AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51064

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51064.t1 MTR_4g107930 97.391 345 9 0 1 345 1 345 0.0 704
MS.gene51064.t1 MTR_4g079770 89.595 346 34 2 1 345 1 345 0.0 644
MS.gene51064.t1 MTR_5g022560 88.116 345 40 1 1 345 1 344 0.0 636
MS.gene51064.t1 MTR_4g047610 87.536 345 41 2 1 345 1 343 0.0 615
MS.gene51064.t1 MTR_4g079470 91.358 324 26 2 23 345 23 345 0.0 614
MS.gene51064.t1 MTR_4g079800 87.963 324 37 2 23 345 23 345 0.0 592
MS.gene51064.t1 MTR_2g075830 75.942 345 79 3 1 345 1 341 0.0 525
MS.gene51064.t1 MTR_4g080700 65.732 321 104 5 26 345 25 340 3.26e-153 434
MS.gene51064.t1 MTR_4g080730 65.732 321 104 5 26 345 25 340 1.94e-152 432
MS.gene51064.t1 MTR_4g080360 53.314 347 155 5 1 345 1 342 1.40e-131 379
MS.gene51064.t1 MTR_4g104370 55.331 347 146 7 1 343 1 342 4.91e-129 373
MS.gene51064.t1 MTR_2g083930 52.754 345 149 5 4 343 7 342 1.27e-128 372
MS.gene51064.t1 MTR_4g079440 53.043 345 143 6 11 343 6 343 4.87e-125 363
MS.gene51064.t1 MTR_3g075390 51.594 345 143 6 15 343 7 343 5.57e-124 360
MS.gene51064.t1 MTR_7g078600 57.419 310 121 6 35 343 37 336 5.82e-121 352
MS.gene51064.t1 MTR_2g090890 50.898 334 157 4 11 344 10 336 7.93e-119 347
MS.gene51064.t1 MTR_3g116080 51.622 339 151 7 11 344 17 347 1.38e-117 344
MS.gene51064.t1 MTR_7g079230 55.016 309 131 5 35 343 34 334 3.20e-117 343
MS.gene51064.t1 MTR_1g107550 55.063 316 131 7 34 343 44 354 2.41e-116 345
MS.gene51064.t1 MTR_4g094918 49.711 346 156 9 10 344 3 341 3.23e-114 336
MS.gene51064.t1 MTR_1g018840 52.336 321 134 7 32 343 50 360 2.32e-110 329
MS.gene51064.t1 MTR_1g018840 52.336 321 134 7 32 343 50 360 4.25e-110 329
MS.gene51064.t1 MTR_3g102220 52.063 315 133 7 40 343 53 360 1.51e-109 328
MS.gene51064.t1 MTR_3g112430 50.482 311 141 5 41 344 37 341 9.80e-102 307
MS.gene51064.t1 MTR_2g015850 53.793 290 127 5 56 343 78 362 6.44e-98 294
MS.gene51064.t1 MTR_2g016180 45.087 346 169 10 12 344 18 355 8.79e-90 278
MS.gene51064.t1 MTR_2g016270 44.898 343 159 10 12 344 18 340 6.58e-88 272
MS.gene51064.t1 MTR_2g067900 45.210 334 157 13 23 342 2 323 2.36e-79 246
MS.gene51064.t1 MTR_2g064475 41.714 350 147 17 39 344 15 351 1.05e-72 229
MS.gene51064.t1 MTR_2g067560 45.652 322 142 14 39 339 15 324 1.35e-72 242
MS.gene51064.t1 MTR_4g125300 42.071 309 160 10 42 344 53 348 8.11e-69 219
MS.gene51064.t1 MTR_7g078630 45.035 282 113 5 34 304 700 950 2.90e-68 230
MS.gene51064.t1 MTR_2g015920 37.677 353 194 12 11 344 13 358 4.00e-68 218
MS.gene51064.t1 MTR_2g066980 36.901 355 163 13 11 344 4 318 3.55e-67 214
MS.gene51064.t1 MTR_4g065077 38.509 322 177 10 34 344 45 356 1.77e-65 211
MS.gene51064.t1 MTR_2g015930 39.623 318 172 11 38 344 50 358 1.53e-64 209
MS.gene51064.t1 MTR_4g071060 39.871 311 161 9 46 341 54 353 5.48e-63 204
