Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41597.t1 | XP_003599279.2 | 97 | 628 | 19 | 0 | 1 | 628 | 1 | 628 | 0.00E+00 | 1201 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41597.t1 | Q9FGH9 | 67.2 | 635 | 177 | 9 | 1 | 620 | 1 | 619 | 1.8e-238 | 826.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41597.t1 | G7IWW7 | 97.0 | 628 | 19 | 0 | 1 | 628 | 1 | 628 | 0.0e+00 | 1201.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene41597 | 0.856696 | 2.70E-62 | -1.69E-46 |
| MS.gene049368 | MS.gene41597 | 0.80359 | 3.24E-49 | -1.69E-46 |
| MS.gene049452 | MS.gene41597 | 0.83437 | 3.12E-56 | -1.69E-46 |
| MS.gene049983 | MS.gene41597 | 0.858808 | 6.39E-63 | -1.69E-46 |
| MS.gene04998 | MS.gene41597 | 0.840396 | 8.92E-58 | -1.69E-46 |
| MS.gene050414 | MS.gene41597 | 0.845224 | 4.64E-59 | -1.69E-46 |
| MS.gene050646 | MS.gene41597 | 0.840656 | 7.62E-58 | -1.69E-46 |
| MS.gene050654 | MS.gene41597 | 0.851931 | 6.44E-61 | -1.69E-46 |
| MS.gene050759 | MS.gene41597 | 0.828341 | 9.49E-55 | -1.69E-46 |
| MS.gene050941 | MS.gene41597 | 0.807332 | 5.32E-50 | -1.69E-46 |
| MS.gene050962 | MS.gene41597 | 0.819967 | 8.79E-53 | -1.69E-46 |
| MS.gene051043 | MS.gene41597 | 0.822014 | 2.97E-53 | -1.69E-46 |
| MS.gene051184 | MS.gene41597 | 0.815245 | 1.02E-51 | -1.69E-46 |
| MS.gene051226 | MS.gene41597 | 0.824709 | 6.97E-54 | -1.69E-46 |
| MS.gene051275 | MS.gene41597 | 0.813897 | 2.03E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene41597 | 0.813896 | 2.03E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene41597 | 0.827048 | 1.94E-54 | -1.69E-46 |
| MS.gene052016 | MS.gene41597 | 0.865383 | 6.15E-65 | -1.69E-46 |
| MS.gene052118 | MS.gene41597 | 0.852224 | 5.31E-61 | -1.69E-46 |
| MS.gene052463 | MS.gene41597 | 0.819361 | 1.21E-52 | -1.69E-46 |
| MS.gene052674 | MS.gene41597 | 0.831956 | 1.24E-55 | -1.69E-46 |
| MS.gene052675 | MS.gene41597 | 0.831001 | 2.14E-55 | -1.69E-46 |
| MS.gene052677 | MS.gene41597 | 0.828216 | 1.02E-54 | -1.69E-46 |
| MS.gene053215 | MS.gene41597 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene41597 | 0.810095 | 1.37E-50 | -1.69E-46 |
| MS.gene05350 | MS.gene41597 | 0.815745 | 7.90E-52 | -1.69E-46 |
| MS.gene053726 | MS.gene41597 | 0.805775 | 1.13E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene41597 | 0.826478 | 2.65E-54 | -1.69E-46 |
| MS.gene054178 | MS.gene41597 | 0.834724 | 2.54E-56 | -1.69E-46 |
| MS.gene05439 | MS.gene41597 | 0.803185 | 3.93E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene41597 | 0.806846 | 6.75E-50 | -1.69E-46 |
| MS.gene054489 | MS.gene41597 | 0.807437 | 5.06E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene41597 | 0.810239 | 1.27E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene41597 | 0.906005 | 2.35E-80 | -1.69E-46 |
| MS.gene054893 | MS.gene41597 | 0.905344 | 4.74E-80 | -1.69E-46 |
| MS.gene055222 | MS.gene41597 | 0.82489 | 6.32E-54 | -1.69E-46 |
| MS.gene055231 | MS.gene41597 | 0.803341 | 3.65E-49 | -1.69E-46 |
| MS.gene05539 | MS.gene41597 | 0.809148 | 2.18E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene41597 | 0.813003 | 3.19E-51 | -1.69E-46 |
| MS.gene05552 | MS.gene41597 | 0.801085 | 1.06E-48 | -1.69E-46 |
| MS.gene055864 | MS.gene41597 | 0.822875 | 1.87E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene41597 | 0.800976 | 1.12E-48 | -1.69E-46 |
| MS.gene05686 | MS.gene41597 | 0.80904 | 2.30E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene41597 | 0.815939 | 7.15E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene41597 | 0.817196 | 3.74E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene41597 | 0.838501 | 2.77E-57 | -1.69E-46 |
| MS.gene057371 | MS.gene41597 | 0.817241 | 3.65E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene41597 | 0.839191 | 1.84E-57 | -1.69E-46 |
| MS.gene058081 | MS.gene41597 | 0.820923 | 5.31E-53 | -1.69E-46 |
| MS.gene058095 | MS.gene41597 | 0.807797 | 4.24E-50 | -1.69E-46 |
| MS.gene058159 | MS.gene41597 | 0.813074 | 3.08E-51 | -1.69E-46 |
| MS.gene058223 | MS.gene41597 | -0.813561 | 2.40E-51 | -1.69E-46 |
| MS.gene058279 | MS.gene41597 | 0.82343 | 1.39E-53 | -1.69E-46 |
| MS.gene058429 | MS.gene41597 | 0.859292 | 4.58E-63 | -1.69E-46 |
| MS.gene059170 | MS.gene41597 | 0.835888 | 1.29E-56 | -1.69E-46 |
| MS.gene05952 | MS.gene41597 | 0.819314 | 1.24E-52 | -1.69E-46 |
| MS.gene05956 | MS.gene41597 | 0.802106 | 6.57E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene41597 | 0.860809 | 1.59E-63 | -1.69E-46 |
| MS.gene060373 | MS.gene41597 | 0.811686 | 6.18E-51 | -1.69E-46 |
| MS.gene060412 | MS.gene41597 | 0.819845 | 9.38E-53 | -1.69E-46 |
