene33405:CDS | 25.0% |
| ! | TATAGTTAGTTCAAACACTA+AGG | + | chr4.2:87429156-87429175 | None:intergenic | 25.0% |
| ! | TGCAAAAACAAAAACAAAGT+CGG | + | chr4.2:87430530-87430549 | None:intergenic | 25.0% |
| ! | TTCTTTAATTACTATGGCTA+TGG | + | chr4.2:87430804-87430823 | None:intergenic | 25.0% |
| ! | TTTGTTGATGTTTAAACAGT+GGG | - | chr4.2:87429617-87429636 | MS.gene33405:intron | 25.0% |
| !! | AATTTCTTTTTCTGTTTCAG+TGG | - | chr4.2:87430607-87430626 | MS.gene33405:intron | 25.0% |
| !! | TACTACACAGTTTTACATTA+GGG | + | chr4.2:87429994-87430013 | None:intergenic | 25.0% |
| !! | TCACATGCAACATTTTTAAT+TGG | + | chr4.2:87429263-87429282 | None:intergenic | 25.0% |
| !! | TTACTACACAGTTTTACATT+AGG | + | chr4.2:87429995-87430014 | None:intergenic | 25.0% |
| !! | TTCTGTGATATTTTGTGTAT+AGG | - | chr4.2:87430210-87430229 | MS.gene33405:intron | 25.0% |
| !! | TTTTACATTAGGGTTTCTTT+GGG | + | chr4.2:87429984-87430003 | None:intergenic | 25.0% |
| !! | TTTTTCTCTCACTAGTTATT+TGG | + | chr4.2:87431051-87431070 | None:intergenic | 25.0% |
| !!! | AAGTTGATTTGTTCAAGATT+TGG | + | chr4.2:87431449-87431468 | None:intergenic | 25.0% |
| !!! | AGAATTTTAACCGAACTTTA+AGG | - | chr4.2:87429771-87429790 | MS.gene33405:intron | 25.0% |
| !!! | GTATGACATTTTTTAAAACG+GGG | - | chr4.2:87428756-87428775 | MS.gene33405:intron | 25.0% |
| !!! | TCTCTTTTTTAAGAAAGAGA+CGG | - | chr4.2:87429564-87429583 | MS.gene33405:intron | 25.0% |
| !!! | TTGTTTTTGTTTTTGCAAGA+GGG | - | chr4.2:87430533-87430552 | MS.gene33405:CDS | 25.0% |
| !!! | TTTCTCTAATTTTTGGAACA+GGG | + | chr4.2:87430464-87430483 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGTTTTTGCAAG+AGG | - | chr4.2:87430532-87430551 | MS.gene33405:CDS | 25.0% |
| AAAAAGAACAAACCCAGTAA+AGG | + | chr4.2:87428622-87428641 | None:intergenic | 30.0% | |
| AAAAGAACAAACCCAGTAAA+GGG | + | chr4.2:87428621-87428640 | None:intergenic | 30.0% | |
| AATCAAAATCAGAATGGAAG+AGG | + | chr4.2:87430188-87430207 | None:intergenic | 30.0% | |
| AGTGGAAGTAATCAAATCAA+TGG | + | chr4.2:87429343-87429362 | None:intergenic | 30.0% | |
| ATAGCCAAATAAATCTCACT+TGG | - | chr4.2:87430413-87430432 | MS.gene33405:intron | 30.0% | |
| ATCAAAATCAGAATGGAAGA+GGG | + | chr4.2:87430187-87430206 | None:intergenic | 30.0% | |
| ATTTCTCTCAAACCAATCAA+AGG | + | chr4.2:87430866-87430885 | None:intergenic | 30.0% | |
| CAAAAAACAAGCAGAAACTT+AGG | + | chr4.2:87429597-87429616 | None:intergenic | 30.0% | |
| CAAATCAACTTCAGATATCT+TGG | - | chr4.2:87431458-87431477 | MS.gene33405:CDS | 30.0% | |
| CATCAACTGTACAAAATTTC+AGG | + | chr4.2:87429220-87429239 | None:intergenic | 30.0% | |