MS.gene51064.t1 MTR_1g023210 39.048 315 151 11 45 336 56 352 4.24e-62 202
MS.gene51064.t1 MTR_1g023810 44.635 233 120 6 113 342 35 261 6.82e-62 199
MS.gene51064.t1 MTR_1g094135 36.236 356 192 10 9 341 20 363 3.56e-61 201
MS.gene51064.t1 MTR_8g086470 36.875 320 169 9 34 344 61 356 1.07e-59 196
MS.gene51064.t1 MTR_4g072790 34.202 307 156 10 42 341 50 317 9.14e-44 154
MS.gene51064.t1 MTR_7g078580 64.286 98 34 1 246 343 4 100 1.22e-41 142
MS.gene51064.t1 MTR_2g015840 49.664 149 72 2 16 162 9 156 3.05e-41 145
MS.gene51064.t1 MTR_2g015840 56.250 112 48 1 233 344 161 271 1.36e-36 133
MS.gene51064.t1 MTR_7g079130 70.000 90 27 0 254 343 7 96 1.21e-40 138
MS.gene51064.t1 MTR_4g072340 33.657 309 159 10 42 341 50 321 4.16e-39 141
MS.gene51064.t1 MTR_4g073660 33.657 309 159 10 42 341 49 320 4.38e-39 141
MS.gene51064.t1 MTR_1g025450 39.891 183 83 8 121 297 47 208 1.64e-31 124
MS.gene51064.t1 MTR_7g078310 43.571 140 70 2 83 220 115 247 1.22e-28 112
MS.gene51064.t1 MTR_2g016380 46.281 121 58 4 228 344 18 135 1.29e-26 106
MS.gene51064.t1 MTR_7g111060 26.071 280 172 8 79 336 64 330 1.56e-22 97.4
MS.gene51064.t1 MTR_7g079260 59.722 72 13 1 270 341 7 62 2.87e-22 90.5
MS.gene51064.t1 MTR_7g111050 30.085 236 133 9 133 344 110 337 1.24e-21 94.7
MS.gene51064.t1 MTR_3g029560 27.200 250 150 8 99 344 16 237 4.96e-21 90.9
MS.gene51064.t1 MTR_8g087510 41.985 131 69 5 168 296 23 148 1.36e-20 87.8
MS.gene51064.t1 MTR_2g047960 49.412 85 42 1 136 220 7 90 5.66e-19 81.3
MS.gene51064.t1 MTR_3g082370 26.442 208 131 7 132 323 5 206 2.19e-16 77.8
MS.gene51064.t1 MTR_7g111050 28.061 196 115 7 133 306 105 296 1.61e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51064.t1 AT5G45890 54.986 351 145 6 1 344 1 345 4.71e-135 388
MS.gene51064.t1 AT5G50260 54.046 346 133 6 16 343 4 341 1.23e-128 372
MS.gene51064.t1 AT3G48340 53.582 349 136 9 11 343 4 342 1.03e-123 360
MS.gene51064.t1 AT2G34080 51.170 342 156 6 11 345 8 345 5.60e-121 352
MS.gene51064.t1 AT4G35350 49.858 351 160 7 3 344 9 352 8.05e-119 347
MS.gene51064.t1 AT3G49340 50.000 342 146 7 21 345 8 341 6.87e-116 339
MS.gene51064.t1 AT2G27420 49.425 348 159 6 12 345 4 348 7.52e-116 339
MS.gene51064.t1 AT3G48350 50.720 347 154 7 11 344 1 343 6.13e-115 338
MS.gene51064.t1 AT3G19390 49.853 339 163 5 7 344 13 345 2.87e-114 339
MS.gene51064.t1 AT5G43060 52.761 326 140 7 25 343 34 352 1.64e-113 338
MS.gene51064.t1 AT1G20850 52.077 313 144 4 34 344 45 353 2.60e-111 328
MS.gene51064.t1 AT1G29090 47.414 348 168 8 7 345 14 355 1.27e-110 327
MS.gene51064.t1 AT1G06260 51.176 340 153 6 10 343 9 341 1.35e-110 326
MS.gene51064.t1 AT4G36880 51.553 322 141 7 32 343 44 360 2.39e-110 327
MS.gene51064.t1 AT3G19400 49.379 322 156 5 25 344 32 348 1.57e-109 324
MS.gene51064.t1 AT1G29080 47.110 346 170 8 8 345 6 346 2.80e-107 318
