Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35121.t1 | XP_013457315.1 | 95.1 | 950 | 42 | 2 | 1 | 949 | 1 | 946 | 0.00E+00 | 1790.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35121.t1 | Q9C5Q8 | 47.7 | 977 | 430 | 16 | 8 | 947 | 1 | 933 | 4.4e-228 | 792.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35121.t1 | A0A072UPT2 | 95.1 | 950 | 42 | 2 | 1 | 949 | 1 | 946 | 0.0e+00 | 1790.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene35121 | 0.860503 | 1.97E-63 | -1.69E-46 |
| MS.gene049254 | MS.gene35121 | 0.811591 | 6.48E-51 | -1.69E-46 |
| MS.gene049343 | MS.gene35121 | 0.817353 | 3.45E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene35121 | 0.806416 | 8.31E-50 | -1.69E-46 |
| MS.gene049435 | MS.gene35121 | 0.806758 | 7.04E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene35121 | 0.821519 | 3.87E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene35121 | 0.812309 | 4.52E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene35121 | 0.818726 | 1.69E-52 | -1.69E-46 |
| MS.gene050105 | MS.gene35121 | 0.802415 | 5.67E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene35121 | 0.818931 | 1.51E-52 | -1.69E-46 |
| MS.gene050605 | MS.gene35121 | 0.855494 | 6.08E-62 | -1.69E-46 |
| MS.gene050759 | MS.gene35121 | 0.840009 | 1.13E-57 | -1.69E-46 |
| MS.gene050962 | MS.gene35121 | 0.829242 | 5.74E-55 | -1.69E-46 |
| MS.gene051198 | MS.gene35121 | 0.83027 | 3.23E-55 | -1.69E-46 |
| MS.gene051363 | MS.gene35121 | 0.810662 | 1.03E-50 | -1.69E-46 |
| MS.gene051368 | MS.gene35121 | 0.81524 | 1.02E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene35121 | 0.816047 | 6.76E-52 | -1.69E-46 |
| MS.gene052012 | MS.gene35121 | 0.825807 | 3.83E-54 | -1.69E-46 |
| MS.gene052108 | MS.gene35121 | 0.811544 | 6.64E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene35121 | 0.817036 | 4.06E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene35121 | 0.81485 | 1.25E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene35121 | 0.806774 | 6.99E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene35121 | 0.81719 | 3.75E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene35121 | 0.802041 | 6.77E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene35121 | 0.804335 | 2.27E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene35121 | 0.827379 | 1.62E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene35121 | 0.815617 | 8.44E-52 | -1.69E-46 |
| MS.gene053080 | MS.gene35121 | 0.802232 | 6.18E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene35121 | 0.802795 | 4.74E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene35121 | 0.852321 | 4.98E-61 | -1.69E-46 |
| MS.gene053296 | MS.gene35121 | 0.80527 | 1.45E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene35121 | 0.806084 | 9.76E-50 | -1.69E-46 |
| MS.gene053931 | MS.gene35121 | 0.816528 | 5.28E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene35121 | 0.800209 | 1.60E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene35121 | 0.806378 | 8.47E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene35121 | 0.826891 | 2.12E-54 | -1.69E-46 |