| CCAAACATAACCTTAAAGTT+CGG | + | chr4.2:87429784-87429803 | None:intergenic | 30.0% | |
| CTCAATAGCTATATTGACAA+AGG | + | chr4.2:87430118-87430137 | None:intergenic | 30.0% | |
| CTTTGTCAATATAGCTATTG+AGG | - | chr4.2:87430116-87430135 | MS.gene33405:intron | 30.0% | |
| TAGCCAAATAAATCTCACTT+GGG | - | chr4.2:87430414-87430433 | MS.gene33405:intron | 30.0% | |
| TAGTTAGTTCAAACACTAAG+GGG | + | chr4.2:87429154-87429173 | None:intergenic | 30.0% | |
| TCAACTGTACAAAATTTCAG+GGG | + | chr4.2:87429218-87429237 | None:intergenic | 30.0% | |
| TTTCTCTCAAACCAATCAAA+GGG | + | chr4.2:87430865-87430884 | None:intergenic | 30.0% | |
| ! | AAGAGAGTGTAAAGAGATAA+AGG | + | chr4.2:87431023-87431042 | None:intergenic | 30.0% |
| ! | ATTCCTGATTTTCAATCACA+GGG | - | chr4.2:87429411-87429430 | MS.gene33405:intron | 30.0% |
| ! | GAAGAGAAACAGAGAAATTT+TGG | + | chr4.2:87428588-87428607 | None:intergenic | 30.0% |
| ! | GTTTGTTGATGTTTAAACAG+TGG | - | chr4.2:87429616-87429635 | MS.gene33405:intron | 30.0% |
| ! | GTTTTACATTAGGGTTTCTT+TGG | + | chr4.2:87429985-87430004 | None:intergenic | 30.0% |
| !! | CGAACTTTAAGGTTATGTTT+GGG | - | chr4.2:87429782-87429801 | MS.gene33405:intron | 30.0% |
| !! | GATGAATTGATGGATTGATT+TGG | - | chr4.2:87430560-87430579 | MS.gene33405:intron | 30.0% |
| !! | TATTTTGCTTCCACTGATTA+AGG | - | chr4.2:87429907-87429926 | MS.gene33405:intron | 30.0% |
| !!! | CTTTACCATGTTTTTTACAC+AGG | - | chr4.2:87429057-87429076 | MS.gene33405:intron | 30.0% |
| !!! | GTTTCTCTAATTTTTGGAAC+AGG | + | chr4.2:87430465-87430484 | None:intergenic | 30.0% |
| !!! | TTCTCTAATTTTTGGAACAG+GGG | + | chr4.2:87430463-87430482 | None:intergenic | 30.0% |
| AAACTGTGTAGTAACATTCC+CGG | - | chr4.2:87430001-87430020 | MS.gene33405:intron | 35.0% | |
| ACTTTGAACCGAGTATTTCA+AGG | - | chr4.2:87430029-87430048 | MS.gene33405:intron | 35.0% | |
| AGAATGAATGTCACCAATGT+CGG | + | chr4.2:87430093-87430112 | None:intergenic | 35.0% | |
| AGTACCAAACTTCTTCTCAT+TGG | - | chr4.2:87430919-87430938 | MS.gene33405:intron | 35.0% | |
| AGTTAGTTCAAACACTAAGG+GGG | + | chr4.2:87429153-87429172 | None:intergenic | 35.0% | |
| ATAAAGCTCCCACATACATA+GGG | - | chr4.2:87429007-87429026 | MS.gene33405:intron | 35.0% | |
| ATCAGGAATCAGGAACATTT+AGG | + | chr4.2:87429400-87429419 | None:intergenic | 35.0% | |
| ATGTGTATACTCATGTCATG+AGG | - | chr4.2:87430314-87430333 | MS.gene33405:CDS | 35.0% | |
| CAACTGTACAAAATTTCAGG+GGG | + | chr4.2:87429217-87429236 | None:intergenic | 35.0% | |
| CTTGAATAAGAGATAGCGAT+AGG | + | chr4.2:87430637-87430656 | None:intergenic | 35.0% | |