MS.gene51064.t1 AT1G47128 50.809 309 140 7 40 343 50 351 9.04e-107 320
MS.gene51064.t1 AT1G09850 49.677 310 153 3 34 343 26 332 3.48e-102 308
MS.gene51064.t1 AT4G23520 44.857 350 168 10 11 343 7 348 1.39e-99 298
MS.gene51064.t1 AT4G11310 47.896 309 148 6 41 343 50 351 1.24e-98 296
MS.gene51064.t1 AT4G11320 47.249 309 150 6 41 343 57 358 5.94e-98 295
MS.gene51064.t1 AT4G11320 47.249 309 150 6 41 343 57 358 5.94e-98 295
MS.gene51064.t1 AT1G29110 42.045 352 177 9 1 344 1 333 1.00e-88 270
MS.gene51064.t1 AT3G43960 46.226 318 157 9 32 343 36 345 1.06e-86 266
MS.gene51064.t1 AT4G35350 46.667 285 136 7 3 278 9 286 9.78e-84 255
MS.gene51064.t1 AT3G19400 47.266 256 129 4 25 278 32 283 1.40e-75 234
MS.gene51064.t1 AT3G48350 46.619 281 133 7 11 278 1 277 3.65e-75 234
MS.gene51064.t1 AT5G60360 43.042 309 157 11 42 344 61 356 2.08e-71 226
MS.gene51064.t1 AT5G60360 42.718 309 157 12 42 344 61 355 8.91e-69 219
MS.gene51064.t1 AT3G45310 40.673 327 171 12 24 344 47 356 9.78e-69 219
MS.gene51064.t1 AT5G60360 42.333 300 154 11 42 335 61 347 5.55e-67 215
MS.gene51064.t1 AT3G45310 40.122 329 173 13 23 345 46 356 2.96e-66 213
MS.gene51064.t1 AT4G39090 38.298 329 170 11 32 341 43 357 7.67e-63 204
MS.gene51064.t1 AT2G21430 35.028 354 197 11 6 336 6 349 1.36e-62 204
MS.gene51064.t1 AT3G54940 35.833 360 182 13 11 336 10 354 4.14e-59 195
MS.gene51064.t1 AT4G16190 38.095 315 166 10 45 341 60 363 6.13e-57 189
MS.gene51064.t1 AT3G54940 35.165 273 148 8 11 260 10 276 1.65e-43 152
MS.gene51064.t1 AT1G02305 29.778 225 130 7 133 336 116 333 2.52e-23 99.8
MS.gene51064.t1 AT4G01610 26.923 286 177 9 76 336 52 330 8.99e-22 95.1
MS.gene51064.t1 AT4G01610 26.573 286 178 9 76 336 52 330 1.65e-20 91.7
MS.gene51064.t1 AT1G02300 28.910 211 124 6 146 336 146 350 3.29e-19 88.2
MS.gene51064.t1 AT2G22160 39.130 92 54 1 55 146 9 98 4.01e-14 68.2

Find 85 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCAATTGCAACAGAAAT+AGG 0.303591 8.4:-19209270 None:intergenic
TCAATATGGCAAAGTCTATA+AGG 0.330619 8.4:+19208529 MS.gene51064:CDS
TACAAAAGTGGTGTCTTTAC+CGG 0.332301 8.4:+19209315 MS.gene51064:CDS
AGGTTGTGAGGGTGGTCTTA+TGG 0.350865 8.4:+19209065 MS.gene51064:CDS
AAATTCATTATTCAAAATCA+TGG 0.369502 8.4:+19209099 MS.gene51064:CDS
TTGCAATGCCTGCTCATTGT+TGG 0.384601 8.4:-19209229 None:intergenic
ATTCATGCAGCTACCATTAC+CGG 0.385380 8.4:+19209189 MS.gene51064:CDS
TACCCTTATCAAGGTGTTGA+TGG 0.427747 8.4:+19209141 MS.gene51064:CDS
AATAACAAGCTATACAAGTT+AGG 0.429513 8.4:+19208629 MS.gene51064:CDS
GGAATTAATAAGTTGAGTAC+TGG 0.441256 8.4:+19208982 MS.gene51064:CDS
GGAACTGAGTGGGGTGAAGA+AGG 0.443728 8.4:+19209432 MS.gene51064:CDS
GAGCAATGGATGAGTCAATA+TGG 0.445016 8.4:+19208515 MS.gene51064:CDS
TTCCATCAACACCTTGATAA+GGG 0.450919 8.4:-19209143 None:intergenic
AATGCCTGCTCATTGTTGGC+AGG 0.451756 8.4:-19209225 None:intergenic