| MS.gene060413 | MS.gene41597 | 0.818948 | 1.50E-52 | -1.69E-46 |
| MS.gene060527 | MS.gene41597 | 0.802403 | 5.71E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene41597 | 0.821501 | 3.90E-53 | -1.69E-46 |
| MS.gene060840 | MS.gene41597 | 0.80243 | 5.63E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene41597 | 0.809365 | 1.96E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene41597 | 0.817669 | 2.92E-52 | -1.69E-46 |
| MS.gene060852 | MS.gene41597 | 0.816099 | 6.59E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene41597 | 0.848833 | 4.76E-60 | -1.69E-46 |
| MS.gene060937 | MS.gene41597 | 0.807288 | 5.44E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene41597 | 0.819657 | 1.04E-52 | -1.69E-46 |
| MS.gene06121 | MS.gene41597 | 0.823255 | 1.53E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41597.t1 | MTR_3g031130 | 97.452 | 628 | 16 | 0 | 1 | 628 | 1 | 628 | 0.0 | 1261 |
| MS.gene41597.t1 | MTR_5g073450 | 70.108 | 649 | 166 | 6 | 1 | 628 | 1 | 642 | 0.0 | 891 |
| MS.gene41597.t1 | MTR_5g073460 | 61.883 | 446 | 158 | 4 | 188 | 624 | 255 | 697 | 0.0 | 541 |
| MS.gene41597.t1 | MTR_5g073480 | 50.580 | 431 | 155 | 5 | 184 | 613 | 252 | 625 | 1.95e-130 | 397 |
| MS.gene41597.t1 | MTR_5g073620 | 52.727 | 385 | 150 | 5 | 136 | 518 | 241 | 595 | 1.47e-118 | 378 |
| MS.gene41597.t1 | MTR_5g073620 | 37.209 | 258 | 133 | 4 | 371 | 620 | 833 | 1069 | 3.33e-40 | 158 |
| MS.gene41597.t1 | MTR_4g103540 | 35.160 | 657 | 376 | 13 | 6 | 620 | 33 | 681 | 8.99e-116 | 361 |
| MS.gene41597.t1 | MTR_8g021330 | 35.640 | 578 | 325 | 11 | 89 | 628 | 46 | 614 | 1.85e-115 | 358 |
| MS.gene41597.t1 | MTR_6g033310 | 38.964 | 521 | 283 | 7 | 118 | 620 | 223 | 726 | 5.65e-113 | 355 |
| MS.gene41597.t1 | MTR_7g013770 | 33.582 | 670 | 372 | 14 | 6 | 620 | 16 | 667 | 1.55e-106 | 337 |
| MS.gene41597.t1 | MTR_7g026630 | 37.879 | 528 | 301 | 12 | 118 | 628 | 142 | 659 | 2.50e-105 | 333 |
| MS.gene41597.t1 | MTR_5g074130 | 43.939 | 462 | 221 | 12 | 170 | 617 | 236 | 673 | 3.95e-102 | 327 |
| MS.gene41597.t1 | MTR_1g057560 | 30.964 | 633 | 385 | 9 | 24 | 627 | 24 | 633 | 4.33e-99 | 316 |
| MS.gene41597.t1 | MTR_1g090620 | 31.579 | 646 | 383 | 9 | 22 | 627 | 23 | 649 | 1.44e-98 | 315 |
| MS.gene41597.t1 | MTR_5g073920 | 39.052 | 443 | 236 | 9 | 191 | 623 | 245 | 663 | 2.60e-91 | 298 |
| MS.gene41597.t1 | MTR_1g117090 | 35.340 | 515 | 267 | 9 | 159 | 628 | 184 | 677 | 6.51e-88 | 288 |
| MS.gene41597.t1 | MTR_3g464010 | 39.278 | 443 | 239 | 11 | 186 | 617 | 243 | 666 | 1.48e-86 | 284 |
| MS.gene41597.t1 | MTR_3g025900 | 32.130 | 554 | 345 | 11 | 85 | 623 | 75 | 612 | 9.68e-85 | 278 |
| MS.gene41597.t1 | MTR_2g096230 | 32.727 | 440 | 282 | 5 | 192 | 626 | 158 | 588 | 7.49e-79 | 261 |
| MS.gene41597.t1 | MTR_4g062330 | 31.387 | 548 | 342 | 11 | 86 | 617 | 73 | 602 | 7.00e-77 | 257 |
| MS.gene41597.t1 | MTR_1g067480 | 31.528 | 517 | 323 | 9 | 116 | 617 | 100 | 600 | 8.59e-77 | 256 |
| MS.gene41597.t1 | MTR_5g093530 | 43.251 | 363 | 174 | 7 | 257 | 617 | 238 | 570 | 2.37e-75 | 251 |
| MS.gene41597.t1 | MTR_1g067460 | 29.845 | 516 | 334 | 7 | 116 | 617 | 98 | 599 | 2.44e-70 | 239 |
| MS.gene41597.t1 | MTR_5g073900 | 41.026 | 390 | 176 | 11 | 209 | 589 | 1 | 345 | 6.35e-69 | 228 |
| MS.gene41597.t1 | MTR_5g073770 | 58.163 | 196 | 76 | 3 | 183 | 376 | 192 | 383 | 2.20e-65 | 220 |
| MS.gene41597.t1 | MTR_5g073960 | 48.198 | 222 | 88 | 6 | 154 | 371 | 218 | 416 | 2.88e-48 | 175 |
| MS.gene41597.t1 | MTR_5g073490 | 49.398 | 166 | 62 | 2 | 460 | 618 | 3 | 153 | 1.89e-44 | 155 |
| MS.gene41597.t1 | MTR_5g073820 | 38.644 | 295 | 84 | 6 | 181 | 471 | 228 | 429 | 1.41e-43 | 163 |
| MS.gene41597.t1 | MTR_5g073780 | 37.657 | 239 | 121 | 3 | 389 | 620 | 7 | 224 | 3.54e-43 | 155 |
| MS.gene41597.t1 | MTR_1g009620 | 26.682 | 446 | 308 | 5 | 194 | 628 | 225 | 662 | 9.27e-36 | 143 |
| MS.gene41597.t1 | MTR_1g017910 | 26.573 | 429 | 252 | 10 | 202 | 588 | 251 | 658 | 3.21e-30 | 126 |
| MS.gene41597.t1 | MTR_5g074190 | 32.667 | 300 | 117 | 9 | 329 | 618 | 184 | 408 | 5.18e-27 | 115 |
| MS.gene41597.t1 | MTR_5g073650 | 34.135 | 208 | 92 | 4 | 183 | 389 | 164 | 327 | 6.16e-25 | 106 |
| MS.gene41597.t1 | MTR_5g073810 | 34.135 | 208 | 92 | 4 | 183 | 389 | 266 | 429 | 5.52e-23 | 102 |
| MS.gene41597.t1 | MTR_4g008260 | 23.853 | 436 | 307 | 12 | 194 | 618 | 219 | 640 | 1.35e-22 | 102 |
| MS.gene41597.t1 | MTR_0229s0040 | 32.086 | 187 | 118 | 1 | 451 | 628 | 31 | 217 | 3.26e-22 | 96.7 |
| MS.gene41597.t1 | MTR_3g031110 | 83.333 | 60 | 10 | 0 | 269 | 328 | 17 | 76 | 8.29e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41597.t1 | AT5G58430 | 67.508 | 634 | 177 | 8 | 1 | 620 | 1 | 619 | 0.0 | 837 |