| GAAACTAAAAGAGAAGGGTA+TGG | + | chr4.2:87429953-87429972 | None:intergenic | 35.0% | |
| GATAACTGGCAATTTGTCAA+TGG | + | chr4.2:87430236-87430255 | None:intergenic | 35.0% | |
| GGATCAATCAAGTGAGAAAT+AGG | + | chr4.2:87430833-87430852 | None:intergenic | 35.0% | |
| GGCATCAACAAATTTGATAG+CGG | - | chr4.2:87429701-87429720 | MS.gene33405:intron | 35.0% | |
| GTGATTGAAAATCAGGAATC+AGG | + | chr4.2:87429410-87429429 | None:intergenic | 35.0% | |
| GTGATTTCATAATTGAAGCG+AGG | - | chr4.2:87430739-87430758 | MS.gene33405:intron | 35.0% | |
| GTTCCAAAATAGTGCAAGAT+TGG | + | chr4.2:87429736-87429755 | None:intergenic | 35.0% | |
| TAAAAAAGAGACGAGAACGA+CGG | + | chr4.2:87429555-87429574 | None:intergenic | 35.0% | |
| TCACTGTAAATCTCATTCTG+AGG | + | chr4.2:87431317-87431336 | None:intergenic | 35.0% | |
| TCAGGAATCAGGAACATTTA+GGG | + | chr4.2:87429399-87429418 | None:intergenic | 35.0% | |
| TGTTTGTGTTAGTGCTTCAT+AGG | - | chr4.2:87428887-87428906 | MS.gene33405:intron | 35.0% | |
| ! | ACACTCTTTTCAACATTTGG+AGG | - | chr4.2:87431152-87431171 | MS.gene33405:intron | 35.0% |
| ! | ATGAAGCACTAACACAAACA+CGG | + | chr4.2:87428887-87428906 | None:intergenic | 35.0% |
| ! | ATTTCAGGGGGCATATATTA+TGG | + | chr4.2:87429205-87429224 | None:intergenic | 35.0% |
| ! | CATTGGAATACTTTTCTCAG+TGG | - | chr4.2:87430273-87430292 | MS.gene33405:intron | 35.0% |
| ! | CTCACACTCTTTTCAACATT+TGG | - | chr4.2:87431149-87431168 | MS.gene33405:intron | 35.0% |
| ! | GATTCCTGATTTTCAATCAC+AGG | - | chr4.2:87429410-87429429 | MS.gene33405:intron | 35.0% |
| ! | TAAGGTTATGTTTGGGACAT+GGG | - | chr4.2:87429789-87429808 | MS.gene33405:intron | 35.0% |
| ! | TCACCAATCTTGCACTATTT+TGG | - | chr4.2:87429730-87429749 | MS.gene33405:CDS | 35.0% |
| ! | TTAAGGTTATGTTTGGGACA+TGG | - | chr4.2:87429788-87429807 | MS.gene33405:intron | 35.0% |
| ! | TTTGGGACATGGGTTTATAA+GGG | - | chr4.2:87429799-87429818 | MS.gene33405:intron | 35.0% |
| !! | CCGAACTTTAAGGTTATGTT+TGG | - | chr4.2:87429781-87429800 | MS.gene33405:intron | 35.0% |
| !! | TAACGTTCCATTTGTTGTGA+AGG | - | chr4.2:87429442-87429461 | MS.gene33405:intron | 35.0% |
| !! | TGCTCATTTTTGAACTTCAG+TGG | - | chr4.2:87429311-87429330 | MS.gene33405:intron | 35.0% |
| !!! | GTGATTTTAAGTTCACTCAC+TGG | - | chr4.2:87431333-87431352 | MS.gene33405:intron | 35.0% |
| !!! | TACCATGTTTTTTACACAGG+TGG | - | chr4.2:87429060-87429079 | MS.gene33405:intron | 35.0% |
| AAAAAAGAGACGAGAACGAC+GGG | + | chr4.2:87429554-87429573 | None:intergenic | 40.0% | |