| MS.gene054657 | MS.gene35121 | 0.84176 | 3.91E-58 | -1.69E-46 |
| MS.gene054658 | MS.gene35121 | 0.801303 | 9.59E-49 | -1.69E-46 |
| MS.gene054994 | MS.gene35121 | 0.824003 | 1.02E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene35121 | 0.813959 | 1.97E-51 | -1.69E-46 |
| MS.gene055166 | MS.gene35121 | 0.817286 | 3.57E-52 | -1.69E-46 |
| MS.gene05517 | MS.gene35121 | 0.818315 | 2.09E-52 | -1.69E-46 |
| MS.gene055222 | MS.gene35121 | 0.850605 | 1.52E-60 | -1.69E-46 |
| MS.gene055512 | MS.gene35121 | 0.815583 | 8.58E-52 | -1.69E-46 |
| MS.gene055623 | MS.gene35121 | 0.816007 | 6.90E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene35121 | 0.803664 | 3.13E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene35121 | 0.811115 | 8.23E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene35121 | 0.829095 | 6.23E-55 | -1.69E-46 |
| MS.gene05659 | MS.gene35121 | 0.802745 | 4.85E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene35121 | 0.818945 | 1.50E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene35121 | 0.832937 | 7.11E-56 | -1.69E-46 |
| MS.gene057693 | MS.gene35121 | 0.820432 | 6.88E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene35121 | 0.812212 | 4.75E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene35121 | 0.806691 | 7.28E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene35121 | 0.819088 | 1.40E-52 | -1.69E-46 |
| MS.gene058146 | MS.gene35121 | 0.806214 | 9.17E-50 | -1.69E-46 |
| MS.gene058548 | MS.gene35121 | 0.817333 | 3.48E-52 | -1.69E-46 |
| MS.gene058549 | MS.gene35121 | 0.803042 | 4.21E-49 | -1.69E-46 |
| MS.gene058595 | MS.gene35121 | 0.805747 | 1.15E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene35121 | 0.841558 | 4.42E-58 | -1.69E-46 |
| MS.gene05979 | MS.gene35121 | 0.825565 | 4.37E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene35121 | 0.814383 | 1.58E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene35121 | 0.818392 | 2.01E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene35121 | 0.802793 | 4.74E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene35121 | 0.811212 | 7.84E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene35121 | 0.842996 | 1.84E-58 | -1.69E-46 |
| MS.gene060935 | MS.gene35121 | 0.80011 | 1.68E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35121.t1 | MTR_4g094545 | 95.053 | 950 | 42 | 2 | 1 | 949 | 1 | 946 | 0.0 | 1857 |
| MS.gene35121.t1 | MTR_4g094545 | 95.102 | 735 | 31 | 2 | 216 | 949 | 1 | 731 | 0.0 | 1442 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35121.t1 | AT4G20910 | 48.632 | 950 | 455 | 13 | 8 | 944 | 1 | 930 | 0.0 | 835 |
| MS.gene35121.t1 | AT4G20910 | 48.632 | 950 | 455 | 13 | 8 | 944 | 1 | 930 | 0.0 | 835 |
| MS.gene35121.t1 | AT4G20920 | 41.730 | 786 | 387 | 17 | 8 | 763 | 1 | 745 | 8.73e-178 | 535 |