| MS.gene41597.t1 | AT1G07000 | 48.341 | 633 | 278 | 9 | 1 | 620 | 1 | 597 | 0.0 | 580 |
| MS.gene41597.t1 | AT5G50380 | 35.994 | 664 | 360 | 14 | 7 | 620 | 24 | 672 | 1.60e-121 | 376 |
| MS.gene41597.t1 | AT5G13990 | 40.307 | 521 | 287 | 9 | 118 | 626 | 180 | 688 | 2.55e-113 | 355 |
| MS.gene41597.t1 | AT1G72470 | 36.007 | 586 | 318 | 12 | 89 | 628 | 56 | 630 | 1.58e-112 | 351 |
| MS.gene41597.t1 | AT3G14090 | 36.158 | 531 | 309 | 9 | 117 | 619 | 85 | 613 | 4.28e-112 | 349 |
| MS.gene41597.t1 | AT1G54090 | 39.474 | 456 | 253 | 6 | 191 | 628 | 170 | 620 | 2.35e-110 | 345 |
| MS.gene41597.t1 | AT5G13150 | 36.252 | 571 | 310 | 11 | 89 | 628 | 106 | 653 | 1.27e-108 | 341 |
| MS.gene41597.t1 | AT5G03540 | 33.020 | 639 | 373 | 10 | 22 | 627 | 22 | 638 | 2.05e-105 | 332 |
| MS.gene41597.t1 | AT5G52340 | 32.543 | 633 | 373 | 11 | 24 | 627 | 24 | 631 | 2.06e-102 | 325 |
| MS.gene41597.t1 | AT5G03540 | 32.078 | 664 | 372 | 13 | 22 | 627 | 22 | 664 | 9.18e-100 | 318 |
| MS.gene41597.t1 | AT5G03540 | 35.261 | 536 | 310 | 7 | 110 | 627 | 7 | 523 | 2.59e-99 | 313 |
| MS.gene41597.t1 | AT3G29400 | 30.827 | 665 | 395 | 14 | 4 | 623 | 7 | 651 | 1.45e-87 | 286 |
| MS.gene41597.t1 | AT5G52350 | 35.506 | 445 | 262 | 5 | 185 | 619 | 148 | 577 | 1.12e-84 | 276 |
| MS.gene41597.t1 | AT2G39380 | 31.499 | 527 | 326 | 9 | 113 | 620 | 101 | 611 | 3.42e-77 | 258 |
| MS.gene41597.t1 | AT1G07725 | 31.336 | 434 | 274 | 5 | 199 | 623 | 177 | 595 | 1.41e-74 | 251 |
| MS.gene41597.t1 | AT5G59730 | 32.723 | 437 | 275 | 6 | 199 | 620 | 167 | 599 | 1.39e-71 | 243 |
| MS.gene41597.t1 | AT5G59730 | 32.723 | 437 | 275 | 6 | 199 | 620 | 167 | 599 | 1.50e-71 | 243 |
| MS.gene41597.t1 | AT5G61010 | 31.395 | 430 | 283 | 5 | 192 | 618 | 205 | 625 | 2.38e-71 | 243 |
| MS.gene41597.t1 | AT5G61010 | 31.395 | 430 | 283 | 5 | 192 | 618 | 205 | 625 | 2.38e-71 | 243 |
| MS.gene41597.t1 | AT3G09530 | 29.658 | 526 | 337 | 8 | 116 | 623 | 96 | 606 | 4.00e-70 | 239 |
| MS.gene41597.t1 | AT3G55150 | 31.207 | 439 | 276 | 6 | 198 | 620 | 183 | 611 | 1.96e-69 | 237 |
| MS.gene41597.t1 | AT3G09520 | 29.811 | 530 | 326 | 9 | 116 | 621 | 101 | 608 | 1.51e-68 | 235 |
| MS.gene41597.t1 | AT2G28640 | 31.264 | 435 | 280 | 6 | 199 | 623 | 157 | 582 | 1.06e-67 | 232 |
| MS.gene41597.t1 | AT2G28650 | 32.697 | 419 | 263 | 7 | 202 | 617 | 152 | 554 | 6.76e-58 | 204 |
| MS.gene41597.t1 | AT4G31540 | 26.000 | 450 | 306 | 7 | 194 | 628 | 228 | 665 | 1.11e-33 | 137 |
| MS.gene41597.t1 | AT1G51640 | 25.641 | 468 | 294 | 16 | 185 | 618 | 179 | 626 | 2.87e-25 | 111 |
Find 138 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGCTGATCTTTCATTTA+TGG | 0.164125 | 3.1:+49976216 | MS.gene41597:CDS |
| GGATTTGTTGGAACGGAATT+TGG | 0.173055 | 3.1:+49976693 | MS.gene41597:CDS |
| TCGGCTTAACAATTTGTTTC+AGG | 0.178199 | 3.1:+49977170 | MS.gene41597:CDS |
| GGTTCAAATTTCGTGGATTA+TGG | 0.182244 | 3.1:+49976672 | MS.gene41597:CDS |
| CCTGCTTATGGAAGCTTTAT+TGG | 0.189869 | 3.1:+49977072 | MS.gene41597:CDS |
| CATCTTTAGTTTCTCCTTCA+TGG | 0.250229 | 3.1:-49976944 | None:intergenic |
| AAGCTCTTGTTGCCTGCTTA+TGG | 0.263773 | 3.1:+49977060 | MS.gene41597:CDS |
| ATGATTCAAATTCAGGAATT+AGG | 0.267798 | 3.1:-49976354 | None:intergenic |
| AAGACTAAAGACAGTGAATT+AGG | 0.274123 | 3.1:+49976793 | MS.gene41597:CDS |
| GAAAACAATGATTCAAATTC+AGG | 0.283648 | 3.1:-49976361 | None:intergenic |
| TGAGATTGAACGATGGATTA+AGG | 0.289158 | 3.1:+49976108 | MS.gene41597:CDS |
| AGGATGATAGCGGCGGGGTT+TGG | 0.299795 | 3.1:+49975959 | MS.gene41597:CDS |
| CCGGTGAAGGCAGTGGTTCC+TGG | 0.300635 | 3.1:+49976493 | MS.gene41597:CDS |
| AAGAGAGTTTATCGAGATTA+GGG | 0.303056 | 3.1:+49976029 | MS.gene41597:CDS |
| AGTGATAAGTATATCAAGTT+TGG | 0.303408 | 3.1:+49977129 | MS.gene41597:CDS |
| AAAGAAAATCTCTCCGATTC+AGG | 0.315355 | 3.1:+49975467 | MS.gene41597:CDS |
| GGATGATAGCGGCGGGGTTT+GGG | 0.323439 | 3.1:+49975960 | MS.gene41597:CDS |
| AACTTCTTTGATAGTTCATA+TGG | 0.330809 | 3.1:-49976870 | None:intergenic |
| CAGTGAATTAGGAACACTTT+TGG | 0.354775 | 3.1:+49976804 | MS.gene41597:CDS |
| GAAGAGAGTTTATCGAGATT+AGG | 0.357972 | 3.1:+49976028 | MS.gene41597:CDS |
| AGATAATGCACTTTCTTTGA+AGG | 0.361618 | 3.1:+49976603 | MS.gene41597:CDS |
| GTTACAGAAATTGAGTATTT+CGG | 0.364745 | 3.1:+49976051 | MS.gene41597:CDS |
| AGCAGCTCAAGGAAGAAATA+AGG | 0.365241 | 3.1:+49977025 | MS.gene41597:CDS |
| CGGTCATGTTGTGATTTGTT+TGG | 0.367917 | 3.1:-49975400 | None:intergenic |
| TCTAACCTTTCATCATGCTT+AGG | 0.368736 | 3.1:-49976631 | None:intergenic |
