Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56565.t1 | XP_013456774.1 | 98.9 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 2.40E-186 | 661.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56565.t1 | A0A072UY68 | 98.9 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 1.7e-186 | 661.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene56565 | 0.855565 | 5.79E-62 | -1.69E-46 |
| MS.gene049208 | MS.gene56565 | 0.803731 | 3.03E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene56565 | 0.847369 | 1.21E-59 | -1.69E-46 |
| MS.gene049368 | MS.gene56565 | 0.815832 | 7.55E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene56565 | 0.811177 | 7.98E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene56565 | 0.856112 | 4.01E-62 | -1.69E-46 |
| MS.gene049887 | MS.gene56565 | 0.836921 | 7.05E-57 | -1.69E-46 |
| MS.gene050253 | MS.gene56565 | 0.815059 | 1.12E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene56565 | 0.823444 | 1.38E-53 | -1.69E-46 |
| MS.gene050556 | MS.gene56565 | 0.80998 | 1.45E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene56565 | 0.840751 | 7.20E-58 | -1.69E-46 |
| MS.gene050901 | MS.gene56565 | 0.801751 | 7.77E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene56565 | 0.810749 | 9.87E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene56565 | 0.81795 | 2.53E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene56565 | 0.826287 | 2.95E-54 | -1.69E-46 |
| MS.gene051676 | MS.gene56565 | 0.811415 | 7.08E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene56565 | 0.828994 | 6.60E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene56565 | 0.828288 | 9.77E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene56565 | 0.831292 | 1.81E-55 | -1.69E-46 |
| MS.gene051852 | MS.gene56565 | 0.828706 | 7.75E-55 | -1.69E-46 |
| MS.gene051885 | MS.gene56565 | 0.805257 | 1.46E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene56565 | 0.819309 | 1.24E-52 | -1.69E-46 |
| MS.gene052016 | MS.gene56565 | 0.805445 | 1.33E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene56565 | 0.808807 | 2.58E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene56565 | 0.802504 | 5.44E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene56565 | 0.8588 | 6.42E-63 | -1.69E-46 |
| MS.gene052335 | MS.gene56565 | 0.812297 | 4.55E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene56565 | 0.852491 | 4.46E-61 | -1.69E-46 |
| MS.gene052516 | MS.gene56565 | 0.833803 | 4.32E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene56565 | 0.836446 | 9.32E-57 | -1.69E-46 |
| MS.gene053079 | MS.gene56565 | 0.829319 | 5.50E-55 | -1.69E-46 |
| MS.gene053143 | MS.gene56565 | 0.8318 | 1.36E-55 | -1.69E-46 |
| MS.gene053144 | MS.gene56565 | 0.835984 | 1.22E-56 | -1.69E-46 |
| MS.gene053581 | MS.gene56565 | 0.851136 | 1.08E-60 | -1.69E-46 |