| AACTGTTTCCAAACCAACCT+AGG | + | chr4.2:87431209-87431228 | None:intergenic | 40.0% | |
| ACTCGGTTCAAAGTTAACAC+CGG | + | chr4.2:87430023-87430042 | None:intergenic | 40.0% | |
| ACTGTTTCCAAACCAACCTA+GGG | + | chr4.2:87431208-87431227 | None:intergenic | 40.0% | |
| AGAGGGACTTGATGAATTGA+TGG | - | chr4.2:87430550-87430569 | MS.gene33405:CDS | 40.0% | |
| AGCCACCTGTGTAAAAAACA+TGG | + | chr4.2:87429065-87429084 | None:intergenic | 40.0% | |
| ATCTCTTATTCAAGCCTGAC+CGG | - | chr4.2:87430643-87430662 | MS.gene33405:intron | 40.0% | |
| ATGGCAGAAACTCATTTCCA+GGG | - | chr4.2:87428557-87428576 | MS.gene33405:intron | 40.0% | |
| ATGTCAAAAACCTAGGCATG+CGG | - | chr4.2:87428815-87428834 | MS.gene33405:intron | 40.0% | |
| CAATGAGTTCCAACGAAATC+GGG | + | chr4.2:87430258-87430277 | None:intergenic | 40.0% | |
| CATAAAGCTCCCACATACAT+AGG | - | chr4.2:87429006-87429025 | MS.gene33405:intron | 40.0% | |
| CCAAACCAAATAGTCCTAAC+CGG | + | chr4.2:87429656-87429675 | None:intergenic | 40.0% | |
| CCAATCAAAGGGTCATTAAC+AGG | + | chr4.2:87430854-87430873 | None:intergenic | 40.0% | |
| CCAATGAGTTCCAACGAAAT+CGG | + | chr4.2:87430259-87430278 | None:intergenic | 40.0% | |
| CCTGTTAATGACCCTTTGAT+TGG | - | chr4.2:87430851-87430870 | MS.gene33405:intron | 40.0% | |
| GATATAAATGCTTACCGGTC+AGG | + | chr4.2:87430660-87430679 | None:intergenic | 40.0% | |
| GCAACCAATGAGAAGAAGTT+TGG | + | chr4.2:87430926-87430945 | None:intergenic | 40.0% | |
| GCTCCCAAGTGAGATTTATT+TGG | + | chr4.2:87430420-87430439 | None:intergenic | 40.0% | |
| GTAGCTAACATCAGACAAAC+TGG | + | chr4.2:87430696-87430715 | None:intergenic | 40.0% | |
| GTGTTCGATGTCAAAAACCT+AGG | - | chr4.2:87428808-87428827 | MS.gene33405:intron | 40.0% | |
| TAAACAGTGGGATAAACCTG+AGG | - | chr4.2:87429629-87429648 | MS.gene33405:intron | 40.0% | |
| TAAGACACATCAGCAGAAAG+TGG | + | chr4.2:87429361-87429380 | None:intergenic | 40.0% | |
| TATCCAGGATCCTTAATCAG+TGG | + | chr4.2:87429920-87429939 | None:intergenic | 40.0% | |
| TCTCCCTGTGATTGAAAATC+AGG | + | chr4.2:87429417-87429436 | None:intergenic | 40.0% | |
| TGATGAGCAATGCACTAGTT+TGG | - | chr4.2:87429235-87429254 | MS.gene33405:intron | 40.0% | |
| TGGAAACAGTTGCATTGGAA+TGG | - | chr4.2:87431218-87431237 | MS.gene33405:intron | 40.0% | |
| TGGGGGAAACTAAAAGAGAA+GGG | + | chr4.2:87429958-87429977 | None:intergenic | 40.0% | |
| TTGGGACATGGGTTTATAAG+GGG | - | chr4.2:87429800-87429819 | MS.gene33405:intron | 40.0% | |
| TTGGGGGAAACTAAAAGAGA+AGG | + | chr4.2:87429959-87429978 | None:intergenic | 40.0% | |
| TTTCTGCCATGAAGCAACAA+TGG | + | chr4.2:87428547-87428566 | None:intergenic | 40.0% | |