| MS.gene35121.t1 | AT4G20920 | 41.730 | 786 | 387 | 17 | 8 | 763 | 1 | 745 | 8.73e-178 | 535 |
| MS.gene35121.t1 | AT4G20920 | 41.730 | 786 | 387 | 17 | 8 | 763 | 1 | 745 | 8.73e-178 | 535 |
| MS.gene35121.t1 | AT4G20920 | 41.094 | 786 | 376 | 18 | 8 | 763 | 1 | 729 | 4.82e-170 | 514 |
| MS.gene35121.t1 | AT4G20920 | 41.094 | 786 | 376 | 18 | 8 | 763 | 1 | 729 | 4.82e-170 | 514 |
Find 206 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCATTGCAGCTTGATTT+TGG | 0.099534 | 4.4:+19773929 | MS.gene35121:intron |
| ACTACATTGTATTCAAAATT+TGG | 0.173974 | 4.4:-19776176 | None:intergenic |
| CGTCCAATTCTTCTTGTTCT+TGG | 0.180888 | 4.4:-19776223 | None:intergenic |
| GAAGATCAAGCTTGTCTCTT+TGG | 0.252238 | 4.4:+19776104 | MS.gene35121:CDS |
| GTGAAATAAAGTTGCTTTCT+CGG | 0.254391 | 4.4:+19772961 | MS.gene35121:CDS |
| CTCTGGAGGTTCTGCAACTT+TGG | 0.257411 | 4.4:-19773742 | None:intergenic |
| AAGATCAAGCTTGTCTCTTT+GGG | 0.262347 | 4.4:+19776105 | MS.gene35121:CDS |
| GTAGCAGCCCTTACTATATA+TGG | 0.276604 | 4.4:-19771452 | None:intergenic |
| TTTCTATACAGGATGCTTCT+AGG | 0.281845 | 4.4:+19772633 | MS.gene35121:intron |
| TGTCCAAAGCAATCAGATTC+AGG | 0.283086 | 4.4:+19772927 | MS.gene35121:CDS |
| TTACAAGACATGTTAGTAAA+TGG | 0.283885 | 4.4:+19773263 | MS.gene35121:CDS |
| TAACTGTTCGGTTATATTAC+AGG | 0.285137 | 4.4:+19772039 | MS.gene35121:CDS |
| ATAGCCATTATAATGTAATA+TGG | 0.293113 | 4.4:+19776477 | MS.gene35121:CDS |
| CAGACAGCAATGACAGAAAT+AGG | 0.302121 | 4.4:-19771359 | None:intergenic |
| TCTATAATATCTTGTGGATA+TGG | 0.304654 | 4.4:-19771533 | None:intergenic |
| ATTCCCATATTACATTATAA+TGG | 0.306928 | 4.4:-19776481 | None:intergenic |
| GCCAACGGGGCCTCTGTAAA+TGG | 0.312707 | 4.4:+19772903 | MS.gene35121:CDS |
| GATTTACCACAAGAGTTAAC+TGG | 0.321328 | 4.4:+19772721 | MS.gene35121:CDS |
| TTACATCTGAACAACATATC+TGG | 0.321631 | 4.4:+19771495 | MS.gene35121:CDS |
| TATTAGTTATTCAGTATCTT+TGG | 0.322059 | 4.4:+19773352 | MS.gene35121:CDS |
| AGATATTATAGAGTCGTTAA+TGG | 0.324864 | 4.4:+19771544 | MS.gene35121:CDS |
| ATCCGCTCAGTGGTCACATT+CGG | 0.329096 | 4.4:+19771297 | MS.gene35121:CDS |
| GTAGAAACAATAAGAATCTT+TGG | 0.332039 | 4.4:-19776152 | None:intergenic |
| TTTGAGAGGATGACTTATAA+TGG | 0.337624 | 4.4:-19772814 | None:intergenic |
| GCCTGCTCCATTCTTTCCTC+TGG | 0.340683 | 4.4:-19773759 | None:intergenic |
| GTTCCCCTGAGGATTGTTAT+AGG | 0.348614 | 4.4:+19773006 | MS.gene35121:CDS |
| GTATTATAGCCTTCGGTGTA+AGG | 0.357215 | 4.4:-19769074 | None:intergenic |
| ATGTGGATCTGGAAGCTTGC+TGG | 0.357548 | 4.4:+19773952 | MS.gene35121:CDS |
| AGAAGATAAGGACGGCATTA+TGG | 0.360060 | 4.4:-19773561 | None:intergenic |
| ACTGGAGGGGTTCCCTTCCT+AGG | 0.364152 | 4.4:+19772739 | MS.gene35121:CDS |
| GTTGAGGCCATACGCATTCC+TGG | 0.367253 | 4.4:+19771596 | MS.gene35121:CDS |
| ATTCTTCTTGTTCTTGGGTA+GGG | 0.367654 | 4.4:-19776217 | None:intergenic |
| TGGTCCTTCCATATATAGTA+AGG | 0.370607 | 4.4:+19771444 | MS.gene35121:CDS |
| GTTCTTGTCACACCAGCATC+TGG | 0.379015 | 4.4:-19775141 | None:intergenic |