GTTCCATCAACACCTTGATA+AGG 0.464383 8.4:-19209144 None:intergenic
CAATCCCGTCCGTTGTGGAT+TGG 0.469084 8.4:+19208771 MS.gene51064:CDS
GTTCTTAACCAACCAATACT+TGG 0.469107 8.4:-19209403 None:intergenic
AAGTTTGACAATTAAGCAGT+AGG 0.473215 8.4:-19209525 None:intergenic
TAAGTTGAGTACTGGAAAGT+TGG 0.474031 8.4:+19208990 MS.gene51064:CDS
GGTAATGGTAGCTGCATGAA+TGG 0.481667 8.4:-19209187 None:intergenic
AGCATCTAGAAATAAATTCA+AGG 0.484430 8.4:+19208691 MS.gene51064:CDS
AGATGCTATGAACTCCTCAT+TGG 0.488280 8.4:-19208675 None:intergenic
CATTGACCTTGATTCTTCAC+AGG 0.495833 8.4:-19208815 None:intergenic
ATTGGTTGGTTAAGAACTCA+TGG 0.497126 8.4:+19209409 MS.gene51064:CDS
CAACTCGGTTCCACATGAAC+CGG 0.497716 8.4:-19209334 None:intergenic
GGGGTGAAGAAGGATACATT+AGG 0.500551 8.4:+19209442 MS.gene51064:CDS
GGTGTCACCGCTGTAGGTTA+TGG 0.501955 8.4:+19209363 MS.gene51064:CDS
AGGATACATTAGGATGCAAA+GGG 0.504604 8.4:+19209452 MS.gene51064:CDS
TCTATAAGGATCCTCAAGAA+AGG 0.505398 8.4:+19208543 MS.gene51064:CDS
TCCCGTCCGTTGTGGATTGG+AGG 0.514340 8.4:+19208774 MS.gene51064:CDS
GGTTATGGTGTCGGTAATGA+TGG 0.515702 8.4:+19209378 MS.gene51064:CDS
CTATAAGGATCCTCAAGAAA+GGG 0.516295 8.4:+19208544 MS.gene51064:CDS
AGACGTTCCTCCCTTTCTTG+AGG 0.517763 8.4:-19208554 None:intergenic
GACATCTTCATACCCGGTAA+TGG 0.518079 8.4:-19209202 None:intergenic
TTGCTCGTGCCTCTCATACA+TGG 0.519986 8.4:-19208498 None:intergenic
TTCCTCCAATCCACAACGGA+CGG 0.522694 8.4:-19208776 None:intergenic
AGTTTGACAATTAAGCAGTA+GGG 0.525933 8.4:-19209524 None:intergenic
GATCATGGTGTCACCGCTGT+AGG 0.528394 8.4:+19209357 MS.gene51064:CDS
TCAGCTGTTGCAGCGACTGA+AGG 0.530010 8.4:+19208961 MS.gene51064:CDS
GAACTCATGGGGAACTGAGT+GGG 0.530453 8.4:+19209422 MS.gene51064:CDS
AAGGATACATTAGGATGCAA+AGG 0.533659 8.4:+19209451 MS.gene51064:CDS
TGTATGAGAGGCACGAGCAA+TGG 0.535639 8.4:+19208501 MS.gene51064:CDS
TCTCATACATGGAGTCGACT+TGG 0.538645 8.4:-19208487 None:intergenic
CTTGTTGATTGTGATACAAA+AGG 0.539332 8.4:+19209033 MS.gene51064:CDS
GTGGACCAAGGTTGTGAGGG+TGG 0.540762 8.4:+19209057 MS.gene51064:CDS
GTTACACCTGTGAAGAATCA+AGG 0.542932 8.4:+19208809 MS.gene51064:CDS
TCCTCCAATCCACAACGGAC+GGG 0.547637 8.4:-19208775 None:intergenic
GTTGTGGATTGGAGGAAGAA+AGG 0.549943 8.4:+19208782 MS.gene51064:CDS
AAATTGAAAGTCAGATCCAC+TGG 0.552701 8.4:-19209292 None:intergenic
GATGCCGCTGAAGGACTTTG+TGG 0.554041 8.4:+19209480 MS.gene51064:CDS
TGTCCCTGCCAACAATGAGC+AGG 0.557594 8.4:+19209221 MS.gene51064:CDS
GTAATGATGGAACCAAGTAT+TGG 0.568388 8.4:+19209391 MS.gene51064:CDS
TGATGGAACCAAGTATTGGT+TGG 0.568906 8.4:+19209395 MS.gene51064:CDS
CGGTTCATGTGGAACCGAGT+TGG 0.572572 8.4:+19209335 MS.gene51064:CDS
TTGGTTGGTTAAGAACTCAT+GGG 0.574582 8.4:+19209410 MS.gene51064:CDS
AGGGGAGTTGATGCCGCTGA+AGG 0.575466 8.4:+19209471 MS.gene51064:CDS