| GCACTCTAAACAACCGTTCC+GGG | 0.377408 | 3.1:-49976306 | None:intergenic |
| TTCGTGGATTATGGATTTGT+TGG | 0.379147 | 3.1:+49976681 | MS.gene41597:CDS |
| CGCATGTTTACGGTGGTTGT+AGG | 0.380390 | 3.1:+49975993 | MS.gene41597:CDS |
| GAGGTTGGGTGAAGCGATAA+GGG | 0.381077 | 3.1:+49976432 | MS.gene41597:CDS |
| CTAACCTTTCATCATGCTTA+GGG | 0.383647 | 3.1:-49976630 | None:intergenic |
| CTCGGCGGCGCGTCGTTTAA+CGG | 0.393518 | 3.1:+49975755 | MS.gene41597:CDS |
| AAGGAGTGTTCGCATGTTTA+CGG | 0.398430 | 3.1:+49975983 | MS.gene41597:CDS |
| AGAGGTTGGGTGAAGCGATA+AGG | 0.399880 | 3.1:+49976431 | MS.gene41597:CDS |
| TGAACTATCAAAGAAGTTCA+TGG | 0.402092 | 3.1:+49976875 | MS.gene41597:CDS |
| TTAACGAAGCAATCACGAAT+TGG | 0.405451 | 3.1:+49976407 | MS.gene41597:CDS |
| ATCTTTAGTTTCTCCTTCAT+GGG | 0.408211 | 3.1:-49976943 | None:intergenic |
| GGAAGAGTTTCGGTCGTTGA+TGG | 0.410324 | 3.1:+49975730 | MS.gene41597:CDS |
| AACAATTTGTTTCAGGGAAG+TGG | 0.413392 | 3.1:+49977177 | MS.gene41597:CDS |
| TTCATCACATAACGAGTAAT+CGG | 0.414939 | 3.1:-49976529 | None:intergenic |
| TTCGCTGATGCGGTGGCGAT+TGG | 0.423650 | 3.1:+49976274 | MS.gene41597:CDS |
| AGTTCATGGAACAAGTTGTT+GGG | 0.426094 | 3.1:+49976889 | MS.gene41597:CDS |
| CGTAAATCGTTCACCGTCGC+TGG | 0.434219 | 3.1:-49975923 | None:intergenic |
| AGCACTCTAAACAACCGTTC+CGG | 0.449631 | 3.1:-49976307 | None:intergenic |
| TATGGAGGTCTGCCGTGGTT+CGG | 0.450780 | 3.1:+49976234 | MS.gene41597:CDS |
| CGGCTTAACAATTTGTTTCA+GGG | 0.457027 | 3.1:+49977171 | MS.gene41597:CDS |
| AGCAGATGACGAAGATAAAC+CGG | 0.457757 | 3.1:-49976194 | None:intergenic |
| ATCATTCCGTGGACCTGAAT+CGG | 0.460436 | 3.1:-49975480 | None:intergenic |
| AAGGCAGTGGTTCCTGGCGG+AGG | 0.461078 | 3.1:+49976499 | MS.gene41597:CDS |
| TCAACAACCGCTTTCGCCAC+GGG | 0.472496 | 3.1:-49975872 | None:intergenic |
| CCAATAAAGCTTCCATAAGC+AGG | 0.477943 | 3.1:-49977072 | None:intergenic |
| AAGTTCATGGAACAAGTTGT+TGG | 0.482190 | 3.1:+49976888 | MS.gene41597:CDS |
| ATCACGAATTGGAAGAGGTT+GGG | 0.489481 | 3.1:+49976418 | MS.gene41597:CDS |
| CCAGGAACCACTGCCTTCAC+CGG | 0.491457 | 3.1:-49976493 | None:intergenic |
| CAAGTTGTTGGGGTTTCTGA+AGG | 0.492149 | 3.1:+49976900 | MS.gene41597:CDS |
| GTTTCTGAAGGTGGAGACAT+TGG | 0.492849 | 3.1:+49976912 | MS.gene41597:CDS |
| TTGTTGCGATTATCGAAGAT+TGG | 0.494190 | 3.1:+49975624 | MS.gene41597:CDS |
| TCACTATTCTTAGCAAGCTC+CGG | 0.496214 | 3.1:-49977111 | None:intergenic |
| TTCAAGTGCGGTGTAGCGTA+TGG | 0.502412 | 3.1:-49975504 | None:intergenic |
| GAATTTGATTAGTCGTGATC+CGG | 0.504195 | 3.1:+49976474 | MS.gene41597:CDS |
| ATGTTTACGGTGGTTGTAGG+AGG | 0.505725 | 3.1:+49975996 | MS.gene41597:CDS |
| CAGAATCTTCAGAGCAACAT+TGG | 0.506198 | 3.1:-49976134 | None:intergenic |
| CTTATGGAAGCTTTATTGGA+AGG | 0.506562 | 3.1:+49977076 | MS.gene41597:CDS |
| ATCAACAACCGCTTTCGCCA+CGG | 0.510251 | 3.1:-49975873 | None:intergenic |
| TCACAAAGACGCCGTTCACT+CGG | 0.518209 | 3.1:-49976160 | None:intergenic |
| GTTGTTGGGGTTTCTGAAGG+TGG | 0.519469 | 3.1:+49976903 | MS.gene41597:CDS |
| ACTTAATTTCGCTGATGCGG+TGG | 0.521939 | 3.1:+49976267 | MS.gene41597:CDS |
| TGCTGATCTTTCATTTATGG+AGG | 0.526214 | 3.1:+49976219 | MS.gene41597:CDS |
| TTCGTGCGGAGGAAGAGTTT+CGG | 0.528063 | 3.1:+49975720 | MS.gene41597:CDS |
| GCGAAAAGGATGATAGCGGC+GGG | 0.535031 | 3.1:+49975953 | MS.gene41597:CDS |
| ACAAGCTATGTTTCGTGCGG+AGG | 0.539091 | 3.1:+49975709 | MS.gene41597:CDS |
| TCGTGATCCGGTGAAGGCAG+TGG | 0.540702 | 3.1:+49976486 | MS.gene41597:CDS |
| AATTTGTTTCAGGGAAGTGG+TGG | 0.545912 | 3.1:+49977180 | MS.gene41597:CDS |
| AATCACGAATTGGAAGAGGT+TGG | 0.552344 | 3.1:+49976417 | MS.gene41597:CDS |
| TTTCGGTCGTTGATGGAACT+CGG | 0.552510 | 3.1:+49975737 | MS.gene41597:CDS |
| CAAATCTTCTCAAATTTCGA+CGG | 0.553855 | 3.1:+49975434 | MS.gene41597:CDS |
| CGGAAGTTCATAAGATGCAA+TGG | 0.554271 | 3.1:+49976071 | MS.gene41597:CDS |
| TAAGTATATCAAGTTTGGAA+TGG | 0.555489 | 3.1:+49977134 | MS.gene41597:CDS |
| AGAGGAAATTGACGGTGATG+AGG | 0.555909 | 3.1:+49975841 | MS.gene41597:CDS |
| GATGAAGAAGAGGAAATTGA+CGG | 0.557702 | 3.1:+49975833 | MS.gene41597:CDS |
| ATCTCTCCGATTCAGGTCCA+CGG | 0.558182 | 3.1:+49975474 | MS.gene41597:CDS |
| CAGGGAAGTGGTGGATCGAA+TGG | 0.559457 | 3.1:+49977189 | MS.gene41597:CDS |
| ATTTACGTGAAATTGCGAAA+AGG | 0.559702 | 3.1:+49975939 | MS.gene41597:CDS |
| GTTACTTAATTTCGCTGATG+CGG | 0.563092 | 3.1:+49976264 | MS.gene41597:CDS |
| ACTACCTTCGCGCTGCATGT+AGG | 0.564108 | 3.1:+49976551 | MS.gene41597:CDS |
| GATTAGTCGTGATCCGGTGA+AGG | 0.565011 | 3.1:+49976480 | MS.gene41597:CDS |
| GGCGATTGGTAGTAGATCCC+CGG | 0.570140 | 3.1:+49976288 | MS.gene41597:CDS |