| AGGTTGCATGGGTTTGATAT+TGG | 0.381505 | 4.4:+19775216 | MS.gene35121:CDS |
| TACCCAAGAACAAGAAGAAT+TGG | 0.381585 | 4.4:+19776220 | MS.gene35121:CDS |
| ATCCCTGAATCTGATTGCTT+TGG | 0.384080 | 4.4:-19772930 | None:intergenic |
| GTCCAATTCTTCTTGTTCTT+GGG | 0.384367 | 4.4:-19776222 | None:intergenic |
| TGATATTGGTACTTGTTTAG+AGG | 0.385962 | 4.4:+19775230 | MS.gene35121:CDS |
| AGCTTGTCTCTTTGGGGATG+TGG | 0.389014 | 4.4:+19776112 | MS.gene35121:CDS |
| AGAATCACATGCTACTACTT+TGG | 0.389905 | 4.4:+19773839 | MS.gene35121:CDS |
| AATGTGGAGTTTAGTGGGGT+TGG | 0.390171 | 4.4:+19776356 | MS.gene35121:CDS |
| AGCTGTGAGTAGTGCCTCTC+TGG | 0.390358 | 4.4:-19772685 | None:intergenic |
| TGTGGCTCCAATAGGAATAT+AGG | 0.393034 | 4.4:+19771801 | MS.gene35121:intron |
| GCTATAATACACCAAAAGTT+TGG | 0.393808 | 4.4:+19769087 | MS.gene35121:CDS |
| GATATCATTGCAAATGAACT+TGG | 0.395132 | 4.4:+19771680 | MS.gene35121:CDS |
| CTCTGGTCCACTCAAATTTG+TGG | 0.398261 | 4.4:-19776286 | None:intergenic |
| GTGGAGTTTAGTGGGGTTGG+TGG | 0.404034 | 4.4:+19776359 | MS.gene35121:CDS |
| TCCGCTCAGTGGTCACATTC+GGG | 0.404773 | 4.4:+19771298 | MS.gene35121:CDS |
| TGCTTCTAGGGAAGACTCCC+GGG | 0.405633 | 4.4:+19772646 | MS.gene35121:CDS |
| TAGAGATCCTTCAAAATGAA+TGG | 0.409255 | 4.4:-19771913 | None:intergenic |
| TGGTGTTGATATTTCACAAA+AGG | 0.412817 | 4.4:+19774015 | MS.gene35121:CDS |
| TTCTTCTTGTTCTTGGGTAG+GGG | 0.415292 | 4.4:-19776216 | None:intergenic |
| GAAACTTGCATGACTGTAAG+AGG | 0.415750 | 4.4:-19776253 | None:intergenic |
| AATTCTTCTTGTTCTTGGGT+AGG | 0.417688 | 4.4:-19776218 | None:intergenic |
| TTATTCAGTATCTTTGGTTG+TGG | 0.422053 | 4.4:+19773358 | MS.gene35121:CDS |
| ACTCTTGTGGTAAATCTTGA+AGG | 0.423724 | 4.4:-19772714 | None:intergenic |
| TGATTCACAAGAATGCATTC+AGG | 0.428117 | 4.4:+19771574 | MS.gene35121:CDS |
| AATGAGTTTGAGTTTGAGAT+TGG | 0.429249 | 4.4:+19773416 | MS.gene35121:CDS |
| AATTATAATGTGGAGTTTAG+TGG | 0.438708 | 4.4:+19776350 | MS.gene35121:CDS |
| TTCAGTATCTTTGGTTGTGG+AGG | 0.439928 | 4.4:+19773361 | MS.gene35121:CDS |
| ATTATAATGTGGAGTTTAGT+GGG | 0.440196 | 4.4:+19776351 | MS.gene35121:CDS |
| TGCTTCCTATAACAATCCTC+AGG | 0.441318 | 4.4:-19773011 | None:intergenic |
| CATGGACAGACACCAGAGTC+TGG | 0.442267 | 4.4:-19773311 | None:intergenic |
| AATGCAGGTGATTGAACATA+TGG | 0.443555 | 4.4:+19776079 | MS.gene35121:intron |
| GGGTCAATGTTCTGATTTCA+AGG | 0.444176 | 4.4:+19771714 | MS.gene35121:CDS |
| TGCTCCATTCTTTCCTCTGG+AGG | 0.447746 | 4.4:-19773756 | None:intergenic |
| GCAAGGGCAAGATACTTGTC+TGG | 0.448127 | 4.4:+19771939 | MS.gene35121:CDS |
| ACTTCGCTGGAGAAAATTGC+TGG | 0.452004 | 4.4:+19773995 | MS.gene35121:CDS |
| TACACTGCATTGCATAAAGA+TGG | 0.458498 | 4.4:-19773208 | None:intergenic |
| CAACCAGTGGGCATCTGACT+TGG | 0.460111 | 4.4:+19776316 | MS.gene35121:CDS |
| CATACGCATTCCTGGTTCAA+TGG | 0.462240 | 4.4:+19771604 | MS.gene35121:CDS |
| GTTCATTTGCAATGATATCA+AGG | 0.464150 | 4.4:-19771676 | None:intergenic |
| CAATTACAATCTCTCTGAAA+AGG | 0.464973 | 4.4:-19773166 | None:intergenic |