TCTGTTGCAATTGATGCCAG+TGG 0.578268 8.4:+19209276 MS.gene51064:CDS
TAAGACCACCCTCACAACCT+TGG 0.579957 8.4:-19209062 None:intergenic
AAGTGCAATCCCGTCCGTTG+TGG 0.579982 8.4:+19208766 MS.gene51064:CDS
GGTGTCTTTACCGGTTCATG+TGG 0.583724 8.4:+19209324 MS.gene51064:CDS
TGTGGAACCGAGTTGGATCA+TGG 0.584259 8.4:+19209342 MS.gene51064:CDS
GCATCTAGAAATAAATTCAA+GGG 0.590276 8.4:+19208692 MS.gene51064:CDS
ATGCCTGCTCATTGTTGGCA+GGG 0.601537 8.4:-19209224 None:intergenic
AACTCATGGGGAACTGAGTG+GGG 0.603863 8.4:+19209423 MS.gene51064:CDS
GGCAGGGACATCTTCATACC+CGG 0.606676 8.4:-19209208 None:intergenic
ACCGCTGTAGGTTATGGTGT+CGG 0.606963 8.4:+19209369 MS.gene51064:CDS
TTCATGCAGCTACCATTACC+GGG 0.608280 8.4:+19209190 MS.gene51064:CDS
GAAGCCGCATACCCTTATCA+AGG 0.613478 8.4:+19209132 MS.gene51064:CDS
GGTGTGGACCAAGGTTGTGA+GGG 0.614905 8.4:+19209054 MS.gene51064:CDS
TAAGGATCCTCAAGAAAGGG+AGG 0.633799 8.4:+19208547 MS.gene51064:CDS
AGGTGTGGACCAAGGTTGTG+AGG 0.640947 8.4:+19209053 MS.gene51064:CDS
CTATGAACTCCTCATTGGTG+AGG 0.645140 8.4:-19208670 None:intergenic
TGGTTGGTTAAGAACTCATG+GGG 0.647156 8.4:+19209411 MS.gene51064:CDS
AAGTCGACTCCATGTATGAG+AGG 0.647740 8.4:+19208489 MS.gene51064:CDS
AGAACTCATGGGGAACTGAG+TGG 0.653772 8.4:+19209421 MS.gene51064:CDS
TGATTGTGATACAAAAGGTG+TGG 0.663878 8.4:+19209038 MS.gene51064:CDS
ATTTGCAGACCTCACCAATG+AGG 0.664553 8.4:+19208661 MS.gene51064:CDS
AATGCCACAAAGTCCTTCAG+CGG 0.670519 8.4:-19209484 None:intergenic
AACACCTTGATAAGGGTATG+CGG 0.671998 8.4:-19209136 None:intergenic
GTGAAGAATCAAGGTCAATG+TGG 0.680408 8.4:+19208818 MS.gene51064:CDS
TTTCTTCCTCCAATCCACAA+CGG 0.681262 8.4:-19208780 None:intergenic
GGTGACACCATGATCCAACT+CGG 0.706899 8.4:-19209349 None:intergenic
ACCGACACCATAACCTACAG+CGG 0.712402 8.4:-19209370 None:intergenic
GATACAAAAGGTGTGGACCA+AGG 0.723079 8.4:+19209045 MS.gene51064:CDS
GGATACATTAGGATGCAAAG+GGG 0.764149 8.4:+19209453 MS.gene51064:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAAATTACAATTAATTA+TGG - chr8.4:19208911-19208930 None:intergenic 10.0%
!! AAATTCATTATTCAAAATCA+TGG + chr8.4:19209099-19209118 MS.gene51064:CDS 15.0%
!!! AATTGTAATTTACTTTCTTT+TGG + chr8.4:19208916-19208935 MS.gene51064:intron 15.0%
!!! ACTATAGTATAACTGATTTT+TGG - chr8.4:19208405-19208424 None:intergenic 20.0%
! AATAACAAGCTATACAAGTT+AGG + chr8.4:19208629-19208648 MS.gene51064:CDS 25.0%
! AGCATCTAGAAATAAATTCA+AGG + chr8.4:19208691-19208710 MS.gene51064:CDS 25.0%
! GCATCTAGAAATAAATTCAA+GGG + chr8.4:19208692-19208711 MS.gene51064:CDS 25.0%
!! ATTAACATTCATTTTCTGCT+TGG + chr8.4:19208430-19208449 MS.gene51064:CDS 25.0%
!! ATTGAAGTTTTCAACAATGA+TGG + chr8.4:19208605-19208624 MS.gene51064:CDS 25.0%
!! GACTTTCAATTTTACAAAAG+TGG + chr8.4:19209303-19209322 MS.gene51064:CDS 25.0%
!! TTAACATTCATTTTCTGCTT+GGG + chr8.4:19208431-19208450 MS.gene51064:CDS 25.0%