| MS.gene053677 | MS.gene56565 | 0.811974 | 5.35E-51 | -1.69E-46 |
| MS.gene053786 | MS.gene56565 | 0.814793 | 1.29E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene56565 | 0.800612 | 1.33E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene56565 | 0.819311 | 1.24E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene56565 | 0.816685 | 4.87E-52 | -1.69E-46 |
| MS.gene055311 | MS.gene56565 | 0.810351 | 1.20E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene56565 | 0.833308 | 5.75E-56 | -1.69E-46 |
| MS.gene055314 | MS.gene56565 | 0.807651 | 4.55E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene56565 | 0.844983 | 5.39E-59 | -1.69E-46 |
| MS.gene055466 | MS.gene56565 | 0.818491 | 1.91E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene56565 | 0.839856 | 1.23E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene56565 | 0.855263 | 7.09E-62 | -1.69E-46 |
| MS.gene055513 | MS.gene56565 | 0.8732 | 1.77E-67 | -1.69E-46 |
| MS.gene055537 | MS.gene56565 | 0.80051 | 1.39E-48 | -1.69E-46 |
| MS.gene055580 | MS.gene56565 | -0.813929 | 2.00E-51 | -1.69E-46 |
| MS.gene05574 | MS.gene56565 | 0.816181 | 6.31E-52 | -1.69E-46 |
| MS.gene055864 | MS.gene56565 | 0.806536 | 7.84E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene56565 | 0.814603 | 1.42E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene56565 | -0.819524 | 1.11E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene56565 | 0.819436 | 1.16E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene56565 | 0.825944 | 3.56E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene56565 | 0.856509 | 3.07E-62 | -1.69E-46 |
| MS.gene056390 | MS.gene56565 | 0.852842 | 3.54E-61 | -1.69E-46 |
| MS.gene056522 | MS.gene56565 | -0.81362 | 2.33E-51 | -1.69E-46 |
| MS.gene056578 | MS.gene56565 | 0.806489 | 8.03E-50 | -1.69E-46 |
| MS.gene056677 | MS.gene56565 | 0.800193 | 1.62E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene56565 | 0.83369 | 4.61E-56 | -1.69E-46 |
| MS.gene057294 | MS.gene56565 | 0.805465 | 1.32E-49 | -1.69E-46 |
| MS.gene058087 | MS.gene56565 | 0.803201 | 3.90E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene56565 | 0.80662 | 7.53E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene56565 | 0.807996 | 3.85E-50 | -1.69E-46 |
| MS.gene058492 | MS.gene56565 | 0.838369 | 3.00E-57 | -1.69E-46 |
| MS.gene058625 | MS.gene56565 | 0.814874 | 1.23E-51 | -1.69E-46 |
| MS.gene058638 | MS.gene56565 | 0.816315 | 5.89E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene56565 | 0.825195 | 5.35E-54 | -1.69E-46 |
| MS.gene058649 | MS.gene56565 | 0.804024 | 2.63E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene56565 | 0.846654 | 1.90E-59 | -1.69E-46 |
| MS.gene059170 | MS.gene56565 | 0.827723 | 1.34E-54 | -1.69E-46 |
| MS.gene059171 | MS.gene56565 | 0.857838 | 1.24E-62 | -1.69E-46 |
| MS.gene059227 | MS.gene56565 | 0.824142 | 9.47E-54 | -1.69E-46 |