| GAGGTTCAGACAGGCGATGC+TGG | 0.468726 | 4.4:-19772785 | None:intergenic |
| TCTTCTTGTTCTTGGGTAGG+GGG | 0.468837 | 4.4:-19776215 | None:intergenic |
| TCGTGTTGAAATAAGCATAC+TGG | 0.468944 | 4.4:-19773493 | None:intergenic |
| CCACTGGTTGAACTGTTCTC+TGG | 0.472971 | 4.4:-19776303 | None:intergenic |
| ATGTGATTGAATGTGCCAAC+GGG | 0.477723 | 4.4:+19772889 | MS.gene35121:CDS |
| ACAAGAATGCATTCAGGTTG+AGG | 0.478281 | 4.4:+19771580 | MS.gene35121:CDS |
| GTCACATTCGGGCTAGTTTG+AGG | 0.478959 | 4.4:+19771309 | MS.gene35121:CDS |
| TTCTATACAGGATGCTTCTA+GGG | 0.481021 | 4.4:+19772634 | MS.gene35121:intron |
| GACTGCTGATCTTACTCCTC+AGG | 0.481482 | 4.4:+19770297 | MS.gene35121:CDS |
| AACGGATTTGACTCCACCTC+AGG | 0.481788 | 4.4:-19771419 | None:intergenic |
| TAGCCATTATAATGTAATAT+GGG | 0.483058 | 4.4:+19776478 | MS.gene35121:CDS |
| CTTGTCACAACTGTAAGTTC+TGG | 0.483370 | 4.4:-19769222 | None:intergenic |
| GTCTCATAGAGCCGTTCAAA+AGG | 0.485529 | 4.4:-19773107 | None:intergenic |
| ATGCTTCTAGGGAAGACTCC+CGG | 0.486091 | 4.4:+19772645 | MS.gene35121:CDS |
| AATGAACTTGGGTTAGAAGA+TGG | 0.487425 | 4.4:+19771692 | MS.gene35121:CDS |
| GTCTCTCAAAATGAATGTCC+AGG | 0.487786 | 4.4:+19769147 | MS.gene35121:CDS |
| TATCTATATCAGTATGCGTC+TGG | 0.487812 | 4.4:-19776457 | None:intergenic |
| GAACGGCTCTATGAGACTGC+AGG | 0.489975 | 4.4:+19773113 | MS.gene35121:CDS |
| TCCACTCGTTGCTTCGAAAG+TGG | 0.491008 | 4.4:-19773795 | None:intergenic |
| TCAGTATCTTTGGTTGTGGA+GGG | 0.493622 | 4.4:+19773362 | MS.gene35121:CDS |
| CATGACTTTGATGATTCAGT+TGG | 0.494187 | 4.4:-19772840 | None:intergenic |
| CCTCATTGAAACTTCTATCA+TGG | 0.495677 | 4.4:+19773054 | MS.gene35121:CDS |
| GGTGTTGATATTTCACAAAA+GGG | 0.495830 | 4.4:+19774016 | MS.gene35121:CDS |
| TATAGAGTCGTTAATGGAAG+AGG | 0.498379 | 4.4:+19771550 | MS.gene35121:CDS |
| ATAGCCTTCGGTGTAAGGGC+TGG | 0.499378 | 4.4:-19769069 | None:intergenic |
| TGCTCGACAATCATATCTAC+TGG | 0.502229 | 4.4:+19771857 | MS.gene35121:CDS |
| ATGAGTTTGAGTTTGAGATT+GGG | 0.503837 | 4.4:+19773417 | MS.gene35121:CDS |
| TTTGAGTTTGAGATTGGGGT+TGG | 0.504481 | 4.4:+19773422 | MS.gene35121:CDS |
| GTTTGCAGCTTAAAGATTGA+AGG | 0.507154 | 4.4:+19773287 | MS.gene35121:CDS |
| ATGAACTTGGGTTAGAAGAT+GGG | 0.510409 | 4.4:+19771693 | MS.gene35121:CDS |
| GGATAATTTGTAAATTCCCC+CGG | 0.513841 | 4.4:-19772664 | None:intergenic |
| TCTACGAGGATGTAACTGTT+CGG | 0.516452 | 4.4:+19772027 | MS.gene35121:CDS |
| ATAAAGATGGCCATTCTGAA+TGG | 0.516494 | 4.4:-19773195 | None:intergenic |
| AAATGCTTGCTATGTGGTAG+AGG | 0.517443 | 4.4:+19769113 | MS.gene35121:CDS |
| TTGCTGTGTTCAAAAGAGAA+TGG | 0.518521 | 4.4:+19776417 | MS.gene35121:CDS |
| GGGTCTTACACGGGCTGCAA+AGG | 0.518931 | 4.4:+19774036 | MS.gene35121:CDS |
| TCCAGAGGAAAGAATGGAGC+AGG | 0.519203 | 4.4:+19773758 | MS.gene35121:CDS |
| GCTAAATTACACAACTTCGC+TGG | 0.527947 | 4.4:+19773982 | MS.gene35121:CDS |
| TGAGTTTGAGTTTGAGATTG+GGG | 0.529855 | 4.4:+19773418 | MS.gene35121:CDS |
| TGTAATGAATTTGCACACAT+TGG | 0.532539 | 4.4:-19773245 | None:intergenic |