| ATCGGATGAAGACCTCCGCC+AGG | 0.570752 | 3.1:-49976511 | None:intergenic |
| TGTTTACGGTGGTTGTAGGA+GGG | 0.571941 | 3.1:+49975997 | MS.gene41597:CDS |
| TCATTTATGGAGGTCTGCCG+TGG | 0.576396 | 3.1:+49976229 | MS.gene41597:CDS |
| GAATGGAGGACATTGAAGCT+CGG | 0.577308 | 3.1:+49977151 | MS.gene41597:CDS |
| GATAGCGGCGGGGTTTGGGA+AGG | 0.580112 | 3.1:+49975964 | MS.gene41597:CDS |
| AACTCAGCTGAAGCCGCCGT+GGG | 0.580559 | 3.1:-49975581 | None:intergenic |
| TTTGATTCCCGTGGCGAAAG+CGG | 0.581481 | 3.1:+49975865 | MS.gene41597:CDS |
| AGATTCTGTTTCCGAGTGAA+CGG | 0.582144 | 3.1:+49976149 | MS.gene41597:CDS |
| TGTGGATGAAGATGAAGAAG+AGG | 0.584684 | 3.1:+49975823 | MS.gene41597:CDS |
| AAATCGTTCACCGTCGCTGG+AGG | 0.587338 | 3.1:-49975920 | None:intergenic |
| AAGCAATCACGAATTGGAAG+AGG | 0.588929 | 3.1:+49976413 | MS.gene41597:CDS |
| GATTTCTCGTCATCTCTCCT+CGG | 0.589735 | 3.1:+49975553 | MS.gene41597:CDS |
| GGATTATGGATTTGTTGGAA+CGG | 0.590121 | 3.1:+49976686 | MS.gene41597:CDS |
| TGTCTTTGATGAGCAGCTCA+AGG | 0.590338 | 3.1:+49977014 | MS.gene41597:CDS |
| TTATGAATCAAACGACGTTG+TGG | 0.591244 | 3.1:+49975805 | MS.gene41597:CDS |
| AAACTCAGCTGAAGCCGCCG+TGG | 0.596875 | 3.1:-49975582 | None:intergenic |
| GTATATCAAGTTTGGAATGG+AGG | 0.596974 | 3.1:+49977137 | MS.gene41597:CDS |
| GAAGATTTGAAGAATATCAT+CGG | 0.609392 | 3.1:-49975420 | None:intergenic |
| CTTTCCGATGATAAAACCGT+CGG | 0.613696 | 3.1:+49975653 | MS.gene41597:CDS |
| GTTCATGGAACAAGTTGTTG+GGG | 0.614676 | 3.1:+49976890 | MS.gene41597:CDS |
| TCGACCTACATGCAGCGCGA+AGG | 0.616717 | 3.1:-49976555 | None:intergenic |
| TGATGAGGATTTGATTCCCG+TGG | 0.620676 | 3.1:+49975856 | MS.gene41597:CDS |
| TAGCGTATGGTATCATTCCG+TGG | 0.625647 | 3.1:-49975491 | None:intergenic |
| CACTCTAAACAACCGTTCCG+GGG | 0.627665 | 3.1:-49976305 | None:intergenic |
| ACGTAGAAGACACGCGCCGA+CGG | 0.632061 | 3.1:-49975669 | None:intergenic |
| GTTGAGAGTTTGTTCAAGTG+CGG | 0.632373 | 3.1:-49975516 | None:intergenic |
| AATCGCAACAAGCTCATCAA+CGG | 0.634330 | 3.1:-49975612 | None:intergenic |
| GAGTGTTCGCATGTTTACGG+TGG | 0.639374 | 3.1:+49975986 | MS.gene41597:CDS |
| CGAATGGTAGCCGTAAGTGA+AGG | 0.641673 | 3.1:+49977205 | MS.gene41597:CDS |
| ATTGGCTGCGAAACCCATGA+AGG | 0.642590 | 3.1:+49976930 | MS.gene41597:CDS |
| ATTACCCTAAGCATGATGAA+AGG | 0.646811 | 3.1:+49976626 | MS.gene41597:CDS |
| TCAACAAGCTATGTTTCGTG+CGG | 0.648527 | 3.1:+49975706 | MS.gene41597:CDS |
| AGGTTGGGTGAAGCGATAAG+GGG | 0.658361 | 3.1:+49976433 | MS.gene41597:CDS |
| TGAAGAGAAATTACTCGCTG+TGG | 0.662466 | 3.1:+49975352 | MS.gene41597:CDS |
| CGCAACAAGCTCATCAACGG+CGG | 0.662849 | 3.1:-49975609 | None:intergenic |
| TATGTAGGGTTCAATCTCAG+TGG | 0.664137 | 3.1:+49976989 | MS.gene41597:CDS |
| GTAACTGAATTGCCGAACCA+CGG | 0.664529 | 3.1:-49976246 | None:intergenic |
| TCTCTCCTCGGAGATTCCCA+CGG | 0.668722 | 3.1:+49975565 | MS.gene41597:CDS |
| AGAGATGACGAGAAATCTGA+CGG | 0.670142 | 3.1:-49975547 | None:intergenic |
| TGCGAAAAGGATGATAGCGG+CGG | 0.671383 | 3.1:+49975952 | MS.gene41597:CDS |
| CGAAAAGGATGATAGCGGCG+GGG | 0.674133 | 3.1:+49975954 | MS.gene41597:CDS |
| CGACGCGCTTCCTCCAGCGA+CGG | 0.675324 | 3.1:+49975910 | MS.gene41597:CDS |
| GTGAAGGCAGTGGTTCCTGG+CGG | 0.679578 | 3.1:+49976496 | MS.gene41597:CDS |
| AACGGCGAGATGAATCTGAA+CGG | 0.695148 | 3.1:+49975773 | MS.gene41597:CDS |
| TTGGTAGTAGATCCCCGGAA+CGG | 0.697839 | 3.1:+49976293 | MS.gene41597:CDS |
| TTGAAGATGAGATTGAACGA+TGG | 0.701231 | 3.1:+49976101 | MS.gene41597:CDS |
| GAAAACACAGTACAAAAGTG+CGG | 0.701354 | 3.1:+49976842 | MS.gene41597:CDS |
| AGCCGCCGTGGGAATCTCCG+AGG | 0.705209 | 3.1:-49975570 | None:intergenic |
| AGCGGTTGTTGATTATAACG+TGG | 0.708335 | 3.1:+49975883 | MS.gene41597:CDS |
| CGGTCGTTGATGGAACTCGG+CGG | 0.717843 | 3.1:+49975740 | MS.gene41597:CDS |
| AATTGCGAAAAGGATGATAG+CGG | 0.737806 | 3.1:+49975949 | MS.gene41597:CDS |
| CTCCTCGGAGATTCCCACGG+CGG | 0.763053 | 3.1:+49975568 | MS.gene41597:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGTGATAAGTATATCAAGTT+TGG | + | chr3.1:49977129-49977148 | MS.gene41597:CDS | 25.0% |
| ! | ATGATTCAAATTCAGGAATT+AGG | - | chr3.1:49976357-49976376 | None:intergenic | 25.0% |
| ! | GAAAACAATGATTCAAATTC+AGG | - | chr3.1:49976364-49976383 | None:intergenic | 25.0% |
| ! | GAAGATTTGAAGAATATCAT+CGG | - | chr3.1:49975423-49975442 | None:intergenic | 25.0% |
| ! | GTTACAGAAATTGAGTATTT+CGG | + | chr3.1:49976051-49976070 | MS.gene41597:CDS | 25.0% |
| ! | TAAGTATATCAAGTTTGGAA+TGG | + | chr3.1:49977134-49977153 | MS.gene41597:CDS | 25.0% |
| !! | AACTTCTTTGATAGTTCATA+TGG | - | chr3.1:49976873-49976892 | None:intergenic | 25.0% |