| MS.gene059570 | MS.gene56565 | 0.802344 | 5.87E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene56565 | 0.809163 | 2.17E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene56565 | 0.831022 | 2.11E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene56565 | 0.806173 | 9.35E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene56565 | 0.812327 | 4.48E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene56565 | 0.826891 | 2.11E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene56565 | 0.869936 | 2.13E-66 | -1.69E-46 |
| MS.gene061160 | MS.gene56565 | 0.802182 | 6.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56565.t1 | MTR_4g082350 | 98.883 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 0.0 | 723 |
| MS.gene56565.t1 | MTR_4g109020 | 28.082 | 292 | 198 | 9 | 49 | 331 | 6 | 294 | 7.34e-29 | 114 |
| MS.gene56565.t1 | MTR_3g037110 | 27.703 | 296 | 186 | 8 | 49 | 330 | 6 | 287 | 6.45e-26 | 106 |
| MS.gene56565.t1 | MTR_4g096890 | 26.073 | 303 | 197 | 7 | 41 | 336 | 7 | 289 | 1.80e-17 | 82.4 |
| MS.gene56565.t1 | MTR_7g021620 | 26.316 | 304 | 199 | 7 | 39 | 336 | 5 | 289 | 8.51e-17 | 80.5 |
| MS.gene56565.t1 | MTR_3g088975 | 24.756 | 307 | 211 | 6 | 39 | 336 | 5 | 300 | 2.06e-15 | 76.6 |
| MS.gene56565.t1 | MTR_1g029440 | 23.127 | 307 | 225 | 6 | 35 | 336 | 1 | 301 | 1.05e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56565.t1 | AT1G69430 | 66.462 | 325 | 102 | 2 | 17 | 335 | 8 | 331 | 2.83e-154 | 437 |
| MS.gene56565.t1 | AT1G26650 | 63.939 | 330 | 116 | 3 | 24 | 350 | 2 | 331 | 8.05e-154 | 436 |
| MS.gene56565.t1 | AT4G19950 | 27.451 | 306 | 190 | 9 | 41 | 336 | 7 | 290 | 8.72e-15 | 74.7 |
| MS.gene56565.t1 | AT5G61340 | 28.311 | 219 | 136 | 8 | 119 | 329 | 80 | 285 | 1.57e-12 | 68.2 |
| MS.gene56565.t1 | AT5G61340 | 28.311 | 219 | 136 | 8 | 119 | 329 | 113 | 318 | 1.59e-12 | 68.6 |
Find 67 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGTTCTGGAGGATGTTTC+GGG | 0.171105 | 4.2:+27420834 | MS.gene56565:CDS |
| CTCGGTTCTGGAGGATGTTT+CGG | 0.203669 | 4.2:+27420833 | MS.gene56565:CDS |
| GAGAAACTATAAGGATTCTT+AGG | 0.245365 | 4.2:+27420265 | MS.gene56565:CDS |
| TGTAGTGCATTGGCTGTTCT+TGG | 0.255096 | 4.2:+27420708 | MS.gene56565:CDS |
| TTGTGAAGAATCTTACTATT+AGG | 0.290531 | 4.2:+27420379 | MS.gene56565:CDS |
| GAGGTTGTTCTCCTAGGATT+AGG | 0.293873 | 4.2:+27420127 | MS.gene56565:CDS |
| TGCGTTGGTGATCTCGGTTC+TGG | 0.297916 | 4.2:+27420821 | MS.gene56565:CDS |
| TATTCGAGAAAGAAGTTTGA+TGG | 0.334246 | 4.2:+27420567 | MS.gene56565:CDS |
| TTTACGTCAAGCTTTAGAAT+TGG | 0.356836 | 4.2:+27420188 | MS.gene56565:CDS |
| ATATTCTTAGAGAAACTATA+AGG | 0.357854 | 4.2:+27420256 | MS.gene56565:CDS |
| GCCCATTGTTTCAGCAGAAA+TGG | 0.362209 | 4.2:-27421156 | None:intergenic |
| AATTCAATCAATGAATGCTT+TGG | 0.379030 | 4.2:+27420233 | MS.gene56565:CDS |
| TGTGCTATTGTCTAATGTAT+TGG | 0.379670 | 4.2:+27420344 | MS.gene56565:CDS |