| AATATCAAACCCATGCAACC+TGG | 0.534074 | 4.4:-19775214 | None:intergenic |
| CTGGAGGGGTTCCCTTCCTA+GGG | 0.534132 | 4.4:+19772740 | MS.gene35121:CDS |
| ATATCATTGCAAATGAACTT+GGG | 0.536376 | 4.4:+19771681 | MS.gene35121:CDS |
| TTAGATGCAAATCCAGATGC+TGG | 0.537038 | 4.4:+19775129 | MS.gene35121:CDS |
| AGAGCAATCTGCTGCGGAGA+TGG | 0.537240 | 4.4:+19769269 | MS.gene35121:CDS |
| ATTATAATGTAATATGGGAA+TGG | 0.539053 | 4.4:+19776483 | MS.gene35121:CDS |
| TACAAAGAATATCCCTAGGA+AGG | 0.539793 | 4.4:-19772752 | None:intergenic |
| TTGAAGGATCTCTAAATGCA+AGG | 0.539876 | 4.4:+19771922 | MS.gene35121:CDS |
| AAGTAACTCACTAGAAGATA+AGG | 0.540577 | 4.4:-19773573 | None:intergenic |
| TGCTGTGATTTCATTCATTG+AGG | 0.544473 | 4.4:+19773445 | MS.gene35121:CDS |
| AACGACTCTATAATATCTTG+TGG | 0.544982 | 4.4:-19771539 | None:intergenic |
| GTCCAAAGCAATCAGATTCA+GGG | 0.545820 | 4.4:+19772928 | MS.gene35121:CDS |
| TCGAGCAGCAAAGAACAGTC+TGG | 0.546354 | 4.4:-19771841 | None:intergenic |
| ACTCGTTGCTTCGAAAGTGG+AGG | 0.548386 | 4.4:-19773792 | None:intergenic |
| AAGATTGAAGGTCCAGACTC+TGG | 0.551436 | 4.4:+19773299 | MS.gene35121:CDS |
| ATAGAGTCGTTAATGGAAGA+GGG | 0.553839 | 4.4:+19771551 | MS.gene35121:CDS |
| TGAAGGATCTCTAAATGCAA+GGG | 0.558644 | 4.4:+19771923 | MS.gene35121:CDS |
| TATTATAGCCTTCGGTGTAA+GGG | 0.559881 | 4.4:-19769073 | None:intergenic |
| GGTCCTTCCATATATAGTAA+GGG | 0.560300 | 4.4:+19771445 | MS.gene35121:CDS |
| CAGCCAAGTCAGATGCCCAC+TGG | 0.560908 | 4.4:-19776319 | None:intergenic |
| TATTTCATACTCCACACAGC+AGG | 0.561668 | 4.4:-19773712 | None:intergenic |
| TCCATTTACAGAGGCCCCGT+TGG | 0.563920 | 4.4:-19772904 | None:intergenic |
| ACCACAAGAGTTAACTGGAG+GGG | 0.564091 | 4.4:+19772726 | MS.gene35121:CDS |
| GCAATCTGTGAAGCAAAACC+TGG | 0.572230 | 4.4:-19776398 | None:intergenic |
| CATTGAACCAGGAATGCGTA+TGG | 0.572396 | 4.4:-19771603 | None:intergenic |
| ACCCCTCCAGTTAACTCTTG+TGG | 0.573297 | 4.4:-19772727 | None:intergenic |
| TGTGGTAGAGGAAGTGAAAG+AGG | 0.575307 | 4.4:+19769125 | MS.gene35121:CDS |
| TTGTCTGGGCAAGATATAGT+TGG | 0.579218 | 4.4:+19771954 | MS.gene35121:CDS |
| GTTGTGATGCAGATGTCTGT+TGG | 0.579624 | 4.4:+19773470 | MS.gene35121:CDS |
| TTTCACAAAAGGGTCTTACA+CGG | 0.579841 | 4.4:+19774026 | MS.gene35121:CDS |
| AGAACCTCCAGAGGAAAGAA+TGG | 0.579935 | 4.4:+19773752 | MS.gene35121:CDS |
| TCTGGTGTCTGTCCATGCAA+TGG | 0.586141 | 4.4:+19773317 | MS.gene35121:CDS |
| TGGAAAAGAGAGGTTCAGAC+AGG | 0.589880 | 4.4:-19772794 | None:intergenic |
| AAGAACAAGAAGAATTGGAC+GGG | 0.591882 | 4.4:+19776225 | MS.gene35121:CDS |
| CTCGTTGCTTCGAAAGTGGA+GGG | 0.592685 | 4.4:-19773791 | None:intergenic |
| TGTGATTTCATTCATTGAGG+AGG | 0.593480 | 4.4:+19773448 | MS.gene35121:CDS |
| GACAATCATATCTACTGGAT+CGG | 0.594881 | 4.4:+19771862 | MS.gene35121:CDS |
| GTCTGAGGAATGCTTAACCC+TGG | 0.596255 | 4.4:-19769165 | None:intergenic |
| TTATAATGTGGAGTTTAGTG+GGG | 0.596456 | 4.4:+19776352 | MS.gene35121:CDS |
| CAAGGTAAAGATCCATTGCA+TGG | 0.596851 | 4.4:-19773329 | None:intergenic |