| !! | AGAATCAAATTCATCGTTTT+CGG | + | chr3.1:49976651-49976670 | MS.gene41597:CDS | 25.0% |
| !!! | CTGTTTTTATGATGAACAAT+GGG | + | chr3.1:49976755-49976774 | MS.gene41597:CDS | 25.0% |
| !!! | TCTGTTTTTATGATGAACAA+TGG | + | chr3.1:49976754-49976773 | MS.gene41597:CDS | 25.0% |
| AAGACTAAAGACAGTGAATT+AGG | + | chr3.1:49976793-49976812 | MS.gene41597:CDS | 30.0% | |
| AAGAGAGTTTATCGAGATTA+GGG | + | chr3.1:49976029-49976048 | MS.gene41597:CDS | 30.0% | |
| AGATAATGCACTTTCTTTGA+AGG | + | chr3.1:49976603-49976622 | MS.gene41597:CDS | 30.0% | |
| ATAAAAACAGAACACAAAGC+AGG | - | chr3.1:49976745-49976764 | None:intergenic | 30.0% | |
| ATTTACGTGAAATTGCGAAA+AGG | + | chr3.1:49975939-49975958 | MS.gene41597:CDS | 30.0% | |
| CAAATCTTCTCAAATTTCGA+CGG | + | chr3.1:49975434-49975453 | MS.gene41597:CDS | 30.0% | |
| TAAAAACAGAACACAAAGCA+GGG | - | chr3.1:49976744-49976763 | None:intergenic | 30.0% | |
| TGAACTATCAAAGAAGTTCA+TGG | + | chr3.1:49976875-49976894 | MS.gene41597:CDS | 30.0% | |
| TTCATCACATAACGAGTAAT+CGG | - | chr3.1:49976532-49976551 | None:intergenic | 30.0% | |
| ! | AGTGAATTAGGAACACTTTT+GGG | + | chr3.1:49976805-49976824 | MS.gene41597:CDS | 30.0% |
| ! | ATCTTTAGTTTCTCCTTCAT+GGG | - | chr3.1:49976946-49976965 | None:intergenic | 30.0% |
| ! | TGGAAGGTTTCAAATTTTAC+CGG | + | chr3.1:49977092-49977111 | MS.gene41597:CDS | 30.0% |
| !! | GCATTTTGAAGAGATATGTA+GGG | + | chr3.1:49976975-49976994 | MS.gene41597:CDS | 30.0% |
| !! | TGCATTTTGAAGAGATATGT+AGG | + | chr3.1:49976974-49976993 | MS.gene41597:CDS | 30.0% |
| AAAGAAAATCTCTCCGATTC+AGG | + | chr3.1:49975467-49975486 | MS.gene41597:CDS | 35.0% | |
| AAGTTCATGGAACAAGTTGT+TGG | + | chr3.1:49976888-49976907 | MS.gene41597:CDS | 35.0% | |
| AATTGCGAAAAGGATGATAG+CGG | + | chr3.1:49975949-49975968 | MS.gene41597:CDS | 35.0% | |
| AGTTCATGGAACAAGTTGTT+GGG | + | chr3.1:49976889-49976908 | MS.gene41597:CDS | 35.0% | |
| ATTACCCTAAGCATGATGAA+AGG | + | chr3.1:49976626-49976645 | MS.gene41597:CDS | 35.0% | |
| CTAACCTTTCATCATGCTTA+GGG | - | chr3.1:49976633-49976652 | None:intergenic | 35.0% | |
| GAAAACACAGTACAAAAGTG+CGG | + | chr3.1:49976842-49976861 | MS.gene41597:CDS | 35.0% | |
| GAAGAGAGTTTATCGAGATT+AGG | + | chr3.1:49976028-49976047 | MS.gene41597:CDS | 35.0% | |
| GATGAAGAAGAGGAAATTGA+CGG | + | chr3.1:49975833-49975852 | MS.gene41597:CDS | 35.0% | |
| GTTACTTAATTTCGCTGATG+CGG | + | chr3.1:49976264-49976283 | MS.gene41597:CDS | 35.0% | |
| TCTAACCTTTCATCATGCTT+AGG | - | chr3.1:49976634-49976653 | None:intergenic | 35.0% | |
| TGCTGATCTTTCATTTATGG+AGG | + | chr3.1:49976219-49976238 | MS.gene41597:CDS | 35.0% | |
| TGCTGCTGATCTTTCATTTA+TGG | + | chr3.1:49976216-49976235 | MS.gene41597:CDS | 35.0% | |
| TTAACGAAGCAATCACGAAT+TGG | + | chr3.1:49976407-49976426 | MS.gene41597:CDS | 35.0% | |
| TTATGAATCAAACGACGTTG+TGG | + | chr3.1:49975805-49975824 | MS.gene41597:CDS | 35.0% | |
| TTGAAGATGAGATTGAACGA+TGG | + | chr3.1:49976101-49976120 | MS.gene41597:CDS | 35.0% | |
| TTGTTGCGATTATCGAAGAT+TGG | + | chr3.1:49975624-49975643 | MS.gene41597:CDS | 35.0% | |
| ! | AACAATTTGTTTCAGGGAAG+TGG | + | chr3.1:49977177-49977196 | MS.gene41597:CDS | 35.0% |
| ! | AAGGGGAACTTTTATGGAAT+TGG | + | chr3.1:49976450-49976469 | MS.gene41597:CDS | 35.0% |
| ! | CAGTGAATTAGGAACACTTT+TGG | + | chr3.1:49976804-49976823 | MS.gene41597:CDS | 35.0% |
| ! | CATCTTTAGTTTCTCCTTCA+TGG | - | chr3.1:49976947-49976966 | None:intergenic | 35.0% |
| ! | CGGCTTAACAATTTGTTTCA+GGG | + | chr3.1:49977171-49977190 | MS.gene41597:CDS | 35.0% |
| ! | GAATTTGATTAGTCGTGATC+CGG | + | chr3.1:49976474-49976493 | MS.gene41597:CDS | 35.0% |
| ! | GGTTCAAATTTCGTGGATTA+TGG | + | chr3.1:49976672-49976691 | MS.gene41597:CDS | 35.0% |
| ! | GTATATCAAGTTTGGAATGG+AGG | + | chr3.1:49977137-49977156 | MS.gene41597:CDS | 35.0% |
| ! | TCGGCTTAACAATTTGTTTC+AGG | + | chr3.1:49977170-49977189 | MS.gene41597:CDS | 35.0% |
| ! | TTCGTGGATTATGGATTTGT+TGG | + | chr3.1:49976681-49976700 | MS.gene41597:CDS | 35.0% |
| !! | CTTATGGAAGCTTTATTGGA+AGG | + | chr3.1:49977076-49977095 | MS.gene41597:CDS | 35.0% |
| !! | GGATTATGGATTTGTTGGAA+CGG | + | chr3.1:49976686-49976705 | MS.gene41597:CDS | 35.0% |
| !! | TGAGATTGAACGATGGATTA+AGG | + | chr3.1:49976108-49976127 | MS.gene41597:CDS | 35.0% |
| AAGCAATCACGAATTGGAAG+AGG | + | chr3.1:49976413-49976432 | MS.gene41597:CDS | 40.0% | |
| AATCACGAATTGGAAGAGGT+TGG | + | chr3.1:49976417-49976436 | MS.gene41597:CDS | 40.0% | |
| AATCGCAACAAGCTCATCAA+CGG | - | chr3.1:49975615-49975634 | None:intergenic | 40.0% | |
| AGAGATGACGAGAAATCTGA+CGG | - | chr3.1:49975550-49975569 | None:intergenic | 40.0% | |