| ATATATCTTGGATCAACAAT+AGG | 0.400163 | 4.2:+27420918 | MS.gene56565:CDS |
| TGTTGTGTATGCTGCATTGA+TGG | 0.401523 | 4.2:+27420746 | MS.gene56565:CDS |
| AGGTTGTTCTCCTAGGATTA+GGG | 0.404867 | 4.2:+27420128 | MS.gene56565:CDS |
| CAGCGTTGCGTTGGTGATCT+CGG | 0.412590 | 4.2:+27420815 | MS.gene56565:CDS |
| GTGTGATCGTGGCAAAGTTT+TGG | 0.412812 | 4.2:+27420601 | MS.gene56565:CDS |
| GTCGGTCTGCTAATATATCT+TGG | 0.415716 | 4.2:+27420906 | MS.gene56565:CDS |
| GCAGCATACACAACAACATT+AGG | 0.417117 | 4.2:-27420738 | None:intergenic |
| GGCCATTTCTGCTGAAACAA+TGG | 0.429412 | 4.2:+27421154 | MS.gene56565:CDS |
| GACAATAGCACAGCAGAAAC+AGG | 0.430186 | 4.2:-27420333 | None:intergenic |
| AACAATAGGAATGGCCTTTG+TGG | 0.433278 | 4.2:+27420932 | MS.gene56565:CDS |
| TGCGGATACGGTGATTGCTT+CGG | 0.443552 | 4.2:+27420470 | MS.gene56565:CDS |
| TGGGCTTGTACAGTTATTGT+TGG | 0.445242 | 4.2:+27420648 | MS.gene56565:CDS |
| ATTGTTGTTATTGTCGAAAA+CGG | 0.446504 | 4.2:+27420518 | MS.gene56565:CDS |
| CAAGTGGAGGTTGTTCTCCT+AGG | 0.449328 | 4.2:+27420121 | MS.gene56565:CDS |
| GTAGTGCATTGGCTGTTCTT+GGG | 0.473904 | 4.2:+27420709 | MS.gene56565:CDS |
| GCCATTTCTGCTGAAACAAT+GGG | 0.478130 | 4.2:+27421155 | MS.gene56565:CDS |
| AGATACTTGCGACGTATATG+TGG | 0.480298 | 4.2:+27420628 | MS.gene56565:CDS |
| TTGTCAGAGATTTGCGGATA+CGG | 0.482242 | 4.2:+27420458 | MS.gene56565:CDS |
| TGACAAGATTGCTTAATCAT+AGG | 0.488189 | 4.2:-27420441 | None:intergenic |
| AATCATTTGCAGCGTTGCGT+TGG | 0.493610 | 4.2:+27420806 | MS.gene56565:CDS |
| GGATTCTTAGGTTTAATGCA+TGG | 0.498954 | 4.2:+27420277 | MS.gene56565:CDS |
| TCTTACTATTAGGCTTATGT+TGG | 0.501948 | 4.2:+27420389 | MS.gene56565:CDS |
| TTTAGCATGGAGAACTCAAA+TGG | 0.507639 | 4.2:+27421104 | MS.gene56565:CDS |
| GCAATCTTGTCAGAGATTTG+CGG | 0.510716 | 4.2:+27420452 | MS.gene56565:CDS |
| ATATGATCTACCCTAATCCT+AGG | 0.527505 | 4.2:-27420138 | None:intergenic |
| AATGTGGGAAGGGCCGCTCT+TGG | 0.532814 | 4.2:+27421010 | MS.gene56565:CDS |
| GATTCTTAGGTTTAATGCAT+GGG | 0.536767 | 4.2:+27420278 | MS.gene56565:CDS |
| ATAGGAATGGCCTTTGTGGA+GGG | 0.546492 | 4.2:+27420936 | MS.gene56565:CDS |
| TGCTTAATCATAGGTCTCAA+AGG | 0.555452 | 4.2:-27420432 | None:intergenic |
| GTTATTGTCGAAAACGGCTG+TGG | 0.558964 | 4.2:+27420524 | MS.gene56565:CDS |
| GTGTATGCTGCATTGATGGT+CGG | 0.566529 | 4.2:+27420750 | MS.gene56565:CDS |
| GTGATGGATCTTCGAGAATG+TGG | 0.574992 | 4.2:+27420994 | MS.gene56565:CDS |
| AATAGGAATGGCCTTTGTGG+AGG | 0.586579 | 4.2:+27420935 | MS.gene56565:CDS |
| TCTTGGATCAACAATAGGAA+TGG | 0.587680 | 4.2:+27420923 | MS.gene56565:CDS |
| TTTAATCAAAGGTCAGACTC+AGG | 0.592291 | 4.2:+27420884 | MS.gene56565:CDS |
| AGAGTAAAGACACTGAGTTA+TGG | 0.598968 | 4.2:+27420972 | MS.gene56565:CDS |
| TAGGAATGGCCTTTGTGGAG+GGG | 0.600285 | 4.2:+27420937 | MS.gene56565:CDS |
| ATCAAAGGTCAGACTCAGGT+CGG | 0.608137 | 4.2:+27420888 | MS.gene56565:CDS |