| AAAGTTGCTTTCTCGGTGTG+CGG | 0.598256 | 4.4:+19772968 | MS.gene35121:CDS |
| TAAAGAGATGGCCTCGTCTG+AGG | 0.598998 | 4.4:-19769180 | None:intergenic |
| ATTGGTCAATCCATTCAGAA+TGG | 0.601077 | 4.4:+19773185 | MS.gene35121:CDS |
| CTGGAAGCTGCAGTGTGCAA+CGG | 0.601473 | 4.4:-19769203 | None:intergenic |
| GATGCAATCTTAGCATGCAT+CGG | 0.605209 | 4.4:+19771978 | MS.gene35121:CDS |
| AAGTCAGTTATTCTTTACGA+AGG | 0.605710 | 4.4:+19775171 | MS.gene35121:CDS |
| TGAACTTGGGTTAGAAGATG+GGG | 0.608969 | 4.4:+19771694 | MS.gene35121:CDS |
| CAAGGGCAAGATACTTGTCT+GGG | 0.609993 | 4.4:+19771940 | MS.gene35121:CDS |
| TGCGGAGATGGCTATAGAGA+AGG | 0.612624 | 4.4:+19769281 | MS.gene35121:CDS |
| ACAAAGAATATCCCTAGGAA+GGG | 0.615809 | 4.4:-19772751 | None:intergenic |
| CAAGAACAAGAAGAATTGGA+CGG | 0.620185 | 4.4:+19776224 | MS.gene35121:CDS |
| TTCACAAAAGGGTCTTACAC+GGG | 0.620229 | 4.4:+19774027 | MS.gene35121:CDS |
| AAACTTTCTTGTGCATCCTG+AGG | 0.621220 | 4.4:-19770313 | None:intergenic |
| TCCACTTTCGAAGCAACGAG+TGG | 0.622786 | 4.4:+19773794 | MS.gene35121:CDS |
| CAGAACTTACAGTTGTGACA+AGG | 0.625508 | 4.4:+19769223 | MS.gene35121:CDS |
| ATAATGACCACAAATTTGAG+TGG | 0.625955 | 4.4:+19776279 | MS.gene35121:CDS |
| GGATGCAGAGCAATCTGCTG+CGG | 0.627574 | 4.4:+19769263 | MS.gene35121:CDS |
| AAAACCAGCCCTTACACCGA+AGG | 0.628957 | 4.4:+19769065 | MS.gene35121:CDS |
| GCTTCTAGGGAAGACTCCCG+GGG | 0.629224 | 4.4:+19772647 | MS.gene35121:CDS |
| AAACTTGCATGACTGTAAGA+GGG | 0.629499 | 4.4:-19776252 | None:intergenic |
| GGGCATCTGACTTGGCTGCA+CGG | 0.629721 | 4.4:+19776324 | MS.gene35121:CDS |
| TCTCTCAAAATGAATGTCCA+GGG | 0.631429 | 4.4:+19769148 | MS.gene35121:CDS |
| GCTTCCTATAACAATCCTCA+GGG | 0.632807 | 4.4:-19773010 | None:intergenic |
| AGGACGAAGAGCGATCATTG+TGG | 0.633070 | 4.4:+19771329 | MS.gene35121:CDS |
| CTTTGGACATCCATTTACAG+AGG | 0.634735 | 4.4:-19772913 | None:intergenic |
| GATACTGAATAACTAATACA+AGG | 0.635441 | 4.4:-19773347 | None:intergenic |
| CAGCCCTTACTATATATGGA+AGG | 0.636193 | 4.4:-19771448 | None:intergenic |
| AACATACAAAGAATATCCCT+AGG | 0.642294 | 4.4:-19772756 | None:intergenic |
| AGATCAAGCTTGTCTCTTTG+GGG | 0.645589 | 4.4:+19776106 | MS.gene35121:CDS |
| CAAAGTTGCAGAACCTCCAG+AGG | 0.647199 | 4.4:+19773743 | MS.gene35121:CDS |
| AACGGCTCTATGAGACTGCA+GGG | 0.648196 | 4.4:+19773114 | MS.gene35121:CDS |
| AGTGTGCAACGGTAAAGAGA+TGG | 0.648687 | 4.4:-19769192 | None:intergenic |
| GTGTAAATGTATTAATCCTG+AGG | 0.650161 | 4.4:+19771403 | MS.gene35121:CDS |
| CAGAGAACAGTTCAACCAGT+GGG | 0.653322 | 4.4:+19776304 | MS.gene35121:CDS |
| ATATCTGATCATCCGCTCAG+TGG | 0.657249 | 4.4:+19771287 | MS.gene35121:CDS |
| TGACTTATAATGGAAAAGAG+AGG | 0.658235 | 4.4:-19772804 | None:intergenic |
| GGCAACAAAAGAACGTCCTG+TGG | 0.659882 | 4.4:+19769032 | MS.gene35121:CDS |
| TACCACAAGAGTTAACTGGA+GGG | 0.660610 | 4.4:+19772725 | MS.gene35121:CDS |
| TAAATGTATTAATCCTGAGG+TGG | 0.668210 | 4.4:+19771406 | MS.gene35121:CDS |