!!! AATTTACTTTCTTTTGGTGT+AGG + chr8.4:19208922-19208941 MS.gene51064:intron 25.0%
TCAATATGGCAAAGTCTATA+AGG + chr8.4:19208529-19208548 MS.gene51064:CDS 30.0%
! CTTGTTGATTGTGATACAAA+AGG + chr8.4:19209033-19209052 MS.gene51064:CDS 30.0%
! GGAATTAATAAGTTGAGTAC+TGG + chr8.4:19208982-19209001 MS.gene51064:CDS 30.0%
AAATTGAAAGTCAGATCCAC+TGG - chr8.4:19209295-19209314 None:intergenic 35.0%
AAGGATACATTAGGATGCAA+AGG + chr8.4:19209451-19209470 MS.gene51064:CDS 35.0%
AGGATACATTAGGATGCAAA+GGG + chr8.4:19209452-19209471 MS.gene51064:CDS 35.0%
CTATAAGGATCCTCAAGAAA+GGG + chr8.4:19208544-19208563 MS.gene51064:CDS 35.0%
GCATCAATTGCAACAGAAAT+AGG - chr8.4:19209273-19209292 None:intergenic 35.0%
GTTCTTAACCAACCAATACT+TGG - chr8.4:19209406-19209425 None:intergenic 35.0%
TACAAAAGTGGTGTCTTTAC+CGG + chr8.4:19209315-19209334 MS.gene51064:CDS 35.0%
TCTATAAGGATCCTCAAGAA+AGG + chr8.4:19208543-19208562 MS.gene51064:CDS 35.0%
TGATTGTGATACAAAAGGTG+TGG + chr8.4:19209038-19209057 MS.gene51064:CDS 35.0%
TTCCATCAACACCTTGATAA+GGG - chr8.4:19209146-19209165 None:intergenic 35.0%
! ATTGGTTGGTTAAGAACTCA+TGG + chr8.4:19209409-19209428 MS.gene51064:CDS 35.0%
! GTAATGATGGAACCAAGTAT+TGG + chr8.4:19209391-19209410 MS.gene51064:CDS 35.0%
! TTGGTTGGTTAAGAACTCAT+GGG + chr8.4:19209410-19209429 MS.gene51064:CDS 35.0%
!! AGTATTTGTTTTCGCGATTG+AGG - chr8.4:19208729-19208748 None:intergenic 35.0%
!! TAAGTTGAGTACTGGAAAGT+TGG + chr8.4:19208990-19209009 MS.gene51064:CDS 35.0%
!! TTTTGGTGTAGGATGTTGTT+GGG + chr8.4:19208933-19208952 MS.gene51064:intron 35.0%
AGATGCTATGAACTCCTCAT+TGG - chr8.4:19208678-19208697 None:intergenic 40.0%
ATTCATGCAGCTACCATTAC+CGG + chr8.4:19209189-19209208 MS.gene51064:CDS 40.0%
CATTGACCTTGATTCTTCAC+AGG - chr8.4:19208818-19208837 None:intergenic 40.0%
GAGCAATGGATGAGTCAATA+TGG + chr8.4:19208515-19208534 MS.gene51064:CDS 40.0%
GGATACATTAGGATGCAAAG+GGG + chr8.4:19209453-19209472 MS.gene51064:CDS 40.0%
GTGAAGAATCAAGGTCAATG+TGG + chr8.4:19208818-19208837 MS.gene51064:CDS 40.0%
GTTACACCTGTGAAGAATCA+AGG + chr8.4:19208809-19208828 MS.gene51064:CDS 40.0%
GTTCCATCAACACCTTGATA+AGG - chr8.4:19209147-19209166 None:intergenic 40.0%
TTTCTTCCTCCAATCCACAA+CGG - chr8.4:19208783-19208802 None:intergenic 40.0%
! AACACCTTGATAAGGGTATG+CGG - chr8.4:19209139-19209158 None:intergenic 40.0%
! TGGTTGGTTAAGAACTCATG+GGG + chr8.4:19209411-19209430 MS.gene51064:CDS 40.0%
!! CTTTTGGTGTAGGATGTTGT+TGG + chr8.4:19208932-19208951 MS.gene51064:intron 40.0%
!! TACCCTTATCAAGGTGTTGA+TGG + chr8.4:19209141-19209160 MS.gene51064:CDS 40.0%
!! TGATGGAACCAAGTATTGGT+TGG + chr8.4:19209395-19209414 MS.gene51064:CDS 40.0%
AATGCCACAAAGTCCTTCAG+CGG - chr8.4:19209487-19209506 None:intergenic 45.0%
ATTTGCAGACCTCACCAATG+AGG + chr8.4:19208661-19208680 MS.gene51064:CDS 45.0%
CTATGAACTCCTCATTGGTG+AGG - chr8.4:19208673-19208692 None:intergenic 45.0%