| CGGTTCTGGAGGATGTTTCG+GGG | 0.610462 | 4.2:+27420835 | MS.gene56565:CDS |
| AAAATGGAGATTTCAAGTGG+AGG | 0.612604 | 4.2:+27420108 | None:intergenic |
| ATGGAGAACTCAAATGGCGA+TGG | 0.614239 | 4.2:+27421110 | MS.gene56565:CDS |
| ATGTTGGTTGCTGAAACTAG+TGG | 0.620640 | 4.2:+27420405 | MS.gene56565:CDS |
| TATAGATTCTATGATGAGTG+CGG | 0.621002 | 4.2:+27421058 | MS.gene56565:CDS |
| ATGCACTACAAAACGCAACA+AGG | 0.631744 | 4.2:-27420695 | None:intergenic |
| GATACTTGCGACGTATATGT+GGG | 0.634555 | 4.2:+27420629 | MS.gene56565:CDS |
| AACAACAATGTAGCATACAA+AGG | 0.636060 | 4.2:-27420504 | None:intergenic |
| GTTGGTGATCTCGGTTCTGG+AGG | 0.638193 | 4.2:+27420824 | MS.gene56565:CDS |
| AAGACACTGAGTTATGGTGA+TGG | 0.640856 | 4.2:+27420978 | MS.gene56565:CDS |
| GATCTTCGAGAATGTGGGAA+GGG | 0.641099 | 4.2:+27421000 | MS.gene56565:CDS |
| GGATCTTCGAGAATGTGGGA+AGG | 0.642671 | 4.2:+27420999 | MS.gene56565:CDS |
| CTCAAACAACCCCTCCACAA+AGG | 0.646189 | 4.2:-27420946 | None:intergenic |
| GAATACATTATCACCAAGAG+CGG | 0.651587 | 4.2:-27421023 | None:intergenic |
| GGTTCTGGAGGATGTTTCGG+GGG | 0.680880 | 4.2:+27420836 | MS.gene56565:CDS |
| TGATGGATCTTCGAGAATGT+GGG | 0.681312 | 4.2:+27420995 | MS.gene56565:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTTAGAGAAACTATA+AGG | + | chr4.2:27420256-27420275 | MS.gene56565:CDS | 20.0% |
| ! | AATTCAATCAATGAATGCTT+TGG | + | chr4.2:27420233-27420252 | MS.gene56565:CDS | 25.0% |
| ! | ATATATCTTGGATCAACAAT+AGG | + | chr4.2:27420918-27420937 | MS.gene56565:CDS | 25.0% |
| ! | GTAGATCATATGAAAAAAGA+GGG | + | chr4.2:27420150-27420169 | MS.gene56565:CDS | 25.0% |
| ! | TTGTGAAGAATCTTACTATT+AGG | + | chr4.2:27420379-27420398 | MS.gene56565:CDS | 25.0% |
| !! | ATTGTTGTTATTGTCGAAAA+CGG | + | chr4.2:27420518-27420537 | MS.gene56565:CDS | 25.0% |
| !!! | CAACTCAATTTTAGAAACTA+TGG | + | chr4.2:27421133-27421152 | MS.gene56565:CDS | 25.0% |
| AACAACAATGTAGCATACAA+AGG | - | chr4.2:27420507-27420526 | None:intergenic | 30.0% | |
| GAGAAACTATAAGGATTCTT+AGG | + | chr4.2:27420265-27420284 | MS.gene56565:CDS | 30.0% | |
| GATTCTTAGGTTTAATGCAT+GGG | + | chr4.2:27420278-27420297 | MS.gene56565:CDS | 30.0% | |
| GGTAGATCATATGAAAAAAG+AGG | + | chr4.2:27420149-27420168 | MS.gene56565:CDS | 30.0% | |
| TATAGATTCTATGATGAGTG+CGG | + | chr4.2:27421058-27421077 | MS.gene56565:CDS | 30.0% | |
| TATTCGAGAAAGAAGTTTGA+TGG | + | chr4.2:27420567-27420586 | MS.gene56565:CDS | 30.0% | |
| TCTTACTATTAGGCTTATGT+TGG | + | chr4.2:27420389-27420408 | MS.gene56565:CDS | 30.0% | |
| TGACAAGATTGCTTAATCAT+AGG | - | chr4.2:27420444-27420463 | None:intergenic | 30.0% | |
| ! | TGTGCTATTGTCTAATGTAT+TGG | + | chr4.2:27420344-27420363 | MS.gene56565:CDS | 30.0% |
| !! | GGTGATAATGTATTCTTTTG+TGG | + | chr4.2:27421031-27421050 | MS.gene56565:CDS | 30.0% |
| !! | TTTACGTCAAGCTTTAGAAT+TGG | + | chr4.2:27420188-27420207 | MS.gene56565:CDS | 30.0% |