| ! | ATTAGGGTTTCTTTGGGAGT+TGG | + | chr4.2:87429978-87429997 | None:intergenic | 40.0% |
| ! | CGGTTAGGACTATTTGGTTT+GGG | - | chr4.2:87429654-87429673 | MS.gene33405:intron | 40.0% |
| ! | GTTTGGGACATGGGTTTATA+AGG | - | chr4.2:87429798-87429817 | MS.gene33405:intron | 40.0% |
| ! | TATGTGGGAGCTTTATGCAT+GGG | + | chr4.2:87429003-87429022 | None:intergenic | 40.0% |
| ! | TGGTTTGGAAACAGTTGCAT+TGG | - | chr4.2:87431213-87431232 | MS.gene33405:intron | 40.0% |
| ! | TTAGGGTTTCTTTGGGAGTT+GGG | + | chr4.2:87429977-87429996 | None:intergenic | 40.0% |
| ! | TTCTCGAGAGTTTTCTAGGT+TGG | + | chr4.2:87430070-87430089 | None:intergenic | 40.0% |
| ! | TTCTCTGTTTCTCTTCTTCC+AGG | - | chr4.2:87428592-87428611 | MS.gene33405:intron | 40.0% |
| !! | CTGGTTTGGAATCGATTATG+AGG | + | chr4.2:87431178-87431197 | None:intergenic | 40.0% |
| !! | GAGAAATTTTGGAAGTTCCC+TGG | + | chr4.2:87428577-87428596 | None:intergenic | 40.0% |
| AAACCCAGTAAAGGGTTACC+TGG | + | chr4.2:87428613-87428632 | None:intergenic | 45.0% | |
| AAACTCTCGAGAACCGACAT+TGG | - | chr4.2:87430077-87430096 | MS.gene33405:intron | 45.0% | |
| AACAGTCACGAGTTCAAGTC+TGG | + | chr4.2:87429092-87429111 | None:intergenic | 45.0% | |
| AAGGGGAAGAGAAGAGCTTA+TGG | - | chr4.2:87429817-87429836 | MS.gene33405:intron | 45.0% | |
| ATACATAGGGTCCCACCATT+TGG | - | chr4.2:87429020-87429039 | MS.gene33405:intron | 45.0% | |
| CATGGCAGAAACTCATTTCC+AGG | - | chr4.2:87428556-87428575 | MS.gene33405:intron | 45.0% | |
| CCAGAAGCCTTCACAACAAA+TGG | + | chr4.2:87429452-87429471 | None:intergenic | 45.0% | |
| CCGATTTCGTTGGAACTCAT+TGG | - | chr4.2:87430256-87430275 | MS.gene33405:intron | 45.0% | |
| CCGGTTAGGACTATTTGGTT+TGG | - | chr4.2:87429653-87429672 | MS.gene33405:intron | 45.0% | |
| CTCGGTTCAAAGTTAACACC+GGG | + | chr4.2:87430022-87430041 | None:intergenic | 45.0% | |
| CTGTTTCCAAACCAACCTAG+GGG | + | chr4.2:87431207-87431226 | None:intergenic | 45.0% | |
| CTTCCAGGTAACCCTTTACT+GGG | - | chr4.2:87428607-87428626 | MS.gene33405:intron | 45.0% | |
| GACACAAGCTTGCATGTGTA+GGG | + | chr4.2:87428937-87428956 | None:intergenic | 45.0% | |
| TATGGAGTAGTGGTGTATCC+AGG | + | chr4.2:87429935-87429954 | None:intergenic | 45.0% | |
| TCCAACGAAATCGGGATAAC+TGG | + | chr4.2:87430250-87430269 | None:intergenic | 45.0% | |
| TCTTCCAGGTAACCCTTTAC+TGG | - | chr4.2:87428606-87428625 | MS.gene33405:intron | 45.0% | |
| TGACACAAGCTTGCATGTGT+AGG | + | chr4.2:87428938-87428957 | None:intergenic | 45.0% | |
| TGGTGGCAAGCTTGCAATAA+TGG | + | chr4.2:87428524-87428543 | None:intergenic | 45.0% | |