GACATCTTCATACCCGGTAA+TGG - chr8.4:19209205-19209224 None:intergenic 45.0%
GGGGTGAAGAAGGATACATT+AGG + chr8.4:19209442-19209461 MS.gene51064:CDS 45.0%
TAAGGATCCTCAAGAAAGGG+AGG + chr8.4:19208547-19208566 MS.gene51064:CDS 45.0%
TCTCATACATGGAGTCGACT+TGG - chr8.4:19208490-19208509 None:intergenic 45.0%
TCTGTTGCAATTGATGCCAG+TGG + chr8.4:19209276-19209295 MS.gene51064:CDS 45.0%
TTCATGCAGCTACCATTACC+GGG + chr8.4:19209190-19209209 MS.gene51064:CDS 45.0%
TTGCAATGCCTGCTCATTGT+TGG - chr8.4:19209232-19209251 None:intergenic 45.0%
! AAGTCGACTCCATGTATGAG+AGG + chr8.4:19208489-19208508 MS.gene51064:CDS 45.0%
! GATACAAAAGGTGTGGACCA+AGG + chr8.4:19209045-19209064 MS.gene51064:CDS 45.0%
! GGTAATGGTAGCTGCATGAA+TGG - chr8.4:19209190-19209209 None:intergenic 45.0%
!! GGTTATGGTGTCGGTAATGA+TGG + chr8.4:19209378-19209397 MS.gene51064:CDS 45.0%
!! GTTGTGGATTGGAGGAAGAA+AGG + chr8.4:19208782-19208801 MS.gene51064:CDS 45.0%
AACTCATGGGGAACTGAGTG+GGG + chr8.4:19209423-19209442 MS.gene51064:CDS 50.0%
AATGCCTGCTCATTGTTGGC+AGG - chr8.4:19209228-19209247 None:intergenic 50.0%
ACCGACACCATAACCTACAG+CGG - chr8.4:19209373-19209392 None:intergenic 50.0%
ACCGCTGTAGGTTATGGTGT+CGG + chr8.4:19209369-19209388 MS.gene51064:CDS 50.0%
AGAACTCATGGGGAACTGAG+TGG + chr8.4:19209421-19209440 MS.gene51064:CDS 50.0%
AGACGTTCCTCCCTTTCTTG+AGG - chr8.4:19208557-19208576 None:intergenic 50.0%
ATGCCTGCTCATTGTTGGCA+GGG - chr8.4:19209227-19209246 None:intergenic 50.0%
CAACTCGGTTCCACATGAAC+CGG - chr8.4:19209337-19209356 None:intergenic 50.0%
GAACTCATGGGGAACTGAGT+GGG + chr8.4:19209422-19209441 MS.gene51064:CDS 50.0%
GAAGCCGCATACCCTTATCA+AGG + chr8.4:19209132-19209151 MS.gene51064:CDS 50.0%
GGTGACACCATGATCCAACT+CGG - chr8.4:19209352-19209371 None:intergenic 50.0%
TAAGACCACCCTCACAACCT+TGG - chr8.4:19209065-19209084 None:intergenic 50.0%
TTCCTCCAATCCACAACGGA+CGG - chr8.4:19208779-19208798 None:intergenic 50.0%
TTGCTCGTGCCTCTCATACA+TGG - chr8.4:19208501-19208520 None:intergenic 50.0%
! AGGTTGTGAGGGTGGTCTTA+TGG + chr8.4:19209065-19209084 MS.gene51064:CDS 50.0%
! TGTATGAGAGGCACGAGCAA+TGG + chr8.4:19208501-19208520 MS.gene51064:CDS 50.0%
! TGTGGAACCGAGTTGGATCA+TGG + chr8.4:19209342-19209361 MS.gene51064:CDS 50.0%
!! GGTGTCTTTACCGGTTCATG+TGG + chr8.4:19209324-19209343 MS.gene51064:CDS 50.0%
AAGTGCAATCCCGTCCGTTG+TGG + chr8.4:19208766-19208785 MS.gene51064:CDS 55.0%
AGGTGTGGACCAAGGTTGTG+AGG + chr8.4:19209053-19209072 MS.gene51064:CDS 55.0%
CAATCCCGTCCGTTGTGGAT+TGG + chr8.4:19208771-19208790 MS.gene51064:CDS 55.0%
CGGTTCATGTGGAACCGAGT+TGG + chr8.4:19209335-19209354 MS.gene51064:CDS 55.0%
GATGCCGCTGAAGGACTTTG+TGG + chr8.4:19209480-19209499 MS.gene51064:CDS 55.0%
GGAACTGAGTGGGGTGAAGA+AGG + chr8.4:19209432-19209451 MS.gene51064:CDS 55.0%
GGCAGGGACATCTTCATACC+CGG - chr8.4:19209211-19209230 None:intergenic 55.0%