| !!! | AGGTCGAGTATTTTAATCAA+AGG | + | chr4.2:27420873-27420892 | MS.gene56565:CDS | 30.0% |
| AGAGTAAAGACACTGAGTTA+TGG | + | chr4.2:27420972-27420991 | MS.gene56565:CDS | 35.0% | |
| ATATGATCTACCCTAATCCT+AGG | - | chr4.2:27420141-27420160 | None:intergenic | 35.0% | |
| GAATACATTATCACCAAGAG+CGG | - | chr4.2:27421026-27421045 | None:intergenic | 35.0% | |
| GGATTCTTAGGTTTAATGCA+TGG | + | chr4.2:27420277-27420296 | MS.gene56565:CDS | 35.0% | |
| TCTTGGATCAACAATAGGAA+TGG | + | chr4.2:27420923-27420942 | MS.gene56565:CDS | 35.0% | |
| TGCTTAATCATAGGTCTCAA+AGG | - | chr4.2:27420435-27420454 | None:intergenic | 35.0% | |
| TTTAATCAAAGGTCAGACTC+AGG | + | chr4.2:27420884-27420903 | MS.gene56565:CDS | 35.0% | |
| TTTAGCATGGAGAACTCAAA+TGG | + | chr4.2:27421104-27421123 | MS.gene56565:CDS | 35.0% | |
| ! | CAGTTGTAGATCTTTTAGCA+TGG | + | chr4.2:27421091-27421110 | MS.gene56565:CDS | 35.0% |
| AACAATAGGAATGGCCTTTG+TGG | + | chr4.2:27420932-27420951 | MS.gene56565:CDS | 40.0% | |
| AAGACACTGAGTTATGGTGA+TGG | + | chr4.2:27420978-27420997 | MS.gene56565:CDS | 40.0% | |
| AGATACTTGCGACGTATATG+TGG | + | chr4.2:27420628-27420647 | MS.gene56565:CDS | 40.0% | |
| AGGTTGTTCTCCTAGGATTA+GGG | + | chr4.2:27420128-27420147 | MS.gene56565:CDS | 40.0% | |
| ATGCACTACAAAACGCAACA+AGG | - | chr4.2:27420698-27420717 | None:intergenic | 40.0% | |
| GATACTTGCGACGTATATGT+GGG | + | chr4.2:27420629-27420648 | MS.gene56565:CDS | 40.0% | |
| GCAATCTTGTCAGAGATTTG+CGG | + | chr4.2:27420452-27420471 | MS.gene56565:CDS | 40.0% | |
| GCAGCATACACAACAACATT+AGG | - | chr4.2:27420741-27420760 | None:intergenic | 40.0% | |
| GCCATTTCTGCTGAAACAAT+GGG | + | chr4.2:27421155-27421174 | MS.gene56565:CDS | 40.0% | |
| GTCGGTCTGCTAATATATCT+TGG | + | chr4.2:27420906-27420925 | MS.gene56565:CDS | 40.0% | |
| TGGGCTTGTACAGTTATTGT+TGG | + | chr4.2:27420648-27420667 | MS.gene56565:CDS | 40.0% | |
| TGTTGTGTATGCTGCATTGA+TGG | + | chr4.2:27420746-27420765 | MS.gene56565:CDS | 40.0% | |
| TTGTCAGAGATTTGCGGATA+CGG | + | chr4.2:27420458-27420477 | MS.gene56565:CDS | 40.0% | |
| ! | ATGTTGGTTGCTGAAACTAG+TGG | + | chr4.2:27420405-27420424 | MS.gene56565:CDS | 40.0% |
| ! | TGATGGATCTTCGAGAATGT+GGG | + | chr4.2:27420995-27421014 | MS.gene56565:CDS | 40.0% |
| ! | TGTTGCGTTTTGTAGTGCAT+TGG | + | chr4.2:27420698-27420717 | MS.gene56565:CDS | 40.0% |
| !! | TTCGAAGTTTTGTGTGATCG+TGG | + | chr4.2:27420590-27420609 | MS.gene56565:CDS | 40.0% |
| AATAGGAATGGCCTTTGTGG+AGG | + | chr4.2:27420935-27420954 | MS.gene56565:CDS | 45.0% | |
| AATCATTTGCAGCGTTGCGT+TGG | + | chr4.2:27420806-27420825 | MS.gene56565:CDS | 45.0% | |
| ATAGGAATGGCCTTTGTGGA+GGG | + | chr4.2:27420936-27420955 | MS.gene56565:CDS | 45.0% | |
| ATCAAAGGTCAGACTCAGGT+CGG | + | chr4.2:27420888-27420907 | MS.gene56565:CDS | 45.0% | |
| ATGGAGAACTCAAATGGCGA+TGG | + | chr4.2:27421110-27421129 | MS.gene56565:CDS | 45.0% | |