| AGATTCTGTTTCCGAGTGAA+CGG | + | chr3.1:49976149-49976168 | MS.gene41597:CDS | 40.0% | |
| AGCAGATGACGAAGATAAAC+CGG | - | chr3.1:49976197-49976216 | None:intergenic | 40.0% | |
| AGCAGCTCAAGGAAGAAATA+AGG | + | chr3.1:49977025-49977044 | MS.gene41597:CDS | 40.0% | |
| ATCACGAATTGGAAGAGGTT+GGG | + | chr3.1:49976418-49976437 | MS.gene41597:CDS | 40.0% | |
| CAGAATCTTCAGAGCAACAT+TGG | - | chr3.1:49976137-49976156 | None:intergenic | 40.0% | |
| CCAATAAAGCTTCCATAAGC+AGG | - | chr3.1:49977075-49977094 | None:intergenic | 40.0% | |
| CGGAAGTTCATAAGATGCAA+TGG | + | chr3.1:49976071-49976090 | MS.gene41597:CDS | 40.0% | |
| CTTTCCGATGATAAAACCGT+CGG | + | chr3.1:49975653-49975672 | MS.gene41597:CDS | 40.0% | |
| GTTCATGGAACAAGTTGTTG+GGG | + | chr3.1:49976890-49976909 | MS.gene41597:CDS | 40.0% | |
| TATGTAGGGTTCAATCTCAG+TGG | + | chr3.1:49976989-49977008 | MS.gene41597:CDS | 40.0% | |
| TCAACAAGCTATGTTTCGTG+CGG | + | chr3.1:49975706-49975725 | MS.gene41597:CDS | 40.0% | |
| TCACTATTCTTAGCAAGCTC+CGG | - | chr3.1:49977114-49977133 | None:intergenic | 40.0% | |
| TGAAGAGAAATTACTCGCTG+TGG | + | chr3.1:49975352-49975371 | MS.gene41597:CDS | 40.0% | |
| TGTGGATGAAGATGAAGAAG+AGG | + | chr3.1:49975823-49975842 | MS.gene41597:CDS | 40.0% | |
| ! | AATTTGTTTCAGGGAAGTGG+TGG | + | chr3.1:49977180-49977199 | MS.gene41597:CDS | 40.0% |
| ! | AGCGATAAGGGGAACTTTTA+TGG | + | chr3.1:49976444-49976463 | MS.gene41597:CDS | 40.0% |
| ! | AGCGGTTGTTGATTATAACG+TGG | + | chr3.1:49975883-49975902 | MS.gene41597:CDS | 40.0% |
| ! | CCTGCTTATGGAAGCTTTAT+TGG | + | chr3.1:49977072-49977091 | MS.gene41597:CDS | 40.0% |
| ! | CGTTTTCGGTTCAAATTTCG+TGG | + | chr3.1:49976665-49976684 | MS.gene41597:CDS | 40.0% |
| ! | CTTTGTGATCGTGTTTTCTC+CGG | + | chr3.1:49976175-49976194 | MS.gene41597:CDS | 40.0% |
| ! | GTTGAGAGTTTGTTCAAGTG+CGG | - | chr3.1:49975519-49975538 | None:intergenic | 40.0% |
| !! | AAGGAGTGTTCGCATGTTTA+CGG | + | chr3.1:49975983-49976002 | MS.gene41597:CDS | 40.0% |
| !! | ACGGTTTTATCATCGGAAAG+AGG | - | chr3.1:49975653-49975672 | None:intergenic | 40.0% |
| !! | CGGTCATGTTGTGATTTGTT+TGG | - | chr3.1:49975403-49975422 | None:intergenic | 40.0% |
| !! | GAACACTTTTGGGTGATGAT+TGG | + | chr3.1:49976815-49976834 | MS.gene41597:CDS | 40.0% |
| !! | GGATTTGTTGGAACGGAATT+TGG | + | chr3.1:49976693-49976712 | MS.gene41597:CDS | 40.0% |
| AACGGCGAGATGAATCTGAA+CGG | + | chr3.1:49975773-49975792 | MS.gene41597:CDS | 45.0% | |
| AAGCTCTTGTTGCCTGCTTA+TGG | + | chr3.1:49977060-49977079 | MS.gene41597:CDS | 45.0% | |
| ACTTAATTTCGCTGATGCGG+TGG | + | chr3.1:49976267-49976286 | MS.gene41597:CDS | 45.0% | |
| AGAGGAAATTGACGGTGATG+AGG | + | chr3.1:49975841-49975860 | MS.gene41597:CDS | 45.0% | |
| AGCACTCTAAACAACCGTTC+CGG | - | chr3.1:49976310-49976329 | None:intergenic | 45.0% | |
| ATCATTCCGTGGACCTGAAT+CGG | - | chr3.1:49975483-49975502 | None:intergenic | 45.0% | |
| ATGTTTACGGTGGTTGTAGG+AGG | + | chr3.1:49975996-49976015 | MS.gene41597:CDS | 45.0% | |
| CAAGTTGTTGGGGTTTCTGA+AGG | + | chr3.1:49976900-49976919 | MS.gene41597:CDS | 45.0% | |
| CGCCACATAGCAAAAACACT+AGG | + | chr3.1:49975377-49975396 | MS.gene41597:CDS | 45.0% | |
| GAATGGAGGACATTGAAGCT+CGG | + | chr3.1:49977151-49977170 | MS.gene41597:CDS | 45.0% | |
| GATTTCTCGTCATCTCTCCT+CGG | + | chr3.1:49975553-49975572 | MS.gene41597:CDS | 45.0% | |
| GTAACTGAATTGCCGAACCA+CGG | - | chr3.1:49976249-49976268 | None:intergenic | 45.0% | |
| TAGCGTATGGTATCATTCCG+TGG | - | chr3.1:49975494-49975513 | None:intergenic | 45.0% | |
| TGATGAGGATTTGATTCCCG+TGG | + | chr3.1:49975856-49975875 | MS.gene41597:CDS | 45.0% | |
| TGTCTTTGATGAGCAGCTCA+AGG | + | chr3.1:49977014-49977033 | MS.gene41597:CDS | 45.0% | |
| TGTTTACGGTGGTTGTAGGA+GGG | + | chr3.1:49975997-49976016 | MS.gene41597:CDS | 45.0% | |
| ! | GTTTCTGAAGGTGGAGACAT+TGG | + | chr3.1:49976912-49976931 | MS.gene41597:CDS | 45.0% |
| ! | TGGTTGTAGGAGGGAGTTTT+TGG | + | chr3.1:49976006-49976025 | MS.gene41597:CDS | 45.0% |
| ! | TTTCGGTCGTTGATGGAACT+CGG | + | chr3.1:49975737-49975756 | MS.gene41597:CDS | 45.0% |
| !! | GGCCTAGTGTTTTTGCTATG+TGG | - | chr3.1:49975382-49975401 | None:intergenic | 45.0% |
| ACAAGCTATGTTTCGTGCGG+AGG | + | chr3.1:49975709-49975728 | MS.gene41597:CDS | 50.0% | |
| AGAGGTTGGGTGAAGCGATA+AGG | + | chr3.1:49976431-49976450 | MS.gene41597:CDS | 50.0% | |
| AGGTTGGGTGAAGCGATAAG+GGG | + | chr3.1:49976433-49976452 | MS.gene41597:CDS | 50.0% | |
| ATCAACAACCGCTTTCGCCA+CGG | - | chr3.1:49975876-49975895 | None:intergenic | 50.0% | |
| ATCTCTCCGATTCAGGTCCA+CGG | + | chr3.1:49975474-49975493 | MS.gene41597:CDS | 50.0% | |
| ATTGGCTGCGAAACCCATGA+AGG | + | chr3.1:49976930-49976949 | MS.gene41597:CDS | 50.0% | |