| TGTGCTATGCACCAAATGGT+GGG | + | chr4.2:87429034-87429053 | None:intergenic | 45.0% | |
| ! | AAGAGAAGGGTATGGAGTAG+TGG | + | chr4.2:87429945-87429964 | None:intergenic | 45.0% |
| ! | ATGTGGGAGCTTTATGCATG+GGG | + | chr4.2:87429002-87429021 | None:intergenic | 45.0% |
| ! | CTTCCACTGATTAAGGATCC+TGG | - | chr4.2:87429914-87429933 | MS.gene33405:intron | 45.0% |
| ! | CTTCTCATTGGTTGCAAGAG+AGG | - | chr4.2:87430931-87430950 | MS.gene33405:intron | 45.0% |
| ! | GTATGTGGGAGCTTTATGCA+TGG | + | chr4.2:87429004-87429023 | None:intergenic | 45.0% |
| ! | TAGGGTTTCTTTGGGAGTTG+GGG | + | chr4.2:87429976-87429995 | None:intergenic | 45.0% |
| ! | TCGGTTCTCGAGAGTTTTCT+AGG | + | chr4.2:87430074-87430093 | None:intergenic | 45.0% |
| !! | AAGATTCCCCTAGGTTGGTT+TGG | - | chr4.2:87431198-87431217 | MS.gene33405:intron | 45.0% |
| !! | CCATTTGTTGTGAAGGCTTC+TGG | - | chr4.2:87429449-87429468 | MS.gene33405:intron | 45.0% |
| AATAGTCCTAACCGGTCCTC+AGG | + | chr4.2:87429648-87429667 | None:intergenic | 50.0% | |
| ACCAACCTAGGGGAATCTTC+TGG | + | chr4.2:87431197-87431216 | None:intergenic | 50.0% | |
| ACCAGAAGATTCCCCTAGGT+TGG | - | chr4.2:87431193-87431212 | MS.gene33405:intron | 50.0% | |
| AGTGGGATAAACCTGAGGAC+CGG | - | chr4.2:87429634-87429653 | MS.gene33405:intron | 50.0% | |
| CCAAACCAGAAGATTCCCCT+AGG | - | chr4.2:87431189-87431208 | MS.gene33405:intron | 50.0% | |
| CCATGAAGCAACAATGGTGG+TGG | + | chr4.2:87428541-87428560 | None:intergenic | 50.0% | |
| CTGCCATGAAGCAACAATGG+TGG | + | chr4.2:87428544-87428563 | None:intergenic | 50.0% | |
| GAGGACCGGTTAGGACTATT+TGG | - | chr4.2:87429648-87429667 | MS.gene33405:intron | 50.0% | |
| GATAAACCTGAGGACCGGTT+AGG | - | chr4.2:87429639-87429658 | MS.gene33405:intron | 50.0% | |
| GCCAGTTATCCCGATTTCGT+TGG | - | chr4.2:87430246-87430265 | MS.gene33405:intron | 50.0% | |
| GCTGTGTGCTATGCACCAAA+TGG | + | chr4.2:87429038-87429057 | None:intergenic | 50.0% | |
| GTGTGCTATGCACCAAATGG+TGG | + | chr4.2:87429035-87429054 | None:intergenic | 50.0% | |
| TGCAGCTGTAGTAGCGCTTT+GGG | - | chr4.2:87429680-87429699 | MS.gene33405:intron | 50.0% | |
| TGGTGGGACCCTATGTATGT+GGG | + | chr4.2:87429018-87429037 | None:intergenic | 50.0% | |
| TTAAACGTAGCCGCATGCCT+AGG | + | chr4.2:87428828-87428847 | None:intergenic | 50.0% | |
| TTGCAGCTGTAGTAGCGCTT+TGG | - | chr4.2:87429679-87429698 | MS.gene33405:intron | 50.0% | |
| ! | AGGGTTTCTTTGGGAGTTGG+GGG | + | chr4.2:87429975-87429994 | None:intergenic | 50.0% |
| ! | ATGGTGGGACCCTATGTATG+TGG | + | chr4.2:87429019-87429038 | None:intergenic | 50.0% |