| GACAATAGCACAGCAGAAAC+AGG | - | chr4.2:27420336-27420355 | None:intergenic | 45.0% | |
| GAGGTTGTTCTCCTAGGATT+AGG | + | chr4.2:27420127-27420146 | MS.gene56565:CDS | 45.0% | |
| GATCTTCGAGAATGTGGGAA+GGG | + | chr4.2:27421000-27421019 | MS.gene56565:CDS | 45.0% | |
| GCCCATTGTTTCAGCAGAAA+TGG | - | chr4.2:27421159-27421178 | None:intergenic | 45.0% | |
| GGCCATTTCTGCTGAAACAA+TGG | + | chr4.2:27421154-27421173 | MS.gene56565:CDS | 45.0% | |
| GTTATTGTCGAAAACGGCTG+TGG | + | chr4.2:27420524-27420543 | MS.gene56565:CDS | 45.0% | |
| ! | GTGTATGCTGCATTGATGGT+CGG | + | chr4.2:27420750-27420769 | MS.gene56565:CDS | 45.0% |
| ! | GTGTGATCGTGGCAAAGTTT+TGG | + | chr4.2:27420601-27420620 | MS.gene56565:CDS | 45.0% |
| !! | GTAGTGCATTGGCTGTTCTT+GGG | + | chr4.2:27420709-27420728 | MS.gene56565:CDS | 45.0% |
| !! | GTGATGGATCTTCGAGAATG+TGG | + | chr4.2:27420994-27421013 | MS.gene56565:CDS | 45.0% |
| !! | TGATCGTGGCAAAGTTTTGG+AGG | + | chr4.2:27420604-27420623 | MS.gene56565:CDS | 45.0% |
| !! | TGTAGTGCATTGGCTGTTCT+TGG | + | chr4.2:27420708-27420727 | MS.gene56565:CDS | 45.0% |
| CAAGTGGAGGTTGTTCTCCT+AGG | + | chr4.2:27420121-27420140 | MS.gene56565:CDS | 50.0% | |
| CTCAAACAACCCCTCCACAA+AGG | - | chr4.2:27420949-27420968 | None:intergenic | 50.0% | |
| GGATCTTCGAGAATGTGGGA+AGG | + | chr4.2:27420999-27421018 | MS.gene56565:CDS | 50.0% | |
| TAGGAATGGCCTTTGTGGAG+GGG | + | chr4.2:27420937-27420956 | MS.gene56565:CDS | 50.0% | |
| TGCGGATACGGTGATTGCTT+CGG | + | chr4.2:27420470-27420489 | MS.gene56565:CDS | 50.0% | |
| !! | CTCGGTTCTGGAGGATGTTT+CGG | + | chr4.2:27420833-27420852 | MS.gene56565:CDS | 50.0% |
| !! | TCGGTTCTGGAGGATGTTTC+GGG | + | chr4.2:27420834-27420853 | MS.gene56565:CDS | 50.0% |
| !! | CAGCGTTGCGTTGGTGATCT+CGG | + | chr4.2:27420815-27420834 | MS.gene56565:CDS | 55.0% |
| !! | CGGTTCTGGAGGATGTTTCG+GGG | + | chr4.2:27420835-27420854 | MS.gene56565:CDS | 55.0% |
| !! | GGTTCTGGAGGATGTTTCGG+GGG | + | chr4.2:27420836-27420855 | MS.gene56565:CDS | 55.0% |
| !! | GTTGGTGATCTCGGTTCTGG+AGG | + | chr4.2:27420824-27420843 | MS.gene56565:CDS | 55.0% |
| !! | TGCGTTGGTGATCTCGGTTC+TGG | + | chr4.2:27420821-27420840 | MS.gene56565:CDS | 55.0% |
| AATGTGGGAAGGGCCGCTCT+TGG | + | chr4.2:27421010-27421029 | MS.gene56565:CDS | 60.0% | |
| ! | GGAGGATGTTTCGGGGGCGC+AGG | + | chr4.2:27420842-27420861 | MS.gene56565:CDS | 70.0% |
| ! | CGGGGGCGCAGGCGATGCTA+AGG | + | chr4.2:27420853-27420872 | MS.gene56565:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 27420111 | 27421187 | 27420111 | ID=MS.gene56565 |
| chr4.2 | mRNA | 27420111 | 27421187 | 27420111 | ID=MS.gene56565.t1;Parent=MS.gene56565 |
| chr4.2 | exon | 27420111 | 27421187 | 27420111 | ID=MS.gene56565.t1.exon1;Parent=MS.gene56565.t1 |
| chr4.2 | CDS | 27420111 | 27421187 | 27420111 | ID=cds.MS.gene56565.t1;Parent=MS.gene56565.t1 |
| Gene Sequence |
| Protein sequence |