GGTGTGGACCAAGGTTGTGA+GGG + chr8.4:19209054-19209073 MS.gene51064:CDS 55.0%
TCAGCTGTTGCAGCGACTGA+AGG + chr8.4:19208961-19208980 MS.gene51064:CDS 55.0%
TCCTCCAATCCACAACGGAC+GGG - chr8.4:19208778-19208797 None:intergenic 55.0%
TGTCCCTGCCAACAATGAGC+AGG + chr8.4:19209221-19209240 MS.gene51064:CDS 55.0%
! GGTGTCACCGCTGTAGGTTA+TGG + chr8.4:19209363-19209382 MS.gene51064:CDS 55.0%
!! GATCATGGTGTCACCGCTGT+AGG + chr8.4:19209357-19209376 MS.gene51064:CDS 55.0%
GTGGACCAAGGTTGTGAGGG+TGG + chr8.4:19209057-19209076 MS.gene51064:CDS 60.0%
!! AGGGGAGTTGATGCCGCTGA+AGG + chr8.4:19209471-19209490 MS.gene51064:CDS 60.0%
!! TCCCGTCCGTTGTGGATTGG+AGG + chr8.4:19208774-19208793 MS.gene51064:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 19208395 19209536 19208395 ID=MS.gene51064
chr8.4 mRNA 19208395 19209536 19208395 ID=MS.gene51064.t1;Parent=MS.gene51064
chr8.4 exon 19208395 19208839 19208395 ID=MS.gene51064.t1.exon1;Parent=MS.gene51064.t1
chr8.4 CDS 19208395 19208839 19208395 ID=cds.MS.gene51064.t1;Parent=MS.gene51064.t1
chr8.4 exon 19208944 19209536 19208944 ID=MS.gene51064.t1.exon2;Parent=MS.gene51064.t1
chr8.4 CDS 19208944 19209536 19208944 ID=cds.MS.gene51064.t1;Parent=MS.gene51064.t1
Gene Sequence

>MS.gene51064

ATGGCTTCCAAAAATCAGTTATACTATAGTATTACATTAACATTCATTTTCTGCTTGGGATTGTGTGCTATTCAAGTCACTTCTCGCTCTCTCCAAGTCGACTCCATGTATGAGAGGCACGAGCAATGGATGAGTCAATATGGCAAAGTCTATAAGGATCCTCAAGAAAGGGAGGAACGTCTCAAGATATTCACAGCAAATGTGAATTACATTGAAGTTTTCAACAATGATGGCAATAACAAGCTATACAAGTTAGGCATTAATCAATTTGCAGACCTCACCAATGAGGAGTTCATAGCATCTAGAAATAAATTCAAGGGTCATATGTGCTCCTCAATCGCGAAAACAAATACTTTTAAGTATGAAAATGTAAGTGCAATCCCGTCCGTTGTGGATTGGAGGAAGAAAGGAGCAGTTACACCTGTGAAGAATCAAGGTCAATGTGGTAAGTGTTAATCTAATAAGTAATGTACTCAATTCTATATGTGATAAAAAAATTTAATTGTCATCTAACCATAATTAATTGTAATTTACTTTCTTTTGGTGTAGGATGTTGTTGGGCATTTTCAGCTGTTGCAGCGACTGAAGGAATTAATAAGTTGAGTACTGGAAAGTTGGTCTCTTTATCAGAACAAGAACTTGTTGATTGTGATACAAAAGGTGTGGACCAAGGTTGTGAGGGTGGTCTTATGGACGATGCTTTCAAATTCATTATTCAAAATCATGGACTTAGTACTGAAGCCGCATACCCTTATCAAGGTGTTGATGGAACATGCAATGCAAACAAAGCGTCCATTCATGCAGCTACCATTACCGGGTATGAAGATGTCCCTGCCAACAATGAGCAGGCATTGCAAAAAGCTGTCGCAAATCAACCTATTTCTGTTGCAATTGATGCCAGTGGATCTGACTTTCAATTTTACAAAAGTGGTGTCTTTACCGGTTCATGTGGAACCGAGTTGGATCATGGTGTCACCGCTGTAGGTTATGGTGTCGGTAATGATGGAACCAAGTATTGGTTGGTTAAGAACTCATGGGGAACTGAGTGGGGTGAAGAAGGATACATTAGGATGCAAAGGGGAGTTGATGCCGCTGAAGGACTTTGTGGCATTGCAATGCAAGCATCTTACCCTACTGCTTAA
Protein sequence

>MS.gene51064.t1

MASKNQLYYSITLTFIFCLGLCAIQVTSRSLQVDSMYERHEQWMSQYGKVYKDPQEREERLKIFTANVNYIEVFNNDGNNKLYKLGINQFADLTNEEFIASRNKFKGHMCSSIAKTNTFKYENVSAIPSVVDWRKKGAVTPVKNQGQCGCCWAFSAVAATEGINKLSTGKLVSLSEQELVDCDTKGVDQGCEGGLMDDAFKFIIQNHGLSTEAAYPYQGVDGTCNANKASIHAATITGYEDVPANNEQALQKAVANQPISVAIDASGSDFQFYKSGVFTGSCGTELDHGVTAVGYGVGNDGTKYWLVKNSWGTEWGEEGYIRMQRGVDAAEGLCGIAMQASYPTA