| ! | CCACCACCATTGTTGCTTCA+TGG | - | chr4.2:87428538-87428557 | MS.gene33405:CDS | 50.0% |
| ! | CCTAGGGGAATCTTCTGGTT+TGG | + | chr4.2:87431192-87431211 | None:intergenic | 50.0% |
| CAAACACTAAGGGGGAGCCT+TGG | + | chr4.2:87429145-87429164 | None:intergenic | 55.0% | |
| CACAACCTGCGAAGCGCAAA+TGG | + | chr4.2:87431257-87431276 | None:intergenic | 55.0% | |
| TATGCATGGGGCTGTGTGCA+CGG | + | chr4.2:87428990-87429009 | None:intergenic | 55.0% | |
| TCGTTCCATTTGCGCTTCGC+AGG | - | chr4.2:87431249-87431268 | MS.gene33405:intron | 55.0% | |
| ACAACTTTACCGCCGCGCCA+AGG | - | chr4.2:87429125-87429144 | MS.gene33405:intron | 60.0% | |
| ACGAGAACGACGGGAGTGGT+AGG | + | chr4.2:87429545-87429564 | None:intergenic | 60.0% | |
| AGAGACGAGAACGACGGGAG+TGG | + | chr4.2:87429549-87429568 | None:intergenic | 60.0% | |
| ATGCATGGGGCTGTGTGCAC+GGG | + | chr4.2:87428989-87429008 | None:intergenic | 60.0% | |
| ACTAAGGGGGAGCCTTGGCG+CGG | + | chr4.2:87429140-87429159 | None:intergenic | 65.0% | |
| TGCATGGGGCTGTGTGCACG+GGG | + | chr4.2:87428988-87429007 | None:intergenic | 65.0% | |
| AAGGGGGAGCCTTGGCGCGG+CGG | + | chr4.2:87429137-87429156 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 87428514 | 87431488 | 87428514 | ID=MS.gene33405 |
| chr4.2 | mRNA | 87428514 | 87431488 | 87428514 | ID=MS.gene33405.t1;Parent=MS.gene33405 |
| chr4.2 | exon | 87431389 | 87431488 | 87431389 | ID=MS.gene33405.t1.exon1;Parent=MS.gene33405.t1 |
| chr4.2 | CDS | 87431389 | 87431488 | 87431389 | ID=cds.MS.gene33405.t1;Parent=MS.gene33405.t1 |
| chr4.2 | exon | 87430476 | 87430570 | 87430476 | ID=MS.gene33405.t1.exon2;Parent=MS.gene33405.t1 |
| chr4.2 | CDS | 87430476 | 87430570 | 87430476 | ID=cds.MS.gene33405.t1;Parent=MS.gene33405.t1 |
| chr4.2 | exon | 87430280 | 87430366 | 87430280 | ID=MS.gene33405.t1.exon3;Parent=MS.gene33405.t1 |
| chr4.2 | CDS | 87430280 | 87430366 | 87430280 | ID=cds.MS.gene33405.t1;Parent=MS.gene33405.t1 |
| chr4.2 | exon | 87429708 | 87429770 | 87429708 | ID=MS.gene33405.t1.exon4;Parent=MS.gene33405.t1 |
| chr4.2 | CDS | 87429708 | 87429770 | 87429708 | ID=cds.MS.gene33405.t1;Parent=MS.gene33405.t1 |
| chr4.2 | exon | 87429338 | 87429375 | 87429338 | ID=MS.gene33405.t1.exon5;Parent=MS.gene33405.t1 |
| chr4.2 | CDS | 87429338 | 87429375 | 87429338 | ID=cds.MS.gene33405.t1;Parent=MS.gene33405.t1 |
| chr4.2 | exon | 87428514 | 87428568 | 87428514 | ID=MS.gene33405.t1.exon6;Parent=MS.gene33405.t1 |
| chr4.2 | CDS | 87428514 | 87428568 | 87428514 | ID=cds.MS.gene33405.t1;Parent=MS.gene33405.t1 |
| Gene Sequence |
| Protein sequence |