| CACTCTAAACAACCGTTCCG+GGG | - | chr3.1:49976308-49976327 | None:intergenic | 50.0% | |
| CGCATGTTTACGGTGGTTGT+AGG | + | chr3.1:49975993-49976012 | MS.gene41597:CDS | 50.0% | |
| GAGGTTGGGTGAAGCGATAA+GGG | + | chr3.1:49976432-49976451 | MS.gene41597:CDS | 50.0% | |
| GAGTGTTCGCATGTTTACGG+TGG | + | chr3.1:49975986-49976005 | MS.gene41597:CDS | 50.0% | |
| GCACTCTAAACAACCGTTCC+GGG | - | chr3.1:49976309-49976328 | None:intergenic | 50.0% | |
| GGAAGAGTTTCGGTCGTTGA+TGG | + | chr3.1:49975730-49975749 | MS.gene41597:CDS | 50.0% | |
| TCACAAAGACGCCGTTCACT+CGG | - | chr3.1:49976163-49976182 | None:intergenic | 50.0% | |
| TCATTTATGGAGGTCTGCCG+TGG | + | chr3.1:49976229-49976248 | MS.gene41597:CDS | 50.0% | |
| TTCAAGTGCGGTGTAGCGTA+TGG | - | chr3.1:49975507-49975526 | None:intergenic | 50.0% | |
| TTCGTGCGGAGGAAGAGTTT+CGG | + | chr3.1:49975720-49975739 | MS.gene41597:CDS | 50.0% | |
| TTTGATTCCCGTGGCGAAAG+CGG | + | chr3.1:49975865-49975884 | MS.gene41597:CDS | 50.0% | |
| ! | GATTAGTCGTGATCCGGTGA+AGG | + | chr3.1:49976480-49976499 | MS.gene41597:CDS | 50.0% |
| ! | GTTGTTGGGGTTTCTGAAGG+TGG | + | chr3.1:49976903-49976922 | MS.gene41597:CDS | 50.0% |
| ! | TTGGTAGTAGATCCCCGGAA+CGG | + | chr3.1:49976293-49976312 | MS.gene41597:CDS | 50.0% |
| !! | TGCGAAAAGGATGATAGCGG+CGG | + | chr3.1:49975952-49975971 | MS.gene41597:CDS | 50.0% |
| AAATCGTTCACCGTCGCTGG+AGG | - | chr3.1:49975923-49975942 | None:intergenic | 55.0% | |
| ACTACCTTCGCGCTGCATGT+AGG | + | chr3.1:49976551-49976570 | MS.gene41597:CDS | 55.0% | |
| CGCAACAAGCTCATCAACGG+CGG | - | chr3.1:49975612-49975631 | None:intergenic | 55.0% | |
| CGTAAATCGTTCACCGTCGC+TGG | - | chr3.1:49975926-49975945 | None:intergenic | 55.0% | |
| TATGGAGGTCTGCCGTGGTT+CGG | + | chr3.1:49976234-49976253 | MS.gene41597:CDS | 55.0% | |
| TCAACAACCGCTTTCGCCAC+GGG | - | chr3.1:49975875-49975894 | None:intergenic | 55.0% | |
| TCTCTCCTCGGAGATTCCCA+CGG | + | chr3.1:49975565-49975584 | MS.gene41597:CDS | 55.0% | |
| ! | GGCGATTGGTAGTAGATCCC+CGG | + | chr3.1:49976288-49976307 | MS.gene41597:CDS | 55.0% |
| !! | CAGGGAAGTGGTGGATCGAA+TGG | + | chr3.1:49977189-49977208 | MS.gene41597:CDS | 55.0% |
| !! | CGAAAAGGATGATAGCGGCG+GGG | + | chr3.1:49975954-49975973 | MS.gene41597:CDS | 55.0% |
| !! | CGCGCCGACGGTTTTATCAT+CGG | - | chr3.1:49975660-49975679 | None:intergenic | 55.0% |
| !! | GCGAAAAGGATGATAGCGGC+GGG | + | chr3.1:49975953-49975972 | MS.gene41597:CDS | 55.0% |
| AAACTCAGCTGAAGCCGCCG+TGG | - | chr3.1:49975585-49975604 | None:intergenic | 60.0% | |
| AACTCAGCTGAAGCCGCCGT+GGG | - | chr3.1:49975584-49975603 | None:intergenic | 60.0% | |
| ACGTAGAAGACACGCGCCGA+CGG | - | chr3.1:49975672-49975691 | None:intergenic | 60.0% | |
| ATCGGATGAAGACCTCCGCC+AGG | - | chr3.1:49976514-49976533 | None:intergenic | 60.0% | |
| CCAGGAACCACTGCCTTCAC+CGG | - | chr3.1:49976496-49976515 | None:intergenic | 60.0% | |
| GTGAAGGCAGTGGTTCCTGG+CGG | + | chr3.1:49976496-49976515 | MS.gene41597:CDS | 60.0% | |
| TCGACCTACATGCAGCGCGA+AGG | - | chr3.1:49976558-49976577 | None:intergenic | 60.0% | |
| TCGTGATCCGGTGAAGGCAG+TGG | + | chr3.1:49976486-49976505 | MS.gene41597:CDS | 60.0% | |
| TTCGCTGATGCGGTGGCGAT+TGG | + | chr3.1:49976274-49976293 | MS.gene41597:CDS | 60.0% | |
| ! | CGGTCGTTGATGGAACTCGG+CGG | + | chr3.1:49975740-49975759 | MS.gene41597:CDS | 60.0% |
| !! | AGGATGATAGCGGCGGGGTT+TGG | + | chr3.1:49975959-49975978 | MS.gene41597:CDS | 60.0% |
| !! | GGATGATAGCGGCGGGGTTT+GGG | + | chr3.1:49975960-49975979 | MS.gene41597:CDS | 60.0% |
| AAGGCAGTGGTTCCTGGCGG+AGG | + | chr3.1:49976499-49976518 | MS.gene41597:CDS | 65.0% | |
| CCGGTGAAGGCAGTGGTTCC+TGG | + | chr3.1:49976493-49976512 | MS.gene41597:CDS | 65.0% | |
| CTCCTCGGAGATTCCCACGG+CGG | + | chr3.1:49975568-49975587 | MS.gene41597:CDS | 65.0% | |
| CTCGGCGGCGCGTCGTTTAA+CGG | + | chr3.1:49975755-49975774 | MS.gene41597:CDS | 65.0% | |
| ! | GATAGCGGCGGGGTTTGGGA+AGG | + | chr3.1:49975964-49975983 | MS.gene41597:CDS | 65.0% |
| AGCCGCCGTGGGAATCTCCG+AGG | - | chr3.1:49975573-49975592 | None:intergenic | 70.0% | |
| CGACGCGCTTCCTCCAGCGA+CGG | + | chr3.1:49975910-49975929 | MS.gene41597:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 49975338 | 49977224 | 49975338 | ID=MS.gene41597 |
| chr3.1 | mRNA | 49975338 | 49977224 | 49975338 | ID=MS.gene41597.t1;Parent=MS.gene41597 |
| chr3.1 | exon | 49975338 | 49977224 | 49975338 | ID=MS.gene41597.t1.exon1;Parent=MS.gene41597.t1 |
| chr3.1 | CDS | 49975338 | 49977224 | 49975338 | ID=cds.MS.gene41597.t1;Parent=MS.gene41597.t1 |
| Gene Sequence |
| Protein sequence |