| TTACCACAAGAGTTAACTGG+AGG | 0.668917 | 4.4:+19772724 | MS.gene35121:CDS |
| GATGTGATTGAATGTGCCAA+CGG | 0.669639 | 4.4:+19772888 | MS.gene35121:CDS |
| TGCACGGCACAATTATAATG+TGG | 0.686062 | 4.4:+19776340 | MS.gene35121:CDS |
| GGTTAAGCATTCCTCAGACG+AGG | 0.687251 | 4.4:+19769169 | MS.gene35121:CDS |
| TAGCATGCATCGGATATACA+CGG | 0.687540 | 4.4:+19771988 | MS.gene35121:CDS |
| AACTCACTAGAAGATAAGGA+CGG | 0.690279 | 4.4:-19773569 | None:intergenic |
| CCATGATAGAAGTTTCAATG+AGG | 0.694184 | 4.4:-19773054 | None:intergenic |
| AATTTACAAATTATCCAGAG+AGG | 0.695325 | 4.4:+19772671 | MS.gene35121:CDS |
| CCAGAGAACAGTTCAACCAG+TGG | 0.708997 | 4.4:+19776303 | MS.gene35121:CDS |
| GCCCGAATGTGACCACTGAG+CGG | 0.712193 | 4.4:-19771299 | None:intergenic |
| CTTCCTATAACAATCCTCAG+GGG | 0.761413 | 4.4:-19773009 | None:intergenic |
| TGTGATTGAATGTGCCAACG+GGG | 0.767832 | 4.4:+19772890 | MS.gene35121:CDS |
| CTTCTAGGGAAGACTCCCGG+GGG | 0.792503 | 4.4:+19772648 | MS.gene35121:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19769030 | 19776523 | 19769030 | ID=MS.gene35121 |
| chr4.4 | mRNA | 19769030 | 19776523 | 19769030 | ID=MS.gene35121.t1;Parent=MS.gene35121 |
| chr4.4 | exon | 19769030 | 19769302 | 19769030 | ID=MS.gene35121.t1.exon1;Parent=MS.gene35121.t1 |
| chr4.4 | CDS | 19769030 | 19769302 | 19769030 | ID=cds.MS.gene35121.t1;Parent=MS.gene35121.t1 |
| chr4.4 | exon | 19770280 | 19770369 | 19770280 | ID=MS.gene35121.t1.exon2;Parent=MS.gene35121.t1 |
| chr4.4 | CDS | 19770280 | 19770369 | 19770280 | ID=cds.MS.gene35121.t1;Parent=MS.gene35121.t1 |
| chr4.4 | exon | 19771281 | 19771735 | 19771281 | ID=MS.gene35121.t1.exon3;Parent=MS.gene35121.t1 |
| chr4.4 | CDS | 19771281 | 19771735 | 19771281 | ID=cds.MS.gene35121.t1;Parent=MS.gene35121.t1 |
| chr4.4 | exon | 19771815 | 19772060 | 19771815 | ID=MS.gene35121.t1.exon4;Parent=MS.gene35121.t1 |
| chr4.4 | CDS | 19771815 | 19772060 | 19771815 | ID=cds.MS.gene35121.t1;Parent=MS.gene35121.t1 |
| chr4.4 | exon | 19772644 | 19773584 | 19772644 | ID=MS.gene35121.t1.exon5;Parent=MS.gene35121.t1 |
| chr4.4 | CDS | 19772644 | 19773584 | 19772644 | ID=cds.MS.gene35121.t1;Parent=MS.gene35121.t1 |
| chr4.4 | exon | 19773709 | 19773860 | 19773709 | ID=MS.gene35121.t1.exon6;Parent=MS.gene35121.t1 |
| chr4.4 | CDS | 19773709 | 19773860 | 19773709 | ID=cds.MS.gene35121.t1;Parent=MS.gene35121.t1 |
| chr4.4 | exon | 19773941 | 19774057 | 19773941 | ID=MS.gene35121.t1.exon7;Parent=MS.gene35121.t1 |
| chr4.4 | CDS | 19773941 | 19774057 | 19773941 | ID=cds.MS.gene35121.t1;Parent=MS.gene35121.t1 |
| chr4.4 | exon | 19775114 | 19775251 | 19775114 | ID=MS.gene35121.t1.exon8;Parent=MS.gene35121.t1 |
| chr4.4 | CDS | 19775114 | 19775251 | 19775114 | ID=cds.MS.gene35121.t1;Parent=MS.gene35121.t1 |
| chr4.4 | exon | 19776086 | 19776523 | 19776086 | ID=MS.gene35121.t1.exon9;Parent=MS.gene35121.t1 |
| chr4.4 | CDS | 19776086 | 19776523 | 19776086 | ID=cds.MS.gene35121.t1;Parent=MS.gene35121.t1 |
| Gene Sequence |
| Protein sequence |
